AlfalfaGEDB | MS.gene008621

M. sativa cultivar XinJiangDaYe / MS.gene008621

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008037 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0022414 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048544 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF00954.23 PF01453.27

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene008621.t1	XP_003599321.1	92.9	762	53	1	1	762	36	796	0.00E+00	1468.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene008621.t1	P17801	39.8	781	425	18	2	755	50	812	4.3e-149	530.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene008621.t1	G7J0Q4	92.9	762	53	1	1	762	36	796	0.0e+00	1468.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene008621.t1	MTR_3g031610	92.913	762	53	1	1	762	36	796	1479
MS.gene008621.t1	MTR_3g031600	87.173	764	96	1	1	762	36	799	1376
MS.gene008621.t1	MTR_3g031640	80.000	765	150	2	1	762	36	800	1288
MS.gene008621.t1	MTR_3g031490	72.895	760	193	5	1	755	36	787	1131
MS.gene008621.t1	MTR_3g031480	73.012	767	200	5	1	761	39	804	1129
MS.gene008621.t1	MTR_3g031580	68.898	762	218	6	1	758	39	785	1048
MS.gene008621.t1	MTR_3g031470	68.992	774	225	6	1	761	38	809	1037
MS.gene008621.t1	MTR_3g031500	67.862	725	208	8	40	758	1	706	961
MS.gene008621.t1	MTR_7g058550	57.461	764	307	7	1	761	44	792	861
MS.gene008621.t1	MTR_7g058530	57.592	764	306	7	1	761	45	793	847

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene008621.t1	AT5G24080	32.035	796	462	29	1	756	46	802	7.37e-108	349
MS.gene008621.t1	AT4G00340	31.122	784	455	23	1	756	34	760	1.88e-97	320
MS.gene008621.t1	AT1G34300	32.116	794	420	30	2	756	44	757	2.00e-96	318
MS.gene008621.t1	AT4G00340	31.202	782	436	23	1	756	34	739	5.49e-96	316
MS.gene008621.t1	AT5G24080	31.594	709	412	25	87	756	1	675	6.44e-94	309
MS.gene008621.t1	AT5G24080	31.594	709	412	25	87	756	1	675	6.44e-94	309
MS.gene008621.t1	AT5G35370	30.655	809	445	36	1	752	51	800	1.82e-86	292
MS.gene008621.t1	AT1G11303	28.010	814	446	27	6	761	48	779	2.41e-77	266
MS.gene008621.t1	AT1G11300	28.144	803	459	27	6	761	48	779	1.72e-73	255
MS.gene008621.t1	AT4G11900	28.834	815	458	26	5	755	52	808	1.61e-72	253

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Find 169 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATTTCCTCCCAGTTCT+TGG	0.259373	3.4:-60912477	None:intergenic
AAAGACTCATAAGGAGAGTT+TGG	0.377492	3.4:+60913745	MS.gene008621:CDS
AAATTATGACATGGTTAAAT+TGG	0.196556	3.4:+60913850	MS.gene008621:CDS
AACATTACCATCAAAGTCTA+GGG	0.565116	3.4:-60912340	None:intergenic
AACATTGAAATAGGATGCGT+CGG	0.598363	3.4:-60911884	None:intergenic
AACCAAAGCATGAAGTTCAT+TGG	0.464025	3.4:-60912939	None:intergenic
AACCCAAAATCCGCTACCTT+GGG	0.496813	3.4:-60913524	None:intergenic
AAGAATCATGTTCATGAGTT+TGG	0.246793	3.4:-60913955	None:intergenic
AAGAGGTATAAAATTGCTCT+CGG	0.567686	3.4:+60913401	MS.gene008621:CDS
AAGATTGATCCTTGAAAATT+TGG	0.138884	3.4:-60912786	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACATTACCATCAAAGTCTA+GGG	-	chr3.4:60912343-60912362	None:intergenic	30.0%
AAGAATCATGTTCATGAGTT+TGG	-	chr3.4:60913958-60913977	None:intergenic	30.0%
AAGGTAGATGTTTATAGCTA+TGG	+	chr3.4:60913656-60913675	MS.gene008621:CDS	30.0%
AGTAAATACTGGAAACTTGA+GGG	-	chr3.4:60912167-60912186	None:intergenic	30.0%
AGTGACAACATATATTCATC+AGG	+	chr3.4:60912087-60912106	MS.gene008621:CDS	30.0%
ATAGCTATAAACATCTACCT+TGG	-	chr3.4:60913657-60913676	None:intergenic	30.0%
ATCAGAAATGAAATCTTTGG+TGG	+	chr3.4:60913799-60913818	MS.gene008621:CDS	30.0%
ATTGGGATCAAATTATGACA+TGG	+	chr3.4:60913841-60913860	MS.gene008621:CDS	30.0%
CAAACATTCTTCGTGTAAAT+AGG	-	chr3.4:60913444-60913463	None:intergenic	30.0%
CAACAACCTTTCAAAATACA+TGG	+	chr3.4:60912420-60912439	MS.gene008621:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	60911691	60913979	60911691	ID=MS.gene008621
chr3.4	mRNA	60911691	60913979	60911691	ID=MS.gene008621.t1;Parent=MS.gene008621
chr3.4	exon	60911691	60913979	60911691	ID=MS.gene008621.t1.exon1;Parent=MS.gene008621.t1
chr3.4	CDS	60911691	60913979	60911691	ID=cds.MS.gene008621.t1;Parent=MS.gene008621.t1

Gene Sequence

>MS.gene008621

ATGTCACCCAAAGGCACATTCACTGCAGGCTTTTATCCCGTAGGTGAAAATGCTTATTCCTTTGCCATATGGTTCACTCAAAAACACAAAAATCTAAACAACGTCACCGTTGTTTGGATGGCAAATCGTGACCAACCGGTTAACGGAAAACGCTCAACACTTTCCCTTCTCAAAACTGGAAACCTCGTCTTAACCGACGCATCCTATTTCAATGTTTGGTCCACAAACACAAACTCATCCAAACCACTTGGGTTGTTTTTATACGACACAGGAAATCTCGTTCTTAGAGAACGCAACACAAATGGTTTCATTTTGTGGCAAAGCTTTGATTTCCCAACAGATACCCTCCTTCCTGATCAAAGTTTCACAAGGTACATGACTCTTGTTTCCTCCAAAAGTGACAACATATATTCATCAGGGTTCTATAAGCTTTTTTTCGACAATGATAATATTTTACGTCTTCTCTATGATGGCCCTCAAGTTTCCAGTATTTACTGGCCATATCCTTGGCTCGTGGGCTGGGATGCTGGTAGATCATCGTATAACCATAGCAGGGTTGCAAAACTAGATGTTTGGGGGAGCTTTAGATCTTCCGATGATTTTACTTTAAATACAAGTGATTATGGGACACTGCTCCTACGAAGATTGACCCTAGACTTTGATGGTAATGTTCGTGTTTATAGCCGAAAACACGGACAAGAGAAGTGGTCAATTTCAGGACAATTCCACCAACAACCTTTCAAAATACATGGAATTTGTGGACCTAATAGCATTTGCATTAACAATCCAAGAACTGGGAGGAAATGTTTGTGTCTTCCTGGTTATAGGAGGATCCATAATCAAGATTGGTCACAAGGGTGCAAACCAAGCTTCCAACTTTCATGCAACAATAAAACCGATTTAGAGACTCGTTTCCAACGCTTATCACATGTTCAGTTTTATGGATATGATGATGACTACCAAGCAAATTACACTTATAAACAATGTAAGCATTTATGCATGAGAACGTGCCAATGCATAGCCTTCCAGTATCGTTTGGACCTGGGTGTATCTTATTGCTATCCTAAGTCACAATTACAAAATGGATTCAGTTCACCAAATTTTCAAGGATCAATCTTCTTGCGATTGCCAAAAAGAAAACATGTTTATTTCCATGAGAATGTTGTAAAAAATGGTATCTTGGATTGTTCTAGAAATAATGGAGTAAAACAACTAAGAAGATCATATGTTGAAGGCGAAGAAAATGGACCAATGAACTTCATGCTTTGGTTTACTTCTGGCTTAGGGGTGATCGAGGCCTTGTGCTTCTCTATGATCTGGTGGTTCTTATTTAAGAATAAGAAGCACTTTGTTAGAGATAATCAAGGCTACGTTCTTGCAGGAGCAACAGGATTTCGAAAATTCACTTACTCTGAACTAAAACAAGCAACAAAATGTTTTAGTCAAGAGATTGGAAAGGGTGCAGGAGGAACTGTGTACAAGGGTTTATTATCTGATAATAGAGTTGTGGCTATAAAGAGACTGCATGAAGCAAACAAAGGAGAGAGTGAATTTCTTGCTGAAGTTAGCGTCATTGGAAGGCTTAACCACATGAATTTGATCGGTATGTGGGGGTATTGTGCAGAGGGAAAACACAGATTGTTAGTTTTCGAGTACATGGAAAAAGGTTCTTTAGCCGATAATTTGTCATCGATTGCACTGAATTGGGGTAAGAGGTATAAAATTGCTCTCGGAACTGCAAAGTGTCTTGCCTATTTACACGAAGAATGTTTGGAGTGGATTTTGCATTGTGACATAAAGCCGCAAAACATACTAATTGACTCCGATTACCAACCCAAGGTAGCGGATTTTGGGTTGTCTAAGTTACTACAAAGGAACAATCTTGATAATTCAAGTTTCTCAAGGATGAGAGGGACAAGAGGTTACATGGCACCTGAATGGATTTTCAACTTGCCAATCACTTCCAAGGTAGATGTTTATAGCTATGGAGTTGTGCTGCTAGAGATGATTACTGGGAAGAGTGCAATGACGGGTATCTTAATCACAGATGGAGAAAAGACTCATAAGGAGAGTTTGGTATCATGGGTGAGAGATAAAAGAAGGAAATTATCAGAAATGAAATCTTTGGTGGAACAAATAGTAGACCCTACATTGGGATCAAATTATGACATGGTTAAATTGGAGACTTTGACAATGGTTGCTCTAAACTGTGTTGAGGAAGAGAAAGACATGAGACCCAACATGAGTGAAGTTGTTGAAAGGCTCCAAACTCATGAACATGATTCTTGA

Protein sequence

>MS.gene008621.t1

MSPKGTFTAGFYPVGENAYSFAIWFTQKHKNLNNVTVVWMANRDQPVNGKRSTLSLLKTGNLVLTDASYFNVWSTNTNSSKPLGLFLYDTGNLVLRERNTNGFILWQSFDFPTDTLLPDQSFTRYMTLVSSKSDNIYSSGFYKLFFDNDNILRLLYDGPQVSSIYWPYPWLVGWDAGRSSYNHSRVAKLDVWGSFRSSDDFTLNTSDYGTLLLRRLTLDFDGNVRVYSRKHGQEKWSISGQFHQQPFKIHGICGPNSICINNPRTGRKCLCLPGYRRIHNQDWSQGCKPSFQLSCNNKTDLETRFQRLSHVQFYGYDDDYQANYTYKQCKHLCMRTCQCIAFQYRLDLGVSYCYPKSQLQNGFSSPNFQGSIFLRLPKRKHVYFHENVVKNGILDCSRNNGVKQLRRSYVEGEENGPMNFMLWFTSGLGVIEALCFSMIWWFLFKNKKHFVRDNQGYVLAGATGFRKFTYSELKQATKCFSQEIGKGAGGTVYKGLLSDNRVVAIKRLHEANKGESEFLAEVSVIGRLNHMNLIGMWGYCAEGKHRLLVFEYMEKGSLADNLSSIALNWGKRYKIALGTAKCLAYLHEECLEWILHCDIKPQNILIDSDYQPKVADFGLSKLLQRNNLDNSSFSRMRGTRGYMAPEWIFNLPITSKVDVYSYGVVLLEMITGKSAMTGILITDGEKTHKESLVSWVRDKRRKLSEMKSLVEQIVDPTLGSNYDMVKLETLTMVALNCVEEEKDMRPNMSEVVERLQTHEHDS