Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008624.t1 | GAU27630.1 | 95.4 | 175 | 8 | 0 | 1 | 175 | 1 | 175 | 6.10E-90 | 340.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008624.t1 | Q8LBW3 | 87.1 | 116 | 15 | 0 | 2 | 117 | 3 | 118 | 1.7e-53 | 210.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008624.t1 | A0A2Z6MVB3 | 95.4 | 175 | 8 | 0 | 1 | 175 | 1 | 175 | 4.4e-90 | 340.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene008624.t1 | TF | LOB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008624.t1 | MTR_3g031660 | 96.610 | 177 | 5 | 1 | 1 | 176 | 1 | 177 | 1.53e-127 | 355 |
| MS.gene008624.t1 | MTR_5g083230 | 67.241 | 174 | 40 | 6 | 1 | 173 | 1 | 158 | 4.12e-76 | 225 |
| MS.gene008624.t1 | MTR_3g071590 | 67.949 | 156 | 38 | 2 | 2 | 157 | 3 | 146 | 2.71e-72 | 215 |
| MS.gene008624.t1 | MTR_4g083680 | 65.833 | 120 | 41 | 0 | 3 | 122 | 11 | 130 | 1.26e-57 | 178 |
| MS.gene008624.t1 | MTR_2g068760 | 69.643 | 112 | 34 | 0 | 6 | 117 | 12 | 123 | 1.53e-56 | 175 |
| MS.gene008624.t1 | MTR_2g093310 | 62.385 | 109 | 41 | 0 | 6 | 114 | 32 | 140 | 3.75e-49 | 157 |
| MS.gene008624.t1 | MTR_4g060950 | 64.545 | 110 | 38 | 1 | 6 | 114 | 23 | 132 | 4.69e-48 | 154 |
| MS.gene008624.t1 | MTR_1g095850 | 66.355 | 107 | 36 | 0 | 8 | 114 | 73 | 179 | 6.02e-48 | 155 |
| MS.gene008624.t1 | MTR_4g105170 | 65.385 | 104 | 36 | 0 | 5 | 108 | 9 | 112 | 2.90e-47 | 152 |
| MS.gene008624.t1 | MTR_3g077240 | 65.094 | 106 | 37 | 0 | 3 | 108 | 6 | 111 | 6.49e-47 | 152 |
| MS.gene008624.t1 | MTR_6g005070 | 57.522 | 113 | 48 | 0 | 5 | 117 | 7 | 119 | 3.49e-46 | 148 |
| MS.gene008624.t1 | MTR_6g005080 | 50.000 | 140 | 66 | 1 | 2 | 141 | 5 | 140 | 1.40e-45 | 147 |
| MS.gene008624.t1 | MTR_7g033800 | 61.538 | 104 | 40 | 0 | 5 | 108 | 9 | 112 | 1.66e-45 | 147 |
| MS.gene008624.t1 | MTR_5g083960 | 57.258 | 124 | 48 | 1 | 5 | 128 | 37 | 155 | 7.83e-45 | 147 |
| MS.gene008624.t1 | MTR_3g094690 | 62.385 | 109 | 41 | 0 | 6 | 114 | 46 | 154 | 1.64e-44 | 147 |
| MS.gene008624.t1 | MTR_3g073690 | 60.577 | 104 | 41 | 0 | 4 | 107 | 6 | 109 | 1.91e-44 | 146 |
| MS.gene008624.t1 | MTR_5g017950 | 61.905 | 105 | 40 | 0 | 3 | 107 | 4 | 108 | 1.64e-43 | 147 |
| MS.gene008624.t1 | MTR_5g083010 | 61.538 | 104 | 40 | 0 | 4 | 107 | 8 | 111 | 1.28e-42 | 140 |
| MS.gene008624.t1 | MTR_3g452660 | 57.009 | 107 | 46 | 0 | 1 | 107 | 1 | 107 | 2.97e-42 | 143 |
| MS.gene008624.t1 | MTR_3g094690 | 61.468 | 109 | 41 | 1 | 6 | 114 | 46 | 153 | 6.40e-42 | 140 |
| MS.gene008624.t1 | MTR_3g071420 | 62.000 | 100 | 38 | 0 | 5 | 104 | 12 | 111 | 1.56e-41 | 138 |
| MS.gene008624.t1 | MTR_8g040900 | 63.551 | 107 | 39 | 0 | 1 | 107 | 1 | 107 | 3.49e-41 | 138 |
| MS.gene008624.t1 | MTR_5g075020 | 55.200 | 125 | 54 | 1 | 6 | 128 | 42 | 166 | 7.69e-41 | 137 |
| MS.gene008624.t1 | MTR_5g075020 | 55.200 | 125 | 54 | 1 | 6 | 128 | 46 | 170 | 1.20e-40 | 137 |
| MS.gene008624.t1 | MTR_7g096530 | 57.009 | 107 | 44 | 2 | 2 | 107 | 10 | 115 | 2.88e-38 | 130 |
| MS.gene008624.t1 | MTR_1g070220 | 51.724 | 116 | 55 | 1 | 3 | 117 | 11 | 126 | 1.14e-37 | 129 |
| MS.gene008624.t1 | MTR_5g093010 | 41.007 | 139 | 79 | 1 | 8 | 143 | 6 | 144 | 1.58e-37 | 126 |
| MS.gene008624.t1 | MTR_8g036105 | 52.459 | 122 | 55 | 2 | 4 | 124 | 15 | 134 | 1.18e-36 | 126 |
| MS.gene008624.t1 | MTR_7g028905 | 51.961 | 102 | 49 | 0 | 6 | 107 | 4 | 105 | 1.82e-36 | 123 |
| MS.gene008624.t1 | MTR_7g074990 | 55.882 | 102 | 44 | 1 | 7 | 107 | 20 | 121 | 7.99e-35 | 122 |
| MS.gene008624.t1 | MTR_8g036085 | 53.398 | 103 | 47 | 1 | 6 | 107 | 22 | 124 | 9.33e-35 | 122 |
| MS.gene008624.t1 | MTR_6g027710 | 50.962 | 104 | 50 | 1 | 6 | 108 | 39 | 142 | 3.48e-34 | 120 |
| MS.gene008624.t1 | MTR_7g096610 | 45.860 | 157 | 69 | 6 | 2 | 147 | 4 | 155 | 4.13e-34 | 120 |
| MS.gene008624.t1 | MTR_1g070205 | 42.000 | 150 | 79 | 3 | 7 | 150 | 12 | 159 | 5.51e-33 | 117 |
| MS.gene008624.t1 | MTR_7g075230 | 43.624 | 149 | 69 | 4 | 4 | 137 | 9 | 157 | 6.61e-33 | 116 |
| MS.gene008624.t1 | MTR_6g027700 | 38.235 | 170 | 98 | 4 | 1 | 169 | 1 | 164 | 2.14e-32 | 115 |
| MS.gene008624.t1 | MTR_5g080470 | 46.281 | 121 | 58 | 3 | 2 | 121 | 3 | 117 | 2.78e-31 | 112 |
| MS.gene008624.t1 | MTR_8g079660 | 46.535 | 101 | 54 | 0 | 7 | 107 | 8 | 108 | 7.05e-31 | 113 |
| MS.gene008624.t1 | MTR_8g079620 | 43.564 | 101 | 57 | 0 | 7 | 107 | 8 | 108 | 7.76e-30 | 109 |
| MS.gene008624.t1 | MTR_8g079580 | 46.602 | 103 | 54 | 1 | 7 | 108 | 8 | 110 | 1.93e-29 | 108 |
| MS.gene008624.t1 | MTR_4g107450 | 45.455 | 99 | 54 | 0 | 2 | 100 | 5 | 103 | 9.19e-27 | 103 |
| MS.gene008624.t1 | MTR_6g011250 | 38.095 | 126 | 75 | 2 | 8 | 130 | 10 | 135 | 1.07e-25 | 97.4 |
| MS.gene008624.t1 | MTR_6g011200 | 42.553 | 94 | 53 | 1 | 8 | 100 | 10 | 103 | 3.82e-25 | 97.8 |
| MS.gene008624.t1 | MTR_6g011230 | 39.394 | 99 | 60 | 0 | 2 | 100 | 6 | 104 | 1.02e-24 | 95.5 |
| MS.gene008624.t1 | MTR_2g100020 | 41.000 | 100 | 59 | 0 | 8 | 107 | 20 | 119 | 4.42e-24 | 95.5 |
| MS.gene008624.t1 | MTR_8g017090 | 39.000 | 100 | 61 | 0 | 8 | 107 | 13 | 112 | 2.91e-23 | 94.0 |
| MS.gene008624.t1 | MTR_4g099230 | 42.105 | 95 | 50 | 2 | 8 | 97 | 3 | 97 | 1.34e-21 | 86.3 |
| MS.gene008624.t1 | MTR_5g085390 | 30.719 | 153 | 101 | 2 | 8 | 159 | 10 | 158 | 1.12e-20 | 85.5 |
| MS.gene008624.t1 | MTR_4g088035 | 34.091 | 88 | 58 | 0 | 8 | 95 | 7 | 94 | 2.45e-17 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008624.t1 | AT2G30130 | 62.827 | 191 | 55 | 2 | 2 | 176 | 3 | 193 | 4.32e-77 | 228 |
| MS.gene008624.t1 | AT1G31320 | 64.463 | 121 | 43 | 0 | 3 | 123 | 9 | 129 | 6.09e-51 | 161 |
| MS.gene008624.t1 | AT1G07900 | 66.055 | 109 | 37 | 0 | 6 | 114 | 32 | 140 | 3.39e-50 | 160 |
| MS.gene008624.t1 | AT2G28500 | 64.865 | 111 | 39 | 0 | 6 | 116 | 54 | 164 | 4.09e-50 | 161 |
| MS.gene008624.t1 | AT1G16530 | 62.162 | 111 | 41 | 1 | 2 | 111 | 9 | 119 | 4.88e-48 | 154 |
| MS.gene008624.t1 | AT5G63090 | 66.019 | 103 | 35 | 0 | 5 | 107 | 9 | 111 | 2.89e-47 | 152 |
| MS.gene008624.t1 | AT5G63090 | 66.019 | 103 | 35 | 0 | 5 | 107 | 9 | 111 | 2.89e-47 | 152 |
| MS.gene008624.t1 | AT5G63090 | 66.019 | 103 | 35 | 0 | 5 | 107 | 9 | 111 | 2.89e-47 | 152 |
| MS.gene008624.t1 | AT5G63090 | 66.019 | 103 | 35 | 0 | 5 | 107 | 9 | 111 | 2.89e-47 | 152 |
| MS.gene008624.t1 | AT5G66870 | 64.486 | 107 | 38 | 0 | 1 | 107 | 1 | 107 | 1.94e-46 | 154 |
| MS.gene008624.t1 | AT3G27650 | 60.577 | 104 | 41 | 0 | 5 | 108 | 37 | 140 | 2.07e-45 | 147 |
| MS.gene008624.t1 | AT2G30340 | 59.130 | 115 | 46 | 1 | 6 | 120 | 52 | 165 | 1.09e-44 | 149 |
| MS.gene008624.t1 | AT2G30340 | 59.130 | 115 | 46 | 1 | 6 | 120 | 51 | 164 | 1.19e-44 | 148 |
| MS.gene008624.t1 | AT2G23660 | 59.615 | 104 | 42 | 0 | 5 | 108 | 3 | 106 | 2.43e-44 | 149 |
| MS.gene008624.t1 | AT2G23660 | 59.615 | 104 | 42 | 0 | 5 | 108 | 3 | 106 | 2.43e-44 | 149 |
| MS.gene008624.t1 | AT2G23660 | 59.615 | 104 | 42 | 0 | 5 | 108 | 3 | 106 | 2.43e-44 | 149 |
| MS.gene008624.t1 | AT3G26620 | 55.263 | 114 | 51 | 0 | 8 | 121 | 6 | 119 | 3.47e-44 | 142 |
| MS.gene008624.t1 | AT3G26660 | 57.273 | 110 | 47 | 0 | 8 | 117 | 6 | 115 | 1.27e-43 | 141 |
| MS.gene008624.t1 | AT2G40470 | 63.158 | 114 | 42 | 0 | 6 | 119 | 19 | 132 | 4.61e-43 | 142 |
| MS.gene008624.t1 | AT2G40470 | 63.158 | 114 | 42 | 0 | 6 | 119 | 44 | 157 | 9.53e-43 | 142 |
| MS.gene008624.t1 | AT3G11090 | 61.538 | 104 | 40 | 0 | 5 | 108 | 9 | 112 | 8.72e-42 | 138 |
| MS.gene008624.t1 | AT1G65620 | 64.762 | 105 | 37 | 0 | 3 | 107 | 5 | 109 | 2.71e-40 | 135 |
| MS.gene008624.t1 | AT1G65620 | 64.762 | 105 | 37 | 0 | 3 | 107 | 5 | 109 | 2.71e-40 | 135 |
| MS.gene008624.t1 | AT1G65620 | 64.762 | 105 | 37 | 0 | 3 | 107 | 5 | 109 | 2.71e-40 | 135 |
| MS.gene008624.t1 | AT1G65620 | 64.762 | 105 | 37 | 0 | 3 | 107 | 5 | 109 | 2.71e-40 | 135 |
| MS.gene008624.t1 | AT1G65620 | 64.762 | 105 | 37 | 0 | 3 | 107 | 5 | 109 | 2.71e-40 | 135 |
| MS.gene008624.t1 | AT2G42430 | 54.054 | 111 | 49 | 2 | 2 | 111 | 11 | 120 | 3.24e-36 | 126 |
| MS.gene008624.t1 | AT3G03760 | 53.846 | 104 | 47 | 1 | 6 | 108 | 50 | 153 | 3.83e-36 | 127 |
| MS.gene008624.t1 | AT4G00210 | 52.778 | 108 | 50 | 1 | 5 | 111 | 9 | 116 | 7.36e-35 | 122 |
| MS.gene008624.t1 | AT2G42440 | 47.101 | 138 | 68 | 4 | 2 | 138 | 3 | 136 | 4.61e-34 | 120 |
| MS.gene008624.t1 | AT5G06080 | 39.869 | 153 | 82 | 2 | 1 | 143 | 1 | 153 | 4.86e-34 | 119 |
| MS.gene008624.t1 | AT2G45410 | 55.340 | 103 | 45 | 1 | 10 | 111 | 19 | 121 | 7.12e-34 | 119 |
| MS.gene008624.t1 | AT2G31310 | 49.533 | 107 | 53 | 1 | 1 | 106 | 1 | 107 | 1.20e-33 | 118 |
| MS.gene008624.t1 | AT4G00220 | 52.885 | 104 | 48 | 1 | 10 | 112 | 20 | 123 | 2.76e-33 | 118 |
| MS.gene008624.t1 | AT2G45420 | 50.000 | 104 | 51 | 1 | 10 | 112 | 40 | 143 | 1.39e-32 | 117 |
| MS.gene008624.t1 | AT3G58190 | 47.414 | 116 | 60 | 1 | 7 | 121 | 11 | 126 | 1.05e-31 | 114 |
| MS.gene008624.t1 | AT3G50510 | 46.729 | 107 | 57 | 0 | 1 | 107 | 6 | 112 | 1.15e-30 | 110 |
| MS.gene008624.t1 | AT3G50510 | 46.729 | 107 | 57 | 0 | 1 | 107 | 6 | 112 | 1.15e-30 | 110 |
| MS.gene008624.t1 | AT1G72980 | 37.903 | 124 | 76 | 1 | 2 | 124 | 8 | 131 | 1.26e-25 | 98.2 |
| MS.gene008624.t1 | AT5G35900 | 37.903 | 124 | 76 | 1 | 5 | 128 | 3 | 125 | 2.24e-25 | 97.4 |
| MS.gene008624.t1 | AT3G13850 | 34.815 | 135 | 85 | 1 | 8 | 142 | 37 | 168 | 3.27e-24 | 95.9 |
| MS.gene008624.t1 | AT3G47870 | 39.286 | 112 | 61 | 1 | 2 | 113 | 31 | 135 | 4.31e-24 | 96.7 |
| MS.gene008624.t1 | AT1G06280 | 46.753 | 77 | 41 | 0 | 8 | 84 | 25 | 101 | 5.13e-20 | 83.2 |
| MS.gene008624.t1 | AT4G22700 | 32.812 | 128 | 68 | 3 | 4 | 130 | 2 | 112 | 1.46e-16 | 73.9 |
| MS.gene008624.t1 | AT2G19820 | 36.458 | 96 | 60 | 1 | 6 | 100 | 11 | 106 | 2.84e-16 | 71.6 |
| MS.gene008624.t1 | AT5G15060 | 40.541 | 74 | 40 | 2 | 8 | 78 | 18 | 90 | 4.66e-13 | 63.5 |
| MS.gene008624.t1 | AT1G36000 | 31.034 | 87 | 60 | 0 | 7 | 93 | 9 | 95 | 7.14e-12 | 60.1 |
Find 29 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCATTGTTCATAAGGTCTT+TGG | 0.268404 | 3.4:+60830074 | MS.gene008624:CDS |
| GCTTCCGCTCTTTGATGAAT+TGG | 0.316095 | 3.4:-60830976 | None:intergenic |
| TTGACTTTGAAGGTATGATA+TGG | 0.344536 | 3.4:-60831064 | None:intergenic |
| AGAGTCAGAGATCCTGTTTA+TGG | 0.349567 | 3.4:+60831030 | MS.gene008624:CDS |
| CAAGTTTGCCATTGTTCATA+AGG | 0.360416 | 3.4:+60830067 | MS.gene008624:CDS |
| ATCTTTCACCAAATGGGATC+AGG | 0.403704 | 3.4:+60829954 | None:intergenic |
| TCTTAAGAGGCTCATAATCT+TGG | 0.411156 | 3.4:-60831299 | None:intergenic |
| TAGTAGAGTCTTGTTGCATC+TGG | 0.421309 | 3.4:-60831140 | None:intergenic |
| GCTCCAACACATCCATAAAC+AGG | 0.465710 | 3.4:-60831042 | None:intergenic |
| GGGTCATCAGAAGGAAAGTA+AGG | 0.522787 | 3.4:-60830041 | None:intergenic |
| CTCATAATCTTGGAATACAT+TGG | 0.523894 | 3.4:-60831289 | None:intergenic |
| ATTGTGAAACTTGACTTTGA+AGG | 0.527082 | 3.4:-60831074 | None:intergenic |
| CAATATCAGCAAAATGCTGC+AGG | 0.530622 | 3.4:+60830103 | MS.gene008624:CDS |
| ATTACAAATGCAACTTGCAA+TGG | 0.534981 | 3.4:+60831095 | MS.gene008624:CDS |
| GAAGGAAAGTTAATATACTG+TGG | 0.546177 | 3.4:-60831249 | None:intergenic |
| GAAGATGAGGAAGAAGAAGA+AGG | 0.546759 | 3.4:-60831267 | None:intergenic |
| TCTGAAAATAGTAATTGCTA+TGG | 0.547956 | 3.4:+60831219 | MS.gene008624:CDS |
| AACTTGCGTGGGTCATCAGA+AGG | 0.562825 | 3.4:-60830050 | None:intergenic |
| TGAACAATGGCAAACTTGCG+TGG | 0.564051 | 3.4:-60830062 | None:intergenic |
| TCATCTTGATCAACATGTGT+TGG | 0.567464 | 3.4:-60831180 | None:intergenic |
| TTGGAATACATTGGAAGATG+AGG | 0.572085 | 3.4:-60831280 | None:intergenic |
| GATCCTGTTTATGGATGTGT+TGG | 0.576357 | 3.4:+60831039 | MS.gene008624:CDS |
| AACAATTTGCAAGAAGCACA+AGG | 0.605556 | 3.4:-60829984 | None:intergenic |
| AACATGTGTTGGTAATGAGT+TGG | 0.621378 | 3.4:-60831169 | None:intergenic |
| GAACAATGGCAAACTTGCGT+GGG | 0.629522 | 3.4:-60830061 | None:intergenic |
| ACCAAAGACCTTATGAACAA+TGG | 0.629967 | 3.4:-60830075 | None:intergenic |
| TTTGCAAGAAGCACAAGGTG+AGG | 0.647847 | 3.4:-60829979 | None:intergenic |
| GTTGAGAAGACGTTGCACAC+AGG | 0.684974 | 3.4:+60830004 | MS.gene008624:CDS |
| GCTTCCAATTCATCAAAGAG+CGG | 0.698360 | 3.4:+60830972 | MS.gene008624:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAGATGATAAAAAAA+AGG | - | chr3.4:60830897-60830916 | None:intergenic | 10.0% |
| !!! | TTTTTTTATCATCTTTTTAT+TGG | + | chr3.4:60830897-60830916 | MS.gene008624:intron | 10.0% |
| !! | ACTAAAAAGATAAGATAAAA+AGG | - | chr3.4:60830780-60830799 | None:intergenic | 15.0% |
| !! | TATATTATACAAGTTATGTT+TGG | + | chr3.4:60830248-60830267 | MS.gene008624:intron | 15.0% |
| !!! | GTTTTTTTTTTTTTTTGAAG+AGG | + | chr3.4:60830299-60830318 | MS.gene008624:intron | 15.0% |
| !!! | TTTGTCTATCAAATTTTTTT+AGG | + | chr3.4:60830163-60830182 | MS.gene008624:intron | 15.0% |
| !! | TGATAGACAAAAAGAATATA+AGG | - | chr3.4:60830154-60830173 | None:intergenic | 20.0% |
| !! | TTTGATTCTACATTAAGTAA+AGG | + | chr3.4:60830550-60830569 | MS.gene008624:intron | 20.0% |
| !!! | ATCTTTTTAGTGTAAAAAAC+AGG | + | chr3.4:60830789-60830808 | MS.gene008624:intron | 20.0% |
| !!! | TCTTTTTAGTGTAAAAAACA+GGG | + | chr3.4:60830790-60830809 | MS.gene008624:intron | 20.0% |
| !!! | TTGAATAAAGGTATATGATT+AGG | - | chr3.4:60830431-60830450 | None:intergenic | 20.0% |
| ! | ATGTGTCACAAACTTAATTA+AGG | + | chr3.4:60830359-60830378 | MS.gene008624:intron | 25.0% |
| ! | CAATAAACATGACTCAATAT+TGG | + | chr3.4:60830931-60830950 | MS.gene008624:intron | 25.0% |
| ! | GTTATTCAAAATACTGATGT+AGG | + | chr3.4:60830396-60830415 | MS.gene008624:intron | 25.0% |
| ! | TCTGAAAATAGTAATTGCTA+TGG | + | chr3.4:60831219-60831238 | MS.gene008624:CDS | 25.0% |
| ! | TGATAAAAAAAAGGATAGTC+TGG | - | chr3.4:60830888-60830907 | None:intergenic | 25.0% |
| ! | TTAATTAAGGAGAATGATGT+TGG | + | chr3.4:60830372-60830391 | MS.gene008624:intron | 25.0% |
| !! | AAAGGTATATGATTAGGATT+TGG | - | chr3.4:60830425-60830444 | None:intergenic | 25.0% |
| !! | TATCATCTTTTTATTGGACT+TGG | + | chr3.4:60830903-60830922 | MS.gene008624:intron | 25.0% |
| AAACTTGGAACAATATGTGT+AGG | - | chr3.4:60830497-60830516 | None:intergenic | 30.0% | |
| AACTTGGAACAATATGTGTA+GGG | - | chr3.4:60830496-60830515 | None:intergenic | 30.0% | |
| ATAAGATAAAAAGGACAACC+CGG | - | chr3.4:60830771-60830790 | None:intergenic | 30.0% | |
| ATTACAAATGCAACTTGCAA+TGG | + | chr3.4:60831095-60831114 | MS.gene008624:CDS | 30.0% | |
| ATTGTGAAACTTGACTTTGA+AGG | - | chr3.4:60831077-60831096 | None:intergenic | 30.0% | |
| CTCATAATCTTGGAATACAT+TGG | - | chr3.4:60831292-60831311 | None:intergenic | 30.0% | |
| GAAGGAAAGTTAATATACTG+TGG | - | chr3.4:60831252-60831271 | None:intergenic | 30.0% | |
| GTAGAATCAAATTTAGCACA+TGG | - | chr3.4:60830541-60830560 | None:intergenic | 30.0% | |
| GTTGTCATGTGTAAAAAACA+GGG | + | chr3.4:60830672-60830691 | MS.gene008624:intron | 30.0% | |
| TGTTGTCATGTGTAAAAAAC+AGG | + | chr3.4:60830671-60830690 | MS.gene008624:intron | 30.0% | |
| ! | AGAATATAAGGATGATGATG+AGG | - | chr3.4:60830142-60830161 | None:intergenic | 30.0% |
| ! | TTGACTTTGAAGGTATGATA+TGG | - | chr3.4:60831067-60831086 | None:intergenic | 30.0% |
| !!! | ATGTGTAGGGTTTTGAATAA+AGG | - | chr3.4:60830443-60830462 | None:intergenic | 30.0% |
| !!! | ATGTGTAGGGTTTTGAATAA+TGG | - | chr3.4:60830443-60830462 | None:intergenic | 30.0% |
| !!! | TATTGGTATGTTTTGTTTGC+AGG | + | chr3.4:60830948-60830967 | MS.gene008624:intron | 30.0% |
| !!! | TGTGTAGGGTTTTGAATAAT+GGG | - | chr3.4:60830482-60830501 | None:intergenic | 30.0% |
| ACCAAAGACCTTATGAACAA+TGG | - | chr3.4:60830078-60830097 | None:intergenic | 35.0% | |
| AGGTGTACAATACACCAAAA+TGG | + | chr3.4:60830701-60830720 | MS.gene008624:intron | 35.0% | |
| CAAAAAGTCTCTCTCTTAAG+AGG | - | chr3.4:60831315-60831334 | None:intergenic | 35.0% | |
| CAAACTTGGAACAATGTGTA+GGG | - | chr3.4:60830456-60830475 | None:intergenic | 35.0% | |
| CAAGTTTGCCATTGTTCATA+AGG | + | chr3.4:60830067-60830086 | MS.gene008624:CDS | 35.0% | |
| GTACAATACACCAAAATGGT+GGG | + | chr3.4:60830705-60830724 | MS.gene008624:intron | 35.0% | |
| TCAAACTTGGAACAATGTGT+AGG | - | chr3.4:60830457-60830476 | None:intergenic | 35.0% | |
| TCATCTTGATCAACATGTGT+TGG | - | chr3.4:60831183-60831202 | None:intergenic | 35.0% | |
| TCTTAAGAGGCTCATAATCT+TGG | - | chr3.4:60831302-60831321 | None:intergenic | 35.0% | |
| TGTAAAAAACAGGGTAAGCT+AGG | + | chr3.4:60830681-60830700 | MS.gene008624:intron | 35.0% | |
| TGTACAATACACCAAAATGG+TGG | + | chr3.4:60830704-60830723 | MS.gene008624:intron | 35.0% | |
| TTCAAGCCCAAAAAAACTCT+TGG | + | chr3.4:60830515-60830534 | MS.gene008624:intron | 35.0% | |
| TTGGAATACATTGGAAGATG+AGG | - | chr3.4:60831283-60831302 | None:intergenic | 35.0% | |
| ! | AACAATTTGCAAGAAGCACA+AGG | - | chr3.4:60829987-60830006 | None:intergenic | 35.0% |
| ! | ATCTTTTTATTGTACCTGCG+AGG | + | chr3.4:60830626-60830645 | MS.gene008624:intron | 35.0% |
| ! | CTCTTAAGAGAGAGACTTTT+TGG | + | chr3.4:60831313-60831332 | MS.gene008624:CDS | 35.0% |
| !! | AACATGTGTTGGTAATGAGT+TGG | - | chr3.4:60831172-60831191 | None:intergenic | 35.0% |
| !! | TGAATAATGGGCTTCAAACT+TGG | - | chr3.4:60830470-60830489 | None:intergenic | 35.0% |
| !!! | ACATGGCCAAGAGTTTTTTT+GGG | - | chr3.4:60830524-60830543 | None:intergenic | 35.0% |
| !!! | GTTTTTTTGGGCTTGAAACT+TGG | - | chr3.4:60830512-60830531 | None:intergenic | 35.0% |
| AGAGTCAGAGATCCTGTTTA+TGG | + | chr3.4:60831030-60831049 | MS.gene008624:CDS | 40.0% | |
| CAATATCAGCAAAATGCTGC+AGG | + | chr3.4:60830103-60830122 | MS.gene008624:CDS | 40.0% | |
| CGTACAATACACCAAAATGG+TGG | + | chr3.4:60830821-60830840 | MS.gene008624:intron | 40.0% | |
| CTGCGTACAATACACCAAAA+TGG | + | chr3.4:60830818-60830837 | MS.gene008624:intron | 40.0% | |
| GAAGATGAGGAAGAAGAAGA+AGG | - | chr3.4:60831270-60831289 | None:intergenic | 40.0% | |
| GATCCTGTTTATGGATGTGT+TGG | + | chr3.4:60831039-60831058 | MS.gene008624:CDS | 40.0% | |
| GCCATTGTTCATAAGGTCTT+TGG | + | chr3.4:60830074-60830093 | MS.gene008624:CDS | 40.0% | |
| GCTTCCAATTCATCAAAGAG+CGG | + | chr3.4:60830972-60830991 | MS.gene008624:CDS | 40.0% | |
| !! | TAGTAGAGTCTTGTTGCATC+TGG | - | chr3.4:60831143-60831162 | None:intergenic | 40.0% |
| !!! | CACATGGCCAAGAGTTTTTT+TGG | - | chr3.4:60830525-60830544 | None:intergenic | 40.0% |
| GAACAATGGCAAACTTGCGT+GGG | - | chr3.4:60830064-60830083 | None:intergenic | 45.0% | |
| GCTCCAACACATCCATAAAC+AGG | - | chr3.4:60831045-60831064 | None:intergenic | 45.0% | |
| GCTTCCGCTCTTTGATGAAT+TGG | - | chr3.4:60830979-60830998 | None:intergenic | 45.0% | |
| GGGTCATCAGAAGGAAAGTA+AGG | - | chr3.4:60830044-60830063 | None:intergenic | 45.0% | |
| TGAACAATGGCAAACTTGCG+TGG | - | chr3.4:60830065-60830084 | None:intergenic | 45.0% | |
| ! | TTTGCAAGAAGCACAAGGTG+AGG | - | chr3.4:60829982-60830001 | None:intergenic | 45.0% |
| !! | TATATAATCAAATAAAAATT+TGG | + | chr3.4:60830201-60830220 | MS.gene008624:intron | 5.0% |
| AACTTGCGTGGGTCATCAGA+AGG | - | chr3.4:60830053-60830072 | None:intergenic | 50.0% | |
| ATTGTACCTGCGAGGAGACT+TGG | + | chr3.4:60830634-60830653 | MS.gene008624:intron | 50.0% | |
| CATATGCAGACTCCGGAAAG+GGG | - | chr3.4:60830849-60830868 | None:intergenic | 50.0% | |
| GCATATGCAGACTCCGGAAA+GGG | - | chr3.4:60830850-60830869 | None:intergenic | 50.0% | |
| GTTGAGAAGACGTTGCACAC+AGG | + | chr3.4:60830004-60830023 | MS.gene008624:CDS | 50.0% | |
| TGCATATGCAGACTCCGGAA+AGG | - | chr3.4:60830851-60830870 | None:intergenic | 50.0% | |
| TTTCCGGAGTCTGCATATGC+AGG | + | chr3.4:60830850-60830869 | MS.gene008624:intron | 50.0% | |
| ! | AAAATGGTGGGACCCCTTCT+CGG | + | chr3.4:60830717-60830736 | MS.gene008624:intron | 50.0% |
| ! | AAAATGGTGGGACCCCTTTC+CGG | + | chr3.4:60830834-60830853 | MS.gene008624:intron | 50.0% |
| ACTAAAGCTCCCGCATACGC+AGG | - | chr3.4:60830745-60830764 | None:intergenic | 55.0% | |
| CTAAAGCTCCCGCATACGCA+GGG | - | chr3.4:60830744-60830763 | None:intergenic | 55.0% | |
| GCTCCTGCATATGCAGACTC+CGG | - | chr3.4:60830856-60830875 | None:intergenic | 55.0% | |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | + | chr3.4:60830749-60830768 | MS.gene008624:intron | 55.0% |
| ! | GAGAAGGGGTCCCACCATTT+TGG | - | chr3.4:60830718-60830737 | None:intergenic | 55.0% |
| ! | GGAAAGGGGTCCCACCATTT+TGG | - | chr3.4:60830835-60830854 | None:intergenic | 55.0% |
| CATACGCAGGGTCCGAGAAG+GGG | - | chr3.4:60830732-60830751 | None:intergenic | 60.0% | |
| CTTCTCGGACCCTGCGTATG+CGG | + | chr3.4:60830732-60830751 | MS.gene008624:intron | 60.0% | |
| GCATACGCAGGGTCCGAGAA+GGG | - | chr3.4:60830733-60830752 | None:intergenic | 60.0% | |
| TGCGAGGAGACTTGGCGCAA+CGG | + | chr3.4:60830642-60830661 | MS.gene008624:intron | 60.0% | |
| TTCTCGGACCCTGCGTATGC+GGG | + | chr3.4:60830733-60830752 | MS.gene008624:intron | 60.0% | |
| ! | TGCGGGAGCTTTAGTGCACC+GGG | + | chr3.4:60830750-60830769 | MS.gene008624:intron | 60.0% |
| CGCATACGCAGGGTCCGAGA+AGG | - | chr3.4:60830734-60830753 | None:intergenic | 65.0% | |
| GTTGCGCCAAGTCTCCTCGC+AGG | - | chr3.4:60830643-60830662 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 60829966 | 60831341 | 60829966 | ID=MS.gene008624 |
| chr3.4 | mRNA | 60829966 | 60831341 | 60829966 | ID=MS.gene008624.t1;Parent=MS.gene008624 |
| chr3.4 | exon | 60829966 | 60830124 | 60829966 | ID=MS.gene008624.t1.exon1;Parent=MS.gene008624.t1 |
| chr3.4 | CDS | 60829966 | 60830124 | 60829966 | ID=cds.MS.gene008624.t1;Parent=MS.gene008624.t1 |
| chr3.4 | exon | 60830970 | 60831341 | 60830970 | ID=MS.gene008624.t1.exon2;Parent=MS.gene008624.t1 |
| chr3.4 | CDS | 60830970 | 60831341 | 60830970 | ID=cds.MS.gene008624.t1;Parent=MS.gene008624.t1 |
| Gene Sequence |
| Protein sequence |
