Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008648.t1 | XP_013460339.2 | 91.8 | 171 | 14 | 0 | 1 | 171 | 1 | 171 | 4.20E-80 | 307.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008648.t1 | Q9FJK3 | 51.6 | 157 | 71 | 3 | 1 | 155 | 1 | 154 | 7.9e-35 | 148.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008648.t1 | A0A072UL53 | 89.5 | 171 | 18 | 0 | 1 | 171 | 1 | 171 | 9.2e-77 | 295.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene008648.t1 | TF | MADS-M-type |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008648.t1 | MTR_4g063790 | 89.474 | 171 | 18 | 0 | 1 | 171 | 1 | 171 | 2.88e-110 | 311 |
| MS.gene008648.t1 | MTR_3g465410 | 92.308 | 143 | 11 | 0 | 29 | 171 | 1 | 143 | 5.98e-96 | 274 |
| MS.gene008648.t1 | MTR_3g467080 | 78.261 | 161 | 35 | 0 | 1 | 161 | 1 | 161 | 2.40e-89 | 258 |
| MS.gene008648.t1 | MTR_3g466980 | 54.335 | 173 | 74 | 3 | 1 | 170 | 1 | 171 | 1.42e-58 | 182 |
| MS.gene008648.t1 | MTR_3g031240 | 49.693 | 163 | 82 | 0 | 1 | 163 | 1 | 163 | 2.36e-51 | 162 |
| MS.gene008648.t1 | MTR_2g016210 | 46.746 | 169 | 90 | 0 | 1 | 169 | 1 | 169 | 1.93e-50 | 162 |
| MS.gene008648.t1 | MTR_3g065100 | 50.633 | 158 | 77 | 1 | 1 | 158 | 1 | 157 | 3.25e-44 | 146 |
| MS.gene008648.t1 | MTR_3g031100 | 43.195 | 169 | 96 | 0 | 1 | 169 | 1 | 169 | 7.89e-43 | 143 |
| MS.gene008648.t1 | MTR_4g032620 | 40.606 | 165 | 98 | 0 | 1 | 165 | 1 | 165 | 1.40e-41 | 139 |
| MS.gene008648.t1 | MTR_5g075380 | 40.625 | 160 | 88 | 2 | 1 | 157 | 1 | 156 | 1.86e-40 | 134 |
| MS.gene008648.t1 | MTR_8g036130 | 41.916 | 167 | 95 | 1 | 1 | 165 | 1 | 167 | 8.21e-40 | 135 |
| MS.gene008648.t1 | MTR_2g035580 | 45.806 | 155 | 83 | 1 | 1 | 155 | 1 | 154 | 2.34e-37 | 126 |
| MS.gene008648.t1 | MTR_4g031910 | 42.424 | 165 | 95 | 0 | 1 | 165 | 1 | 165 | 5.54e-37 | 127 |
| MS.gene008648.t1 | MTR_5g047580 | 41.139 | 158 | 91 | 2 | 1 | 158 | 1 | 156 | 7.21e-36 | 122 |
| MS.gene008648.t1 | MTR_4g032290 | 42.424 | 165 | 95 | 0 | 1 | 165 | 1 | 165 | 3.62e-35 | 123 |
| MS.gene008648.t1 | MTR_3g466830 | 40.000 | 155 | 92 | 1 | 3 | 157 | 2 | 155 | 1.19e-34 | 119 |
| MS.gene008648.t1 | MTR_1g077390 | 42.138 | 159 | 90 | 2 | 1 | 159 | 1 | 157 | 1.41e-34 | 119 |
| MS.gene008648.t1 | MTR_4g032260 | 40.252 | 159 | 95 | 0 | 1 | 159 | 1 | 159 | 1.23e-33 | 117 |
| MS.gene008648.t1 | MTR_2g035610 | 48.718 | 117 | 60 | 0 | 1 | 117 | 1 | 117 | 1.19e-32 | 113 |
| MS.gene008648.t1 | MTR_1g084950 | 41.139 | 158 | 91 | 2 | 1 | 158 | 1 | 156 | 6.74e-32 | 112 |
| MS.gene008648.t1 | MTR_1g077320 | 41.509 | 159 | 91 | 2 | 1 | 159 | 1 | 157 | 7.02e-32 | 112 |
| MS.gene008648.t1 | MTR_4g028720 | 41.509 | 159 | 91 | 2 | 1 | 159 | 1 | 157 | 9.20e-32 | 112 |
| MS.gene008648.t1 | MTR_1g090783 | 38.816 | 152 | 91 | 2 | 3 | 154 | 2 | 151 | 2.06e-31 | 111 |
| MS.gene008648.t1 | MTR_7g011950 | 40.881 | 159 | 92 | 2 | 1 | 159 | 1 | 157 | 5.31e-31 | 110 |
| MS.gene008648.t1 | MTR_1g077300 | 40.994 | 161 | 91 | 2 | 1 | 161 | 1 | 157 | 2.39e-30 | 108 |
| MS.gene008648.t1 | MTR_1g090710 | 36.364 | 154 | 97 | 1 | 1 | 154 | 1 | 153 | 7.85e-29 | 104 |
| MS.gene008648.t1 | MTR_3g466890 | 37.419 | 155 | 96 | 1 | 3 | 157 | 2 | 155 | 1.15e-28 | 104 |
| MS.gene008648.t1 | MTR_1g090697 | 36.538 | 156 | 93 | 3 | 1 | 154 | 1 | 152 | 1.98e-28 | 103 |
| MS.gene008648.t1 | MTR_5g047560 | 35.714 | 154 | 81 | 3 | 1 | 154 | 1 | 136 | 1.34e-21 | 85.5 |
| MS.gene008648.t1 | MTR_3g466930 | 34.921 | 126 | 81 | 1 | 32 | 157 | 2 | 126 | 4.72e-20 | 81.3 |
| MS.gene008648.t1 | MTR_3g466900 | 34.127 | 126 | 82 | 1 | 32 | 157 | 2 | 126 | 8.16e-20 | 80.9 |
| MS.gene008648.t1 | MTR_4g028800 | 47.945 | 73 | 36 | 1 | 1 | 73 | 1 | 71 | 1.10e-19 | 78.6 |
| MS.gene008648.t1 | MTR_7g055800 | 35.897 | 117 | 47 | 2 | 1 | 117 | 1 | 89 | 2.81e-16 | 70.5 |
| MS.gene008648.t1 | MTR_4g019670 | 30.625 | 160 | 100 | 4 | 1 | 154 | 1 | 155 | 3.65e-16 | 75.5 |
| MS.gene008648.t1 | MTR_7g055790 | 39.450 | 109 | 48 | 3 | 1 | 109 | 59 | 149 | 2.01e-15 | 69.7 |
| MS.gene008648.t1 | MTR_7g106510 | 30.282 | 142 | 87 | 3 | 1 | 139 | 1 | 133 | 2.32e-15 | 73.2 |
| MS.gene008648.t1 | MTR_7g055940 | 35.849 | 106 | 40 | 2 | 1 | 106 | 1 | 78 | 2.94e-14 | 64.7 |
| MS.gene008648.t1 | MTR_3g093900 | 32.323 | 99 | 67 | 0 | 5 | 103 | 8 | 106 | 2.67e-13 | 67.0 |
| MS.gene008648.t1 | MTR_6g018920 | 26.250 | 160 | 103 | 4 | 1 | 154 | 1 | 151 | 2.99e-13 | 66.6 |
| MS.gene008648.t1 | MTR_6g005440 | 28.750 | 160 | 99 | 4 | 1 | 154 | 1 | 151 | 5.64e-12 | 62.8 |
| MS.gene008648.t1 | MTR_1g114730 | 25.786 | 159 | 103 | 4 | 1 | 153 | 1 | 150 | 3.01e-11 | 60.8 |
| MS.gene008648.t1 | MTR_4g084780 | 55.556 | 54 | 24 | 0 | 74 | 127 | 1 | 54 | 8.08e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008648.t1 | AT5G48670 | 51.592 | 157 | 71 | 3 | 1 | 155 | 1 | 154 | 6.13e-41 | 140 |
| MS.gene008648.t1 | AT3G05860 | 42.763 | 152 | 82 | 2 | 1 | 150 | 1 | 149 | 1.52e-32 | 115 |
| MS.gene008648.t1 | AT3G05860 | 39.535 | 172 | 99 | 2 | 1 | 170 | 1 | 169 | 3.67e-32 | 115 |
| MS.gene008648.t1 | AT3G05860 | 39.535 | 172 | 99 | 2 | 1 | 170 | 1 | 169 | 4.72e-32 | 115 |
| MS.gene008648.t1 | AT1G65330 | 40.523 | 153 | 90 | 1 | 3 | 155 | 2 | 153 | 7.82e-31 | 113 |
| MS.gene008648.t1 | AT5G27810 | 53.933 | 89 | 41 | 0 | 29 | 117 | 1 | 89 | 6.88e-30 | 106 |
| MS.gene008648.t1 | AT1G65300 | 38.509 | 161 | 97 | 2 | 3 | 163 | 2 | 160 | 1.58e-28 | 107 |
| MS.gene008648.t1 | AT5G26650 | 44.954 | 109 | 60 | 0 | 5 | 113 | 3 | 111 | 1.85e-26 | 103 |
| MS.gene008648.t1 | AT5G27960 | 44.037 | 109 | 61 | 0 | 5 | 113 | 3 | 111 | 8.17e-26 | 100 |
| MS.gene008648.t1 | AT1G31630 | 36.667 | 150 | 91 | 3 | 3 | 151 | 2 | 148 | 1.45e-25 | 100 |
| MS.gene008648.t1 | AT1G22590 | 39.823 | 113 | 68 | 0 | 1 | 113 | 1 | 113 | 1.14e-24 | 94.4 |
| MS.gene008648.t1 | AT1G31640 | 38.994 | 159 | 83 | 5 | 3 | 155 | 2 | 152 | 2.82e-24 | 98.2 |
| MS.gene008648.t1 | AT5G26630 | 36.364 | 154 | 97 | 1 | 1 | 154 | 1 | 153 | 2.08e-23 | 92.4 |
| MS.gene008648.t1 | AT2G28700 | 30.519 | 154 | 82 | 1 | 1 | 129 | 1 | 154 | 2.55e-20 | 86.3 |
| MS.gene008648.t1 | AT5G06500 | 36.937 | 111 | 66 | 1 | 1 | 111 | 1 | 107 | 8.95e-20 | 83.2 |
| MS.gene008648.t1 | AT2G40210 | 36.634 | 101 | 64 | 0 | 1 | 101 | 1 | 101 | 1.10e-14 | 70.9 |
| MS.gene008648.t1 | AT5G26580 | 37.255 | 102 | 50 | 1 | 1 | 102 | 1 | 88 | 7.78e-14 | 68.6 |
Find 42 sgRNAs with CRISPR-Local
Find 54 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCAAACCATAGAATTTAA+TGG | 0.173791 | 3.4:-60427172 | MS.gene008648:CDS |
| AGTGGTCATTTCCATCTTTC+TGG | 0.183128 | 3.4:+60427210 | None:intergenic |
| CGAATTTCCATTAAATTCTA+TGG | 0.218755 | 3.4:+60427165 | None:intergenic |
| GAGGTTTGGCCATCAGATTC+AGG | 0.258145 | 3.4:-60427367 | MS.gene008648:CDS |
| AAAATCATTAAGATCATCTT+TGG | 0.313774 | 3.4:+60427138 | None:intergenic |
| CGCTACCATGACTAGAAATA+AGG | 0.322931 | 3.4:-60427760 | None:intergenic |
| ATCAAGAGGAGGTTGGAAAT+GGG | 0.388178 | 3.4:-60427051 | MS.gene008648:CDS |
| GATCAAGAGGAGGTTGGAAA+TGG | 0.411170 | 3.4:-60427052 | MS.gene008648:CDS |
| GAAGTGTGATATCTAGGTTT+AGG | 0.426765 | 3.4:-60427339 | MS.gene008648:CDS |
| GGGTCAGAAGTGTGATATCT+AGG | 0.436600 | 3.4:-60427345 | MS.gene008648:CDS |
| TCTAGGTTTAGGAGTTTGCC+TGG | 0.445921 | 3.4:-60427328 | MS.gene008648:CDS |
| TCTTCTTGAGGCAAAGCATT+GGG | 0.447886 | 3.4:-60427270 | MS.gene008648:CDS |
| AGAATTTGAAGGAGGTTGAT+CGG | 0.478161 | 3.4:-60427099 | MS.gene008648:CDS |
| ACAACCCTCGAGTAGAGGTT+TGG | 0.487846 | 3.4:-60427381 | MS.gene008648:CDS |
| GTCTTCTTGAGGCAAAGCAT+TGG | 0.498020 | 3.4:-60427271 | MS.gene008648:CDS |
| TCAAGAGGAGGTTGGAAATG+GGG | 0.500358 | 3.4:-60427050 | MS.gene008648:CDS |
| TGATCGGAAGATGAAAGAAA+TGG | 0.504501 | 3.4:-60427083 | MS.gene008648:CDS |
| AGGTTTGGCCATCAGATTCA+GGG | 0.511068 | 3.4:-60427366 | MS.gene008648:CDS |
| ACGAGCAGTTGAAGAAGCAA+AGG | 0.512962 | 3.4:-60427240 | MS.gene008648:CDS |
| GGAGGATAACATACAGAAAG+AGG | 0.518632 | 3.4:-60427704 | MS.gene008648:CDS |
| TTTCACCTTATTTCTAGTCA+TGG | 0.525434 | 3.4:+60427755 | None:intergenic |
| AATATAATGATCAATGATAG+TGG | 0.535373 | 3.4:+60427192 | None:intergenic |
| AAGGGAGGATACCAGAAAGA+TGG | 0.535884 | 3.4:-60427221 | MS.gene008648:CDS |
| ATCAAAGATCAAGAGGAGGT+TGG | 0.551560 | 3.4:-60427058 | MS.gene008648:CDS |
| GAGGAGGTTGGAAATGGGGT+GGG | 0.563227 | 3.4:-60427046 | MS.gene008648:CDS |
| ACATGCTTCGACTCCACATA+GGG | 0.565466 | 3.4:+60427423 | None:intergenic |
| AGAGGAGGTTGGAAATGGGG+TGG | 0.565910 | 3.4:-60427047 | MS.gene008648:CDS |
| CGAGCAGTTGAAGAAGCAAA+GGG | 0.580872 | 3.4:-60427239 | MS.gene008648:CDS |
| AATGGCAATCAAAGATCAAG+AGG | 0.588543 | 3.4:-60427065 | MS.gene008648:CDS |
| TATTGATGAGAATTTGAAGG+AGG | 0.592173 | 3.4:-60427107 | MS.gene008648:CDS |
| AATGAAATTAGCACCCTATG+TGG | 0.604835 | 3.4:-60427436 | MS.gene008648:CDS |
| GCAAAACAACCCTCGAGTAG+AGG | 0.609086 | 3.4:-60427386 | MS.gene008648:CDS |
| CACATGCTTCGACTCCACAT+AGG | 0.615585 | 3.4:+60427422 | None:intergenic |
| ACATAACATGTGACTCGAAG+AGG | 0.616371 | 3.4:-60427725 | MS.gene008648:CDS |
| CTTCTGACCCCTGAATCTGA+TGG | 0.624024 | 3.4:+60427358 | None:intergenic |
| GATGGCCAAACCTCTACTCG+AGG | 0.634480 | 3.4:+60427376 | None:intergenic |
| GGCAATCAAAGATCAAGAGG+AGG | 0.656411 | 3.4:-60427062 | MS.gene008648:CDS |
| GGTTTGGCCATCAGATTCAG+GGG | 0.657992 | 3.4:-60427365 | MS.gene008648:CDS |
| ATGGCCAAACCTCTACTCGA+GGG | 0.659257 | 3.4:+60427377 | None:intergenic |
| TAACATGTGACTCGAAGAGG+AGG | 0.659370 | 3.4:-60427722 | MS.gene008648:CDS |
| GCAGTTGAAGAAGCAAAGGG+AGG | 0.685834 | 3.4:-60427236 | MS.gene008648:CDS |
| TGGATCAGGAGGTCTTCTTG+AGG | 0.700337 | 3.4:-60427282 | MS.gene008648:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATCATTAAGATCATCTT+TGG | + | chr3.4:60427657-60427676 | None:intergenic | 20.0% |
| !! | AATATAATGATCAATGATAG+TGG | + | chr3.4:60427603-60427622 | None:intergenic | 20.0% |
| !! | ATTCAAACCATAGAATTTAA+TGG | - | chr3.4:60427620-60427639 | MS.gene008648:intron | 20.0% |
| !!! | AAAAAATGTGTGTTATTTCT+AGG | + | chr3.4:60427197-60427216 | None:intergenic | 20.0% |
| !!! | TACATGCTTTATTGAAATTA+TGG | + | chr3.4:60427137-60427156 | None:intergenic | 20.0% |
| !!! | TTTTATTGATGAGAATTTGA+AGG | - | chr3.4:60427682-60427701 | MS.gene008648:intron | 20.0% |
| ! | AATGAACAATATACAATCGA+TGG | + | chr3.4:60427296-60427315 | None:intergenic | 25.0% |
| ! | ACATGAACAAAGTAAAAAGA+TGG | - | chr3.4:60427487-60427506 | MS.gene008648:intron | 25.0% |
| ! | CGAATTTCCATTAAATTCTA+TGG | + | chr3.4:60427630-60427649 | None:intergenic | 25.0% |
| !!! | TGTGTTATTTCTAGGAAAAA+AGG | + | chr3.4:60427189-60427208 | None:intergenic | 25.0% |
| ACATACAGAAAGAGGAAAAA+TGG | - | chr3.4:60427096-60427115 | MS.gene008648:CDS | 30.0% | |
| TATTGATGAGAATTTGAAGG+AGG | - | chr3.4:60427685-60427704 | MS.gene008648:intron | 30.0% | |
| TGAACAAAGTAAAAAGATGG+TGG | - | chr3.4:60427490-60427509 | MS.gene008648:intron | 30.0% | |
| ! | GCTTTATTGAAATTATGGAG+AGG | + | chr3.4:60427132-60427151 | None:intergenic | 30.0% |
| ! | TTTTTACTTTGTTCATGTCC+AGG | + | chr3.4:60427485-60427504 | None:intergenic | 30.0% |
| !!! | GTTGTTTTGCTCTGAAATTA+TGG | + | chr3.4:60427396-60427415 | None:intergenic | 30.0% |
| AATGAAATTAGCACCCTATG+TGG | - | chr3.4:60427356-60427375 | MS.gene008648:CDS | 35.0% | |
| AATGGCAATCAAAGATCAAG+AGG | - | chr3.4:60427727-60427746 | MS.gene008648:CDS | 35.0% | |
| GAAGTGTGATATCTAGGTTT+AGG | - | chr3.4:60427453-60427472 | MS.gene008648:CDS | 35.0% | |
| TGATCGGAAGATGAAAGAAA+TGG | - | chr3.4:60427709-60427728 | MS.gene008648:CDS | 35.0% | |
| ! | AGAATTTGAAGGAGGTTGAT+CGG | - | chr3.4:60427693-60427712 | MS.gene008648:intron | 35.0% |
| !! | AAGTAAAAAGATGGTGGATC+AGG | - | chr3.4:60427496-60427515 | MS.gene008648:intron | 35.0% |
| ACATAACATGTGACTCGAAG+AGG | - | chr3.4:60427067-60427086 | MS.gene008648:CDS | 40.0% | |
| AGTGGTCATTTCCATCTTTC+TGG | + | chr3.4:60427585-60427604 | None:intergenic | 40.0% | |
| ATCAAAGATCAAGAGGAGGT+TGG | - | chr3.4:60427734-60427753 | MS.gene008648:CDS | 40.0% | |
| ATCAAGAGGAGGTTGGAAAT+GGG | - | chr3.4:60427741-60427760 | MS.gene008648:CDS | 40.0% | |
| GGAGGATAACATACAGAAAG+AGG | - | chr3.4:60427088-60427107 | MS.gene008648:CDS | 40.0% | |
| ! | TCTTCTTGAGGCAAAGCATT+GGG | - | chr3.4:60427522-60427541 | MS.gene008648:intron | 40.0% |
| !! | TAAAAAGATGGTGGATCAGG+AGG | - | chr3.4:60427499-60427518 | MS.gene008648:intron | 40.0% |
| AAGGGAGGATACCAGAAAGA+TGG | - | chr3.4:60427571-60427590 | MS.gene008648:intron | 45.0% | |
| ACATGCTTCGACTCCACATA+GGG | + | chr3.4:60427372-60427391 | None:intergenic | 45.0% | |
| ACGAGCAGTTGAAGAAGCAA+AGG | - | chr3.4:60427552-60427571 | MS.gene008648:intron | 45.0% | |
| AGGTTTGGCCATCAGATTCA+GGG | - | chr3.4:60427426-60427445 | MS.gene008648:CDS | 45.0% | |
| CGAGCAGTTGAAGAAGCAAA+GGG | - | chr3.4:60427553-60427572 | MS.gene008648:intron | 45.0% | |
| GATCAAGAGGAGGTTGGAAA+TGG | - | chr3.4:60427740-60427759 | MS.gene008648:CDS | 45.0% | |
| GGCAATCAAAGATCAAGAGG+AGG | - | chr3.4:60427730-60427749 | MS.gene008648:CDS | 45.0% | |
| GTCTTCTTGAGGCAAAGCAT+TGG | - | chr3.4:60427521-60427540 | MS.gene008648:intron | 45.0% | |
| TAACATGTGACTCGAAGAGG+AGG | - | chr3.4:60427070-60427089 | MS.gene008648:CDS | 45.0% | |
| TCAAGAGGAGGTTGGAAATG+GGG | - | chr3.4:60427742-60427761 | MS.gene008648:CDS | 45.0% | |
| TCTAGGTTTAGGAGTTTGCC+TGG | - | chr3.4:60427464-60427483 | MS.gene008648:intron | 45.0% | |
| ! | GGGTCAGAAGTGTGATATCT+AGG | - | chr3.4:60427447-60427466 | MS.gene008648:CDS | 45.0% |
| !!! | ATATAGATTTTTTTTTTAAT+AGG | - | chr3.4:60427317-60427336 | MS.gene008648:CDS | 5.0% |
| ACAACCCTCGAGTAGAGGTT+TGG | - | chr3.4:60427411-60427430 | MS.gene008648:CDS | 50.0% | |
| ATGGCCAAACCTCTACTCGA+GGG | + | chr3.4:60427418-60427437 | None:intergenic | 50.0% | |
| CACATGCTTCGACTCCACAT+AGG | + | chr3.4:60427373-60427392 | None:intergenic | 50.0% | |
| CTTCTGACCCCTGAATCTGA+TGG | + | chr3.4:60427437-60427456 | None:intergenic | 50.0% | |
| GAGGTTTGGCCATCAGATTC+AGG | - | chr3.4:60427425-60427444 | MS.gene008648:CDS | 50.0% | |
| GCAAAACAACCCTCGAGTAG+AGG | - | chr3.4:60427406-60427425 | MS.gene008648:CDS | 50.0% | |
| GCAGTTGAAGAAGCAAAGGG+AGG | - | chr3.4:60427556-60427575 | MS.gene008648:intron | 50.0% | |
| GGTTTGGCCATCAGATTCAG+GGG | - | chr3.4:60427427-60427446 | MS.gene008648:CDS | 50.0% | |
| TGGATCAGGAGGTCTTCTTG+AGG | - | chr3.4:60427510-60427529 | MS.gene008648:intron | 50.0% | |
| AGAGGAGGTTGGAAATGGGG+TGG | - | chr3.4:60427745-60427764 | MS.gene008648:CDS | 55.0% | |
| GAGGAGGTTGGAAATGGGGT+GGG | - | chr3.4:60427746-60427765 | MS.gene008648:CDS | 55.0% | |
| GATGGCCAAACCTCTACTCG+AGG | + | chr3.4:60427419-60427438 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 60427039 | 60427775 | 60427039 | ID=MS.gene008648 |
| chr3.4 | mRNA | 60427039 | 60427775 | 60427039 | ID=MS.gene008648.t1;Parent=MS.gene008648 |
| chr3.4 | exon | 60427697 | 60427775 | 60427697 | ID=MS.gene008648.t1.exon1;Parent=MS.gene008648.t1 |
| chr3.4 | CDS | 60427697 | 60427775 | 60427697 | ID=cds.MS.gene008648.t1;Parent=MS.gene008648.t1 |
| chr3.4 | exon | 60427039 | 60427475 | 60427039 | ID=MS.gene008648.t1.exon2;Parent=MS.gene008648.t1 |
| chr3.4 | CDS | 60427039 | 60427475 | 60427039 | ID=cds.MS.gene008648.t1;Parent=MS.gene008648.t1 |
| Gene Sequence |
| Protein sequence |
