Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008657.t1 | XP_024634655.1 | 76.3 | 219 | 37 | 1 | 8 | 226 | 1 | 204 | 4.40E-77 | 297.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008657.t1 | Q5JMK6 | 44.2 | 95 | 53 | 0 | 108 | 202 | 137 | 231 | 1.2e-11 | 71.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008657.t1 | A0A1S3E8J2 | 46.4 | 250 | 104 | 6 | 1 | 222 | 17 | 264 | 3.3e-42 | 181.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene008657.t1 | TF | bZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008657.t1 | MTR_3g465280 | 69.333 | 75 | 19 | 3 | 22 | 95 | 9 | 80 | 2.29e-26 | 103 |
| MS.gene008657.t1 | MTR_3g465280 | 42.017 | 119 | 59 | 5 | 1 | 117 | 83 | 193 | 1.04e-17 | 80.1 |
| MS.gene008657.t1 | MTR_4g079500 | 43.158 | 95 | 54 | 0 | 108 | 202 | 194 | 288 | 3.01e-18 | 82.0 |
| MS.gene008657.t1 | MTR_2g090900 | 42.105 | 95 | 55 | 0 | 108 | 202 | 191 | 285 | 2.65e-17 | 79.7 |
| MS.gene008657.t1 | MTR_2g090900 | 42.105 | 95 | 55 | 0 | 108 | 202 | 191 | 285 | 3.50e-17 | 79.0 |
| MS.gene008657.t1 | MTR_5g075390 | 33.858 | 127 | 76 | 1 | 82 | 200 | 125 | 251 | 5.63e-13 | 67.4 |
| MS.gene008657.t1 | MTR_6g034945 | 38.182 | 110 | 68 | 0 | 107 | 216 | 150 | 259 | 1.49e-12 | 65.9 |
| MS.gene008657.t1 | MTR_3g467120 | 39.362 | 94 | 57 | 0 | 107 | 200 | 176 | 269 | 1.76e-12 | 66.2 |
| MS.gene008657.t1 | MTR_4g072090 | 36.449 | 107 | 68 | 0 | 104 | 210 | 356 | 462 | 4.39e-12 | 65.1 |
| MS.gene008657.t1 | MTR_2g099050 | 35.644 | 101 | 65 | 0 | 107 | 207 | 220 | 320 | 5.17e-12 | 64.7 |
| MS.gene008657.t1 | MTR_3g094020 | 32.237 | 152 | 92 | 3 | 58 | 200 | 51 | 200 | 6.02e-12 | 64.3 |
| MS.gene008657.t1 | MTR_3g465350 | 30.882 | 136 | 88 | 2 | 88 | 217 | 32 | 167 | 5.96e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008657.t1 | AT2G42380 | 43.434 | 99 | 56 | 0 | 107 | 205 | 185 | 283 | 9.92e-20 | 86.3 |
| MS.gene008657.t1 | AT3G58120 | 42.105 | 95 | 55 | 0 | 108 | 202 | 202 | 296 | 4.74e-18 | 81.6 |
| MS.gene008657.t1 | AT2G42380 | 46.250 | 80 | 43 | 0 | 107 | 186 | 185 | 264 | 1.57e-16 | 76.6 |
| MS.gene008657.t1 | AT3G58120 | 44.304 | 79 | 44 | 0 | 108 | 186 | 202 | 280 | 1.41e-15 | 74.3 |
| MS.gene008657.t1 | AT2G42380 | 37.374 | 99 | 51 | 1 | 107 | 205 | 185 | 272 | 1.40e-13 | 68.9 |
| MS.gene008657.t1 | AT2G40620 | 39.362 | 94 | 57 | 0 | 107 | 200 | 147 | 240 | 2.62e-12 | 65.5 |
| MS.gene008657.t1 | AT1G43700 | 40.426 | 94 | 56 | 0 | 107 | 200 | 193 | 286 | 2.66e-12 | 65.5 |
| MS.gene008657.t1 | AT1G06850 | 40.426 | 94 | 56 | 0 | 107 | 200 | 147 | 240 | 3.91e-12 | 65.1 |
| MS.gene008657.t1 | AT4G38900 | 37.634 | 93 | 58 | 0 | 108 | 200 | 394 | 486 | 5.45e-12 | 65.1 |
| MS.gene008657.t1 | AT4G38900 | 37.634 | 93 | 58 | 0 | 108 | 200 | 394 | 486 | 5.45e-12 | 65.1 |
| MS.gene008657.t1 | AT2G31370 | 36.538 | 104 | 66 | 0 | 107 | 210 | 200 | 303 | 8.50e-12 | 64.3 |
| MS.gene008657.t1 | AT1G06070 | 38.542 | 96 | 59 | 0 | 107 | 202 | 209 | 304 | 9.18e-12 | 64.3 |
| MS.gene008657.t1 | AT2G31370 | 31.538 | 130 | 87 | 1 | 81 | 210 | 176 | 303 | 1.11e-11 | 63.9 |
| MS.gene008657.t1 | AT2G31370 | 31.538 | 130 | 87 | 1 | 81 | 210 | 176 | 303 | 1.11e-11 | 63.9 |
| MS.gene008657.t1 | AT2G31370 | 31.538 | 130 | 87 | 1 | 81 | 210 | 176 | 303 | 1.11e-11 | 63.9 |
| MS.gene008657.t1 | AT2G31370 | 31.538 | 130 | 87 | 1 | 81 | 210 | 176 | 303 | 1.11e-11 | 63.9 |
| MS.gene008657.t1 | AT2G31370 | 31.538 | 130 | 87 | 1 | 81 | 210 | 176 | 303 | 1.11e-11 | 63.9 |
| MS.gene008657.t1 | AT2G31370 | 31.538 | 130 | 87 | 1 | 81 | 210 | 176 | 303 | 1.11e-11 | 63.9 |
| MS.gene008657.t1 | AT5G07160 | 39.785 | 93 | 56 | 0 | 108 | 200 | 48 | 140 | 1.26e-11 | 60.8 |
| MS.gene008657.t1 | AT2G21230 | 37.113 | 97 | 61 | 0 | 104 | 200 | 366 | 462 | 5.49e-11 | 62.0 |
| MS.gene008657.t1 | AT2G21230 | 37.113 | 97 | 61 | 0 | 104 | 200 | 366 | 462 | 5.49e-11 | 62.0 |
Find 50 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCAATTTCAAGTCTTAAT+TGG | 0.219386 | 3.4:-60273717 | None:intergenic |
| TCATGACCAAGATTTGATTT+TGG | 0.228252 | 3.4:-60272411 | None:intergenic |
| GCTCGATTATATTGCTGATT+TGG | 0.235809 | 3.4:+60273060 | MS.gene008657:CDS |
| TTGTACTAGTCATTCTCTTT+AGG | 0.276377 | 3.4:-60272197 | None:intergenic |
| GCATACCGTTTGAGCCTCTT+TGG | 0.280869 | 3.4:-60272510 | None:intergenic |
| TTTCTTTAACCAGTTCAAAT+TGG | 0.283027 | 3.4:+60274990 | MS.gene008657:intron |
| CTAACCGTGTTTGATTTCTT+AGG | 0.332837 | 3.4:-60272249 | None:intergenic |
| ATAAGAGAGCTGAGGTGAAT+AGG | 0.348904 | 3.4:+60274064 | MS.gene008657:CDS |
| TCAGCAGTGGTTGTTGACTA+TGG | 0.374097 | 3.4:+60273687 | MS.gene008657:CDS |
| GCGGAAGGAGAAATATTTGC+AGG | 0.408355 | 3.4:+60273084 | MS.gene008657:CDS |
| TTCGACCATGGCAACCCTCT+TGG | 0.414113 | 3.4:+60272301 | MS.gene008657:CDS |
| TCGATTTATGTGCAGAAGTC+CGG | 0.429998 | 3.4:-60273027 | None:intergenic |
| AGTGTACCAAAATCAAATCT+TGG | 0.459311 | 3.4:+60272405 | MS.gene008657:CDS |
| TTCTTAGGATCCTAGCAAAC+CGG | 0.464383 | 3.4:+60273008 | MS.gene008657:intron |
| GTGCAGAAGTCCGGTTTGCT+AGG | 0.487114 | 3.4:-60273018 | None:intergenic |
| TGGATCCAAAGAGGCTCAAA+CGG | 0.511736 | 3.4:+60272505 | MS.gene008657:CDS |
| CAATTTCAAGTCTTAATTGG+TGG | 0.516892 | 3.4:-60273714 | None:intergenic |
| AAACAAGAGGCGAGTAGTAG+TGG | 0.519978 | 3.4:+60272342 | MS.gene008657:CDS |
| GAGCTGAGGTGAATAGGCTG+AGG | 0.526514 | 3.4:+60274070 | MS.gene008657:CDS |
| TATTGCTGATTTGGAGCGGA+AGG | 0.534850 | 3.4:+60273069 | MS.gene008657:CDS |
| AGACTTCAACTTGTGGGCGA+AGG | 0.537269 | 3.4:-60273657 | None:intergenic |
| AACATGTTGCACACAGAAGA+GGG | 0.550817 | 3.4:+60272219 | MS.gene008657:CDS |
| TTGCACACAGAAGAGGGACC+TGG | 0.552875 | 3.4:+60272225 | MS.gene008657:CDS |
| GATTGAGAATAAGAGAGCTG+AGG | 0.559603 | 3.4:+60274056 | MS.gene008657:CDS |
| CTCTTCCAAGAGGGTTGCCA+TGG | 0.560623 | 3.4:-60272306 | None:intergenic |
| GCATCTGCATGTGTTGGTGT+TGG | 0.564639 | 3.4:+60272462 | MS.gene008657:CDS |
| GGTAGTGCATCTGCATGTGT+TGG | 0.568494 | 3.4:+60272456 | MS.gene008657:CDS |
| GTGTTTGATTTCTTAGGCCC+AGG | 0.570117 | 3.4:-60272243 | None:intergenic |
| CATCATCAGCATTTCGACCA+TGG | 0.570443 | 3.4:+60272289 | MS.gene008657:CDS |
| TGCACACAGAAGAGGGACCT+GGG | 0.596481 | 3.4:+60272226 | MS.gene008657:CDS |
| ACGGTTAGACCCTTCTCACA+TGG | 0.599058 | 3.4:+60272264 | MS.gene008657:CDS |
| TTGCTGAAGCACAAATCAAG+AGG | 0.599181 | 3.4:+60274112 | MS.gene008657:CDS |
| AAACATGTTGCACACAGAAG+AGG | 0.606246 | 3.4:+60272218 | MS.gene008657:CDS |
| TCTTGGAAGAGCATTGATCT+CGG | 0.606454 | 3.4:+60272318 | MS.gene008657:CDS |
| AGCTGAGGTGAATAGGCTGA+GGG | 0.614102 | 3.4:+60274071 | MS.gene008657:CDS |
| GATGATGATCCATGTGAGAA+GGG | 0.623366 | 3.4:-60272273 | None:intergenic |
| AAAGAAAGGATACTTCAAGA+AGG | 0.624481 | 3.4:+60273748 | MS.gene008657:CDS |
| TTAACCAGTTCAAATTGGAG+AGG | 0.630593 | 3.4:+60274995 | MS.gene008657:intron |
| CATTGATCTCGGTAAACAAG+AGG | 0.637168 | 3.4:+60272329 | MS.gene008657:CDS |
| ATGCACTACCACCACTGATG+TGG | 0.638397 | 3.4:-60272443 | None:intergenic |
| TGATGATGATCCATGTGAGA+AGG | 0.644091 | 3.4:-60272274 | None:intergenic |
| GAGATCAATGCTCTTCCAAG+AGG | 0.648150 | 3.4:-60272316 | None:intergenic |
| GATGAGAAGAACCACATCAG+TGG | 0.648937 | 3.4:+60272432 | MS.gene008657:CDS |
| AGATCAATGCTCTTCCAAGA+GGG | 0.649791 | 3.4:-60272315 | None:intergenic |
| ATTATATTGCTGATTTGGAG+CGG | 0.651960 | 3.4:+60273065 | MS.gene008657:CDS |
| GAGAAGAACCACATCAGTGG+TGG | 0.658310 | 3.4:+60272435 | MS.gene008657:CDS |
| AAATTGGAGAGGAAGCATCA+AGG | 0.662446 | 3.4:+60275006 | MS.gene008657:CDS |
| GGAGTCAAAGTAACTCCACA+AGG | 0.691028 | 3.4:+60272363 | MS.gene008657:CDS |
| GGACTTCTGCACATAAATCG+AGG | 0.709430 | 3.4:+60273029 | MS.gene008657:CDS |
| TGGGCCTAAGAAATCAAACA+CGG | 0.749791 | 3.4:+60272245 | MS.gene008657:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTTTTATTAAAAATA+AGG | - | chr3.4:60272777-60272796 | None:intergenic | 0.0% |
| !! | AATTTATTTCAATTTCAATT+TGG | - | chr3.4:60273266-60273285 | None:intergenic | 10.0% |
| !! | ATTAAAATAAATCTATATGT+TGG | + | chr3.4:60272792-60272811 | MS.gene008657:intron | 10.0% |
| !!! | AGTATTTTTAACAATATTTT+TGG | + | chr3.4:60274153-60274172 | MS.gene008657:intron | 10.0% |
| !! | AAGAAAACAAAATCTAATAA+TGG | + | chr3.4:60272675-60272694 | MS.gene008657:intron | 15.0% |
| !! | AGAAAACAAAATCTAATAAT+GGG | + | chr3.4:60272676-60272695 | MS.gene008657:intron | 15.0% |
| !! | GTCAATTATTTGTATTAATT+TGG | + | chr3.4:60273366-60273385 | MS.gene008657:intron | 15.0% |
| !! | TAATAAAGAAACATATGTTA+TGG | - | chr3.4:60274828-60274847 | None:intergenic | 15.0% |
| !! | TATCATACATGATAAAAATA+TGG | + | chr3.4:60274240-60274259 | MS.gene008657:intron | 15.0% |
| !!! | ATTTTAAAACAATCAATGTA+AGG | - | chr3.4:60274357-60274376 | None:intergenic | 15.0% |
| !!! | GAATTTTTAAACAACAATTT+AGG | - | chr3.4:60274197-60274216 | None:intergenic | 15.0% |
| !!! | TTTTAAAACAATCAATGTAA+GGG | - | chr3.4:60274356-60274375 | None:intergenic | 15.0% |
| !!! | TTTTGTTTCAATTTTTTCAA+TGG | - | chr3.4:60272917-60272936 | None:intergenic | 15.0% |
| !! | AAAATTGAAACAAAATACCT+CGG | + | chr3.4:60272922-60272941 | MS.gene008657:intron | 20.0% |
| !! | ACAATTGAATTCAAAATTAC+AGG | - | chr3.4:60273461-60273480 | None:intergenic | 20.0% |
| !! | AGATTAAACTGTTCAAATTA+AGG | - | chr3.4:60274655-60274674 | None:intergenic | 20.0% |
| !! | ATAGATCAATTATGATTGAA+TGG | - | chr3.4:60273427-60273446 | None:intergenic | 20.0% |
| !!! | AATTTTGTGATTTATTACAG+CGG | + | chr3.4:60274708-60274727 | MS.gene008657:intron | 20.0% |
| !!! | ATATTATATCGATTATGTGT+AGG | - | chr3.4:60272958-60272977 | None:intergenic | 20.0% |
| !!! | CAAATGATATGTAGTTATTT+TGG | - | chr3.4:60273922-60273941 | None:intergenic | 20.0% |
| !!! | GATTTTTTTTTTGTATATGC+AGG | + | chr3.4:60273621-60273640 | MS.gene008657:intron | 20.0% |
| !!! | TAAATTTGTCTTTTCTTTCA+AGG | - | chr3.4:60274466-60274485 | None:intergenic | 20.0% |
| !!! | TATTAGATTTTGTTTTCTTC+AGG | - | chr3.4:60272674-60272693 | None:intergenic | 20.0% |
| ! | AACATACTCATGTGAAATAA+AGG | - | chr3.4:60274023-60274042 | None:intergenic | 25.0% |
| ! | CAAATCAACTATATTAGTCA+GGG | - | chr3.4:60272867-60272886 | None:intergenic | 25.0% |
| ! | CATAACACTAAAAGTTTGAT+GGG | + | chr3.4:60272612-60272631 | MS.gene008657:intron | 25.0% |
| ! | GTATAAACACTCGAAATAAA+TGG | - | chr3.4:60273830-60273849 | None:intergenic | 25.0% |
| ! | GTCAATATGAATATGTAAGT+AGG | - | chr3.4:60274783-60274802 | None:intergenic | 25.0% |
| ! | TATGAATATGTAAGTAGGTA+CGG | - | chr3.4:60274778-60274797 | None:intergenic | 25.0% |
| ! | TCAAATCAACTATATTAGTC+AGG | - | chr3.4:60272868-60272887 | None:intergenic | 25.0% |
| ! | TCATAACACTAAAAGTTTGA+TGG | + | chr3.4:60272611-60272630 | MS.gene008657:intron | 25.0% |
| ! | TGACATTCAATTAACATAGT+GGG | + | chr3.4:60274799-60274818 | MS.gene008657:intron | 25.0% |
| ! | TGATAGAAAGTGAGAAAATA+TGG | + | chr3.4:60274311-60274330 | MS.gene008657:intron | 25.0% |
| ! | TTGACATTCAATTAACATAG+TGG | + | chr3.4:60274798-60274817 | MS.gene008657:intron | 25.0% |
| ! | TTGTATACAGATATATGTTG+AGG | + | chr3.4:60274490-60274509 | MS.gene008657:intron | 25.0% |
| ! | TTTCTTTAACCAGTTCAAAT+TGG | + | chr3.4:60274990-60275009 | MS.gene008657:intron | 25.0% |
| !! | ATTTTGTGATTTATTACAGC+GGG | + | chr3.4:60274709-60274728 | MS.gene008657:intron | 25.0% |
| !! | CAAATTGAAATTCTTTGAAG+TGG | - | chr3.4:60273347-60273366 | None:intergenic | 25.0% |
| !! | TTTTATAGACTTCAACTTGT+GGG | - | chr3.4:60273666-60273685 | None:intergenic | 25.0% |
| !! | TTTTTATAGACTTCAACTTG+TGG | - | chr3.4:60273667-60273686 | None:intergenic | 25.0% |
| !!! | AAATTCTTTGAAGTGGTAAT+CGG | - | chr3.4:60273340-60273359 | None:intergenic | 25.0% |
| !!! | ATGAGTATGTTTATTTTCAG+TGG | + | chr3.4:60274032-60274051 | MS.gene008657:intron | 25.0% |
| !!! | TTTCATGTTGTTTTGCTATT+TGG | - | chr3.4:60274689-60274708 | None:intergenic | 25.0% |
| AAAGAAAGGATACTTCAAGA+AGG | + | chr3.4:60273748-60273767 | MS.gene008657:CDS | 30.0% | |
| AAGTCTATAAAAATCAGCAG+TGG | + | chr3.4:60273674-60273693 | MS.gene008657:CDS | 30.0% | |
| AGTGAGAAAATATGGATAGA+AGG | + | chr3.4:60274319-60274338 | MS.gene008657:intron | 30.0% | |
| AGTGTACCAAAATCAAATCT+TGG | + | chr3.4:60272405-60272424 | MS.gene008657:CDS | 30.0% | |
| ATACAGATATATGTTGAGGT+TGG | + | chr3.4:60274494-60274513 | MS.gene008657:intron | 30.0% | |
| ATGAATATGTAAGTAGGTAC+GGG | - | chr3.4:60274777-60274796 | None:intergenic | 30.0% | |
| CAGTTGGCAAGTTAAAAATA+TGG | + | chr3.4:60272570-60272589 | MS.gene008657:intron | 30.0% | |
| GTTTATACATAGACACACAT+AGG | + | chr3.4:60273842-60273861 | MS.gene008657:intron | 30.0% | |
| TAATGGGAGTTGTTCTATTT+AGG | + | chr3.4:60272692-60272711 | MS.gene008657:intron | 30.0% | |
| TGATCAAGCAATACAAAAAC+TGG | + | chr3.4:60272485-60272504 | MS.gene008657:CDS | 30.0% | |
| TTGTACTAGTCATTCTCTTT+AGG | - | chr3.4:60272200-60272219 | None:intergenic | 30.0% | |
| ! | CAATTTCAAGTCTTAATTGG+TGG | - | chr3.4:60273717-60273736 | None:intergenic | 30.0% |
| ! | CAGCAATTTCAAGTCTTAAT+TGG | - | chr3.4:60273720-60273739 | None:intergenic | 30.0% |
| ! | GAATTTTCTACTGTTAGAAC+AGG | + | chr3.4:60274558-60274577 | MS.gene008657:intron | 30.0% |
| ! | TCTCTTCACAAGTTTTTGTT+TGG | - | chr3.4:60273592-60273611 | None:intergenic | 30.0% |
| ! | TTTTGTCTTCCATTGTTCTT+AGG | + | chr3.4:60272993-60273012 | MS.gene008657:intron | 30.0% |
| !! | AGTTTTTGTTTGGGTAGATA+TGG | - | chr3.4:60273582-60273601 | None:intergenic | 30.0% |
| !! | ATTATATTGCTGATTTGGAG+CGG | + | chr3.4:60273065-60273084 | MS.gene008657:CDS | 30.0% |
| !! | CTCTTCACAAGTTTTTGTTT+GGG | - | chr3.4:60273591-60273610 | None:intergenic | 30.0% |
| !! | TCATGACCAAGATTTGATTT+TGG | - | chr3.4:60272414-60272433 | None:intergenic | 30.0% |
| !!! | TTATTAGTTTTGTTGCCTTG+TGG | - | chr3.4:60272381-60272400 | None:intergenic | 30.0% |
| AAAATTCAGACCGAAAAGCA+GGG | - | chr3.4:60274545-60274564 | None:intergenic | 35.0% | |
| ACAAGAGTGGTATGGAAAAA+AGG | + | chr3.4:60273980-60273999 | MS.gene008657:intron | 35.0% | |
| ACATGTTGCATTTATGTGTG+GGG | - | chr3.4:60273887-60273906 | None:intergenic | 35.0% | |
| ATACAGAATGTGTACAAGAG+TGG | + | chr3.4:60273967-60273986 | MS.gene008657:intron | 35.0% | |
| ATTTATGTGTGGGGGTTAAA+GGG | - | chr3.4:60273878-60273897 | None:intergenic | 35.0% | |
| CACATGTTGCATTTATGTGT+GGG | - | chr3.4:60273888-60273907 | None:intergenic | 35.0% | |
| CTCTTGTACACATTCTGTAT+AGG | - | chr3.4:60273967-60273986 | None:intergenic | 35.0% | |
| GATTCTCATCTAAAGATCAC+AGG | - | chr3.4:60273220-60273239 | None:intergenic | 35.0% | |
| TACAAAAACTGGATCCAAAG+AGG | + | chr3.4:60272496-60272515 | MS.gene008657:CDS | 35.0% | |
| TATACATAGACACACATAGG+TGG | + | chr3.4:60273845-60273864 | MS.gene008657:intron | 35.0% | |
| TCACTATCTATCGTATCTCA+AGG | + | chr3.4:60273113-60273132 | MS.gene008657:intron | 35.0% | |
| TGAGCAACACAAAAATCAGT+TGG | + | chr3.4:60272554-60272573 | MS.gene008657:intron | 35.0% | |
| TGTACACATTCTGTATAGGA+GGG | - | chr3.4:60273963-60273982 | None:intergenic | 35.0% | |
| TGTTCTATTTAGGCTTGTCA+TGG | + | chr3.4:60272702-60272721 | MS.gene008657:intron | 35.0% | |
| TGTTTGATCCTAACCAACAA+GGG | + | chr3.4:60273543-60273562 | MS.gene008657:intron | 35.0% | |
| TTAACCAGTTCAAATTGGAG+AGG | + | chr3.4:60274995-60275014 | MS.gene008657:intron | 35.0% | |
| TTGCTGTCAGAGAAAAAGAA+AGG | + | chr3.4:60273734-60273753 | MS.gene008657:CDS | 35.0% | |
| TTGTACACATTCTGTATAGG+AGG | - | chr3.4:60273964-60273983 | None:intergenic | 35.0% | |
| TTGTTTGATCCTAACCAACA+AGG | + | chr3.4:60273542-60273561 | MS.gene008657:intron | 35.0% | |
| TTTGTTTGGGTAGATATGGT+GGG | - | chr3.4:60273578-60273597 | None:intergenic | 35.0% | |
| ! | AAATGCAACATGTGGTAATG+TGG | + | chr3.4:60273894-60273913 | MS.gene008657:intron | 35.0% |
| ! | AATGCAACATGTGGTAATGT+GGG | + | chr3.4:60273895-60273914 | MS.gene008657:intron | 35.0% |
| ! | CTAACCGTGTTTGATTTCTT+AGG | - | chr3.4:60272252-60272271 | None:intergenic | 35.0% |
| ! | GCTCGATTATATTGCTGATT+TGG | + | chr3.4:60273060-60273079 | MS.gene008657:CDS | 35.0% |
| ! | TTAGCCACACATTTAAGATC+TGG | - | chr3.4:60274606-60274625 | None:intergenic | 35.0% |
| !! | TTTTGTTTGGGTAGATATGG+TGG | - | chr3.4:60273579-60273598 | None:intergenic | 35.0% |
| AAACATGTTGCACACAGAAG+AGG | + | chr3.4:60272218-60272237 | MS.gene008657:CDS | 40.0% | |
| AAATTCAGACCGAAAAGCAG+GGG | - | chr3.4:60274544-60274563 | None:intergenic | 40.0% | |
| AACATGTTGCACACAGAAGA+GGG | + | chr3.4:60272219-60272238 | MS.gene008657:CDS | 40.0% | |
| ACCTCCAGATCTTAAATGTG+TGG | + | chr3.4:60274599-60274618 | MS.gene008657:intron | 40.0% | |
| AGAGAAAATCACTAAGGAGG+AGG | - | chr3.4:60274754-60274773 | None:intergenic | 40.0% | |
| AGATCAATGCTCTTCCAAGA+GGG | - | chr3.4:60272318-60272337 | None:intergenic | 40.0% | |
| ATAAGAGAGCTGAGGTGAAT+AGG | + | chr3.4:60274064-60274083 | MS.gene008657:CDS | 40.0% | |
| CAGATATATGTTGAGGTTGG+TGG | + | chr3.4:60274497-60274516 | MS.gene008657:intron | 40.0% | |
| CATGTTGCATTTATGTGTGG+GGG | - | chr3.4:60273886-60273905 | None:intergenic | 40.0% | |
| CATTGATCTCGGTAAACAAG+AGG | + | chr3.4:60272329-60272348 | MS.gene008657:CDS | 40.0% | |
| CATTTATGTGTGGGGGTTAA+AGG | - | chr3.4:60273879-60273898 | None:intergenic | 40.0% | |
| CCACACATAAATGCAACATG+TGG | + | chr3.4:60273886-60273905 | MS.gene008657:intron | 40.0% | |
| CCACATGTTGCATTTATGTG+TGG | - | chr3.4:60273889-60273908 | None:intergenic | 40.0% | |
| CGAAACTACACACAAACACA+AGG | - | chr3.4:60274271-60274290 | None:intergenic | 40.0% | |
| GAAAATTCAGACCGAAAAGC+AGG | - | chr3.4:60274546-60274565 | None:intergenic | 40.0% | |
| GAATGTGTACAAGAGTGGTA+TGG | + | chr3.4:60273972-60273991 | MS.gene008657:intron | 40.0% | |
| GAGAAAATCACTAAGGAGGA+GGG | - | chr3.4:60274753-60274772 | None:intergenic | 40.0% | |
| GATGATGATCCATGTGAGAA+GGG | - | chr3.4:60272276-60272295 | None:intergenic | 40.0% | |
| GATTGAGAATAAGAGAGCTG+AGG | + | chr3.4:60274056-60274075 | MS.gene008657:CDS | 40.0% | |
| GTGTAGGAAATAAACAACCG+AGG | - | chr3.4:60272942-60272961 | None:intergenic | 40.0% | |
| TACGGGAGAGAAAATCACTA+AGG | - | chr3.4:60274760-60274779 | None:intergenic | 40.0% | |
| TCGATTTATGTGCAGAAGTC+CGG | - | chr3.4:60273030-60273049 | None:intergenic | 40.0% | |
| TGCTAGGATCCTAAGAACAA+TGG | - | chr3.4:60273005-60273024 | None:intergenic | 40.0% | |
| TGGGCCTAAGAAATCAAACA+CGG | + | chr3.4:60272245-60272264 | MS.gene008657:CDS | 40.0% | |
| TTCTTAGGATCCTAGCAAAC+CGG | + | chr3.4:60273008-60273027 | MS.gene008657:intron | 40.0% | |
| TTGCTGAAGCACAAATCAAG+AGG | + | chr3.4:60274112-60274131 | MS.gene008657:CDS | 40.0% | |
| TTTATGTGTGGGGGTTAAAG+GGG | - | chr3.4:60273877-60273896 | None:intergenic | 40.0% | |
| TTTATTACAGCGGGCAATCT+TGG | + | chr3.4:60274718-60274737 | MS.gene008657:intron | 40.0% | |
| ! | ATATGGATCCCTTGTTGGTT+AGG | - | chr3.4:60273554-60273573 | None:intergenic | 40.0% |
| ! | CTATTGCTCTAGATGTAGAG+CGG | + | chr3.4:60273314-60273333 | MS.gene008657:intron | 40.0% |
| ! | TGATGATGATCCATGTGAGA+AGG | - | chr3.4:60272277-60272296 | None:intergenic | 40.0% |
| !! | AAATTGGAGAGGAAGCATCA+AGG | + | chr3.4:60275006-60275025 | MS.gene008657:CDS | 40.0% |
| !! | TCTTGGAAGAGCATTGATCT+CGG | + | chr3.4:60272318-60272337 | MS.gene008657:CDS | 40.0% |
| AAACAAGAGGCGAGTAGTAG+TGG | + | chr3.4:60272342-60272361 | MS.gene008657:CDS | 45.0% | |
| AATTCAGACCGAAAAGCAGG+GGG | - | chr3.4:60274543-60274562 | None:intergenic | 45.0% | |
| AGATCACAGGCTTTCACGAT+TGG | - | chr3.4:60273207-60273226 | None:intergenic | 45.0% | |
| ATCACAGGCTTTCACGATTG+GGG | - | chr3.4:60273205-60273224 | None:intergenic | 45.0% | |
| CATCATCAGCATTTCGACCA+TGG | + | chr3.4:60272289-60272308 | MS.gene008657:CDS | 45.0% | |
| GAGATCAATGCTCTTCCAAG+AGG | - | chr3.4:60272319-60272338 | None:intergenic | 45.0% | |
| GATCACAGGCTTTCACGATT+GGG | - | chr3.4:60273206-60273225 | None:intergenic | 45.0% | |
| GATGAGAAGAACCACATCAG+TGG | + | chr3.4:60272432-60272451 | MS.gene008657:CDS | 45.0% | |
| GCGGAAGGAGAAATATTTGC+AGG | + | chr3.4:60273084-60273103 | MS.gene008657:CDS | 45.0% | |
| GCTTCCTCTCCAATTTGAAC+TGG | - | chr3.4:60275002-60275021 | None:intergenic | 45.0% | |
| GGACTTCTGCACATAAATCG+AGG | + | chr3.4:60273029-60273048 | MS.gene008657:CDS | 45.0% | |
| GGAGTCAAAGTAACTCCACA+AGG | + | chr3.4:60272363-60272382 | MS.gene008657:CDS | 45.0% | |
| GGGAGAGAAAATCACTAAGG+AGG | - | chr3.4:60274757-60274776 | None:intergenic | 45.0% | |
| TGGATCCAAAGAGGCTCAAA+CGG | + | chr3.4:60272505-60272524 | MS.gene008657:CDS | 45.0% | |
| TGGGAATATGGATCCCTTGT+TGG | - | chr3.4:60273559-60273578 | None:intergenic | 45.0% | |
| ! | GCCACACATTTAAGATCTGG+AGG | - | chr3.4:60274603-60274622 | None:intergenic | 45.0% |
| ! | GGGTAGATATGGTGGGAATA+TGG | - | chr3.4:60273571-60273590 | None:intergenic | 45.0% |
| ! | GTGTTTGATTTCTTAGGCCC+AGG | - | chr3.4:60272246-60272265 | None:intergenic | 45.0% |
| ! | TCAGCAGTGGTTGTTGACTA+TGG | + | chr3.4:60273687-60273706 | MS.gene008657:CDS | 45.0% |
| !! | TATTGCTGATTTGGAGCGGA+AGG | + | chr3.4:60273069-60273088 | MS.gene008657:CDS | 45.0% |
| ACGGTTAGACCCTTCTCACA+TGG | + | chr3.4:60272264-60272283 | MS.gene008657:CDS | 50.0% | |
| AGACTTCAACTTGTGGGCGA+AGG | - | chr3.4:60273660-60273679 | None:intergenic | 50.0% | |
| AGCTGAGGTGAATAGGCTGA+GGG | + | chr3.4:60274071-60274090 | MS.gene008657:CDS | 50.0% | |
| ATGCACTACCACCACTGATG+TGG | - | chr3.4:60272446-60272465 | None:intergenic | 50.0% | |
| GAGAAGAACCACATCAGTGG+TGG | + | chr3.4:60272435-60272454 | MS.gene008657:CDS | 50.0% | |
| GCATACCGTTTGAGCCTCTT+TGG | - | chr3.4:60272513-60272532 | None:intergenic | 50.0% | |
| GGTAGTGCATCTGCATGTGT+TGG | + | chr3.4:60272456-60272475 | MS.gene008657:CDS | 50.0% | |
| ! | GCATCTGCATGTGTTGGTGT+TGG | + | chr3.4:60272462-60272481 | MS.gene008657:CDS | 50.0% |
| !! | ATGTTGAGGTTGGTGGCATG+TGG | + | chr3.4:60274504-60274523 | MS.gene008657:intron | 50.0% |
| !! | TGTTGAGGTTGGTGGCATGT+GGG | + | chr3.4:60274505-60274524 | MS.gene008657:intron | 50.0% |
| CTCTTCCAAGAGGGTTGCCA+TGG | - | chr3.4:60272309-60272328 | None:intergenic | 55.0% | |
| GAGCTGAGGTGAATAGGCTG+AGG | + | chr3.4:60274070-60274089 | MS.gene008657:CDS | 55.0% | |
| TGCACACAGAAGAGGGACCT+GGG | + | chr3.4:60272226-60272245 | MS.gene008657:CDS | 55.0% | |
| TTCGACCATGGCAACCCTCT+TGG | + | chr3.4:60272301-60272320 | MS.gene008657:CDS | 55.0% | |
| TTGCACACAGAAGAGGGACC+TGG | + | chr3.4:60272225-60272244 | MS.gene008657:CDS | 55.0% | |
| ! | GTGCAGAAGTCCGGTTTGCT+AGG | - | chr3.4:60273021-60273040 | None:intergenic | 55.0% |
| !! | AGGTTGGTGGCATGTGGGAA+GGG | + | chr3.4:60274510-60274529 | MS.gene008657:intron | 55.0% |
| !! | GGTTTGGACCCCCTGCTTTT+CGG | + | chr3.4:60274532-60274551 | MS.gene008657:intron | 55.0% |
| GTGGCATGTGGGAAGGGGTT+TGG | + | chr3.4:60274516-60274535 | MS.gene008657:intron | 60.0% | |
| !! | GAGGTTGGTGGCATGTGGGA+AGG | + | chr3.4:60274509-60274528 | MS.gene008657:intron | 60.0% |
| !! | GGTTGGTGGCATGTGGGAAG+GGG | + | chr3.4:60274511-60274530 | MS.gene008657:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 60272186 | 60275042 | 60272186 | ID=MS.gene008657 |
| chr3.4 | mRNA | 60272186 | 60275042 | 60272186 | ID=MS.gene008657.t1;Parent=MS.gene008657 |
| chr3.4 | exon | 60272186 | 60272526 | 60272186 | ID=MS.gene008657.t1.exon1;Parent=MS.gene008657.t1 |
| chr3.4 | CDS | 60272186 | 60272526 | 60272186 | ID=cds.MS.gene008657.t1;Parent=MS.gene008657.t1 |
| chr3.4 | exon | 60273015 | 60273105 | 60273015 | ID=MS.gene008657.t1.exon2;Parent=MS.gene008657.t1 |
| chr3.4 | CDS | 60273015 | 60273105 | 60273015 | ID=cds.MS.gene008657.t1;Parent=MS.gene008657.t1 |
| chr3.4 | exon | 60273643 | 60273769 | 60273643 | ID=MS.gene008657.t1.exon3;Parent=MS.gene008657.t1 |
| chr3.4 | CDS | 60273643 | 60273769 | 60273643 | ID=cds.MS.gene008657.t1;Parent=MS.gene008657.t1 |
| chr3.4 | exon | 60274052 | 60274133 | 60274052 | ID=MS.gene008657.t1.exon4;Parent=MS.gene008657.t1 |
| chr3.4 | CDS | 60274052 | 60274133 | 60274052 | ID=cds.MS.gene008657.t1;Parent=MS.gene008657.t1 |
| chr3.4 | exon | 60275003 | 60275042 | 60275003 | ID=MS.gene008657.t1.exon5;Parent=MS.gene008657.t1 |
| chr3.4 | CDS | 60275003 | 60275042 | 60275003 | ID=cds.MS.gene008657.t1;Parent=MS.gene008657.t1 |
| Gene Sequence |
| Protein sequence |
