AlfalfaGEDB | MS.gene008661

M. sativa cultivar XinJiangDaYe / MS.gene008661

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF07716.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene008661.t1	XP_024634655.1	75.9	212	31	2	8	219	1	192	6.50E-73	283.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene008661.t1	Q6K3R9	36.0	100	59	1	108	207	140	234	5.3e-07	56.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene008661.t1	A0A2K3MUT1	53.0	198	85	4	14	210	1	191	2.9e-38	168.3

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene008661.t1	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene008661.t1	MTR_3g465280	58.333	84	32	2	13	96	1	81	9.73e-26	101
MS.gene008661.t1	MTR_3g465280	47.917	96	47	3	1	95	83	176	1.48e-18	82.4
MS.gene008661.t1	MTR_4g079500	40.594	101	53	3	108	207	194	288	7.87e-14	69.7
MS.gene008661.t1	MTR_2g090900	38.614	101	55	3	108	207	191	285	2.04e-12	65.9
MS.gene008661.t1	MTR_2g090900	38.614	101	55	3	108	207	191	285	2.63e-12	65.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene008661.t1	AT2G42380	37.288	118	67	3	91	207	169	280	1.01e-14	72.0
MS.gene008661.t1	AT3G58120	36.975	119	67	4	90	207	185	296	7.17e-14	69.7
MS.gene008661.t1	AT2G42380	38.235	102	56	3	91	191	169	264	2.24e-12	65.1
MS.gene008661.t1	AT3G58120	37.864	103	56	4	90	191	185	280	1.74e-11	62.8

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Find 43 sgRNAs with CRISPR-Local

Find 91 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGAGGCAAGTAGCAG+TGG	0.526381	3.4:+60202453	MS.gene008661:CDS
AAAGAAAGGATACTTCAAGA+AGG	0.624481	3.4:+60203854	MS.gene008661:CDS
AAGCCTATGAAAATCACCAG+CGG	0.745418	3.4:+60203780	MS.gene008661:CDS
AAGGCCGATGCTCATCCAAG+AGG	0.678512	3.4:-60202427	None:intergenic
ACATGACCAAGATCTGATTT+TGG	0.271978	3.4:-60202522	None:intergenic
ACTTGATTATATTGCAGATT+TGG	0.251262	3.4:+60203166	MS.gene008661:CDS
AGCGTCTAAGAAATCAAACA+TGG	0.676949	3.4:+60202356	MS.gene008661:CDS
AGCTGAGGTGAATAGGCTGA+GGG	0.614102	3.4:+60203978	MS.gene008661:CDS
AGGCCGATGCTCATCCAAGA+GGG	0.614873	3.4:-60202426	None:intergenic
AGGCTTCAACTTGTGGGCGA+AGG	0.567374	3.4:-60203763	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAAGGATACTTCAAGA+AGG	+	chr3.4:60203854-60203873	MS.gene008661:CDS	30.0%
ACAGATGGAAAAATATTTGC+AGG	+	chr3.4:60203190-60203209	MS.gene008661:CDS	30.0%
AGTATACCAAAATCAGATCT+TGG	+	chr3.4:60202516-60202535	MS.gene008661:CDS	30.0%
ATAGATCGATTATGATCGAA+TGG	-	chr3.4:60203537-60203556	None:intergenic	30.0%
ATTGATGAACCTAAACAACA+AGG	+	chr3.4:60203651-60203670	MS.gene008661:intron	30.0%
CAGTTGGCAAGTTAAAAATA+TGG	+	chr3.4:60202679-60202698	MS.gene008661:intron	30.0%
TATCTCAAAATCATCTTCAC+AGG	-	chr3.4:60203715-60203734	None:intergenic	30.0%
TGATCAAGCAACACAAAAAT+TGG	+	chr3.4:60202596-60202615	MS.gene008661:CDS	30.0%
TTGATGAACCTAAACAACAA+GGG	+	chr3.4:60203652-60203671	MS.gene008661:intron	30.0%
TTGCTGTAAGAGAAAAAGAA+AGG	+	chr3.4:60203840-60203859	MS.gene008661:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	60202297	60204151	60202297	ID=MS.gene008661
chr3.4	mRNA	60202297	60204151	60202297	ID=MS.gene008661.t1;Parent=MS.gene008661
chr3.4	exon	60202297	60202660	60202297	ID=MS.gene008661.t1.exon1;Parent=MS.gene008661.t1
chr3.4	CDS	60202297	60202660	60202297	ID=cds.MS.gene008661.t1;Parent=MS.gene008661.t1
chr3.4	exon	60203129	60203211	60203129	ID=MS.gene008661.t1.exon2;Parent=MS.gene008661.t1
chr3.4	CDS	60203129	60203211	60203129	ID=cds.MS.gene008661.t1;Parent=MS.gene008661.t1
chr3.4	exon	60203749	60203875	60203749	ID=MS.gene008661.t1.exon3;Parent=MS.gene008661.t1
chr3.4	CDS	60203749	60203875	60203749	ID=cds.MS.gene008661.t1;Parent=MS.gene008661.t1
chr3.4	exon	60203959	60204040	60203959	ID=MS.gene008661.t1.exon4;Parent=MS.gene008661.t1
chr3.4	CDS	60203959	60204040	60203959	ID=cds.MS.gene008661.t1;Parent=MS.gene008661.t1
chr3.4	exon	60204139	60204151	60204139	ID=MS.gene008661.t1.exon5;Parent=MS.gene008661.t1
chr3.4	CDS	60204139	60204151	60204139	ID=cds.MS.gene008661.t1;Parent=MS.gene008661.t1

Gene Sequence

>MS.gene008661

ATGCAGGGCATCCCAAAGAGAATGACTGGTACATACATGTTGCAAACAGAAGAGGGACCAGCGTCTAAGAAATCAAACATGGTTAGACCCTTCTCACATGGATCTTCATCAGCATTTCGACCATGGCAACCCTCTTGGATGAGCATCGGCCTTGGTAAACAAGAGGCAAGTAGCAGTGGAGTAAAAGAAACTCCACAAGACCACAAAACTAATAACATTAGTATACCAAAATCAGATCTTGGTCATGTTGAGAAGAAACACATCAGTGGTGGTAGTGCATCTGCAGATGTTGGTGTTGGTGATCAAGCAACACAAAAATTGGATCCAAAGAGGCTCAAACGGTATACTTGTCTTACTTATGCTTGTAAGCAATAAAAAAAATCAGTTGGCAAGTTAAAAATATGGAGGATAGAAATTTTGATTCTTAAGGCTAAACGTGTGATGGGAATAATATATTTTTTTTATTACATTTTTTTTACCTGAAAAAAAATCCGATAAATGCGAGTTGGTTCTATTTAGGTTTTTTTTTTTTTTTTGACAAAAGTTCTATTTAGGCTTTATCATGGTCAACTGTGATTTTAATAATAAACTTAATTAATATTGTAATTGTTTTCATCTTATTTTTAATTAAAAATTAAAATAAATCTATCTGTTGGTTTAAGTTTCATGTTATTAGATTTATCATCTATGAATGTGATACCCTATCTAATATAGTTGATTTGATTGATTTTATTCTAATCAAATCTAAATCAGTTGTTTATTTCCTACACAAAATCAATATAATATATTTTAGATTTTCATCTTTTATCTTATCTTGTTCTTAGGATTGAAGCAAATCGAGCTGCTGCACAAAAATCGAGATTGAAAAAACTTGATTATATTGCAGATTTGGAACAGATGGAAAAATATTTGCAGGTTCACATCATTATTTATCATATCACGAAGATTGTAATTTATGCATTTTGTCCTATTAATATATGTTCACGTGTTTCGAAGAGACTTAAATTATCCCCAATCGCGAAAGCGAATGGTGTTTAGATGAGAATCAAACAACACAAATTCTAATTTCACCAAATTGAAATTGAAATTGAAATACACTTTATGTAATTTGTGTTGTTTGATCTTCATCAATTGCTCTAGATGTAGAACGGCTGGTTACGACTTCAAAAATTTCAATTTCTCGATTATTTGTATTAATTTGATGTAGATAAATACACTACGATCTTGTTGATTTGAACCATTCGATCATAATCGATCTATTCATGTATCAACTTATAATTTGGAATTCAATTGAAAAATTGACATGTGAGTCATTTGATCTAGATCTGATTGTTCAAATAGCATAACTCAACAAATTGATGAACCTAAACAACAAGGGATCCATATTCCCACCATATCTATCCAAAAAAAAAATACCTGTGAAGATGATTTTGAGATATTTTTTACATGCAGGCTGAGTTATCTTTCCTTCGCCCACAAGTTGAAGCCTATGAAAATCACCAGCGGTTGTTGAGTCTTGAACACCACCAATTAAGACTTGAAATTGCTGTAAGAGAAAAAGAAAGGATACTTCAAGAAGGTGATATTACTCATTTGTCTTTATATCTAGCATTTATTATCGTGTCTCTGCCATTTGTTTCACACGAGTATGTTTATTTTCAGTTGAGATTGAGAATAAGAGAGCTGAGGTGAATAGGCTGAGGGAGCTTCAGGAGAAACTAGTTTCTGAAGCACAAAACAAGAGGTATGTTGAAATGCTTACTAGTATTTTTAACAATATTTTTGTACTAATTATAATATGACTCATATGCCTAAATTGTTGTTTAAAAATTCATAATTAAGGTTTGTGTATTAA

Protein sequence

>MS.gene008661.t1

MQGIPKRMTGTYMLQTEEGPASKKSNMVRPFSHGSSSAFRPWQPSWMSIGLGKQEASSSGVKETPQDHKTNNISIPKSDLGHVEKKHISGGSASADVGVGDQATQKLDPKRLKRYTCLTYASNRAAAQKSRLKKLDYIADLEQMEKYLQAELSFLRPQVEAYENHQRLLSLEHHQLRLEIAVREKERILQEVEIENKRAEVNRLRELQEKLVSEAQNKRFVY