Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008665.t1 | KEH34360.1 | 80.8 | 552 | 101 | 2 | 1 | 551 | 1 | 548 | 1.00E-175 | 626.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008665.t1 | Q9LVU8 | 35.9 | 78 | 48 | 1 | 423 | 500 | 129 | 204 | 8.5e-06 | 53.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008665.t1 | A0A072V894 | 80.8 | 552 | 101 | 2 | 1 | 551 | 1 | 548 | 7.3e-176 | 626.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene008665.t1 | TF | RWP-RK |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008665.t1 | MTR_3g465110 | 87.020 | 547 | 64 | 4 | 1 | 545 | 1 | 542 | 0.0 | 917 |
| MS.gene008665.t1 | MTR_3g104830 | 51.434 | 558 | 189 | 13 | 7 | 544 | 2 | 497 | 2.70e-168 | 486 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008665.t1 | AT5G16100 | 25.418 | 299 | 177 | 7 | 266 | 529 | 153 | 440 | 3.62e-24 | 105 |
Find 108 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCAAGTCCATGGTAATTT+TGG | 0.212819 | 3.4:-60168191 | None:intergenic |
| GGGTCCATTATTGCTATTAA+TGG | 0.250205 | 3.4:-60168166 | None:intergenic |
| ATTGCTATTAATGGACAAAT+TGG | 0.250376 | 3.4:-60168157 | None:intergenic |
| CAAAATAATAATGTTTCATT+TGG | 0.253731 | 3.4:+60168729 | MS.gene008665:CDS |
| CATGGACATGGTAGTAATAT+TGG | 0.259830 | 3.4:+60168375 | MS.gene008665:CDS |
| TTGTCCATTAATAGCAATAA+TGG | 0.260366 | 3.4:+60168162 | MS.gene008665:CDS |
| TGAATTGCGGTTGCTCAAAT+TGG | 0.288664 | 3.4:-60168133 | None:intergenic |
| AGACGAATCATTTACTCTAA+TGG | 0.306498 | 3.4:+60168879 | MS.gene008665:CDS |
| ATTGTTGGGCCTCCATTAAC+AGG | 0.321028 | 3.4:-60169062 | None:intergenic |
| TATGAAAATCTTGAGATTCA+TGG | 0.321881 | 3.4:+60168999 | MS.gene008665:CDS |
| GCATTGCATTGGAATTAAAT+TGG | 0.324221 | 3.4:-60168404 | None:intergenic |
| CAGGAGCAAGTTGGTGAGAT+TGG | 0.325114 | 3.4:+60169929 | MS.gene008665:CDS |
| CGCCATGTGACACCTGTTAA+TGG | 0.325291 | 3.4:+60169050 | MS.gene008665:CDS |
| TTGGATTGATGATATTAATA+TGG | 0.329852 | 3.4:+60169337 | MS.gene008665:CDS |
| CACACTACTGCTGCTGATAA+TGG | 0.341115 | 3.4:-60170565 | None:intergenic |
| CTCTTTGCACCGGATATGAT+TGG | 0.357597 | 3.4:+60169318 | MS.gene008665:CDS |
| CTTGAGATTCATGGAAGCTT+GGG | 0.357672 | 3.4:+60169008 | MS.gene008665:CDS |
| AACGATGCACCTTCAATACT+TGG | 0.361729 | 3.4:-60167985 | None:intergenic |
| GATATTAAATTGTAATTGAA+TGG | 0.400636 | 3.4:-60168549 | None:intergenic |
| TGATGAAATAAAGAACTTCC+TGG | 0.412875 | 3.4:+60169223 | MS.gene008665:CDS |
| AGCAATACTTGAAAATCAAT+TGG | 0.419584 | 3.4:+60170412 | MS.gene008665:CDS |
| TGGAATAAGTAACTTTGAAG+TGG | 0.427695 | 3.4:+60168749 | MS.gene008665:CDS |
| CGATTACTTTCATCTACCTA+TGG | 0.438638 | 3.4:+60170188 | MS.gene008665:CDS |
| TGTATATATCATTTAGTGTA+GGG | 0.456932 | 3.4:-60168059 | None:intergenic |
| CTTCCTGGATCAGTATTGTA+TGG | 0.458075 | 3.4:+60169238 | MS.gene008665:CDS |
| CAATCGTTCGATCAATTGTT+GGG | 0.465946 | 3.4:-60169076 | None:intergenic |
| TCTTGAGATTCATGGAAGCT+TGG | 0.468339 | 3.4:+60169007 | MS.gene008665:CDS |
| CACCAAAATTACCATGGACT+TGG | 0.468970 | 3.4:+60168189 | MS.gene008665:CDS |
| AGATGTGCACAATTTACATT+GGG | 0.476510 | 3.4:+60170156 | MS.gene008665:CDS |
| TCAATCGTTCGATCAATTGT+TGG | 0.476535 | 3.4:-60169077 | None:intergenic |
| CAACAAAATTACCATGGACT+TGG | 0.485819 | 3.4:+60168273 | MS.gene008665:CDS |
| GGAAGTTCTTTATTTCATCA+AGG | 0.486733 | 3.4:-60169220 | None:intergenic |
| GGAATAAGTAACTTTGAAGT+GGG | 0.489373 | 3.4:+60168750 | MS.gene008665:CDS |
| TCAATTGGACAGGCAAGATC+CGG | 0.489751 | 3.4:+60170427 | MS.gene008665:CDS |
| ATCATCAATCCAATCATATC+CGG | 0.493113 | 3.4:-60169327 | None:intergenic |
| ATTCTGTTGTGGCATTGCAT+TGG | 0.493127 | 3.4:-60168415 | None:intergenic |
| TGTATGGAACATAATTCAGC+AGG | 0.494565 | 3.4:+60169254 | MS.gene008665:CDS |
| TTGATCAAGTGCCAACGCTT+CGG | 0.497530 | 3.4:-60168808 | None:intergenic |
| CCAATGGTTCAAAATCAACT+TGG | 0.499953 | 3.4:+60168702 | MS.gene008665:CDS |
| CCATGTCCATGTTGGATACC+AGG | 0.499993 | 3.4:-60168654 | None:intergenic |
| GTAGAACAAAATTAAGAAGA+TGG | 0.504860 | 3.4:+60170265 | MS.gene008665:CDS |
| CTAGCCGCTGCTTCTTCCAT+AGG | 0.508372 | 3.4:-60170204 | None:intergenic |
| CAACAAAGTAGTAATTTCAA+TGG | 0.513743 | 3.4:+60168228 | MS.gene008665:CDS |
| AGAGTCCTTTCCCTTGTCGC+CGG | 0.514274 | 3.4:-60170446 | None:intergenic |
| ATGTATATATCATTTAGTGT+AGG | 0.514577 | 3.4:-60168060 | None:intergenic |
| AAGATGTGCACAATTTACAT+TGG | 0.515263 | 3.4:+60170155 | MS.gene008665:CDS |
| AAGCGTTGGCACTTGATCAA+TGG | 0.517228 | 3.4:+60168811 | MS.gene008665:CDS |
| TCATGGCATTCAACATGGAC+GGG | 0.518404 | 3.4:+60168512 | MS.gene008665:CDS |
| AAGAAGATGGCCACACAGAA+AGG | 0.518680 | 3.4:+60170278 | MS.gene008665:CDS |
| GATTGATGATATTAATATGG+AGG | 0.518874 | 3.4:+60169340 | MS.gene008665:CDS |
| TACTTGAAAATCAATTGGAC+AGG | 0.519249 | 3.4:+60170417 | MS.gene008665:CDS |
| GTTCCATACAATACTGATCC+AGG | 0.531567 | 3.4:-60169241 | None:intergenic |
| ATCATGGCATTCAACATGGA+CGG | 0.537136 | 3.4:+60168511 | MS.gene008665:CDS |
| GATACTAAATTGTAATCGAA+TGG | 0.539633 | 3.4:-60168477 | None:intergenic |
| CCATGGTATTCAACAAGGGC+AGG | 0.540350 | 3.4:+60168584 | MS.gene008665:CDS |
| ATGTCACAACAAAATGATCC+TGG | 0.543235 | 3.4:+60168636 | MS.gene008665:CDS |
| GCGACATAATTCAACGCAGT+TGG | 0.549096 | 3.4:-60170524 | None:intergenic |
| AAGATCCGGCGACAAGGGAA+AGG | 0.552910 | 3.4:+60170441 | MS.gene008665:CDS |
| CTCCATTAACAGGTGTCACA+TGG | 0.555997 | 3.4:-60169052 | None:intergenic |
| GACTTGGAATACTTCAACGA+GGG | 0.562322 | 3.4:+60168205 | MS.gene008665:CDS |
| CAGGCAAGATCCGGCGACAA+GGG | 0.569973 | 3.4:+60170436 | MS.gene008665:CDS |
| GTATCACCAGAAAATGATCA+TGG | 0.570985 | 3.4:+60168495 | MS.gene008665:CDS |
| TACATGAATAACAATAACAA+TGG | 0.572167 | 3.4:+60168078 | MS.gene008665:CDS |
| CCTGGTATCCAACATGGACA+TGG | 0.574573 | 3.4:+60168654 | MS.gene008665:CDS |
| CACCAGAGTGTGGTTCAACA+TGG | 0.578034 | 3.4:+60168357 | MS.gene008665:CDS |
| GCAAGAGCAAGAGCAAGAGC+AGG | 0.581397 | 3.4:+60169910 | MS.gene008665:CDS |
| AATGATCATGGCATTCAACA+TGG | 0.582948 | 3.4:+60168507 | MS.gene008665:CDS |
| ATTGATGATATTAATATGGA+GGG | 0.585774 | 3.4:+60169341 | MS.gene008665:CDS |
| GAGCAAGAGCAGGAGCAAGT+TGG | 0.586207 | 3.4:+60169920 | MS.gene008665:CDS |
| GGTATTCAACAAGGGCAGGA+TGG | 0.589069 | 3.4:+60168588 | MS.gene008665:CDS |
| TCCGTCCGTGTTGAACGCCA+TGG | 0.589945 | 3.4:-60168440 | None:intergenic |
| TTGAGATTCATGGAAGCTTG+GGG | 0.597747 | 3.4:+60169009 | MS.gene008665:CDS |
| GTAGAAGTATTCCAAGTCCA+TGG | 0.598550 | 3.4:-60168284 | None:intergenic |
| GTTGAAGTATTCCAAGTCCA+TGG | 0.599108 | 3.4:-60168200 | None:intergenic |
| ACAGGCAAGATCCGGCGACA+AGG | 0.599603 | 3.4:+60170435 | MS.gene008665:CDS |
| TCAACATCAGACCGAAGCGT+TGG | 0.600663 | 3.4:+60168797 | MS.gene008665:CDS |
| ACGCCATGGTCATTCTGTTG+TGG | 0.602328 | 3.4:-60168426 | None:intergenic |
| TATTATGAGACTCTTTGCAC+CGG | 0.606478 | 3.4:+60169308 | MS.gene008665:CDS |
| GGCATTCAACATGGACGGGG+TGG | 0.611696 | 3.4:+60168516 | MS.gene008665:CDS |
| TTGTACTACCATGTCCATGT+TGG | 0.614441 | 3.4:-60168662 | None:intergenic |
| ACCATGGCGTTCAACACGGA+CGG | 0.619182 | 3.4:+60168439 | MS.gene008665:CDS |
| GGACTTGGAATACTTCTACA+AGG | 0.619567 | 3.4:+60168288 | MS.gene008665:CDS |
| CATGGCATTCAACATGGACG+GGG | 0.620380 | 3.4:+60168513 | MS.gene008665:CDS |
| TGGACAAATTGGTTGAATTG+CGG | 0.623803 | 3.4:-60168146 | None:intergenic |
| CAACAACAAAATTCTTGCAG+TGG | 0.625689 | 3.4:+60168843 | MS.gene008665:CDS |
| CAAGACATGATTGATGATTG+TGG | 0.634370 | 3.4:+60170491 | MS.gene008665:CDS |
| AATGACCATGGTATTCAACA+AGG | 0.634847 | 3.4:+60168579 | MS.gene008665:CDS |
| CCTGCCCTTGTTGAATACCA+TGG | 0.635763 | 3.4:-60168584 | None:intergenic |
| CATGTGACACCTGTTAATGG+AGG | 0.638273 | 3.4:+60169053 | MS.gene008665:CDS |
| TCTACCTATGGAAGAAGCAG+CGG | 0.639381 | 3.4:+60170200 | MS.gene008665:CDS |
| GTCCATGTTGAACCACACTC+TGG | 0.639765 | 3.4:-60168359 | None:intergenic |
| TGCTGCTGATAATGGTGCGG+CGG | 0.640455 | 3.4:-60170557 | None:intergenic |
| AATGATCCTGGTATCCAACA+TGG | 0.643211 | 3.4:+60168648 | MS.gene008665:CDS |
| GGACCCCACCAAAATTACCA+TGG | 0.646800 | 3.4:+60168183 | MS.gene008665:CDS |
| CTGTCCCAACAAAATTACCA+TGG | 0.655622 | 3.4:+60168267 | MS.gene008665:CDS |
| AATGACCATGGCGTTCAACA+CGG | 0.655792 | 3.4:+60168435 | MS.gene008665:CDS |
| GGAATACTTCTACAAGGACA+TGG | 0.662894 | 3.4:+60168294 | MS.gene008665:CDS |
| TACTGCTGCTGATAATGGTG+CGG | 0.670583 | 3.4:-60170560 | None:intergenic |
| GTATGGAACATAATTCAGCA+GGG | 0.676056 | 3.4:+60169255 | MS.gene008665:CDS |
| ATGCCACAACAGAATGACCA+TGG | 0.686286 | 3.4:+60168423 | MS.gene008665:CDS |
| GACAAGGGAAAGGACTCTAG+AGG | 0.686791 | 3.4:+60170451 | MS.gene008665:CDS |
| AGTGTGGTTCAACATGGACA+TGG | 0.687520 | 3.4:+60168363 | MS.gene008665:CDS |
| CCAACAAAATCACCAGAGTG+TGG | 0.694382 | 3.4:+60168347 | MS.gene008665:CDS |
| ATAAAACTACCTGCTCTGAG+AGG | 0.699829 | 3.4:-60169970 | None:intergenic |
| ATGACCATGGTATTCAACAA+GGG | 0.702657 | 3.4:+60168580 | MS.gene008665:CDS |
| ATATCACCAGAAAATGACCA+TGG | 0.703982 | 3.4:+60168567 | MS.gene008665:CDS |
| GACATGATTGATGATTGTGG+CGG | 0.760229 | 3.4:+60170494 | MS.gene008665:CDS |
| GGACTTGGAATACTTCAACG+AGG | 0.774898 | 3.4:+60168204 | MS.gene008665:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATATATATCAAAATAAC+TGG | - | chr3.4:60168952-60168971 | None:intergenic | 15.0% |
| !! | CAAAATAATAATGTTTCATT+TGG | + | chr3.4:60168729-60168748 | MS.gene008665:CDS | 15.0% |
| !! | GATATTAAATTGTAATTGAA+TGG | - | chr3.4:60168552-60168571 | None:intergenic | 15.0% |
| !!! | CTTTTAGAAATATATTTGTT+TGG | + | chr3.4:60169517-60169536 | MS.gene008665:intron | 15.0% |
| !!! | GTTTATTTTGATTCTTATAT+AGG | + | chr3.4:60168969-60168988 | MS.gene008665:intron | 15.0% |
| !!! | TATCATAATGATTTTGATTT+GGG | + | chr3.4:60169756-60169775 | MS.gene008665:intron | 15.0% |
| !!! | TTTTTGTGTGTATTATTTTT+GGG | + | chr3.4:60170311-60170330 | MS.gene008665:intron | 15.0% |
| !!! | TTTTTTGTGTGTATTATTTT+TGG | + | chr3.4:60170310-60170329 | MS.gene008665:intron | 15.0% |
| !! | ATATTGTATGTATTGAATAG+AGG | + | chr3.4:60170130-60170149 | MS.gene008665:intron | 20.0% |
| !! | ATGTATATATCATTTAGTGT+AGG | - | chr3.4:60168063-60168082 | None:intergenic | 20.0% |
| !! | CACATATTAAATTAGCAAAA+TGG | - | chr3.4:60170351-60170370 | None:intergenic | 20.0% |
| !! | TACATGAATAACAATAACAA+TGG | + | chr3.4:60168078-60168097 | MS.gene008665:CDS | 20.0% |
| !! | TACTCATGTTGAAAAAATTT+GGG | - | chr3.4:60168038-60168057 | None:intergenic | 20.0% |
| !! | TGTATATATCATTTAGTGTA+GGG | - | chr3.4:60168062-60168081 | None:intergenic | 20.0% |
| !! | TGTGTCTTAAAATTAAGTAT+AGG | + | chr3.4:60170367-60170386 | MS.gene008665:intron | 20.0% |
| !! | TTACTCATGTTGAAAAAATT+TGG | - | chr3.4:60168039-60168058 | None:intergenic | 20.0% |
| !!! | ATCATAATGATTTTGATTTG+GGG | + | chr3.4:60169757-60169776 | MS.gene008665:intron | 20.0% |
| !!! | ATGAAATTCATTTAAGTTTG+TGG | - | chr3.4:60169543-60169562 | None:intergenic | 20.0% |
| !!! | ATTGATGATATTAATATGGA+GGG | + | chr3.4:60169341-60169360 | MS.gene008665:CDS | 20.0% |
| !!! | GTATCATAATGATTTTGATT+TGG | + | chr3.4:60169755-60169774 | MS.gene008665:intron | 20.0% |
| !!! | TTGGATTGATGATATTAATA+TGG | + | chr3.4:60169337-60169356 | MS.gene008665:CDS | 20.0% |
| !!! | TTTCTTGTAGTGATTAATTT+TGG | - | chr3.4:60168928-60168947 | None:intergenic | 20.0% |
| ! | AAACCTGAAAAATTATCGAT+AGG | - | chr3.4:60169368-60169387 | None:intergenic | 25.0% |
| ! | AGCAATACTTGAAAATCAAT+TGG | + | chr3.4:60170412-60170431 | MS.gene008665:CDS | 25.0% |
| ! | CAACAAAGTAGTAATTTCAA+TGG | + | chr3.4:60168228-60168247 | MS.gene008665:CDS | 25.0% |
| ! | GATACTAAATTGTAATCGAA+TGG | - | chr3.4:60168480-60168499 | None:intergenic | 25.0% |
| ! | GTAGAACAAAATTAAGAAGA+TGG | + | chr3.4:60170265-60170284 | MS.gene008665:CDS | 25.0% |
| ! | TATGAAAATCTTGAGATTCA+TGG | + | chr3.4:60168999-60169018 | MS.gene008665:CDS | 25.0% |
| ! | TGTAATATTACACTAAGACT+TGG | - | chr3.4:60169110-60169129 | None:intergenic | 25.0% |
| ! | TTATTAATGTTATTACGTCG+AGG | + | chr3.4:60169846-60169865 | MS.gene008665:intron | 25.0% |
| ! | TTGTCCATTAATAGCAATAA+TGG | + | chr3.4:60168162-60168181 | MS.gene008665:CDS | 25.0% |
| !! | AATTGGAATGATGATTTTGT+TGG | - | chr3.4:60168119-60168138 | None:intergenic | 25.0% |
| !! | ATTGCTATTAATGGACAAAT+TGG | - | chr3.4:60168160-60168179 | None:intergenic | 25.0% |
| !! | ATTGGAATGATGATTTTGTT+GGG | - | chr3.4:60168118-60168137 | None:intergenic | 25.0% |
| !! | GATTGATGATATTAATATGG+AGG | + | chr3.4:60169340-60169359 | MS.gene008665:CDS | 25.0% |
| !! | TGAAATATTTTCTCTTCCAA+TGG | + | chr3.4:60168686-60168705 | MS.gene008665:CDS | 25.0% |
| !!! | AAAAACAATCCAAGTATTGA+AGG | + | chr3.4:60167976-60167995 | MS.gene008665:CDS | 25.0% |
| !!! | ATAATTTTTCAGGTTTGTCT+TGG | + | chr3.4:60169372-60169391 | MS.gene008665:intron | 25.0% |
| !!! | CTTTTAGAAATGCATTTGTT+TGG | + | chr3.4:60169612-60169631 | MS.gene008665:intron | 25.0% |
| AAGATGTGCACAATTTACAT+TGG | + | chr3.4:60170155-60170174 | MS.gene008665:CDS | 30.0% | |
| AGACGAATCATTTACTCTAA+TGG | + | chr3.4:60168879-60168898 | MS.gene008665:CDS | 30.0% | |
| AGATGTGCACAATTTACATT+GGG | + | chr3.4:60170156-60170175 | MS.gene008665:CDS | 30.0% | |
| ATCATCAATCCAATCATATC+CGG | - | chr3.4:60169330-60169349 | None:intergenic | 30.0% | |
| GAATTTCATTTAGTCACACA+CGG | + | chr3.4:60169460-60169479 | MS.gene008665:intron | 30.0% | |
| GCATTGCATTGGAATTAAAT+TGG | - | chr3.4:60168407-60168426 | None:intergenic | 30.0% | |
| GTTGAAAAAATTTGGGTCAA+TGG | - | chr3.4:60168031-60168050 | None:intergenic | 30.0% | |
| TACTTGAAAATCAATTGGAC+AGG | + | chr3.4:60170417-60170436 | MS.gene008665:CDS | 30.0% | |
| TGATGAAATAAAGAACTTCC+TGG | + | chr3.4:60169223-60169242 | MS.gene008665:CDS | 30.0% | |
| ! | AAGTCCATGGTAATTTTGTT+GGG | - | chr3.4:60168274-60168293 | None:intergenic | 30.0% |
| ! | AATACTTTTACCTTTCTGTG+TGG | - | chr3.4:60170291-60170310 | None:intergenic | 30.0% |
| ! | ATTTTGTTGGGACAAATTTG+TGG | - | chr3.4:60168106-60168125 | None:intergenic | 30.0% |
| ! | GGAAGTTCTTTATTTCATCA+AGG | - | chr3.4:60169223-60169242 | None:intergenic | 30.0% |
| ! | TATAGGTGAAATGTCTTTTG+AGG | + | chr3.4:60170384-60170403 | MS.gene008665:intron | 30.0% |
| ! | TGGAATAAGTAACTTTGAAG+TGG | + | chr3.4:60168749-60168768 | MS.gene008665:CDS | 30.0% |
| ! | TTTTGTTGGGACAAATTTGT+GGG | - | chr3.4:60168105-60168124 | None:intergenic | 30.0% |
| !! | ATTTTGTTGTGACATTGCAT+GGG | - | chr3.4:60168631-60168650 | None:intergenic | 30.0% |
| !! | GGAATAAGTAACTTTGAAGT+GGG | + | chr3.4:60168750-60168769 | MS.gene008665:CDS | 30.0% |
| !! | TGTATCAGTTTTTCTGAGAA+AGG | + | chr3.4:60169197-60169216 | MS.gene008665:intron | 30.0% |
| AATGACCATGGTATTCAACA+AGG | + | chr3.4:60168579-60168598 | MS.gene008665:CDS | 35.0% | |
| AATGATCATGGCATTCAACA+TGG | + | chr3.4:60168507-60168526 | MS.gene008665:CDS | 35.0% | |
| AGATTGGAACACCTGAAAAA+AGG | + | chr3.4:60169945-60169964 | MS.gene008665:CDS | 35.0% | |
| ATATCACCAGAAAATGACCA+TGG | + | chr3.4:60168567-60168586 | MS.gene008665:CDS | 35.0% | |
| ATGACCATGGTATTCAACAA+GGG | + | chr3.4:60168580-60168599 | MS.gene008665:CDS | 35.0% | |
| ATGTCACAACAAAATGATCC+TGG | + | chr3.4:60168636-60168655 | MS.gene008665:CDS | 35.0% | |
| CAACAAAATTACCATGGACT+TGG | + | chr3.4:60168273-60168292 | MS.gene008665:CDS | 35.0% | |
| CAACAACAAAATTCTTGCAG+TGG | + | chr3.4:60168843-60168862 | MS.gene008665:CDS | 35.0% | |
| CAATCGTTCGATCAATTGTT+GGG | - | chr3.4:60169079-60169098 | None:intergenic | 35.0% | |
| CATGGACATGGTAGTAATAT+TGG | + | chr3.4:60168375-60168394 | MS.gene008665:CDS | 35.0% | |
| CCAATGGTTCAAAATCAACT+TGG | + | chr3.4:60168702-60168721 | MS.gene008665:CDS | 35.0% | |
| CGATTACTTTCATCTACCTA+TGG | + | chr3.4:60170188-60170207 | MS.gene008665:CDS | 35.0% | |
| GTATCACCAGAAAATGATCA+TGG | + | chr3.4:60168495-60168514 | MS.gene008665:CDS | 35.0% | |
| GTATGGAACATAATTCAGCA+GGG | + | chr3.4:60169255-60169274 | MS.gene008665:CDS | 35.0% | |
| TATTATGAGACTCTTTGCAC+CGG | + | chr3.4:60169308-60169327 | MS.gene008665:CDS | 35.0% | |
| TCAATCGTTCGATCAATTGT+TGG | - | chr3.4:60169080-60169099 | None:intergenic | 35.0% | |
| TGGACAAATTGGTTGAATTG+CGG | - | chr3.4:60168149-60168168 | None:intergenic | 35.0% | |
| TGTATGGAACATAATTCAGC+AGG | + | chr3.4:60169254-60169273 | MS.gene008665:CDS | 35.0% | |
| TTGAACAATATATACTCGCG+AGG | + | chr3.4:60170007-60170026 | MS.gene008665:intron | 35.0% | |
| ! | CAAGACATGATTGATGATTG+TGG | + | chr3.4:60170491-60170510 | MS.gene008665:CDS | 35.0% |
| ! | CAAGTCCATGGTAATTTTGT+TGG | - | chr3.4:60168275-60168294 | None:intergenic | 35.0% |
| ! | GGGTCCATTATTGCTATTAA+TGG | - | chr3.4:60168169-60168188 | None:intergenic | 35.0% |
| ! | GGTCCTATCGATAATTTTTC+AGG | + | chr3.4:60169362-60169381 | MS.gene008665:CDS | 35.0% |
| ! | TGAATGCCATGATCATTTTC+TGG | - | chr3.4:60168504-60168523 | None:intergenic | 35.0% |
| ! | TTCCAAGTCCATGGTAATTT+TGG | - | chr3.4:60168194-60168213 | None:intergenic | 35.0% |
| !! | AAGTCCATGGTAATTTTGGT+GGG | - | chr3.4:60168190-60168209 | None:intergenic | 35.0% |
| !! | CATTTTGTTGTGACATTGCA+TGG | - | chr3.4:60168632-60168651 | None:intergenic | 35.0% |
| !! | TGAATACCATGGTCATTTTC+TGG | - | chr3.4:60168576-60168595 | None:intergenic | 35.0% |
| !!! | CCAAGTTGATTTTGAACCAT+TGG | - | chr3.4:60168705-60168724 | None:intergenic | 35.0% |
| !!! | GAATTTTGTTGTTGTTCGAG+TGG | - | chr3.4:60168837-60168856 | None:intergenic | 35.0% |
| AACGATGCACCTTCAATACT+TGG | - | chr3.4:60167988-60168007 | None:intergenic | 40.0% | |
| AAGCGACAGATTTGTCTGTA+TGG | + | chr3.4:60170067-60170086 | MS.gene008665:intron | 40.0% | |
| AATGATCCTGGTATCCAACA+TGG | + | chr3.4:60168648-60168667 | MS.gene008665:CDS | 40.0% | |
| ATCATGGCATTCAACATGGA+CGG | + | chr3.4:60168511-60168530 | MS.gene008665:CDS | 40.0% | |
| ATTCTGTTGTGGCATTGCAT+TGG | - | chr3.4:60168418-60168437 | None:intergenic | 40.0% | |
| CACCAAAATTACCATGGACT+TGG | + | chr3.4:60168189-60168208 | MS.gene008665:CDS | 40.0% | |
| CTGTCCCAACAAAATTACCA+TGG | + | chr3.4:60168267-60168286 | MS.gene008665:CDS | 40.0% | |
| CTTCCTGGATCAGTATTGTA+TGG | + | chr3.4:60169238-60169257 | MS.gene008665:CDS | 40.0% | |
| CTTGAGATTCATGGAAGCTT+GGG | + | chr3.4:60169008-60169027 | MS.gene008665:CDS | 40.0% | |
| GACTTGGAATACTTCAACGA+GGG | + | chr3.4:60168205-60168224 | MS.gene008665:CDS | 40.0% | |
| GGAATACTTCTACAAGGACA+TGG | + | chr3.4:60168294-60168313 | MS.gene008665:CDS | 40.0% | |
| GGACTTGGAATACTTCTACA+AGG | + | chr3.4:60168288-60168307 | MS.gene008665:CDS | 40.0% | |
| GTTCCATACAATACTGATCC+AGG | - | chr3.4:60169244-60169263 | None:intergenic | 40.0% | |
| TCTTGAGATTCATGGAAGCT+TGG | + | chr3.4:60169007-60169026 | MS.gene008665:CDS | 40.0% | |
| TGAATTGCGGTTGCTCAAAT+TGG | - | chr3.4:60168136-60168155 | None:intergenic | 40.0% | |
| TTGAGATTCATGGAAGCTTG+GGG | + | chr3.4:60169009-60169028 | MS.gene008665:CDS | 40.0% | |
| TTGTACTACCATGTCCATGT+TGG | - | chr3.4:60168665-60168684 | None:intergenic | 40.0% | |
| ! | ATAAAACTACCTGCTCTGAG+AGG | - | chr3.4:60169973-60169992 | None:intergenic | 40.0% |
| ! | ATTTTGTTGGGACAGTGGAT+TGG | - | chr3.4:60168262-60168281 | None:intergenic | 40.0% |
| ! | CAAGTCCATGGTAATTTTGG+TGG | - | chr3.4:60168191-60168210 | None:intergenic | 40.0% |
| ! | CACACTCTGGTGATTTTGTT+GGG | - | chr3.4:60168349-60168368 | None:intergenic | 40.0% |
| ! | GACATGATTGATGATTGTGG+CGG | + | chr3.4:60170494-60170513 | MS.gene008665:CDS | 40.0% |
| ! | GTTGAAGTATTCCAAGTCCA+TGG | - | chr3.4:60168203-60168222 | None:intergenic | 40.0% |
| ! | TGGTAATTTTGTTGGGACAG+TGG | - | chr3.4:60168267-60168286 | None:intergenic | 40.0% |
| !! | AGTCCATGGTAATTTTGGTG+GGG | - | chr3.4:60168189-60168208 | None:intergenic | 40.0% |
| !! | GTAGAAGTATTCCAAGTCCA+TGG | - | chr3.4:60168287-60168306 | None:intergenic | 40.0% |
| !!! | TCTGAGAGGTTCCTTTTTTC+AGG | - | chr3.4:60169959-60169978 | None:intergenic | 40.0% |
| AAAAAGGAACCTCTCAGAGC+AGG | + | chr3.4:60169961-60169980 | MS.gene008665:CDS | 45.0% | |
| AAGAAGATGGCCACACAGAA+AGG | + | chr3.4:60170278-60170297 | MS.gene008665:CDS | 45.0% | |
| AATGACCATGGCGTTCAACA+CGG | + | chr3.4:60168435-60168454 | MS.gene008665:CDS | 45.0% | |
| AGTGTGGTTCAACATGGACA+TGG | + | chr3.4:60168363-60168382 | MS.gene008665:CDS | 45.0% | |
| ATGCCACAACAGAATGACCA+TGG | + | chr3.4:60168423-60168442 | MS.gene008665:CDS | 45.0% | |
| ATTGTTGGGCCTCCATTAAC+AGG | - | chr3.4:60169065-60169084 | None:intergenic | 45.0% | |
| CATGTGACACCTGTTAATGG+AGG | + | chr3.4:60169053-60169072 | MS.gene008665:CDS | 45.0% | |
| CCAACAAAATCACCAGAGTG+TGG | + | chr3.4:60168347-60168366 | MS.gene008665:CDS | 45.0% | |
| CTCTTTGCACCGGATATGAT+TGG | + | chr3.4:60169318-60169337 | MS.gene008665:CDS | 45.0% | |
| GCGACATAATTCAACGCAGT+TGG | - | chr3.4:60170527-60170546 | None:intergenic | 45.0% | |
| GGACTTGGAATACTTCAACG+AGG | + | chr3.4:60168204-60168223 | MS.gene008665:CDS | 45.0% | |
| GGGTTGTGACTGAGTATTTC+TGG | + | chr3.4:60169777-60169796 | MS.gene008665:intron | 45.0% | |
| TCAATTGGACAGGCAAGATC+CGG | + | chr3.4:60170427-60170446 | MS.gene008665:CDS | 45.0% | |
| TCATGGCATTCAACATGGAC+GGG | + | chr3.4:60168512-60168531 | MS.gene008665:CDS | 45.0% | |
| TCTACCTATGGAAGAAGCAG+CGG | + | chr3.4:60170200-60170219 | MS.gene008665:CDS | 45.0% | |
| TTGATCAAGTGCCAACGCTT+CGG | - | chr3.4:60168811-60168830 | None:intergenic | 45.0% | |
| ! | CCACACTCTGGTGATTTTGT+TGG | - | chr3.4:60168350-60168369 | None:intergenic | 45.0% |
| ! | CTCCATTAACAGGTGTCACA+TGG | - | chr3.4:60169055-60169074 | None:intergenic | 45.0% |
| !! | AAGCGTTGGCACTTGATCAA+TGG | + | chr3.4:60168811-60168830 | MS.gene008665:CDS | 45.0% |
| !! | TACTGCTGCTGATAATGGTG+CGG | - | chr3.4:60170563-60170582 | None:intergenic | 45.0% |
| ACGCCATGGTCATTCTGTTG+TGG | - | chr3.4:60168429-60168448 | None:intergenic | 50.0% | |
| CACCAGAGTGTGGTTCAACA+TGG | + | chr3.4:60168357-60168376 | MS.gene008665:CDS | 50.0% | |
| CATGGCATTCAACATGGACG+GGG | + | chr3.4:60168513-60168532 | MS.gene008665:CDS | 50.0% | |
| CCATGGTATTCAACAAGGGC+AGG | + | chr3.4:60168584-60168603 | MS.gene008665:CDS | 50.0% | |
| CCATGTCCATGTTGGATACC+AGG | - | chr3.4:60168657-60168676 | None:intergenic | 50.0% | |
| CCTGCCCTTGTTGAATACCA+TGG | - | chr3.4:60168587-60168606 | None:intergenic | 50.0% | |
| CCTGGTATCCAACATGGACA+TGG | + | chr3.4:60168654-60168673 | MS.gene008665:CDS | 50.0% | |
| CGCCATGTGACACCTGTTAA+TGG | + | chr3.4:60169050-60169069 | MS.gene008665:CDS | 50.0% | |
| GACAAGGGAAAGGACTCTAG+AGG | + | chr3.4:60170451-60170470 | MS.gene008665:CDS | 50.0% | |
| GGACCCCACCAAAATTACCA+TGG | + | chr3.4:60168183-60168202 | MS.gene008665:CDS | 50.0% | |
| GGTATTCAACAAGGGCAGGA+TGG | + | chr3.4:60168588-60168607 | MS.gene008665:CDS | 50.0% | |
| GTCCATGTTGAACCACACTC+TGG | - | chr3.4:60168362-60168381 | None:intergenic | 50.0% | |
| TCAACATCAGACCGAAGCGT+TGG | + | chr3.4:60168797-60168816 | MS.gene008665:CDS | 50.0% | |
| !! | CAGGAGCAAGTTGGTGAGAT+TGG | + | chr3.4:60169929-60169948 | MS.gene008665:CDS | 50.0% |
| AAGATCCGGCGACAAGGGAA+AGG | + | chr3.4:60170441-60170460 | MS.gene008665:CDS | 55.0% | |
| ACCATGGCGTTCAACACGGA+CGG | + | chr3.4:60168439-60168458 | MS.gene008665:CDS | 55.0% | |
| AGAGTCCTTTCCCTTGTCGC+CGG | - | chr3.4:60170449-60170468 | None:intergenic | 55.0% | |
| CTAGCCGCTGCTTCTTCCAT+AGG | - | chr3.4:60170207-60170226 | None:intergenic | 55.0% | |
| GAGCAAGAGCAGGAGCAAGT+TGG | + | chr3.4:60169920-60169939 | MS.gene008665:CDS | 55.0% | |
| GCAAGAGCAAGAGCAAGAGC+AGG | + | chr3.4:60169910-60169929 | MS.gene008665:CDS | 55.0% | |
| !! | TGCTGCTGATAATGGTGCGG+CGG | - | chr3.4:60170560-60170579 | None:intergenic | 55.0% |
| ACAGGCAAGATCCGGCGACA+AGG | + | chr3.4:60170435-60170454 | MS.gene008665:CDS | 60.0% | |
| CAGGCAAGATCCGGCGACAA+GGG | + | chr3.4:60170436-60170455 | MS.gene008665:CDS | 60.0% | |
| GGCATTCAACATGGACGGGG+TGG | + | chr3.4:60168516-60168535 | MS.gene008665:CDS | 60.0% | |
| TCCGTCCGTGTTGAACGCCA+TGG | - | chr3.4:60168443-60168462 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 60167964 | 60170583 | 60167964 | ID=MS.gene008665 |
| chr3.4 | mRNA | 60167964 | 60170583 | 60167964 | ID=MS.gene008665.t1;Parent=MS.gene008665 |
| chr3.4 | exon | 60167964 | 60168900 | 60167964 | ID=MS.gene008665.t1.exon1;Parent=MS.gene008665.t1 |
| chr3.4 | CDS | 60167964 | 60168900 | 60167964 | ID=cds.MS.gene008665.t1;Parent=MS.gene008665.t1 |
| chr3.4 | exon | 60168991 | 60169099 | 60168991 | ID=MS.gene008665.t1.exon2;Parent=MS.gene008665.t1 |
| chr3.4 | CDS | 60168991 | 60169099 | 60168991 | ID=cds.MS.gene008665.t1;Parent=MS.gene008665.t1 |
| chr3.4 | exon | 60169205 | 60169383 | 60169205 | ID=MS.gene008665.t1.exon3;Parent=MS.gene008665.t1 |
| chr3.4 | CDS | 60169205 | 60169383 | 60169205 | ID=cds.MS.gene008665.t1;Parent=MS.gene008665.t1 |
| chr3.4 | exon | 60169897 | 60169982 | 60169897 | ID=MS.gene008665.t1.exon4;Parent=MS.gene008665.t1 |
| chr3.4 | CDS | 60169897 | 60169982 | 60169897 | ID=cds.MS.gene008665.t1;Parent=MS.gene008665.t1 |
| chr3.4 | exon | 60170150 | 60170299 | 60170150 | ID=MS.gene008665.t1.exon5;Parent=MS.gene008665.t1 |
| chr3.4 | CDS | 60170150 | 60170299 | 60170150 | ID=cds.MS.gene008665.t1;Parent=MS.gene008665.t1 |
| chr3.4 | exon | 60170389 | 60170583 | 60170389 | ID=MS.gene008665.t1.exon6;Parent=MS.gene008665.t1 |
| chr3.4 | CDS | 60170389 | 60170583 | 60170389 | ID=cds.MS.gene008665.t1;Parent=MS.gene008665.t1 |
| Gene Sequence |
| Protein sequence |
