Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene008695.t1 | XP_013460282.1 | 89.9 | 1130 | 99 | 2 | 3 | 1125 | 2 | 1123 | 0.00E+00 | 2033.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene008695.t1 | F4IXE7 | 32.3 | 520 | 327 | 8 | 581 | 1091 | 597 | 1100 | 1.1e-73 | 280.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene008695.t1 | A0A072UYY7 | 89.9 | 1130 | 99 | 2 | 3 | 1125 | 2 | 1123 | 0.0e+00 | 2033.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene008695.t1 | TR | PHD |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene008695.t1 | MTR_3g464550 | 92.389 | 1130 | 71 | 3 | 3 | 1125 | 2 | 1123 | 0.0 | 2120 |
MS.gene008695.t1 | MTR_5g071340 | 50.320 | 781 | 349 | 14 | 293 | 1058 | 388 | 1144 | 0.0 | 721 |
MS.gene008695.t1 | MTR_5g071340 | 51.004 | 249 | 99 | 7 | 17 | 248 | 26 | 268 | 1.82e-64 | 239 |
MS.gene008695.t1 | MTR_5g024390 | 41.781 | 438 | 218 | 10 | 595 | 1008 | 1 | 425 | 4.79e-109 | 347 |
MS.gene008695.t1 | MTR_5g024500 | 41.667 | 432 | 215 | 10 | 595 | 1002 | 1 | 419 | 5.61e-108 | 345 |
MS.gene008695.t1 | MTR_7g109640 | 43.333 | 420 | 217 | 10 | 596 | 1006 | 383 | 790 | 8.38e-106 | 351 |
MS.gene008695.t1 | MTR_4g027030 | 68.000 | 250 | 58 | 4 | 3 | 230 | 2 | 251 | 2.63e-103 | 325 |
MS.gene008695.t1 | MTR_3g103110 | 37.527 | 469 | 216 | 9 | 596 | 1002 | 338 | 791 | 7.54e-97 | 327 |
MS.gene008695.t1 | MTR_3g103120 | 40.898 | 423 | 219 | 10 | 596 | 1002 | 425 | 832 | 2.74e-93 | 318 |
MS.gene008695.t1 | MTR_1g103830 | 40.097 | 414 | 235 | 8 | 597 | 1003 | 606 | 1013 | 6.53e-84 | 300 |
MS.gene008695.t1 | MTR_2g078040 | 37.010 | 408 | 252 | 5 | 597 | 1002 | 762 | 1166 | 2.23e-82 | 295 |
MS.gene008695.t1 | MTR_1g072130 | 35.244 | 471 | 281 | 10 | 543 | 1003 | 765 | 1221 | 1.75e-79 | 287 |
MS.gene008695.t1 | MTR_7g095140 | 33.648 | 318 | 186 | 6 | 701 | 1012 | 13 | 311 | 1.59e-59 | 209 |
MS.gene008695.t1 | MTR_3g103160 | 34.606 | 419 | 167 | 10 | 599 | 1002 | 110 | 436 | 2.89e-54 | 196 |
MS.gene008695.t1 | MTR_7g102610 | 27.485 | 513 | 282 | 12 | 562 | 1002 | 453 | 947 | 1.35e-43 | 172 |
MS.gene008695.t1 | MTR_4g099530 | 26.616 | 526 | 333 | 17 | 492 | 1002 | 11 | 498 | 4.12e-43 | 166 |
MS.gene008695.t1 | MTR_1g068930 | 28.132 | 423 | 240 | 10 | 608 | 985 | 472 | 875 | 7.24e-43 | 170 |
MS.gene008695.t1 | MTR_1g068930 | 28.132 | 423 | 240 | 10 | 608 | 985 | 435 | 838 | 8.40e-43 | 169 |
MS.gene008695.t1 | MTR_1g062330 | 27.152 | 453 | 256 | 9 | 608 | 1000 | 362 | 800 | 5.75e-40 | 160 |
MS.gene008695.t1 | MTR_4g056990 | 26.897 | 435 | 238 | 11 | 622 | 1003 | 213 | 620 | 3.52e-37 | 149 |
MS.gene008695.t1 | MTR_4g050090 | 27.130 | 446 | 235 | 14 | 629 | 1006 | 222 | 645 | 3.32e-35 | 145 |
MS.gene008695.t1 | MTR_4g057290 | 25.610 | 410 | 228 | 9 | 629 | 978 | 122 | 514 | 3.49e-32 | 134 |
MS.gene008695.t1 | MTR_1g062330 | 25.959 | 339 | 179 | 8 | 619 | 899 | 373 | 697 | 1.58e-22 | 104 |
MS.gene008695.t1 | MTR_2g084425 | 32.804 | 189 | 113 | 4 | 821 | 1007 | 847 | 1023 | 2.47e-22 | 104 |
MS.gene008695.t1 | MTR_2g084425 | 25.210 | 238 | 119 | 3 | 622 | 811 | 484 | 710 | 1.08e-16 | 86.3 |
MS.gene008695.t1 | MTR_2g084425 | 25.316 | 237 | 118 | 3 | 622 | 810 | 484 | 709 | 1.26e-16 | 85.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene008695.t1 | AT5G58610 | 36.306 | 1099 | 562 | 29 | 12 | 1043 | 23 | 1050 | 0.0 | 653 |
MS.gene008695.t1 | AT5G58610 | 36.583 | 1077 | 552 | 28 | 27 | 1043 | 36 | 1041 | 0.0 | 651 |
MS.gene008695.t1 | AT5G58610 | 36.583 | 1077 | 552 | 28 | 27 | 1043 | 36 | 1041 | 0.0 | 651 |
MS.gene008695.t1 | AT5G58610 | 36.777 | 1055 | 534 | 26 | 12 | 1002 | 23 | 1008 | 0.0 | 648 |
MS.gene008695.t1 | AT5G58610 | 36.777 | 1055 | 534 | 26 | 12 | 1002 | 23 | 1008 | 0.0 | 648 |
MS.gene008695.t1 | AT5G58610 | 36.026 | 1077 | 532 | 31 | 27 | 1043 | 36 | 1015 | 0.0 | 617 |
MS.gene008695.t1 | AT5G58610 | 36.026 | 1077 | 532 | 31 | 27 | 1043 | 36 | 1015 | 0.0 | 617 |
MS.gene008695.t1 | AT5G58610 | 35.494 | 1003 | 514 | 26 | 12 | 950 | 23 | 956 | 0.0 | 581 |
MS.gene008695.t1 | AT5G58610 | 35.780 | 981 | 504 | 25 | 27 | 950 | 36 | 947 | 0.0 | 578 |
MS.gene008695.t1 | AT5G58610 | 34.783 | 943 | 489 | 25 | 27 | 912 | 36 | 909 | 1.99e-170 | 526 |
MS.gene008695.t1 | AT5G58610 | 36.352 | 762 | 391 | 17 | 305 | 1043 | 129 | 819 | 7.16e-148 | 465 |
MS.gene008695.t1 | AT1G05380 | 38.789 | 446 | 260 | 8 | 571 | 1008 | 494 | 934 | 8.60e-91 | 317 |
MS.gene008695.t1 | AT1G05380 | 38.789 | 446 | 260 | 8 | 571 | 1008 | 494 | 934 | 8.60e-91 | 317 |
MS.gene008695.t1 | AT1G05380 | 38.789 | 446 | 260 | 8 | 571 | 1008 | 494 | 934 | 8.60e-91 | 317 |
MS.gene008695.t1 | AT3G14980 | 35.931 | 462 | 278 | 7 | 564 | 1011 | 575 | 1032 | 9.86e-88 | 306 |
MS.gene008695.t1 | AT3G14980 | 35.931 | 462 | 278 | 7 | 564 | 1011 | 530 | 987 | 2.28e-87 | 307 |
MS.gene008695.t1 | AT3G14980 | 35.931 | 462 | 278 | 7 | 564 | 1011 | 575 | 1032 | 3.39e-87 | 307 |
MS.gene008695.t1 | AT3G14980 | 35.931 | 462 | 278 | 7 | 564 | 1011 | 575 | 1032 | 3.39e-87 | 307 |
MS.gene008695.t1 | AT3G14980 | 35.931 | 462 | 278 | 7 | 564 | 1011 | 575 | 1032 | 3.39e-87 | 307 |
MS.gene008695.t1 | AT5G36740 | 31.561 | 602 | 357 | 17 | 447 | 1012 | 384 | 966 | 3.38e-86 | 304 |
MS.gene008695.t1 | AT5G36740 | 31.561 | 602 | 357 | 17 | 447 | 1012 | 384 | 966 | 3.38e-86 | 304 |
MS.gene008695.t1 | AT5G36740 | 30.882 | 612 | 358 | 18 | 447 | 1012 | 231 | 823 | 1.21e-82 | 291 |
MS.gene008695.t1 | AT4G14920 | 36.222 | 450 | 277 | 7 | 570 | 1015 | 553 | 996 | 8.19e-77 | 276 |
MS.gene008695.t1 | AT4G14920 | 36.613 | 437 | 267 | 7 | 570 | 1002 | 553 | 983 | 1.75e-76 | 275 |
MS.gene008695.t1 | AT4G14920 | 36.613 | 437 | 267 | 7 | 570 | 1002 | 553 | 983 | 1.75e-76 | 275 |
MS.gene008695.t1 | AT5G36670 | 28.964 | 618 | 366 | 19 | 447 | 1012 | 384 | 980 | 4.11e-73 | 265 |
MS.gene008695.t1 | AT5G36670 | 28.964 | 618 | 366 | 19 | 447 | 1012 | 384 | 980 | 4.11e-73 | 265 |
MS.gene008695.t1 | AT5G36670 | 28.344 | 628 | 367 | 20 | 447 | 1012 | 231 | 837 | 3.54e-69 | 252 |
MS.gene008695.t1 | AT5G36740 | 30.550 | 527 | 318 | 16 | 447 | 944 | 384 | 891 | 4.01e-69 | 250 |
MS.gene008695.t1 | AT5G36740 | 30.550 | 527 | 318 | 16 | 447 | 944 | 384 | 891 | 4.01e-69 | 250 |
MS.gene008695.t1 | AT5G36670 | 30.550 | 527 | 318 | 16 | 447 | 944 | 384 | 891 | 4.01e-69 | 250 |
MS.gene008695.t1 | AT5G36670 | 28.344 | 628 | 367 | 20 | 447 | 1012 | 384 | 990 | 5.32e-69 | 253 |
MS.gene008695.t1 | AT5G63900 | 43.322 | 307 | 142 | 11 | 704 | 1002 | 258 | 540 | 1.10e-66 | 236 |
MS.gene008695.t1 | AT3G14980 | 33.699 | 365 | 224 | 7 | 564 | 914 | 575 | 935 | 5.94e-59 | 220 |
MS.gene008695.t1 | AT2G27980 | 29.425 | 452 | 239 | 10 | 633 | 1020 | 637 | 1072 | 3.32e-47 | 184 |
MS.gene008695.t1 | AT2G37520 | 28.935 | 432 | 233 | 10 | 624 | 1000 | 401 | 813 | 1.87e-44 | 174 |
MS.gene008695.t1 | AT3G53680 | 27.918 | 437 | 254 | 8 | 624 | 1012 | 418 | 841 | 4.67e-43 | 170 |
MS.gene008695.t1 | AT3G53680 | 27.918 | 437 | 254 | 8 | 624 | 1012 | 420 | 843 | 5.35e-43 | 170 |
MS.gene008695.t1 | AT2G36720 | 26.974 | 456 | 253 | 10 | 608 | 1000 | 533 | 971 | 4.48e-38 | 155 |
MS.gene008695.t1 | AT2G36720 | 26.974 | 456 | 253 | 10 | 608 | 1000 | 533 | 971 | 4.48e-38 | 155 |
Find 254 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACACCTCTTCTTCTATTATT+TGG | 0.106047 | 3.4:-59676766 | None:intergenic |
GGGCACCGTACTGTGCTTTC+TGG | 0.111625 | 3.4:+59677204 | MS.gene008695:CDS |
ATTCAGAAATCGACTATTTC+TGG | 0.151862 | 3.4:+59676862 | MS.gene008695:CDS |
AACCAAGACAGAACATTTAA+AGG | 0.177176 | 3.4:-59677126 | None:intergenic |
CCAGTTGGCAAAACCGAATT+TGG | 0.185947 | 3.4:-59681333 | None:intergenic |
CACATAACTTCCGGATTTAC+TGG | 0.222960 | 3.4:-59677958 | None:intergenic |
ACCAAGTGCCAATATCTTTC+TGG | 0.242341 | 3.4:+59677323 | MS.gene008695:CDS |
CGGTATCAGTAAGGCAAATT+TGG | 0.243152 | 3.4:+59675858 | MS.gene008695:CDS |
GAGAATATTCTGAATGATAA+TGG | 0.245574 | 3.4:+59675479 | MS.gene008695:CDS |
TAATAGTAAAAGTGGATTAT+TGG | 0.263495 | 3.4:+59678313 | MS.gene008695:CDS |
CATCAGAAGCTCACGCAATT+AGG | 0.270532 | 3.4:+59681141 | MS.gene008695:intron |
AATTGTGATCTTTCAAAGTT+TGG | 0.278158 | 3.4:-59681240 | None:intergenic |
GGGTTTCTATTCCGTACTTC+TGG | 0.279523 | 3.4:+59680442 | MS.gene008695:CDS |
TGAATGGTCAAGGTATTTAA+AGG | 0.280119 | 3.4:-59676892 | None:intergenic |
CCGAAAATGGTCTTGGTATA+AGG | 0.282380 | 3.4:+59676488 | MS.gene008695:CDS |
TGAAATGAAGGTCGGAATTC+AGG | 0.287717 | 3.4:+59675739 | MS.gene008695:CDS |
CATCGCTTCGGCGCTTTGGC+AGG | 0.290256 | 3.4:-59677029 | None:intergenic |
TGGAAACATCTTGCATATAT+TGG | 0.290775 | 3.4:+59676331 | MS.gene008695:CDS |
ATTTGTTCCGTTTGCCGCTT+TGG | 0.297414 | 3.4:+59677456 | MS.gene008695:CDS |
GATACATGGACCGGCGCTTT+TGG | 0.305649 | 3.4:+59681204 | MS.gene008695:CDS |
TTCATTTCATCTCCCAAATC+AGG | 0.306262 | 3.4:-59675725 | None:intergenic |
GTAATGTCGATATTCTTTCT+AGG | 0.309285 | 3.4:+59675021 | MS.gene008695:CDS |
GCAAGAAGAGGATTCCTTTA+GGG | 0.310158 | 3.4:-59678393 | None:intergenic |
AACTCTTCTCCGTCCGAAAA+TGG | 0.313482 | 3.4:+59676475 | MS.gene008695:CDS |
CCTGCAATCGGGCAGTTAAA+AGG | 0.319570 | 3.4:+59676680 | MS.gene008695:CDS |
GATCTTGCATTATTTGTATC+TGG | 0.322209 | 3.4:-59677371 | None:intergenic |
AGTGAGTGTTTCAAGTGTTT+TGG | 0.328028 | 3.4:+59675523 | MS.gene008695:CDS |
GAACCTGTTGTTCCTTCGTC+TGG | 0.332759 | 3.4:+59676082 | MS.gene008695:CDS |
GGGATGAAGTTACAGAGAAA+TGG | 0.333962 | 3.4:+59675783 | MS.gene008695:CDS |
TGAGTAAACGTGGGAGGATT+AGG | 0.333992 | 3.4:+59675564 | MS.gene008695:CDS |
GAGAAATGTGATCTTAAGTA+TGG | 0.340078 | 3.4:+59675611 | MS.gene008695:CDS |
TGCAAGAAGAGGATTCCTTT+AGG | 0.345444 | 3.4:-59678394 | None:intergenic |
GCTTGGTAAACTTCAGAAAC+TGG | 0.348392 | 3.4:-59681495 | None:intergenic |
TTGTCCGCACCCACTGAAAC+TGG | 0.359349 | 3.4:-59678239 | None:intergenic |
CTTATTGCAATGGATTCCAT+TGG | 0.361377 | 3.4:-59676404 | None:intergenic |
TTTCTCGGCCTTGAAACTTC+CGG | 0.373286 | 3.4:+59676009 | MS.gene008695:CDS |
CATGTTGTTACCAAGGTCTA+AGG | 0.373440 | 3.4:+59677161 | MS.gene008695:CDS |
AAATATTCCCTCTCCAAATT+CGG | 0.374447 | 3.4:+59681320 | MS.gene008695:CDS |
GAAGCGATGAATCAACTCTA+AGG | 0.378506 | 3.4:+59677043 | MS.gene008695:CDS |
TGGTCAGTGTAGCAACTATT+AGG | 0.379578 | 3.4:+59680480 | MS.gene008695:CDS |
GATGGACTAAGAGGCACATT+TGG | 0.383730 | 3.4:-59676535 | None:intergenic |
GTGCGTTGATGTAAACTATC+AGG | 0.386742 | 3.4:+59675637 | MS.gene008695:CDS |
TGTTGTTGGTCCACAGGAAT+TGG | 0.390924 | 3.4:-59682675 | None:intergenic |
AATGCAAGATCACAAGTCTA+AGG | 0.396731 | 3.4:+59677383 | MS.gene008695:CDS |
GATTAGGCCAGTGCCTCCTT+TGG | 0.397024 | 3.4:+59675580 | MS.gene008695:CDS |
GAACTTGATAATAGTAAAAG+TGG | 0.398807 | 3.4:+59678305 | MS.gene008695:CDS |
ACCATCGGCCAGAAAGATAT+TGG | 0.399541 | 3.4:-59677331 | None:intergenic |
AAACTTCCGGAGATGGAATC+AGG | 0.401835 | 3.4:+59676022 | MS.gene008695:CDS |
TCGCATATTAATGGATGAAT+TGG | 0.403985 | 3.4:+59680698 | MS.gene008695:CDS |
TGGAATGTGTCGCATATTAA+TGG | 0.405995 | 3.4:+59680689 | MS.gene008695:CDS |
ATTACTAGCACTACTGCTTC+CGG | 0.409786 | 3.4:-59681466 | None:intergenic |
GGCACCGTACTGTGCTTTCT+GGG | 0.413489 | 3.4:+59677205 | MS.gene008695:CDS |
TTTGTCCATCGTGTCGATGC+GGG | 0.414181 | 3.4:+59677672 | MS.gene008695:CDS |
GTAGCCAAAGCAAATTCAAC+GGG | 0.414503 | 3.4:+59677699 | MS.gene008695:CDS |
ACTTAATCGAATGAATTTCC+AGG | 0.417064 | 3.4:+59680421 | MS.gene008695:CDS |
TTTCATTCTGGCAATGTTGT+TGG | 0.419236 | 3.4:-59682689 | None:intergenic |
ACAGCCCTTCAAAGTCTGTT+AGG | 0.423835 | 3.4:+59678212 | MS.gene008695:CDS |
TGATGGTACCCGGAAAATCT+AGG | 0.425301 | 3.4:-59681278 | None:intergenic |
TCATAAGACGTGTCTTGGTC+TGG | 0.426619 | 3.4:+59677518 | MS.gene008695:CDS |
CGAGTATCTCCTCTAGTTGT+GGG | 0.428093 | 3.4:+59676574 | MS.gene008695:CDS |
CTTCTTCTATTATTTGGAGG+TGG | 0.430595 | 3.4:-59676760 | None:intergenic |
AACCTTTAAATGTTCTGTCT+TGG | 0.434230 | 3.4:+59677124 | MS.gene008695:CDS |
TTCCATCTCCGGAAGTTTCA+AGG | 0.435157 | 3.4:-59676017 | None:intergenic |
CCGGCTTTCCACATAACTTC+CGG | 0.435342 | 3.4:-59677967 | None:intergenic |
TCCTTCGAATTTCATGCTAC+TGG | 0.436416 | 3.4:+59677285 | MS.gene008695:CDS |
CCTCTTCTTCTATTATTTGG+AGG | 0.441510 | 3.4:-59676763 | None:intergenic |
TCTTAGGGTCCTTGGAGATA+AGG | 0.443751 | 3.4:+59680620 | MS.gene008695:intron |
AGTAGAGATACCAGTAAATC+CGG | 0.447861 | 3.4:+59677948 | MS.gene008695:CDS |
TTATTGCAATGGATTCCATT+GGG | 0.450609 | 3.4:-59676403 | None:intergenic |
CTCTTCTTGCAGAGATCTGA+TGG | 0.450854 | 3.4:+59678406 | MS.gene008695:CDS |
TTTGTGGAGACACTTGATAA+TGG | 0.452655 | 3.4:+59675946 | MS.gene008695:CDS |
GTTCACACTGAATGCATGTA+AGG | 0.456612 | 3.4:-59677742 | None:intergenic |
TCTTCTTGAGTGCATGTTTG+TGG | 0.458079 | 3.4:-59676657 | None:intergenic |
GGACAAAACCATTCACCATC+AGG | 0.458765 | 3.4:-59677656 | None:intergenic |
AATGGGAGCGACGAGGGAAA+TGG | 0.459932 | 3.4:+59675801 | MS.gene008695:CDS |
TCATGAGGAAAATGTTGATC+AGG | 0.461489 | 3.4:+59676912 | MS.gene008695:CDS |
CACTCAAGAAGACCTGCAAT+CGG | 0.463785 | 3.4:+59676668 | MS.gene008695:CDS |
TGAATGATAAGAAGGATTTG+TGG | 0.464023 | 3.4:+59675930 | MS.gene008695:CDS |
CGAATAAATCAAGTGCAAAT+CGG | 0.466377 | 3.4:+59676974 | MS.gene008695:CDS |
AGGTGAACTATTATCTGAAA+AGG | 0.467810 | 3.4:+59676042 | MS.gene008695:CDS |
TTAGAGTTGATTCATCGCTT+CGG | 0.468082 | 3.4:-59677041 | None:intergenic |
GATTCATCGCTTCGGCGCTT+TGG | 0.468963 | 3.4:-59677033 | None:intergenic |
GGCCTTGAAACTTCCGGAGA+TGG | 0.471082 | 3.4:+59676015 | MS.gene008695:CDS |
AGGCAAGAGGAAGACGCCTT+TGG | 0.471117 | 3.4:-59677090 | None:intergenic |
CAAATTTGCCTTACTGATAC+CGG | 0.471321 | 3.4:-59675857 | None:intergenic |
GATTGAGGAGTCGTATCTTC+CGG | 0.473378 | 3.4:+59675838 | MS.gene008695:CDS |
GAAGGCGATAATGATAATCT+TGG | 0.474333 | 3.4:+59682355 | MS.gene008695:CDS |
AGAATATTCTGAATGATAAT+GGG | 0.475569 | 3.4:+59675480 | MS.gene008695:CDS |
TTTCCAGACGAAGGAACAAC+AGG | 0.475742 | 3.4:-59676085 | None:intergenic |
ATCGTTGGATCAACAAATGA+TGG | 0.477086 | 3.4:+59681539 | MS.gene008695:CDS |
TGGCAATGTTGTTGGTCCAC+AGG | 0.477715 | 3.4:-59682681 | None:intergenic |
GGATGAAGTTACAGAGAAAT+GGG | 0.477755 | 3.4:+59675784 | MS.gene008695:CDS |
AATACGGATTACTCAGGATT+GGG | 0.481439 | 3.4:+59675763 | MS.gene008695:CDS |
AACATCTTGCATATATTGGA+TGG | 0.482403 | 3.4:+59676335 | MS.gene008695:CDS |
GGCAACTATGACATCTTTGA+AGG | 0.483635 | 3.4:+59676300 | MS.gene008695:CDS |
TCTGGAGAGAAATGAAGATC+TGG | 0.483681 | 3.4:+59680460 | MS.gene008695:CDS |
GATAGACAAAAGAGAATCGT+TGG | 0.484937 | 3.4:+59681524 | MS.gene008695:CDS |
CAAAATGAAGTTTCATGCAA+CGG | 0.485051 | 3.4:+59676124 | MS.gene008695:CDS |
AAAAGTGCTCTCTTGTAAAG+TGG | 0.486293 | 3.4:+59682742 | MS.gene008695:CDS |
ACATATTGCTTAACAGCATC+GGG | 0.489875 | 3.4:-59676259 | None:intergenic |
AGTAAACTTTCTTATTGCAA+TGG | 0.489917 | 3.4:-59676414 | None:intergenic |
ATGACGACGATACTGAAATC+TGG | 0.490750 | 3.4:-59680667 | None:intergenic |
AACTCAACCAAAGGAGGCAC+TGG | 0.491829 | 3.4:-59675587 | None:intergenic |
ATTCTGAATGATAATGGGTT+GGG | 0.491960 | 3.4:+59675485 | MS.gene008695:CDS |
AGTTCACCTGATTCCATCTC+CGG | 0.494011 | 3.4:-59676028 | None:intergenic |
TCTCCGTCCGAAAATGGTCT+TGG | 0.497129 | 3.4:+59676481 | MS.gene008695:CDS |
CAGTAAATCCGGAAGTTATG+TGG | 0.497239 | 3.4:+59677959 | MS.gene008695:CDS |
AAATACGGATTACTCAGGAT+TGG | 0.497965 | 3.4:+59675762 | MS.gene008695:CDS |
TTCGCCTCCAAAGCGGCAAA+CGG | 0.498884 | 3.4:-59677463 | None:intergenic |
TTCATTTCTCTCCAGAAGTA+CGG | 0.498951 | 3.4:-59680453 | None:intergenic |
AGGTCGGAATTCAGGAAATA+CGG | 0.503071 | 3.4:+59675747 | MS.gene008695:CDS |
TATTCTGAATGATAATGGGT+TGG | 0.503416 | 3.4:+59675484 | MS.gene008695:CDS |
TGTTGTTCCTTCGTCTGGAA+AGG | 0.504783 | 3.4:+59676087 | MS.gene008695:CDS |
CCTCCAAATAATAGAAGAAG+AGG | 0.505734 | 3.4:+59676763 | MS.gene008695:CDS |
GAGAAGAATTTCTGTTTCAG+TGG | 0.506628 | 3.4:-59676802 | None:intergenic |
ATGGACATTGAATGATAAGA+AGG | 0.507839 | 3.4:+59675922 | MS.gene008695:CDS |
GTAGCTGAAGTACCTCTTGT+TGG | 0.510042 | 3.4:+59680642 | MS.gene008695:CDS |
TTAAAGGTTTATGATGTGAA+AGG | 0.510336 | 3.4:-59677110 | None:intergenic |
GATATTGGCACTTGGTCTGA+TGG | 0.512828 | 3.4:-59677316 | None:intergenic |
GGAAGTAGTTGGTGACTACT+TGG | 0.513078 | 3.4:+59675967 | MS.gene008695:CDS |
GCTGTCCTAACAGACTTTGA+AGG | 0.513374 | 3.4:-59678217 | None:intergenic |
AAAGCTGAAAATCAATGAAA+GGG | 0.513454 | 3.4:+59674993 | MS.gene008695:CDS |
GCCAATATCTTTCTGGCCGA+TGG | 0.514917 | 3.4:+59677330 | MS.gene008695:CDS |
CATCAGATCTCTGCAAGAAG+AGG | 0.515594 | 3.4:-59678405 | None:intergenic |
CACATATTGCTTAACAGCAT+CGG | 0.516322 | 3.4:-59676260 | None:intergenic |
CGAAAACAAGATGCTATCTC+CGG | 0.516683 | 3.4:+59681447 | MS.gene008695:CDS |
GTTAGGACAGCCAGTTTCAG+TGG | 0.517338 | 3.4:+59678229 | MS.gene008695:CDS |
ACCAGGGTGGTAAACAATAC+AGG | 0.518289 | 3.4:+59676371 | MS.gene008695:CDS |
CGTATCTTCCGGTATCAGTA+AGG | 0.521329 | 3.4:+59675849 | MS.gene008695:CDS |
GGTACTGAGATCAAATGAAA+GGG | 0.522206 | 3.4:+59677065 | MS.gene008695:CDS |
TGTTCCGTTTGCCGCTTTGG+AGG | 0.523366 | 3.4:+59677459 | MS.gene008695:CDS |
AATTCGCCGCGATTGGTGAA+TGG | 0.524576 | 3.4:+59675903 | MS.gene008695:CDS |
AGGATCTCCCTGATGGTGAA+TGG | 0.525582 | 3.4:+59677648 | MS.gene008695:intron |
CCGAGTATCTCCTCTAGTTG+TGG | 0.526543 | 3.4:+59676573 | MS.gene008695:CDS |
ATCTGTTCAGATGGACTAAG+AGG | 0.527881 | 3.4:-59676544 | None:intergenic |
GGACGGAGAAGAGTTCATCA+TGG | 0.529822 | 3.4:-59676467 | None:intergenic |
CAAAGCTGAAAATCAATGAA+AGG | 0.530613 | 3.4:+59674992 | MS.gene008695:CDS |
TGAATGTTTCGAGCCCCTAA+AGG | 0.530764 | 3.4:+59678379 | MS.gene008695:CDS |
CTTAATCGAATGAATTTCCA+GGG | 0.533875 | 3.4:+59680422 | MS.gene008695:CDS |
GGGTACTGAGATCAAATGAA+AGG | 0.534729 | 3.4:+59677064 | MS.gene008695:CDS |
AAACTATCAGGAAGCTTGGT+GGG | 0.534916 | 3.4:+59675649 | MS.gene008695:CDS |
CTAGACGAAGGAAGGCGAAA+GGG | 0.537831 | 3.4:+59682781 | MS.gene008695:CDS |
GACAATATTACATGTTCCCA+CGG | 0.538718 | 3.4:-59676220 | None:intergenic |
GAAAATCAATGAAAGGGTTG+AGG | 0.539230 | 3.4:+59674999 | MS.gene008695:CDS |
ATCATCTGAAAGCAGAAGGA+TGG | 0.539714 | 3.4:+59676725 | MS.gene008695:CDS |
TTGGGAGATGAAATGAAGGT+CGG | 0.540759 | 3.4:+59675731 | MS.gene008695:CDS |
CTACTTGGCTGTTACAGTAA+AGG | 0.541628 | 3.4:+59675982 | MS.gene008695:CDS |
TATCAGGAAGCTTGGTGGGA+AGG | 0.543603 | 3.4:+59675653 | MS.gene008695:CDS |
TCTTGTAAAGTGGAGTGGAC+TGG | 0.545279 | 3.4:+59682752 | MS.gene008695:CDS |
ATCAAATGAAAGGGTGCCAA+AGG | 0.545984 | 3.4:+59677074 | MS.gene008695:CDS |
CCGGAAGTTATGTGGAAAGC+CGG | 0.546646 | 3.4:+59677967 | MS.gene008695:CDS |
CCAAACCCTATCAATGGAGG+AGG | 0.547670 | 3.4:+59674942 | None:intergenic |
ACCTGTATTGTTTACCACCC+TGG | 0.547980 | 3.4:-59676372 | None:intergenic |
TCTACCACAGTGGGAACAGC+AGG | 0.548324 | 3.4:-59681183 | None:intergenic |
CGGTTCTGAATCTGTTCAGA+TGG | 0.549079 | 3.4:-59676553 | None:intergenic |
TTCCCACTGTGGTAGATACA+TGG | 0.549468 | 3.4:+59681190 | MS.gene008695:CDS |
ATGTAAACTATCAGGAAGCT+TGG | 0.554158 | 3.4:+59675645 | MS.gene008695:CDS |
CATGTATAGGATCTCCCTGA+TGG | 0.557404 | 3.4:+59677641 | MS.gene008695:intron |
TGCTCTCTTGTAAAGTGGAG+TGG | 0.557520 | 3.4:+59682747 | MS.gene008695:CDS |
AGATTTCAGTATCGTCGTCA+TGG | 0.558925 | 3.4:+59680669 | MS.gene008695:CDS |
TTCTGGCACATGATGGTACC+CGG | 0.559347 | 3.4:-59681288 | None:intergenic |
AAATGATACGTGTGATGGAA+TGG | 0.561531 | 3.4:+59675682 | MS.gene008695:CDS |
TCATATCATAAGACGTGTCT+TGG | 0.562434 | 3.4:+59677513 | MS.gene008695:CDS |
ATCGGAAGCGAAAACGCTTG+AGG | 0.563012 | 3.4:+59676992 | MS.gene008695:CDS |
GAAGTTTCATGCAACGGTGC+TGG | 0.563913 | 3.4:+59676130 | MS.gene008695:CDS |
CGCAAGTCCTTTCCAGACGA+AGG | 0.564340 | 3.4:-59676094 | None:intergenic |
ACTCAAGAAGACCTGCAATC+GGG | 0.566161 | 3.4:+59676669 | MS.gene008695:CDS |
CAAGAAGAGGATTCCTTTAG+GGG | 0.566868 | 3.4:-59678392 | None:intergenic |
TGGTATTCCACAGTGGCTTG+AGG | 0.567127 | 3.4:-59676637 | None:intergenic |
ATGGGAAATTGACATTCACC+AGG | 0.568448 | 3.4:+59676354 | MS.gene008695:CDS |
CTGCGGAAAAGACTGTGAAA+AGG | 0.570141 | 3.4:+59677992 | MS.gene008695:CDS |
CTGTCCTAACAGACTTTGAA+GGG | 0.570641 | 3.4:-59678216 | None:intergenic |
CAGAGAAATGGGAGCGACGA+GGG | 0.570951 | 3.4:+59675795 | MS.gene008695:CDS |
ATTTAAAGTCAAATAATCCG+TGG | 0.572355 | 3.4:+59676203 | MS.gene008695:CDS |
TTGCAATGGATTCCATTGGG+TGG | 0.572732 | 3.4:-59676400 | None:intergenic |
TCATCTGCCACTGCAACAGA+TGG | 0.573346 | 3.4:-59676601 | None:intergenic |
TTAGGACAGCCAGTTTCAGT+GGG | 0.574149 | 3.4:+59678230 | MS.gene008695:CDS |
TCATTTCATCTCCCAAATCA+GGG | 0.574454 | 3.4:-59675724 | None:intergenic |
GGAACATGACAGTCACCGGC+AGG | 0.574813 | 3.4:-59676514 | None:intergenic |
TCAGGAAATACGGATTACTC+AGG | 0.576247 | 3.4:+59675757 | MS.gene008695:CDS |
ACATCTTGCATATATTGGAT+GGG | 0.577259 | 3.4:+59676336 | MS.gene008695:CDS |
TAAACTATCAGGAAGCTTGG+TGG | 0.578343 | 3.4:+59675648 | MS.gene008695:CDS |
ATTAATGGATGAATTGGAGA+AGG | 0.579634 | 3.4:+59680704 | MS.gene008695:CDS |
AGAAATCATCTGAAAGCAGA+AGG | 0.585694 | 3.4:+59676721 | MS.gene008695:CDS |
GCCAGTAGCATGAAATTCGA+AGG | 0.587705 | 3.4:-59677286 | None:intergenic |
AAATACCTTGACCATTCATG+AGG | 0.588685 | 3.4:+59676897 | MS.gene008695:CDS |
GGCAAAACCGAATTTGGAGA+GGG | 0.589581 | 3.4:-59681327 | None:intergenic |
ACGTCTTATGATATGAAGAC+GGG | 0.594381 | 3.4:-59677506 | None:intergenic |
ACAGCCAGTTTCAGTGGGTG+CGG | 0.594757 | 3.4:+59678235 | MS.gene008695:CDS |
ATTTGGAACATGACAGTCAC+CGG | 0.595709 | 3.4:-59676518 | None:intergenic |
GCCAGAAAGATATTGGCACT+TGG | 0.596693 | 3.4:-59677324 | None:intergenic |
TCTGGGCGAATAACTCATGA+AGG | 0.597089 | 3.4:+59677222 | MS.gene008695:CDS |
TGTAGCCAAAGCAAATTCAA+CGG | 0.597213 | 3.4:+59677698 | MS.gene008695:CDS |
CTTTGAAAATCCAAAAGCGC+CGG | 0.597314 | 3.4:-59681214 | None:intergenic |
TGATTTGGGAGATGAAATGA+AGG | 0.601531 | 3.4:+59675727 | MS.gene008695:CDS |
TACAGGTACAAGCCACCCAA+TGG | 0.603909 | 3.4:+59676388 | MS.gene008695:CDS |
CACGTCTTATGATATGAAGA+CGG | 0.605602 | 3.4:-59677507 | None:intergenic |
GGTGTACTCTAGACGAAGGA+AGG | 0.610377 | 3.4:+59682773 | MS.gene008695:CDS |
TTCTCAAACTCAACCAAAGG+AGG | 0.613689 | 3.4:-59675593 | None:intergenic |
GGGGCTTCCATCTGTTGCAG+TGG | 0.616057 | 3.4:+59676594 | MS.gene008695:CDS |
TAAGACGTGTCTTGGTCTGG+AGG | 0.616442 | 3.4:+59677521 | MS.gene008695:CDS |
TATGTGGAAAGCCGGTTCTG+CGG | 0.616945 | 3.4:+59677975 | MS.gene008695:CDS |
TAGACGAAGGAAGGCGAAAG+GGG | 0.617367 | 3.4:+59682782 | MS.gene008695:CDS |
GAAAGGGGAACATGAAGCGT+AGG | 0.617607 | 3.4:+59682797 | MS.gene008695:CDS |
GATGGAAGCCCCACAACTAG+AGG | 0.618341 | 3.4:-59676583 | None:intergenic |
CTTGGTATAAGGCATCCTGC+CGG | 0.619801 | 3.4:+59676499 | MS.gene008695:CDS |
AAGCGATGAATCAACTCTAA+GGG | 0.620220 | 3.4:+59677044 | MS.gene008695:CDS |
TTTATGATGTGAAAGGCAAG+AGG | 0.620240 | 3.4:-59677103 | None:intergenic |
TTCGCCCAGAAAGCACAGTA+CGG | 0.622172 | 3.4:-59677209 | None:intergenic |
AGATAAGAGCGATCTACCAT+CGG | 0.623826 | 3.4:-59677346 | None:intergenic |
TCTAGACGAAGGAAGGCGAA+AGG | 0.625198 | 3.4:+59682780 | MS.gene008695:CDS |
ATCGGGTCATTGAGTAAACG+TGG | 0.626423 | 3.4:+59675554 | MS.gene008695:CDS |
GGCGGAGCAACCAATTCCTG+TGG | 0.627539 | 3.4:+59682665 | MS.gene008695:intron |
CAATGTCCATTCACCAATCG+CGG | 0.628022 | 3.4:-59675909 | None:intergenic |
TTTAAAGTCAAATAATCCGT+GGG | 0.628929 | 3.4:+59676204 | MS.gene008695:CDS |
TGAAATCTGGTACCAACAAG+AGG | 0.629514 | 3.4:-59680654 | None:intergenic |
TGGCAAAACCGAATTTGGAG+AGG | 0.630456 | 3.4:-59681328 | None:intergenic |
GTTGTAAATGATACGTGTGA+TGG | 0.630651 | 3.4:+59675677 | MS.gene008695:CDS |
ACTGTGGTAGATACATGGAC+CGG | 0.633569 | 3.4:+59681195 | MS.gene008695:CDS |
ATGCAACGGTGCTGGTGAAG+CGG | 0.634047 | 3.4:+59676138 | MS.gene008695:CDS |
CCACAACTAGAGGAGATACT+CGG | 0.637983 | 3.4:-59676573 | None:intergenic |
AAACGCTTGAGGAATTCAGA+TGG | 0.640084 | 3.4:+59677003 | MS.gene008695:CDS |
GAAGTACGGAATAGAAACCC+TGG | 0.641639 | 3.4:-59680439 | None:intergenic |
CTTCAGCTACCTTATCTCCA+AGG | 0.642106 | 3.4:-59680629 | None:intergenic |
AAGTTCACAACTCTCAGAGT+CGG | 0.642483 | 3.4:-59678288 | None:intergenic |
CGTGTGATGGAATGGAGGAG+AGG | 0.644455 | 3.4:+59675690 | MS.gene008695:CDS |
CATTTCTCAAACTCAACCAA+AGG | 0.645043 | 3.4:-59675596 | None:intergenic |
GAAGCTCACGCAATTAGGAG+TGG | 0.645058 | 3.4:+59681146 | MS.gene008695:intron |
GCAAGATCACAAGTCTAAGG+AGG | 0.646340 | 3.4:+59677386 | MS.gene008695:CDS |
TGATACGTGTGATGGAATGG+AGG | 0.646808 | 3.4:+59675685 | MS.gene008695:CDS |
CCACACAGTCATTTACGTCA+AGG | 0.648733 | 3.4:+59677420 | MS.gene008695:CDS |
GAGTATCTCCTCTAGTTGTG+GGG | 0.652442 | 3.4:+59676575 | MS.gene008695:CDS |
CACTTGATAATGGAAGTAGT+TGG | 0.653371 | 3.4:+59675956 | MS.gene008695:CDS |
GTCCATGTATCTACCACAGT+GGG | 0.654636 | 3.4:-59681192 | None:intergenic |
CAAATCCCGCATCGACACGA+TGG | 0.658482 | 3.4:-59677677 | None:intergenic |
ACAGCAACATGTTGTTACCA+AGG | 0.659467 | 3.4:+59677154 | MS.gene008695:CDS |
GACAAAACCATTCACCATCA+GGG | 0.668378 | 3.4:-59677655 | None:intergenic |
ACAGAGAAATGGGAGCGACG+AGG | 0.673479 | 3.4:+59675794 | MS.gene008695:CDS |
TTTACCTGCTGTTCCCACTG+TGG | 0.676231 | 3.4:+59681179 | MS.gene008695:CDS |
TGGGTGCGGACAATCTAACA+TGG | 0.678752 | 3.4:+59678249 | MS.gene008695:CDS |
AAAGAAGTTCGCCTCCAAAG+CGG | 0.687855 | 3.4:-59677470 | None:intergenic |
CAAACCCTATCAATGGAGGA+GGG | 0.690346 | 3.4:+59674943 | None:intergenic |
GGTCATTGAGTAAACGTGGG+AGG | 0.693475 | 3.4:+59675558 | MS.gene008695:CDS |
TGTTATCGACTGTGTCACCA+TGG | 0.695665 | 3.4:+59682384 | MS.gene008695:CDS |
ATGTTTGTGGTATTCCACAG+TGG | 0.700775 | 3.4:-59676644 | None:intergenic |
TCGGGTCATTGAGTAAACGT+GGG | 0.701785 | 3.4:+59675555 | MS.gene008695:CDS |
CCTTGACGTAAATGACTGTG+TGG | 0.705044 | 3.4:-59677420 | None:intergenic |
GACTGGTGTACTCTAGACGA+AGG | 0.706505 | 3.4:+59682769 | MS.gene008695:CDS |
TTATTGTCCTCAAGCCACTG+TGG | 0.731552 | 3.4:+59676630 | MS.gene008695:CDS |
TGGGAAATTGACATTCACCA+GGG | 0.734667 | 3.4:+59676355 | MS.gene008695:CDS |
AGCCAAAGCAAATTCAACGG+GGG | 0.735187 | 3.4:+59677701 | MS.gene008695:CDS |
TAGCCAAAGCAAATTCAACG+GGG | 0.739394 | 3.4:+59677700 | MS.gene008695:CDS |
GGTCCATGTATCTACCACAG+TGG | 0.749610 | 3.4:-59681193 | None:intergenic |
GAAATTGACATTCACCAGGG+TGG | 0.761755 | 3.4:+59676358 | MS.gene008695:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 59674955 | 59682818 | 59674955 | ID=MS.gene008695 |
chr3.4 | mRNA | 59674955 | 59682818 | 59674955 | ID=MS.gene008695.t1;Parent=MS.gene008695 |
chr3.4 | exon | 59674955 | 59675042 | 59674955 | ID=MS.gene008695.t1.exon1;Parent=MS.gene008695.t1 |
chr3.4 | CDS | 59674955 | 59675042 | 59674955 | ID=cds.MS.gene008695.t1;Parent=MS.gene008695.t1 |
chr3.4 | exon | 59675435 | 59677542 | 59675435 | ID=MS.gene008695.t1.exon2;Parent=MS.gene008695.t1 |
chr3.4 | CDS | 59675435 | 59677542 | 59675435 | ID=cds.MS.gene008695.t1;Parent=MS.gene008695.t1 |
chr3.4 | exon | 59677650 | 59677770 | 59677650 | ID=MS.gene008695.t1.exon3;Parent=MS.gene008695.t1 |
chr3.4 | CDS | 59677650 | 59677770 | 59677650 | ID=cds.MS.gene008695.t1;Parent=MS.gene008695.t1 |
chr3.4 | exon | 59677928 | 59678013 | 59677928 | ID=MS.gene008695.t1.exon4;Parent=MS.gene008695.t1 |
chr3.4 | CDS | 59677928 | 59678013 | 59677928 | ID=cds.MS.gene008695.t1;Parent=MS.gene008695.t1 |
chr3.4 | exon | 59678206 | 59678450 | 59678206 | ID=MS.gene008695.t1.exon5;Parent=MS.gene008695.t1 |
chr3.4 | CDS | 59678206 | 59678450 | 59678206 | ID=cds.MS.gene008695.t1;Parent=MS.gene008695.t1 |
chr3.4 | exon | 59680415 | 59680501 | 59680415 | ID=MS.gene008695.t1.exon6;Parent=MS.gene008695.t1 |
chr3.4 | CDS | 59680415 | 59680501 | 59680415 | ID=cds.MS.gene008695.t1;Parent=MS.gene008695.t1 |
chr3.4 | exon | 59680626 | 59680725 | 59680626 | ID=MS.gene008695.t1.exon7;Parent=MS.gene008695.t1 |
chr3.4 | CDS | 59680626 | 59680725 | 59680626 | ID=cds.MS.gene008695.t1;Parent=MS.gene008695.t1 |
chr3.4 | exon | 59681147 | 59681354 | 59681147 | ID=MS.gene008695.t1.exon8;Parent=MS.gene008695.t1 |
chr3.4 | CDS | 59681147 | 59681354 | 59681147 | ID=cds.MS.gene008695.t1;Parent=MS.gene008695.t1 |
chr3.4 | exon | 59681439 | 59681562 | 59681439 | ID=MS.gene008695.t1.exon9;Parent=MS.gene008695.t1 |
chr3.4 | CDS | 59681439 | 59681562 | 59681439 | ID=cds.MS.gene008695.t1;Parent=MS.gene008695.t1 |
chr3.4 | exon | 59682348 | 59682405 | 59682348 | ID=MS.gene008695.t1.exon10;Parent=MS.gene008695.t1 |
chr3.4 | CDS | 59682348 | 59682405 | 59682348 | ID=cds.MS.gene008695.t1;Parent=MS.gene008695.t1 |
chr3.4 | exon | 59682666 | 59682818 | 59682666 | ID=MS.gene008695.t1.exon11;Parent=MS.gene008695.t1 |
chr3.4 | CDS | 59682666 | 59682818 | 59682666 | ID=cds.MS.gene008695.t1;Parent=MS.gene008695.t1 |
Gene Sequence |
Protein sequence |