Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008710.t1 | XP_003608130.2 | 92.6 | 272 | 16 | 1 | 1 | 268 | 1 | 272 | 4.40E-132 | 480.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008710.t1 | Q9S7Y1 | 38.8 | 178 | 106 | 3 | 57 | 233 | 160 | 335 | 3.4e-24 | 113.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008710.t1 | G7JPQ2 | 92.6 | 272 | 16 | 1 | 1 | 268 | 1 | 272 | 3.2e-132 | 480.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene008710.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008710.t1 | MTR_4g087920 | 92.278 | 259 | 16 | 1 | 1 | 255 | 1 | 259 | 5.76e-166 | 460 |
| MS.gene008710.t1 | MTR_2g015890 | 55.118 | 254 | 102 | 4 | 19 | 268 | 11 | 256 | 5.60e-83 | 249 |
| MS.gene008710.t1 | MTR_2g015890 | 47.244 | 254 | 82 | 5 | 19 | 268 | 11 | 216 | 1.63e-59 | 188 |
| MS.gene008710.t1 | MTR_2g015890 | 58.182 | 165 | 62 | 2 | 104 | 268 | 1 | 158 | 5.80e-59 | 185 |
| MS.gene008710.t1 | MTR_2g091190 | 46.190 | 210 | 108 | 4 | 30 | 238 | 21 | 226 | 1.34e-46 | 156 |
| MS.gene008710.t1 | MTR_4g079760 | 38.610 | 259 | 150 | 7 | 1 | 258 | 1 | 251 | 1.22e-40 | 141 |
| MS.gene008710.t1 | MTR_2g015890 | 46.061 | 165 | 42 | 3 | 104 | 268 | 1 | 118 | 1.53e-35 | 124 |
| MS.gene008710.t1 | MTR_3g070970 | 34.673 | 199 | 110 | 7 | 65 | 253 | 67 | 255 | 1.03e-28 | 110 |
| MS.gene008710.t1 | MTR_1g093750 | 41.667 | 180 | 94 | 5 | 57 | 232 | 144 | 316 | 3.19e-25 | 102 |
| MS.gene008710.t1 | MTR_5g032375 | 31.737 | 167 | 97 | 4 | 69 | 223 | 43 | 204 | 2.02e-15 | 73.6 |
| MS.gene008710.t1 | MTR_5g066080 | 33.000 | 200 | 91 | 4 | 64 | 230 | 30 | 219 | 1.72e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008710.t1 | AT3G56770 | 39.205 | 176 | 98 | 5 | 63 | 236 | 37 | 205 | 6.27e-30 | 112 |
| MS.gene008710.t1 | AT2G40200 | 41.667 | 132 | 73 | 2 | 73 | 201 | 65 | 195 | 2.55e-27 | 106 |
| MS.gene008710.t1 | AT1G68810 | 34.884 | 258 | 152 | 8 | 5 | 251 | 98 | 350 | 3.16e-24 | 100 |
| MS.gene008710.t1 | AT2G41130 | 38.068 | 176 | 101 | 4 | 63 | 236 | 59 | 228 | 5.00e-24 | 97.8 |
| MS.gene008710.t1 | AT3G25710 | 32.642 | 193 | 110 | 4 | 27 | 202 | 72 | 261 | 1.15e-20 | 90.1 |
Find 53 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATTCTTCTCCTCTTATT+TGG | 0.100613 | 4.4:+25139436 | None:intergenic |
| ACCACCACATTCATTGGTTT+TGG | 0.275049 | 4.4:-25142279 | MS.gene008710:CDS |
| GAACCATATGATACTAAATT+AGG | 0.319188 | 4.4:-25139742 | MS.gene008710:CDS |
| GTCATCACCACCACATTCAT+TGG | 0.344688 | 4.4:-25142285 | MS.gene008710:CDS |
| AGAAGAAGGGAGAGAATAAA+TGG | 0.348920 | 4.4:-25142143 | MS.gene008710:CDS |
| TATGATACTAAATTAGGATA+TGG | 0.351083 | 4.4:-25139736 | MS.gene008710:CDS |
| AATCAAACTTTGGATAACTT+TGG | 0.378387 | 4.4:-25142323 | MS.gene008710:CDS |
| TTCACTTCATCAACTTCTGT+TGG | 0.395317 | 4.4:+25139769 | None:intergenic |
| TATCCTAATTTAGTATCATA+TGG | 0.402521 | 4.4:+25139739 | None:intergenic |
| TTGAGGTCACATAGTATCTC+AGG | 0.408328 | 4.4:+25139673 | None:intergenic |
| GAACTTCATATCCAAATAAG+AGG | 0.441039 | 4.4:-25139447 | MS.gene008710:CDS |
| GGGAAGCAGAGAGGAGAAGA+AGG | 0.448212 | 4.4:-25142157 | MS.gene008710:CDS |
| TTCTCCTCTCTGCTTCCCTA+TGG | 0.451668 | 4.4:+25142162 | None:intergenic |
| TTGTGTTTACATGTTGTAAA+GGG | 0.470424 | 4.4:-25139573 | MS.gene008710:CDS |
| ACTGGATTCTGTGCTGGAAA+AGG | 0.471850 | 4.4:-25139497 | MS.gene008710:CDS |
| CAAGGCACTGGATTCTGTGC+TGG | 0.480944 | 4.4:-25139503 | MS.gene008710:CDS |
| TAGCTTCTTTGAAGAACCAT+AGG | 0.484232 | 4.4:-25142178 | MS.gene008710:CDS |
| GAGTTTGTTCAATCAAACTT+TGG | 0.484332 | 4.4:-25142333 | MS.gene008710:CDS |
| GGAAGCAGAGAGGAGAAGAA+GGG | 0.491306 | 4.4:-25142156 | MS.gene008710:CDS |
| GGAAAAGGCTTCTAACTCAA+TGG | 0.501654 | 4.4:-25139482 | MS.gene008710:CDS |
| TGTAGCTTCCACTCATCAAA+AGG | 0.507874 | 4.4:-25142096 | MS.gene008710:intron |
| TTTGTGTTTACATGTTGTAA+AGG | 0.510071 | 4.4:-25139574 | MS.gene008710:CDS |
| AAATGTCAACATTGGAAAGC+AGG | 0.511259 | 4.4:-25139609 | MS.gene008710:CDS |
| CATGCATCTTGTTCATGCTA+AGG | 0.515195 | 4.4:-25139382 | None:intergenic |
| GAATGAGAAGGAAAAGGTGG+TGG | 0.516295 | 4.4:-25142255 | MS.gene008710:CDS |
| GATAACTTTGGAGCTTCCAA+TGG | 0.517984 | 4.4:-25142311 | MS.gene008710:CDS |
| AAATGTTGTTCACAAGGCAC+TGG | 0.530660 | 4.4:-25139515 | MS.gene008710:CDS |
| GATGATGTTTCTGAGGTGAA+AGG | 0.532394 | 4.4:-25142203 | MS.gene008710:CDS |
| TTTGGAGAATGAGAAGGAAA+AGG | 0.540805 | 4.4:-25142261 | MS.gene008710:CDS |
| GAAGGCAGAAATGTCAACAT+TGG | 0.560990 | 4.4:-25139617 | MS.gene008710:CDS |
| ATGCATCTTGTTCATGCTAA+GGG | 0.564588 | 4.4:-25139381 | None:intergenic |
| GAGAGAATAAATGGTCACCT+TGG | 0.565872 | 4.4:-25142134 | MS.gene008710:CDS |
| GGAGTGCCCTGTTACTGAAA+AGG | 0.568614 | 4.4:-25142234 | MS.gene008710:CDS |
| GGAATTAAAGAAGAATGCAA+TGG | 0.577626 | 4.4:-25139815 | MS.gene008710:CDS |
| AGCTTCTTTGAAGAACCATA+GGG | 0.592888 | 4.4:-25142177 | MS.gene008710:CDS |
| AGATGCATGGCTGCATGAAG+AGG | 0.593504 | 4.4:+25139396 | None:intergenic |
| AATCACTTCAGCAAGTATTG+TGG | 0.602708 | 4.4:+25139849 | None:intergenic |
| GGAGAATGAGAAGGAAAAGG+TGG | 0.603497 | 4.4:-25142258 | MS.gene008710:CDS |
| TGCCCTGTTACTGAAAAGGT+TGG | 0.605529 | 4.4:-25142230 | MS.gene008710:CDS |
| TATTGCAAATGTTGTTCACA+AGG | 0.609473 | 4.4:-25139521 | MS.gene008710:CDS |
| CAAGACCACGTAATGTTCCA+AGG | 0.609560 | 4.4:+25142117 | None:intergenic |
| TGAAGTGATTAGTCAAGTGA+AGG | 0.620505 | 4.4:-25139836 | MS.gene008710:CDS |
| TTCTCCAAAACCAATGAATG+TGG | 0.622319 | 4.4:+25142275 | None:intergenic |
| TGGTGGTGATGACAATCCAT+TGG | 0.624935 | 4.4:+25142295 | None:intergenic |
| AGGTTGGTAATCACAGCAGA+TGG | 0.628119 | 4.4:+25139693 | None:intergenic |
| CTTAGCATGAACAAGATGCA+TGG | 0.629347 | 4.4:+25139383 | None:intergenic |
| ACTTCAACTTCAACTAGTGA+AGG | 0.632952 | 4.4:-25139635 | MS.gene008710:CDS |
| AATGCAATGGAAGCAAGCAA+AGG | 0.642370 | 4.4:-25139802 | MS.gene008710:CDS |
| TGGTAAAGATGATGTTTCTG+AGG | 0.646156 | 4.4:-25142210 | MS.gene008710:CDS |
| GGTCACATAGTATCTCAGGT+TGG | 0.666963 | 4.4:+25139677 | None:intergenic |
| TCCAAAACCAATGAATGTGG+TGG | 0.695002 | 4.4:+25142278 | None:intergenic |
| GGTCACCTTGGAACATTACG+TGG | 0.700048 | 4.4:-25142122 | MS.gene008710:CDS |
| AGAACCATAGGGAAGCAGAG+AGG | 0.739044 | 4.4:-25142166 | MS.gene008710:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAAAATGTATAAATAA+AGG | - | chr4.4:25140053-25140072 | MS.gene008710:intron | 10.0% |
| !! | AAGAAAAATGTATAAATAAA+GGG | - | chr4.4:25140054-25140073 | MS.gene008710:intron | 10.0% |
| !! | CATTATTGTAATTAAATTAA+GGG | - | chr4.4:25140812-25140831 | MS.gene008710:intron | 10.0% |
| !! | GATGATTATAATATTAATAT+AGG | + | chr4.4:25141485-25141504 | None:intergenic | 10.0% |
| !!! | AATTATATATTTTTTTTGGA+AGG | + | chr4.4:25141818-25141837 | None:intergenic | 10.0% |
| !!! | ATTATATATTTTTTTTGGAA+GGG | + | chr4.4:25141817-25141836 | None:intergenic | 10.0% |
| !!! | TAAAGTATTTTTTATTCTAA+AGG | + | chr4.4:25140630-25140649 | None:intergenic | 10.0% |
| !!! | TGATAATTTTAAAAGAAAAA+TGG | - | chr4.4:25140735-25140754 | MS.gene008710:intron | 10.0% |
| !!! | TTATTTATACATTTTTCTTT+GGG | + | chr4.4:25140053-25140072 | None:intergenic | 10.0% |
| !!! | TTTATTTATACATTTTTCTT+TGG | + | chr4.4:25140054-25140073 | None:intergenic | 10.0% |
| !! | AAAAATAAACACAAACTAAA+AGG | + | chr4.4:25140465-25140484 | None:intergenic | 15.0% |
| !! | AAAGTAGAATATATTGTATT+GGG | - | chr4.4:25140078-25140097 | MS.gene008710:intron | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | - | chr4.4:25140055-25140074 | MS.gene008710:intron | 15.0% |
| !! | ATTATTATTATCCAAATCTA+TGG | - | chr4.4:25139912-25139931 | MS.gene008710:intron | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | - | chr4.4:25140119-25140138 | MS.gene008710:intron | 15.0% |
| !! | GCATTATTGTAATTAAATTA+AGG | - | chr4.4:25140811-25140830 | MS.gene008710:intron | 15.0% |
| !! | TAAATAAGCATTAAGAAATA+AGG | + | chr4.4:25140684-25140703 | None:intergenic | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | - | chr4.4:25140118-25140137 | MS.gene008710:intron | 15.0% |
| !! | TTATTATTATCCAAATCTAT+GGG | - | chr4.4:25139913-25139932 | MS.gene008710:intron | 15.0% |
| !!! | TCATGATATTAGTATTTTTA+TGG | - | chr4.4:25140969-25140988 | MS.gene008710:intron | 15.0% |
| !!! | TTCTAATTGTAAAATTTGTT+TGG | - | chr4.4:25139753-25139772 | MS.gene008710:CDS | 15.0% |
| !! | AGATAACACATATATGATAT+CGG | - | chr4.4:25140528-25140547 | MS.gene008710:intron | 20.0% |
| !! | ATTCAATATCAAAATTCTGA+TGG | + | chr4.4:25140413-25140432 | None:intergenic | 20.0% |
| !! | ATTTAATGGAAAGTTGAAAT+TGG | - | chr4.4:25140241-25140260 | MS.gene008710:intron | 20.0% |
| !! | GAAAGTAGAATATATTGTAT+TGG | - | chr4.4:25140077-25140096 | MS.gene008710:intron | 20.0% |
| !! | GACTAAATTAAGTTCAAATA+TGG | - | chr4.4:25141600-25141619 | MS.gene008710:intron | 20.0% |
| !! | TATCCTAATTTAGTATCATA+TGG | + | chr4.4:25142031-25142050 | None:intergenic | 20.0% |
| !! | TATGATACTAAATTAGGATA+TGG | - | chr4.4:25142031-25142050 | MS.gene008710:intron | 20.0% |
| !! | TTTAATGGAAAGTTGAAATT+GGG | - | chr4.4:25140242-25140261 | MS.gene008710:intron | 20.0% |
| !!! | CAAATATAGTTTTGGTTTTT+AGG | - | chr4.4:25140272-25140291 | MS.gene008710:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+AGG | - | chr4.4:25140188-25140207 | MS.gene008710:intron | 20.0% |
| !!! | TTGTTGTCTTATTTCTATAA+TGG | - | chr4.4:25141349-25141368 | MS.gene008710:intron | 20.0% |
| !!! | TTTTTTACGGTAATAATACA+TGG | - | chr4.4:25141662-25141681 | MS.gene008710:intron | 20.0% |
| ! | AACAAATAAAGATAAGATGG+CGG | + | chr4.4:25141334-25141353 | None:intergenic | 25.0% |
| ! | AAGAAATAAGGAAATGCTAA+GGG | + | chr4.4:25140672-25140691 | None:intergenic | 25.0% |
| ! | AATCAAACTTTGGATAACTT+TGG | - | chr4.4:25139444-25139463 | MS.gene008710:CDS | 25.0% |
| ! | ACTTCAAATTTCAAAACTTG+TGG | + | chr4.4:25140791-25140810 | None:intergenic | 25.0% |
| ! | AGGTGAGAATCAAATATAAT+TGG | - | chr4.4:25140344-25140363 | MS.gene008710:intron | 25.0% |
| ! | ATATTGCATAAAACATACGT+AGG | - | chr4.4:25139816-25139835 | MS.gene008710:CDS | 25.0% |
| ! | ATTCAAGACAATGTTATCAA+AGG | - | chr4.4:25141563-25141582 | MS.gene008710:intron | 25.0% |
| ! | GAACCATATGATACTAAATT+AGG | - | chr4.4:25142025-25142044 | MS.gene008710:intron | 25.0% |
| ! | GACAACAAATAAAGATAAGA+TGG | + | chr4.4:25141337-25141356 | None:intergenic | 25.0% |
| ! | GGTGAGAATCAAATATAATT+GGG | - | chr4.4:25140345-25140364 | MS.gene008710:intron | 25.0% |
| ! | TAAGAAATAAGGAAATGCTA+AGG | + | chr4.4:25140673-25140692 | None:intergenic | 25.0% |
| ! | TAATAAATCAACTCAGTTGT+TGG | - | chr4.4:25141517-25141536 | MS.gene008710:intron | 25.0% |
| ! | TAATGAATGATTTCCAGTTT+GGG | + | chr4.4:25141011-25141030 | None:intergenic | 25.0% |
| ! | TTAATGAATGATTTCCAGTT+TGG | + | chr4.4:25141012-25141031 | None:intergenic | 25.0% |
| ! | TTGTGTTTACATGTTGTAAA+GGG | - | chr4.4:25142194-25142213 | MS.gene008710:CDS | 25.0% |
| ! | TTTGTGTTTACATGTTGTAA+AGG | - | chr4.4:25142193-25142212 | MS.gene008710:CDS | 25.0% |
| !! | AGTTTAAGTTTGAACAAAGA+TGG | - | chr4.4:25140301-25140320 | MS.gene008710:intron | 25.0% |
| !! | ATATACTTTTGTTCATGTCA+TGG | + | chr4.4:25141087-25141106 | None:intergenic | 25.0% |
| !! | ATGGTTCATTACATTTTAGA+TGG | - | chr4.4:25141889-25141908 | MS.gene008710:intron | 25.0% |
| !! | TATTTCTATAATGGTGATGT+GGG | - | chr4.4:25141358-25141377 | MS.gene008710:intron | 25.0% |
| !! | TTGAAATGACTCAGTTATTT+TGG | - | chr4.4:25140165-25140184 | MS.gene008710:intron | 25.0% |
| !! | TTTTATGGTTTCTTCTTCTA+TGG | - | chr4.4:25140984-25141003 | MS.gene008710:intron | 25.0% |
| !!! | ACAACTGAGTTGATTTATTA+AGG | + | chr4.4:25141517-25141536 | None:intergenic | 25.0% |
| !!! | ATATTAATATAGGAGTACTG+AGG | + | chr4.4:25141475-25141494 | None:intergenic | 25.0% |
| !!! | ATGTGTTGAATTTGATTTTG+TGG | - | chr4.4:25141862-25141881 | MS.gene008710:intron | 25.0% |
| !!! | TGAAATGACTCAGTTATTTT+GGG | - | chr4.4:25140166-25140185 | MS.gene008710:intron | 25.0% |
| !!! | TGTGTTGAATTTGATTTTGT+GGG | - | chr4.4:25141863-25141882 | MS.gene008710:intron | 25.0% |
| !!! | TTATACATTTTTCTTTGGGA+CGG | + | chr4.4:25140049-25140068 | None:intergenic | 25.0% |
| !!! | TTATTTCTATAATGGTGATG+TGG | - | chr4.4:25141357-25141376 | MS.gene008710:intron | 25.0% |
| AAATATAATTGGGTAGCTGA+GGG | - | chr4.4:25140355-25140374 | MS.gene008710:intron | 30.0% | |
| ACACTTCACAATCAAATTGA+AGG | - | chr4.4:25139851-25139870 | MS.gene008710:CDS | 30.0% | |
| ACTAATCACGTTCAAATATG+TGG | - | chr4.4:25141718-25141737 | MS.gene008710:intron | 30.0% | |
| AGAAAATAGGTCAGATATTC+CGG | - | chr4.4:25140201-25140220 | MS.gene008710:intron | 30.0% | |
| CAAAAAGAACAATGAAAGCA+AGG | + | chr4.4:25139713-25139732 | None:intergenic | 30.0% | |
| GAACTTCATATCCAAATAAG+AGG | - | chr4.4:25142320-25142339 | MS.gene008710:CDS | 30.0% | |
| GGAATTAAAGAAGAATGCAA+TGG | - | chr4.4:25141952-25141971 | MS.gene008710:intron | 30.0% | |
| GTGCAATTATATATCCCATA+TGG | - | chr4.4:25140932-25140951 | MS.gene008710:intron | 30.0% | |
| TATTGCAAATGTTGTTCACA+AGG | - | chr4.4:25142246-25142265 | MS.gene008710:CDS | 30.0% | |
| TCAATTTGATTGTGAAGTGT+CGG | + | chr4.4:25139851-25139870 | None:intergenic | 30.0% | |
| TCTATAAAATGCATGTGCTA+TGG | - | chr4.4:25139999-25140018 | MS.gene008710:intron | 30.0% | |
| TGATTTATTAAGGTGGATGA+AGG | + | chr4.4:25141507-25141526 | None:intergenic | 30.0% | |
| TTTGGAAGGGAAAAAATTGT+TGG | + | chr4.4:25141804-25141823 | None:intergenic | 30.0% | |
| ! | AAATTATCAAAGAGCGTGAA+AGG | + | chr4.4:25140724-25140743 | None:intergenic | 30.0% |
| ! | AATTATCAAAGAGCGTGAAA+GGG | + | chr4.4:25140723-25140742 | None:intergenic | 30.0% |
| ! | ATTTCTATAATGGTGATGTG+GGG | - | chr4.4:25141359-25141378 | MS.gene008710:intron | 30.0% |
| ! | GAGTTTGTTCAATCAAACTT+TGG | - | chr4.4:25139434-25139453 | MS.gene008710:CDS | 30.0% |
| ! | GTGAGGAACAAATATAGTTT+TGG | - | chr4.4:25140264-25140283 | MS.gene008710:intron | 30.0% |
| ! | TACTGATTGCTAAAGTCAAA+TGG | - | chr4.4:25140885-25140904 | MS.gene008710:intron | 30.0% |
| !! | AATTTGATTTTGTGGGTCAA+TGG | - | chr4.4:25141870-25141889 | MS.gene008710:intron | 30.0% |
| !! | ACTGAGTTGATTTATTAAGG+TGG | + | chr4.4:25141514-25141533 | None:intergenic | 30.0% |
| !! | CACTAATGTCAATTTTGACA+AGG | - | chr4.4:25141118-25141137 | MS.gene008710:intron | 30.0% |
| !!! | AGGGAATAGTTTTAATGTTG+AGG | - | chr4.4:25142213-25142232 | MS.gene008710:CDS | 30.0% |
| !!! | ATTGCTTTCAAGTTTTGTTG+TGG | - | chr4.4:25141221-25141240 | MS.gene008710:intron | 30.0% |
| !!! | GACAAGGTATTTTAACTTGA+TGG | - | chr4.4:25141134-25141153 | MS.gene008710:intron | 30.0% |
| !!! | GTGCATTAATTGCTTTTTTG+AGG | + | chr4.4:25142114-25142133 | None:intergenic | 30.0% |
| AAATGTCAACATTGGAAAGC+AGG | - | chr4.4:25142158-25142177 | MS.gene008710:CDS | 35.0% | |
| AAGAACAATGAAAGCAAGGA+AGG | + | chr4.4:25139709-25139728 | None:intergenic | 35.0% | |
| ACGATATTGACCCATAGATT+TGG | + | chr4.4:25139926-25139945 | None:intergenic | 35.0% | |
| ACTTCAACTTCAACTAGTGA+AGG | - | chr4.4:25142132-25142151 | MS.gene008710:CDS | 35.0% | |
| AGAAGAAGGGAGAGAATAAA+TGG | - | chr4.4:25139624-25139643 | MS.gene008710:CDS | 35.0% | |
| AGATGGCAATACAAGCTTTA+AGG | - | chr4.4:25140318-25140337 | MS.gene008710:intron | 35.0% | |
| ATGTCATGGAGACTTAATCA+AGG | + | chr4.4:25141073-25141092 | None:intergenic | 35.0% | |
| CAAATATAATTGGGTAGCTG+AGG | - | chr4.4:25140354-25140373 | MS.gene008710:intron | 35.0% | |
| CACATTCTTCTCCTCTTATT+TGG | + | chr4.4:25142334-25142353 | None:intergenic | 35.0% | |
| CTTCACAATCAAATTGAAGG+TGG | - | chr4.4:25139854-25139873 | MS.gene008710:CDS | 35.0% | |
| GAAAATAGGTCAGATATTCC+GGG | - | chr4.4:25140202-25140221 | MS.gene008710:intron | 35.0% | |
| GCATCATGGTTGTCATTATA+TGG | - | chr4.4:25140844-25140863 | MS.gene008710:intron | 35.0% | |
| GGAGGGAGTAATAGATTTAA+TGG | - | chr4.4:25140227-25140246 | MS.gene008710:intron | 35.0% | |
| TCTTTACAAGTCTCGAGAAT+TGG | + | chr4.4:25140589-25140608 | None:intergenic | 35.0% | |
| TTCACTTCATCAACTTCTGT+TGG | + | chr4.4:25142001-25142020 | None:intergenic | 35.0% | |
| TTCTCCAAAACCAATGAATG+TGG | + | chr4.4:25139495-25139514 | None:intergenic | 35.0% | |
| TTTGGAGAATGAGAAGGAAA+AGG | - | chr4.4:25139506-25139525 | MS.gene008710:CDS | 35.0% | |
| ! | AACTCAGTTTGTTTGCCATA+TGG | + | chr4.4:25140950-25140969 | None:intergenic | 35.0% |
| ! | AAGACATACCTTTTGATGAG+TGG | + | chr4.4:25139682-25139701 | None:intergenic | 35.0% |
| ! | AATCACTTCAGCAAGTATTG+TGG | + | chr4.4:25141921-25141940 | None:intergenic | 35.0% |
| ! | ACTCAGTTTGTTTGCCATAT+GGG | + | chr4.4:25140949-25140968 | None:intergenic | 35.0% |
| ! | AGCTTCTTTGAAGAACCATA+GGG | - | chr4.4:25139590-25139609 | MS.gene008710:CDS | 35.0% |
| ! | TACCAACCTTTTCAGTAACA+GGG | + | chr4.4:25139542-25139561 | None:intergenic | 35.0% |
| ! | TAGCTTCTTTGAAGAACCAT+AGG | - | chr4.4:25139589-25139608 | MS.gene008710:CDS | 35.0% |
| ! | TGAAGTGATTAGTCAAGTGA+AGG | - | chr4.4:25141931-25141950 | MS.gene008710:intron | 35.0% |
| ! | TGGTAAAGATGATGTTTCTG+AGG | - | chr4.4:25139557-25139576 | MS.gene008710:CDS | 35.0% |
| ! | TGGTAACCATGTCTCTTTTA+GGG | - | chr4.4:25139949-25139968 | MS.gene008710:intron | 35.0% |
| ! | TTACCAACCTTTTCAGTAAC+AGG | + | chr4.4:25139543-25139562 | None:intergenic | 35.0% |
| !!! | ATTGGTTTTGGAGAATGAGA+AGG | - | chr4.4:25139500-25139519 | MS.gene008710:CDS | 35.0% |
| AAATGTTGTTCACAAGGCAC+TGG | - | chr4.4:25142252-25142271 | MS.gene008710:CDS | 40.0% | |
| AAGGGATTCTGATTGCATCA+TGG | - | chr4.4:25140830-25140849 | MS.gene008710:intron | 40.0% | |
| AATGCAATGGAAGCAAGCAA+AGG | - | chr4.4:25141965-25141984 | MS.gene008710:intron | 40.0% | |
| ATATCATCCAGAAGAACACC+TGG | + | chr4.4:25141252-25141271 | None:intergenic | 40.0% | |
| ATCAAGCCCTAAAAGAGACA+TGG | + | chr4.4:25139958-25139977 | None:intergenic | 40.0% | |
| ATGTGCTATGGAGATGAGAA+AGG | - | chr4.4:25140011-25140030 | MS.gene008710:intron | 40.0% | |
| GAAGGCAGAAATGTCAACAT+TGG | - | chr4.4:25142150-25142169 | MS.gene008710:CDS | 40.0% | |
| GAGAGAATAAATGGTCACCT+TGG | - | chr4.4:25139633-25139652 | MS.gene008710:CDS | 40.0% | |
| GGAAAAGGCTTCTAACTCAA+TGG | - | chr4.4:25142285-25142304 | MS.gene008710:CDS | 40.0% | |
| GGAAAGAGGAAGACAACAAA+TGG | + | chr4.4:25141454-25141473 | None:intergenic | 40.0% | |
| TCCAAAACCAATGAATGTGG+TGG | + | chr4.4:25139492-25139511 | None:intergenic | 40.0% | |
| TGGAAAGTTGAAATTGGGTG+AGG | - | chr4.4:25140247-25140266 | MS.gene008710:intron | 40.0% | |
| TGTAGCTTCCACTCATCAAA+AGG | - | chr4.4:25139671-25139690 | MS.gene008710:CDS | 40.0% | |
| TGTGCTATGGAGATGAGAAA+GGG | - | chr4.4:25140012-25140031 | MS.gene008710:intron | 40.0% | |
| TTGAGGTCACATAGTATCTC+AGG | + | chr4.4:25142097-25142116 | None:intergenic | 40.0% | |
| ! | CTGGTAACCATGTCTCTTTT+AGG | - | chr4.4:25139948-25139967 | MS.gene008710:intron | 40.0% |
| ! | GTGATTAGTCATGTGTCACA+CGG | + | chr4.4:25141707-25141726 | None:intergenic | 40.0% |
| ! | TGATTAGTCATGTGTCACAC+GGG | + | chr4.4:25141706-25141725 | None:intergenic | 40.0% |
| !! | CAATACAAGCTTTAAGGCAG+AGG | - | chr4.4:25140324-25140343 | MS.gene008710:intron | 40.0% |
| !! | GATAACTTTGGAGCTTCCAA+TGG | - | chr4.4:25139456-25139475 | MS.gene008710:CDS | 40.0% |
| !! | GATGATGTTTCTGAGGTGAA+AGG | - | chr4.4:25139564-25139583 | MS.gene008710:CDS | 40.0% |
| !! | TATAGGAGTACTGAGGAAAG+AGG | + | chr4.4:25141468-25141487 | None:intergenic | 40.0% |
| !!! | ACATTTTTCTTTGGGACGGA+GGG | + | chr4.4:25140045-25140064 | None:intergenic | 40.0% |
| !!! | ACCACCACATTCATTGGTTT+TGG | - | chr4.4:25139488-25139507 | MS.gene008710:CDS | 40.0% |
| !!! | TACATTTTTCTTTGGGACGG+AGG | + | chr4.4:25140046-25140065 | None:intergenic | 40.0% |
| ACTGGATTCTGTGCTGGAAA+AGG | - | chr4.4:25142270-25142289 | MS.gene008710:CDS | 45.0% | |
| ATAGGTCAGATATTCCGGGA+CGG | - | chr4.4:25140206-25140225 | MS.gene008710:intron | 45.0% | |
| CAAGACCACGTAATGTTCCA+AGG | + | chr4.4:25139653-25139672 | None:intergenic | 45.0% | |
| CTATGGGTCAATATCGTGTC+TGG | - | chr4.4:25139929-25139948 | MS.gene008710:intron | 45.0% | |
| CTTCTTCTATGGTCCCAAAC+TGG | - | chr4.4:25140995-25141014 | MS.gene008710:intron | 45.0% | |
| GAATGAGAAGGAAAAGGTGG+TGG | - | chr4.4:25139512-25139531 | MS.gene008710:CDS | 45.0% | |
| GGAGAATGAGAAGGAAAAGG+TGG | - | chr4.4:25139509-25139528 | MS.gene008710:CDS | 45.0% | |
| GGTCACATAGTATCTCAGGT+TGG | + | chr4.4:25142093-25142112 | None:intergenic | 45.0% | |
| GTCATCACCACCACATTCAT+TGG | - | chr4.4:25139482-25139501 | MS.gene008710:CDS | 45.0% | |
| TGCCCTGTTACTGAAAAGGT+TGG | - | chr4.4:25139537-25139556 | MS.gene008710:CDS | 45.0% | |
| ! | TGGTGGTGATGACAATCCAT+TGG | + | chr4.4:25139475-25139494 | None:intergenic | 45.0% |
| !! | AGGTTGGTAATCACAGCAGA+TGG | + | chr4.4:25142077-25142096 | None:intergenic | 45.0% |
| !!! | AGTTTTGTTGTGGACATGCC+AGG | - | chr4.4:25141231-25141250 | MS.gene008710:intron | 45.0% |
| !!! | AAATTTAATCATTTTTTTTA+CGG | - | chr4.4:25141649-25141668 | MS.gene008710:intron | 5.0% |
| !!! | AAGTAATTATATATTTTTTT+TGG | + | chr4.4:25141822-25141841 | None:intergenic | 5.0% |
| !!! | TAAAAAAAATGATTAAATTT+TGG | + | chr4.4:25141649-25141668 | None:intergenic | 5.0% |
| AGAACCATAGGGAAGCAGAG+AGG | - | chr4.4:25139601-25139620 | MS.gene008710:CDS | 50.0% | |
| AGATGCATGGCTGCATGAAG+AGG | + | chr4.4:25142374-25142393 | None:intergenic | 50.0% | |
| ATCTATTACTCCCTCCGTCC+CGG | + | chr4.4:25140223-25140242 | None:intergenic | 50.0% | |
| CACACGGGTGTACATAGAGT+GGG | + | chr4.4:25141691-25141710 | None:intergenic | 50.0% | |
| GGAAGCAGAGAGGAGAAGAA+GGG | - | chr4.4:25139611-25139630 | MS.gene008710:CDS | 50.0% | |
| GGTCACCTTGGAACATTACG+TGG | - | chr4.4:25139645-25139664 | MS.gene008710:CDS | 50.0% | |
| TCACACGGGTGTACATAGAG+TGG | + | chr4.4:25141692-25141711 | None:intergenic | 50.0% | |
| TTCTCCTCTCTGCTTCCCTA+TGG | + | chr4.4:25139608-25139627 | None:intergenic | 50.0% | |
| ! | GGAGTGCCCTGTTACTGAAA+AGG | - | chr4.4:25139533-25139552 | MS.gene008710:CDS | 50.0% |
| GGACATGCCAGGTGTTCTTC+TGG | - | chr4.4:25141242-25141261 | MS.gene008710:intron | 55.0% | |
| GGGAAGCAGAGAGGAGAAGA+AGG | - | chr4.4:25139610-25139629 | MS.gene008710:CDS | 55.0% | |
| GTCAGATATTCCGGGACGGA+GGG | - | chr4.4:25140210-25140229 | MS.gene008710:intron | 55.0% | |
| !! | CAAGGCACTGGATTCTGTGC+TGG | - | chr4.4:25142264-25142283 | MS.gene008710:CDS | 55.0% |
| GGTCAGATATTCCGGGACGG+AGG | - | chr4.4:25140209-25140228 | MS.gene008710:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 25139384 | 25142405 | 25139384 | ID=MS.gene008710 |
| chr4.4 | mRNA | 25139384 | 25142405 | 25139384 | ID=MS.gene008710.t1;Parent=MS.gene008710 |
| chr4.4 | exon | 25142097 | 25142405 | 25142097 | ID=MS.gene008710.t1.exon1;Parent=MS.gene008710.t1 |
| chr4.4 | CDS | 25142097 | 25142405 | 25142097 | ID=cds.MS.gene008710.t1;Parent=MS.gene008710.t1 |
| chr4.4 | exon | 25139384 | 25139881 | 25139384 | ID=MS.gene008710.t1.exon2;Parent=MS.gene008710.t1 |
| chr4.4 | CDS | 25139384 | 25139881 | 25139384 | ID=cds.MS.gene008710.t1;Parent=MS.gene008710.t1 |
| Gene Sequence |
| Protein sequence |
