AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene008796

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene008796.t1 MTR_8g070075 89.136 764 77 1 1 764 1 758 0.0 1418
MS.gene008796.t1 MTR_8g070070 72.994 785 176 9 4 768 1 769 0.0 1120
MS.gene008796.t1 MTR_8g071030 63.052 793 217 8 6 768 3 749 0.0 968
MS.gene008796.t1 MTR_1g035420 67.360 481 153 3 288 767 181 658 0.0 687
MS.gene008796.t1 MTR_1g035400 60.042 473 186 3 288 759 98 568 0.0 594
MS.gene008796.t1 MTR_6g044690 53.039 543 220 13 228 756 43 564 0.0 545
MS.gene008796.t1 MTR_0376s0030 47.957 563 261 10 218 767 34 577 1.80e-175 516
MS.gene008796.t1 MTR_6g043960 48.851 522 218 11 244 756 1 482 4.22e-160 473
MS.gene008796.t1 MTR_2g054460 46.717 533 201 14 238 756 1 464 3.78e-142 426
MS.gene008796.t1 MTR_5g013420 41.037 463 250 8 296 754 615 1058 1.27e-108 357
MS.gene008796.t1 MTR_5g013420 41.037 463 250 8 296 754 615 1058 1.64e-108 356
MS.gene008796.t1 MTR_7g088370 41.401 471 240 13 296 756 236 680 3.35e-106 341
MS.gene008796.t1 MTR_4g010830 41.991 462 246 8 296 754 507 949 2.22e-105 345
MS.gene008796.t1 MTR_3g011440 40.421 475 253 13 296 755 174 633 1.46e-104 335
MS.gene008796.t1 MTR_8g042750 39.207 454 248 11 316 756 220 658 6.68e-97 316
MS.gene008796.t1 MTR_7g084090 37.882 491 267 16 289 755 251 727 2.02e-90 300
MS.gene008796.t1 MTR_4g010550 38.745 462 231 11 296 754 21 433 3.04e-90 291
MS.gene008796.t1 MTR_6g061270 38.750 480 263 16 296 755 196 664 1.97e-89 296
MS.gene008796.t1 MTR_6g061200 37.634 465 247 16 302 755 203 635 3.05e-83 278
MS.gene008796.t1 MTR_7g084090 40.541 370 198 13 289 645 251 611 1.12e-72 250
MS.gene008796.t1 MTR_7g445710 32.353 476 229 18 299 754 110 512 2.24e-54 197
MS.gene008796.t1 MTR_7g445530 32.143 476 230 18 299 754 110 512 3.15e-54 196
MS.gene008796.t1 MTR_1g048950 32.842 475 270 13 295 754 67 507 5.93e-52 190
MS.gene008796.t1 MTR_7g450730 30.462 476 218 15 293 754 98 474 1.20e-51 188
MS.gene008796.t1 MTR_7g052480 33.117 308 192 8 458 755 223 526 2.23e-43 166
MS.gene008796.t1 MTR_8g078505 27.915 283 157 9 503 754 249 515 2.64e-21 99.0
MS.gene008796.t1 MTR_7g445600 33.333 150 63 2 605 754 243 355 1.21e-20 94.7
MS.gene008796.t1 MTR_7g445600 41.085 129 62 5 299 427 106 220 1.50e-15 79.3
MS.gene008796.t1 MTR_6g044000 71.698 53 15 0 704 756 117 169 3.45e-20 89.0
MS.gene008796.t1 MTR_6g044000 38.400 125 72 2 244 368 1 120 7.10e-20 88.2
MS.gene008796.t1 MTR_1g069570 26.384 307 154 12 506 756 430 720 6.35e-20 95.5
MS.gene008796.t1 MTR_8g078490 30.688 189 111 4 571 754 1056 1229 1.72e-19 94.4
MS.gene008796.t1 MTR_5g018850 30.851 188 112 4 571 754 1310 1483 5.23e-19 93.2
MS.gene008796.t1 MTR_4g132610 29.730 185 116 4 572 754 851 1023 1.86e-18 90.9
MS.gene008796.t1 MTR_1g080340 25.407 307 158 11 506 756 269 560 3.03e-18 89.7
MS.gene008796.t1 MTR_5g098680 36.076 158 87 4 324 476 267 415 1.51e-16 84.3
MS.gene008796.t1 MTR_8g102580 35.443 158 88 4 324 476 261 409 7.34e-16 82.0
MS.gene008796.t1 MTR_3g114910 33.333 153 88 4 324 476 187 325 1.21e-12 70.9
MS.gene008796.t1 MTR_7g445810 35.088 171 85 8 293 455 114 266 2.18e-12 68.6
MS.gene008796.t1 MTR_1g098370 24.506 253 129 10 528 766 20 224 4.63e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene008796.t1 AT4G13460 62.900 469 167 5 301 767 186 649 0.0 625
MS.gene008796.t1 AT4G13460 62.900 469 167 5 301 767 186 649 0.0 625
MS.gene008796.t1 AT2G33290 59.544 482 185 5 287 767 178 650 0.0 616
MS.gene008796.t1 AT2G33290 59.544 482 185 5 287 767 178 650 0.0 616
MS.gene008796.t1 AT2G33290 59.544 482 185 5 287 767 178 650 0.0 616
MS.gene008796.t1 AT2G33290 59.544 482 185 5 287 767 178 650 0.0 616
MS.gene008796.t1 AT2G35160 39.738 458 232 10 301 754 310 727 7.28e-95 312
MS.gene008796.t1 AT2G35160 39.738 458 232 10 301 754 346 763 1.99e-94 312
MS.gene008796.t1 AT2G35160 39.738 458 232 10 301 754 346 763 1.99e-94 312
MS.gene008796.t1 AT2G35160 39.738 458 232 10 301 754 346 763 1.99e-94 312
MS.gene008796.t1 AT2G35160 39.738 458 232 10 301 754 346 763 1.99e-94 312
MS.gene008796.t1 AT5G04940 38.998 459 237 11 316 756 207 640 2.17e-94 308
MS.gene008796.t1 AT5G04940 38.998 459 237 11 316 756 207 640 2.17e-94 308
MS.gene008796.t1 AT2G22740 38.105 475 271 8 289 754 299 759 6.27e-94 310
MS.gene008796.t1 AT2G22740 38.105 475 271 8 289 754 299 759 6.27e-94 310
MS.gene008796.t1 AT1G73100 37.908 459 244 12 316 756 204 639 7.20e-94 307
MS.gene008796.t1 AT5G13960 37.174 460 259 14 316 755 11 460 1.91e-85 280
MS.gene008796.t1 AT5G13960 36.458 480 274 15 296 755 126 594 4.99e-85 282
MS.gene008796.t1 AT1G17770 33.478 460 266 15 316 756 223 661 2.87e-71 247
MS.gene008796.t1 AT2G24740 35.477 451 247 14 317 756 307 724 1.95e-67 238
MS.gene008796.t1 AT5G47150 43.827 162 82 4 315 476 172 324 1.54e-29 120
MS.gene008796.t1 AT5G47160 41.520 171 90 5 304 473 247 408 1.03e-25 110
MS.gene008796.t1 AT5G47160 41.520 171 90 5 304 473 247 408 1.03e-25 110
MS.gene008796.t1 AT5G47160 41.520 171 90 5 304 473 247 408 1.03e-25 110
MS.gene008796.t1 AT2G23740 27.703 296 167 11 503 766 1090 1370 7.67e-23 105
MS.gene008796.t1 AT2G23740 27.703 296 167 11 503 766 1090 1370 7.67e-23 105
MS.gene008796.t1 AT2G23740 27.703 296 167 11 503 766 1090 1370 7.67e-23 105
MS.gene008796.t1 AT2G23740 27.703 296 167 11 503 766 1083 1363 8.63e-23 105
MS.gene008796.t1 AT2G05900 37.640 178 103 6 361 538 26 195 3.22e-20 92.8
MS.gene008796.t1 AT2G23740 27.500 240 130 10 503 713 1090 1314 7.38e-17 85.9
MS.gene008796.t1 AT2G23740 27.500 240 130 10 503 713 1090 1314 7.38e-17 85.9
MS.gene008796.t1 AT3G03750 30.918 207 115 6 551 755 143 323 1.82e-16 82.4
MS.gene008796.t1 AT1G57820 35.849 159 87 5 324 476 277 426 4.61e-16 82.8
MS.gene008796.t1 AT1G57820 35.849 159 87 5 324 476 277 426 4.61e-16 82.8
MS.gene008796.t1 AT1G57820 35.256 156 89 5 324 476 277 423 4.43e-15 79.7
MS.gene008796.t1 AT1G04050 24.919 309 154 10 506 756 305 593 2.94e-14 77.0
MS.gene008796.t1 AT1G04050 25.243 309 153 10 506 756 409 697 2.98e-14 77.0
MS.gene008796.t1 AT1G04050 25.243 309 153 10 506 756 409 697 2.98e-14 77.0
MS.gene008796.t1 AT1G66040 33.333 159 91 4 324 476 262 411 7.86e-14 75.5
MS.gene008796.t1 AT1G66050 33.333 159 91 4 324 476 262 411 7.87e-14 75.5
MS.gene008796.t1 AT5G39550 34.591 159 89 5 324 476 262 411 1.15e-13 75.1
MS.gene008796.t1 AT4G08590 32.468 154 90 4 324 476 237 377 2.04e-12 70.5
MS.gene008796.t1 AT4G08590 31.818 154 92 4 324 476 237 378 1.03e-11 68.2
MS.gene008796.t1 AT4G08590 31.818 154 92 4 324 476 237 378 1.14e-11 68.2
MS.gene008796.t1 AT4G08590 32.692 156 88 5 324 476 237 378 1.93e-11 67.4

Find 216 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTACTAGTGTGATTGTTTC+AGG 0.175344 8.1:+34486884 MS.gene008796:CDS
GCTAGGAAGATTAAGAAAAT+TGG 0.178663 8.1:+34487250 MS.gene008796:CDS
ACTAAATCATAACCTTAATA+TGG 0.228635 8.1:+34486217 MS.gene008796:CDS
TCATCAAAATGGTTAGGTTT+AGG 0.243004 8.1:-34485945 None:intergenic
CATCAAAATGGTTAGGTTTA+GGG 0.248916 8.1:-34485944 None:intergenic
ACTCGTTAATATATCCAAAA+AGG 0.268007 8.1:+34487767 MS.gene008796:CDS
TGTTTCTGAAGTTGCGATTA+TGG 0.269601 8.1:+34486559 MS.gene008796:CDS
TGATTCTTGTTTATTTGAAA+TGG 0.272590 8.1:-34486282 None:intergenic
CAACAACCTCATTTCCCTTC+TGG 0.282693 8.1:+34485993 MS.gene008796:CDS
AAGCAAACCCTGAAGATTAT+AGG 0.291078 8.1:-34487512 None:intergenic
AATTATTGAGGAGAAGAAAT+TGG 0.298748 8.1:+34486466 MS.gene008796:CDS
TGAGAAGGGGAGGTAATAGA+AGG 0.299425 8.1:-34485831 None:intergenic
AGAGTTTCCCTATAATCTTC+AGG 0.300670 8.1:+34487504 MS.gene008796:CDS
AGCTTGCCCGCCCACTCGTC+AGG 0.308865 8.1:-34488060 None:intergenic
GTTAATGATAAAGGATCTAT+TGG 0.313384 8.1:-34485798 None:intergenic
AGTAGCTCTGGTTAAGAAAA+AGG 0.316965 8.1:+34486313 MS.gene008796:CDS
ATGTCATTAAATAGCCTAAT+AGG 0.327262 8.1:-34487334 None:intergenic
AAGCGGTGCTCCGGTGGAAA+TGG 0.334829 8.1:-34485907 None:intergenic
GGATTGAGGGTTGACATGTT+AGG 0.336861 8.1:-34485873 None:intergenic
AGCAACACGATTCCGACAAT+TGG 0.337163 8.1:-34487587 None:intergenic
AGTGTAGAGGTTAGATTGAT+TGG 0.337421 8.1:-34486063 None:intergenic
ATACATTTGGACTCGAACTA+TGG 0.339033 8.1:-34487927 None:intergenic
TTGGGAGGACAAGAGCAAAA+AGG 0.339571 8.1:-34487568 None:intergenic
CACAAACTGGTTGGGGAGTT+AGG 0.342051 8.1:+34487650 MS.gene008796:CDS
ATCATATTCGTGGTGACATA+TGG 0.343625 8.1:+34486669 MS.gene008796:CDS
TATGGTTGTATCGCGATAAA+AGG 0.345751 8.1:+34486720 MS.gene008796:CDS
GGTGGAAATGGGAGTGAGTT+GGG 0.348906 8.1:-34485895 None:intergenic
AGGCGGTTATGAGGATGATA+TGG 0.357241 8.1:+34486904 MS.gene008796:CDS
TGTATAGGATTATTGATTGC+TGG 0.360049 8.1:+34487134 MS.gene008796:CDS
GTTTCAAGGGTTAATGATAA+AGG 0.365643 8.1:-34485807 None:intergenic
ACCTGATATAGATTATTCTA+TGG 0.365689 8.1:+34487867 MS.gene008796:CDS
GCATTACGGGATCGAGATTA+GGG 0.365857 8.1:+34487045 MS.gene008796:CDS
CTAGGAAGATTAAGAAAATT+GGG 0.368395 8.1:+34487251 MS.gene008796:CDS
TCCTGTATACTCGCAGATAA+AGG 0.370071 8.1:-34487698 None:intergenic
AGCAAACCCTGAAGATTATA+GGG 0.370075 8.1:-34487511 None:intergenic
TCCATAGAATAATCTATATC+AGG 0.373576 8.1:-34487868 None:intergenic
TGGTGAAGAAATCATCAAAA+TGG 0.374248 8.1:-34485956 None:intergenic
TGGGAGTGAGTTGGGGATTG+AGG 0.377704 8.1:-34485887 None:intergenic
AGCATAGGTTGGAAGTGTTT+AGG 0.378808 8.1:+34487623 MS.gene008796:CDS
GTTAGGTTTAGGGACGAGTA+TGG 0.379859 8.1:-34485934 None:intergenic
GATTGAGGGTTGACATGTTA+GGG 0.381292 8.1:-34485872 None:intergenic
ATGGTGGAATTATGTGTAAT+TGG 0.382160 8.1:+34486791 MS.gene008796:CDS
TATAGATAGATGGGCAGAAT+GGG 0.382516 8.1:+34487792 MS.gene008796:CDS
TAATCTATATCAGGTATTAA+TGG 0.385147 8.1:-34487859 None:intergenic
TAGGTCTGCACAAACTGGTT+GGG 0.389899 8.1:+34487642 MS.gene008796:CDS
TTTATCGGAAGTAGCATTAG+AGG 0.389943 8.1:-34486108 None:intergenic
TGCATTACGGGATCGAGATT+AGG 0.391240 8.1:+34487044 MS.gene008796:CDS
TGAATCTGCAGAAGCATTGT+TGG 0.391424 8.1:-34486162 None:intergenic
TCGGAATCGTGTTGCTCAAA+AGG 0.393717 8.1:+34487594 MS.gene008796:CDS
AGAGGGAGAATGTTCCTATT+AGG 0.395044 8.1:+34487320 MS.gene008796:CDS
AATTCTTCTTTCTTCCTCCT+TGG 0.396457 8.1:-34486961 None:intergenic
ACAAACTGAACAAATACATT+TGG 0.398498 8.1:-34487940 None:intergenic
CTAAATCATAACCTTAATAT+GGG 0.399163 8.1:+34486218 MS.gene008796:CDS
AGGTTGTTGTTGGGAACCTT+GGG 0.401571 8.1:-34485979 None:intergenic
TAAAGGCTCCAGCTTGAATA+AGG 0.402182 8.1:-34487681 None:intergenic
TTGATTGCTGGTTTGAAGAA+TGG 0.404449 8.1:+34487146 MS.gene008796:CDS
GCTCTTGTCCTCCCAATTGT+CGG 0.405346 8.1:+34487575 MS.gene008796:CDS
GATTCTTGTTTATTTGAAAT+GGG 0.406495 8.1:-34486281 None:intergenic
TAAAGGATCTATTGGATTCA+TGG 0.409301 8.1:-34485790 None:intergenic
TATAAGTTATTGAGAGTTGA+AGG 0.409965 8.1:+34487193 MS.gene008796:CDS
GGTAAGGTTTATGTTTATGA+TGG 0.410667 8.1:+34487109 MS.gene008796:CDS
CTGATCACAAATTTGAATTG+AGG 0.414878 8.1:-34486984 None:intergenic
AGAGATTGGTTGAGGAGAAG+AGG 0.415274 8.1:+34486516 MS.gene008796:CDS
ATTGGTTGAGGAGAAGAGGT+TGG 0.418514 8.1:+34486520 MS.gene008796:CDS
GGGAGTGAGTTGGGGATTGA+GGG 0.418786 8.1:-34485886 None:intergenic
TTATGAGGATGATATGGAAT+TGG 0.420516 8.1:+34486910 MS.gene008796:CDS
AAAATGATAAAGGGATTTAT+CGG 0.421885 8.1:-34486123 None:intergenic
ATGTTTATGATGGATTGTAT+AGG 0.423249 8.1:+34487119 MS.gene008796:CDS
CAATGCTTCTGCAGATTCAA+TGG 0.424147 8.1:+34486166 MS.gene008796:CDS
GCCTTTATCTGCGAGTATAC+AGG 0.424211 8.1:+34487697 MS.gene008796:CDS
AAGAAATCATCAAAATGGTT+AGG 0.428730 8.1:-34485951 None:intergenic
GGGTTGACATGTTAGGGATT+TGG 0.431533 8.1:-34485866 None:intergenic
GGTGAGAAGAAGTTTGAGAA+GGG 0.432588 8.1:-34485845 None:intergenic
AGAAGAGGTTGGATGAGGAT+AGG 0.436158 8.1:+34486531 MS.gene008796:CDS
CGGAATCGTGTTGCTCAAAA+GGG 0.437967 8.1:+34487595 MS.gene008796:CDS
AGTAGCAATTGGCTCGCCAT+TGG 0.452219 8.1:-34486867 None:intergenic
GTGTTTAGGTCTGCACAAAC+TGG 0.452666 8.1:+34487637 MS.gene008796:CDS
AAGGGAAATGAGGTTGTTGT+TGG 0.453858 8.1:-34485989 None:intergenic
TATGGAGGCAGATAAGAGAT+TGG 0.454514 8.1:+34486502 MS.gene008796:CDS
AGGATAGTTGGTTCGATACC+TGG 0.455737 8.1:+34486740 MS.gene008796:CDS
TCAACAGAAAGACAATTCAT+AGG 0.456778 8.1:-34487286 None:intergenic
TGCGATTATGGAGGCGGAGA+TGG 0.457729 8.1:+34486571 MS.gene008796:CDS
GGCAGATAAGAGATTGGTTG+AGG 0.458910 8.1:+34486508 MS.gene008796:CDS
GATGATATGGAATTGGATAA+TGG 0.459588 8.1:+34486917 MS.gene008796:CDS
CATCAGAGCGGGAAAGCTAC+TGG 0.462434 8.1:+34487424 MS.gene008796:CDS
AGGTAATAGAAGGGGTTTCA+AGG 0.463004 8.1:-34485821 None:intergenic
CTTCTTTCTTCCTCCTTGGC+CGG 0.463064 8.1:-34486957 None:intergenic
AATCAATCTCATTTCCCTCC+TGG 0.464661 8.1:+34486029 MS.gene008796:CDS
GTAGCAATTGGCTCGCCATT+GGG 0.469298 8.1:-34486866 None:intergenic
ACAATCACACTAGTAGCAAT+TGG 0.471909 8.1:-34486878 None:intergenic
TCCTTGGACCTTATTCAAGC+TGG 0.472407 8.1:+34487673 MS.gene008796:CDS
AGTTGAAGGGCAAACTAAGA+TGG 0.474128 8.1:+34487207 MS.gene008796:CDS
GAGTTTCCCTATAATCTTCA+GGG 0.474710 8.1:+34487505 MS.gene008796:CDS
TATCGCGATAAAAGGATAGT+TGG 0.479508 8.1:+34486728 MS.gene008796:CDS
TTAGAGCGTAGTATGCATTA+CGG 0.480635 8.1:+34487031 MS.gene008796:CDS
TAAGGTTATGATTTAGTCCA+AGG 0.481584 8.1:-34486211 None:intergenic
TCAGTCAATATTTCTGACCT+TGG 0.482765 8.1:+34486194 MS.gene008796:CDS
GCAACACGATTCCGACAATT+GGG 0.484911 8.1:-34487586 None:intergenic
CTACTTAGTTACATACATAC+TGG 0.485115 8.1:-34488084 None:intergenic
TAGAGCGTAGTATGCATTAC+GGG 0.486228 8.1:+34487032 MS.gene008796:CDS
GAAGATTAAGAAAATTGGGT+TGG 0.487319 8.1:+34487255 MS.gene008796:CDS
TCAGGTATTAATGGATATGA+TGG 0.489556 8.1:-34487850 None:intergenic
TAATGAAGGACCGAGAGTTA+TGG 0.490732 8.1:+34486702 MS.gene008796:CDS
AGCGGTGCTCCGGTGGAAAT+GGG 0.492091 8.1:-34485906 None:intergenic
AGGGAAATGAGGTTGTTGTT+GGG 0.492139 8.1:-34485988 None:intergenic
AGACGTTATAATCATATTCG+TGG 0.492546 8.1:+34486659 MS.gene008796:CDS
GGATGAGAAAAGAATTATTG+AGG 0.492648 8.1:+34486454 MS.gene008796:CDS
CTTCAGGGTTTGCTTGTGAA+AGG 0.494789 8.1:+34487520 MS.gene008796:CDS
TCATATTCGTGGTGACATAT+GGG 0.495464 8.1:+34486670 MS.gene008796:CDS
TGATTGGTGTGTTCATATCC+AGG 0.498306 8.1:-34486047 None:intergenic
ATCATGTTCGACAGTAGCTC+TGG 0.498627 8.1:+34486301 MS.gene008796:CDS
TATGGTTTGAAGCGGTGCTC+CGG 0.502918 8.1:-34485916 None:intergenic
TTGTTGTTGGGAACCTTGGG+TGG 0.503224 8.1:-34485976 None:intergenic
TGTGTGGAGGCTTGTACTGA+TGG 0.507598 8.1:+34487454 MS.gene008796:CDS
TGAGGAGAAGAGGTTGGATG+AGG 0.507616 8.1:+34486526 MS.gene008796:CDS
AGGTCTGCACAAACTGGTTG+GGG 0.507788 8.1:+34487643 MS.gene008796:CDS
GTGAGAAGAAGTTTGAGAAG+GGG 0.507936 8.1:-34485844 None:intergenic
TAGATAGATGGGCAGAATGG+GGG 0.511424 8.1:+34487794 MS.gene008796:CDS
GCGATTATGGAGGCGGAGAT+GGG 0.511508 8.1:+34486572 MS.gene008796:CDS
ACATCAGATTGTTATGATCA+TGG 0.511816 8.1:-34487966 None:intergenic
AGAGAACTCAGCATAGACTA+TGG 0.515257 8.1:+34488033 MS.gene008796:CDS
GAGGTTGTTGTTGGGAACCT+TGG 0.515342 8.1:-34485980 None:intergenic
AGAAGAAGTTTGAGAAGGGG+AGG 0.515562 8.1:-34485841 None:intergenic
TGGTGAGAAGAAGTTTGAGA+AGG 0.516679 8.1:-34485846 None:intergenic
TTATAGATAGATGGGCAGAA+TGG 0.518603 8.1:+34487791 MS.gene008796:CDS
ATGGAGGCGGAGATGGGAGC+TGG 0.518912 8.1:+34486578 MS.gene008796:CDS
GGCATCCCTGACGAGTGGGC+GGG 0.520972 8.1:+34488054 MS.gene008796:CDS
GATGATTTCTTCACCACCCA+AGG 0.524018 8.1:+34485963 MS.gene008796:CDS
CGGTGGAAATGGGAGTGAGT+TGG 0.525640 8.1:-34485896 None:intergenic
TGGTTTGAAGAATGGATGAA+TGG 0.533714 8.1:+34487154 MS.gene008796:CDS
AGATAGATGGGCAGAATGGG+GGG 0.535500 8.1:+34487795 MS.gene008796:CDS
GAGAAGGGGAGGTAATAGAA+GGG 0.535917 8.1:-34485830 None:intergenic
TTCGTGGGATGAAGTATGAA+GGG 0.537787 8.1:+34487071 MS.gene008796:CDS
TGAAGTTGCGATTATGGAGG+CGG 0.538130 8.1:+34486565 MS.gene008796:CDS
GGTGATGTAATAATCTATAC+CGG 0.538669 8.1:+34486938 MS.gene008796:CDS
AATTTGTGATCAGAAATTAG+AGG 0.546612 8.1:+34486994 MS.gene008796:CDS
TCGATACCTGGAGTTTATGT+TGG 0.551588 8.1:+34486752 MS.gene008796:CDS
ATAAGTTATTGAGAGTTGAA+GGG 0.555115 8.1:+34487194 MS.gene008796:CDS
GATTGTTTCAGGCGGTTATG+AGG 0.556692 8.1:+34486895 MS.gene008796:CDS
GGTTTGTATTTCATCAGAGC+GGG 0.557067 8.1:+34487413 MS.gene008796:CDS
CAAATATGAGTATGAAGGAT+CGG 0.557193 8.1:+34486360 MS.gene008796:CDS
ATGGAGGGCGAAATGTTGAA+TGG 0.558277 8.1:+34486632 MS.gene008796:CDS
ATCGAGATTAGGGTTATTCG+TGG 0.558682 8.1:+34487055 MS.gene008796:CDS
AGCTACTGGCTGTGAATGTG+TGG 0.559389 8.1:+34487438 MS.gene008796:CDS
AGAGGCAGCAACATGGATGG+AGG 0.559470 8.1:+34486616 MS.gene008796:CDS
CCGTCTCATGCTATATGCAA+TGG 0.560658 8.1:+34487993 MS.gene008796:CDS
AGAAGGGGAGGTAATAGAAG+GGG 0.561081 8.1:-34485829 None:intergenic
TGTTGATATTTCACACAAGA+GGG 0.562610 8.1:+34487303 MS.gene008796:CDS
AAAGGGGATGAAGCATAGGT+TGG 0.562619 8.1:+34487612 MS.gene008796:CDS
CGCGATACAACCATAACTCT+CGG 0.563453 8.1:-34486712 None:intergenic
TTAGGTCTGCACAAACTGGT+TGG 0.564740 8.1:+34487641 MS.gene008796:CDS
TGGTGATGAGAACATGGAAG+AGG 0.565897 8.1:+34486598 MS.gene008796:CDS
GGAAGATACTCATAATGAAG+AGG 0.568013 8.1:-34487373 None:intergenic
GGGTGCGTCTAGCTCTGGTA+AGG 0.568302 8.1:+34487093 MS.gene008796:CDS
GTGGAAATGGGAGTGAGTTG+GGG 0.568955 8.1:-34485894 None:intergenic
GCTTGCCCGCCCACTCGTCA+GGG 0.569654 8.1:-34488059 None:intergenic
TGGCATCCCTGACGAGTGGG+CGG 0.569853 8.1:+34488053 MS.gene008796:CDS
ATTCGTGGGATGAAGTATGA+AGG 0.571493 8.1:+34487070 MS.gene008796:CDS
GAAGTAGCATTAGAGGGTTG+TGG 0.573204 8.1:-34486101 None:intergenic
TGTTGTAGTACTTAGTGTAG+AGG 0.573712 8.1:-34486076 None:intergenic
CTGTTGATATTTCACACAAG+AGG 0.573952 8.1:+34487302 MS.gene008796:CDS
CATTGCATATAGCATGAGAC+GGG 0.574005 8.1:-34487992 None:intergenic
ATAGATAGATGGGCAGAATG+GGG 0.576328 8.1:+34487793 MS.gene008796:CDS
GGTTTGAAGCGGTGCTCCGG+TGG 0.577375 8.1:-34485913 None:intergenic
GTGTTGTTCTCAAAGATGCT+AGG 0.577721 8.1:+34487233 MS.gene008796:CDS
ATTTGTGATCAGAAATTAGA+GGG 0.579266 8.1:+34486995 MS.gene008796:CDS
ATGGGCTGCGAGGTTAATGA+AGG 0.580888 8.1:+34486688 MS.gene008796:CDS
GGAAGAGGCAGCAACATGGA+TGG 0.581307 8.1:+34486613 MS.gene008796:CDS
TTGCATATGCAGATACAAGC+TGG 0.583868 8.1:+34486815 MS.gene008796:CDS
CAACTCACTCCCATTTCCAC+CGG 0.584867 8.1:+34485897 MS.gene008796:CDS
GTAATAATCTATACCGGCCA+AGG 0.586629 8.1:+34486944 MS.gene008796:CDS
CCATTGCATATAGCATGAGA+CGG 0.588288 8.1:-34487993 None:intergenic
TGCTGAGTTCTCTCAACGGA+GGG 0.589565 8.1:-34488023 None:intergenic
TTATCGGAAGTAGCATTAGA+GGG 0.591714 8.1:-34486107 None:intergenic
GTATTCAAATATGAGTATGA+AGG 0.592101 8.1:+34486355 MS.gene008796:CDS
CTCAAAAGGGGATGAAGCAT+AGG 0.594626 8.1:+34487608 MS.gene008796:CDS
GCAACGTGATGAGGAGAACA+AGG 0.596580 8.1:+34486393 MS.gene008796:CDS
CTCTGATGAAATACAAACCA+CGG 0.598765 8.1:-34487409 None:intergenic
ACATCACCAACATAAACTCC+AGG 0.599500 8.1:-34486758 None:intergenic
TGGTTGGGGAGTTAGGTCCT+TGG 0.600362 8.1:+34487657 MS.gene008796:CDS
GGTAATAGAAGGGGTTTCAA+GGG 0.602104 8.1:-34485820 None:intergenic
TTGTTGTGTTCATATCCAGA+AGG 0.602561 8.1:-34486008 None:intergenic
GGGAGCTGGTGATGAGAACA+TGG 0.604987 8.1:+34486592 MS.gene008796:CDS
GTTGAAGGGCAAACTAAGAT+GGG 0.605405 8.1:+34487208 MS.gene008796:CDS
GCATACTACGCTCTAAAGCA+AGG 0.606571 8.1:-34487024 None:intergenic
GGGACGAGTATGGTTTGAAG+CGG 0.607757 8.1:-34485924 None:intergenic
TAAATCATAACCTTAATATG+GGG 0.609176 8.1:+34486219 MS.gene008796:CDS
TCATATCCAGAAGGGAAATG+AGG 0.611409 8.1:-34485999 None:intergenic
TGTTGTGTTCATATCCAGAA+GGG 0.611765 8.1:-34486007 None:intergenic
ACGTGTGTTAGCAAGTATTG+AGG 0.613466 8.1:+34486433 MS.gene008796:CDS
AGGCAAGTCAGATGCTTGTG+AGG 0.614350 8.1:+34486333 MS.gene008796:CDS
TCGTGGGATGAAGTATGAAG+GGG 0.618537 8.1:+34487072 MS.gene008796:CDS
TCCAGCTTGAATAAGGTCCA+AGG 0.620502 8.1:-34487674 None:intergenic
TTCTGAAGTTGCGATTATGG+AGG 0.624607 8.1:+34486562 MS.gene008796:CDS
CTATGGCATCCCTGACGAGT+GGG 0.626017 8.1:+34488050 MS.gene008796:CDS
GAGGCAGCAACATGGATGGA+GGG 0.628691 8.1:+34486617 MS.gene008796:CDS
ACATGGAAGAGGCAGCAACA+TGG 0.634502 8.1:+34486609 MS.gene008796:CDS
TCGAGATTAGGGTTATTCGT+GGG 0.635248 8.1:+34487056 MS.gene008796:CDS
TGTGATCAGAAATTAGAGGG+TGG 0.640509 8.1:+34486998 MS.gene008796:CDS
TACTGGCTGTGAATGTGTGG+AGG 0.644458 8.1:+34487441 MS.gene008796:CDS
AAATCATAACCTTAATATGG+GGG 0.649898 8.1:+34486220 MS.gene008796:CDS
ACTATGGCATCCCTGACGAG+TGG 0.651275 8.1:+34488049 MS.gene008796:CDS
GGAATCGTGTTGCTCAAAAG+GGG 0.665750 8.1:+34487596 MS.gene008796:CDS
TGGTGTGTTCATATCCAGGA+GGG 0.666587 8.1:-34486043 None:intergenic
ATGCTGAGTTCTCTCAACGG+AGG 0.671604 8.1:-34488024 None:intergenic
TGGTTTGTATTTCATCAGAG+CGG 0.676509 8.1:+34487412 MS.gene008796:CDS
ACACGATTCCGACAATTGGG+AGG 0.682616 8.1:-34487583 None:intergenic
ACTAGTGTGATTGTTTCAGG+CGG 0.687424 8.1:+34486887 MS.gene008796:CDS
CCTAAAAGTAGGTCTCCCAA+TGG 0.692154 8.1:+34486851 MS.gene008796:CDS
CGTGGGATGAAGTATGAAGG+GGG 0.704890 8.1:+34487073 MS.gene008796:CDS
ATAATCTATACCGGCCAAGG+AGG 0.705547 8.1:+34486947 MS.gene008796:CDS
GTGGTGACATATGGGCTGCG+AGG 0.720019 8.1:+34486678 MS.gene008796:CDS
TTGGTGTGTTCATATCCAGG+AGG 0.720395 8.1:-34486044 None:intergenic
ATTGCATATAGCATGAGACG+GGG 0.721884 8.1:-34487991 None:intergenic
TTGCATATAGCATGAGACGG+GGG 0.722787 8.1:-34487990 None:intergenic
TCTATGCTGAGTTCTCTCAA+CGG 0.725900 8.1:-34488027 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAGGTTTATAGATAGAT+GGG + chr8.1:34487783-34487802 MS.gene008796:CDS 20.0%
!! AAAATGATAAAGGGATTTAT+CGG - chr8.1:34486126-34486145 None:intergenic 20.0%
!! ACTAAATCATAACCTTAATA+TGG + chr8.1:34486217-34486236 MS.gene008796:CDS 20.0%
!! CTAAATCATAACCTTAATAT+GGG + chr8.1:34486218-34486237 MS.gene008796:CDS 20.0%
!! TAAATCATAACCTTAATATG+GGG + chr8.1:34486219-34486238 MS.gene008796:CDS 20.0%
!! TAATCTATATCAGGTATTAA+TGG - chr8.1:34487862-34487881 None:intergenic 20.0%
!!! GATTCTTGTTTATTTGAAAT+GGG - chr8.1:34486284-34486303 None:intergenic 20.0%
!!! GATTTTGAGAAAATGATAAA+GGG - chr8.1:34486135-34486154 None:intergenic 20.0%
!!! TGATTCTTGTTTATTTGAAA+TGG - chr8.1:34486285-34486304 None:intergenic 20.0%
! AAATCATAACCTTAATATGG+GGG + chr8.1:34486220-34486239 MS.gene008796:CDS 25.0%
! AAGAAATCATCAAAATGGTT+AGG - chr8.1:34485954-34485973 None:intergenic 25.0%
! AATTATTGAGGAGAAGAAAT+TGG + chr8.1:34486466-34486485 MS.gene008796:CDS 25.0%
! AATTTGTGATCAGAAATTAG+AGG + chr8.1:34486994-34487013 MS.gene008796:CDS 25.0%
! ACAAACTGAACAAATACATT+TGG - chr8.1:34487943-34487962 None:intergenic 25.0%
! ACCTGATATAGATTATTCTA+TGG + chr8.1:34487867-34487886 MS.gene008796:CDS 25.0%
! ACTCGTTAATATATCCAAAA+AGG + chr8.1:34487767-34487786 MS.gene008796:CDS 25.0%
! ATAAGTTATTGAGAGTTGAA+GGG + chr8.1:34487194-34487213 MS.gene008796:CDS 25.0%
! ATGTCATTAAATAGCCTAAT+AGG - chr8.1:34487337-34487356 None:intergenic 25.0%
! ATTTGTGATCAGAAATTAGA+GGG + chr8.1:34486995-34487014 MS.gene008796:CDS 25.0%
! CAAAAAGGTTTATAGATAGA+TGG + chr8.1:34487782-34487801 MS.gene008796:CDS 25.0%
! CTAGGAAGATTAAGAAAATT+GGG + chr8.1:34487251-34487270 MS.gene008796:CDS 25.0%
! GTATTCAAATATGAGTATGA+AGG + chr8.1:34486355-34486374 MS.gene008796:CDS 25.0%
! GTTAATGATAAAGGATCTAT+TGG - chr8.1:34485801-34485820 None:intergenic 25.0%
! TATAAGTTATTGAGAGTTGA+AGG + chr8.1:34487193-34487212 MS.gene008796:CDS 25.0%
! TCCATAGAATAATCTATATC+AGG - chr8.1:34487871-34487890 None:intergenic 25.0%
!! CATCTATCTATAAACCTTTT+TGG - chr8.1:34487784-34487803 None:intergenic 25.0%
!! TTGATTTTCTTCCTAAAAGT+AGG + chr8.1:34486840-34486859 MS.gene008796:CDS 25.0%
!!! ATACAGGAGTAATTTTAACA+AGG + chr8.1:34487713-34487732 MS.gene008796:CDS 25.0%
!!! ATGTTTATGATGGATTGTAT+AGG + chr8.1:34487119-34487138 MS.gene008796:CDS 25.0%
!!! CGATTTTGAGAAAATGATAA+AGG - chr8.1:34486136-34486155 None:intergenic 25.0%
!!! GCTCAAATTTTAACAATGAA+TGG + chr8.1:34487742-34487761 MS.gene008796:CDS 25.0%
!!! TACAGGAGTAATTTTAACAA+GGG + chr8.1:34487714-34487733 MS.gene008796:CDS 25.0%
ACATCAGATTGTTATGATCA+TGG - chr8.1:34487969-34487988 None:intergenic 30.0%
AGACGTTATAATCATATTCG+TGG + chr8.1:34486659-34486678 MS.gene008796:CDS 30.0%
CAAATATGAGTATGAAGGAT+CGG + chr8.1:34486360-34486379 MS.gene008796:CDS 30.0%
CATCAAAATGGTTAGGTTTA+GGG - chr8.1:34485947-34485966 None:intergenic 30.0%
CTGATCACAAATTTGAATTG+AGG - chr8.1:34486987-34487006 None:intergenic 30.0%
GAAGATTAAGAAAATTGGGT+TGG + chr8.1:34487255-34487274 MS.gene008796:CDS 30.0%
GATGATATGGAATTGGATAA+TGG + chr8.1:34486917-34486936 MS.gene008796:CDS 30.0%
GCTAGGAAGATTAAGAAAAT+TGG + chr8.1:34487250-34487269 MS.gene008796:CDS 30.0%
GGATGAGAAAAGAATTATTG+AGG + chr8.1:34486454-34486473 MS.gene008796:CDS 30.0%
GGTAAGGTTTATGTTTATGA+TGG + chr8.1:34487109-34487128 MS.gene008796:CDS 30.0%
GGTGATGTAATAATCTATAC+CGG + chr8.1:34486938-34486957 MS.gene008796:CDS 30.0%
GTTTCAAGGGTTAATGATAA+AGG - chr8.1:34485810-34485829 None:intergenic 30.0%
TAAGGTTATGATTTAGTCCA+AGG - chr8.1:34486214-34486233 None:intergenic 30.0%
TCAACAGAAAGACAATTCAT+AGG - chr8.1:34487289-34487308 None:intergenic 30.0%
TCATCAAAATGGTTAGGTTT+AGG - chr8.1:34485948-34485967 None:intergenic 30.0%
TGGTGAAGAAATCATCAAAA+TGG - chr8.1:34485959-34485978 None:intergenic 30.0%
TGTTGATATTTCACACAAGA+GGG + chr8.1:34487303-34487322 MS.gene008796:CDS 30.0%
TTATGAGGATGATATGGAAT+TGG + chr8.1:34486910-34486929 MS.gene008796:CDS 30.0%
! AACCACGGAAAAATAGTTTT+TGG - chr8.1:34487397-34487416 None:intergenic 30.0%
! ATGGTGGAATTATGTGTAAT+TGG + chr8.1:34486791-34486810 MS.gene008796:CDS 30.0%
! TCAGGTATTAATGGATATGA+TGG - chr8.1:34487853-34487872 None:intergenic 30.0%
! TGATGTTTTCTTGTATATGG+TGG + chr8.1:34486775-34486794 MS.gene008796:CDS 30.0%
! TGTATAGGATTATTGATTGC+TGG + chr8.1:34487134-34487153 MS.gene008796:CDS 30.0%
!! AAGCCTTTGATTTTTGAATG+TGG + chr8.1:34487544-34487563 MS.gene008796:CDS 30.0%
!! TGGTGATGTTTTCTTGTATA+TGG + chr8.1:34486772-34486791 MS.gene008796:CDS 30.0%
!! TTCCAAAAACTATTTTTCCG+TGG + chr8.1:34487392-34487411 MS.gene008796:CDS 30.0%
AAGCAAACCCTGAAGATTAT+AGG - chr8.1:34487515-34487534 None:intergenic 35.0%
AATTCTTCTTTCTTCCTCCT+TGG - chr8.1:34486964-34486983 None:intergenic 35.0%
ACAATCACACTAGTAGCAAT+TGG - chr8.1:34486881-34486900 None:intergenic 35.0%
AGAGTTTCCCTATAATCTTC+AGG + chr8.1:34487504-34487523 MS.gene008796:CDS 35.0%
AGCAAACCCTGAAGATTATA+GGG - chr8.1:34487514-34487533 None:intergenic 35.0%
AGTGTAGAGGTTAGATTGAT+TGG - chr8.1:34486066-34486085 None:intergenic 35.0%
ATACATTTGGACTCGAACTA+TGG - chr8.1:34487930-34487949 None:intergenic 35.0%
ATCATATTCGTGGTGACATA+TGG + chr8.1:34486669-34486688 MS.gene008796:CDS 35.0%
CTCTGATGAAATACAAACCA+CGG - chr8.1:34487412-34487431 None:intergenic 35.0%
CTGTTGATATTTCACACAAG+AGG + chr8.1:34487302-34487321 MS.gene008796:CDS 35.0%
GAGTTTCCCTATAATCTTCA+GGG + chr8.1:34487505-34487524 MS.gene008796:CDS 35.0%
GGAAGATACTCATAATGAAG+AGG - chr8.1:34487376-34487395 None:intergenic 35.0%
TATAGATAGATGGGCAGAAT+GGG + chr8.1:34487792-34487811 MS.gene008796:CDS 35.0%
TATCGCGATAAAAGGATAGT+TGG + chr8.1:34486728-34486747 MS.gene008796:CDS 35.0%
TATGGTTGTATCGCGATAAA+AGG + chr8.1:34486720-34486739 MS.gene008796:CDS 35.0%
TCATATTCGTGGTGACATAT+GGG + chr8.1:34486670-34486689 MS.gene008796:CDS 35.0%
TGGTTTGAAGAATGGATGAA+TGG + chr8.1:34487154-34487173 MS.gene008796:CDS 35.0%
TGTTGTAGTACTTAGTGTAG+AGG - chr8.1:34486079-34486098 None:intergenic 35.0%
TGTTGTGTTCATATCCAGAA+GGG - chr8.1:34486010-34486029 None:intergenic 35.0%
TTAGAGCGTAGTATGCATTA+CGG + chr8.1:34487031-34487050 MS.gene008796:CDS 35.0%
TTATAGATAGATGGGCAGAA+TGG + chr8.1:34487791-34487810 MS.gene008796:CDS 35.0%
TTATCGGAAGTAGCATTAGA+GGG - chr8.1:34486110-34486129 None:intergenic 35.0%
TTGTTGTGTTCATATCCAGA+AGG - chr8.1:34486011-34486030 None:intergenic 35.0%
TTTATCGGAAGTAGCATTAG+AGG - chr8.1:34486111-34486130 None:intergenic 35.0%
! ATTGGCTGACGAAGTTTTTA+TGG + chr8.1:34486484-34486503 MS.gene008796:CDS 35.0%
! TCAGTCAATATTTCTGACCT+TGG + chr8.1:34486194-34486213 MS.gene008796:CDS 35.0%
! TGGTTTGTATTTCATCAGAG+CGG + chr8.1:34487412-34487431 MS.gene008796:CDS 35.0%
!! AGTAGCTCTGGTTAAGAAAA+AGG + chr8.1:34486313-34486332 MS.gene008796:CDS 35.0%
!! TGTTTCTGAAGTTGCGATTA+TGG + chr8.1:34486559-34486578 MS.gene008796:CDS 35.0%
!! TTGATTGCTGGTTTGAAGAA+TGG + chr8.1:34487146-34487165 MS.gene008796:CDS 35.0%
AAGGGAAATGAGGTTGTTGT+TGG - chr8.1:34485992-34486011 None:intergenic 40.0%
AATCAATCTCATTTCCCTCC+TGG + chr8.1:34486029-34486048 MS.gene008796:CDS 40.0%
ACATCACCAACATAAACTCC+AGG - chr8.1:34486761-34486780 None:intergenic 40.0%
ACTAGTGTGATTGTTTCAGG+CGG + chr8.1:34486887-34486906 MS.gene008796:CDS 40.0%
AGAGAACTCAGCATAGACTA+TGG + chr8.1:34488033-34488052 MS.gene008796:CDS 40.0%
AGAGGGAGAATGTTCCTATT+AGG + chr8.1:34487320-34487339 MS.gene008796:CDS 40.0%
AGGTAATAGAAGGGGTTTCA+AGG - chr8.1:34485824-34485843 None:intergenic 40.0%
AGTTGAAGGGCAAACTAAGA+TGG + chr8.1:34487207-34487226 MS.gene008796:CDS 40.0%
ATAGATAGATGGGCAGAATG+GGG + chr8.1:34487793-34487812 MS.gene008796:CDS 40.0%
ATCGAGATTAGGGTTATTCG+TGG + chr8.1:34487055-34487074 MS.gene008796:CDS 40.0%
ATTCGTGGGATGAAGTATGA+AGG + chr8.1:34487070-34487089 MS.gene008796:CDS 40.0%
ATTGCATATAGCATGAGACG+GGG - chr8.1:34487994-34488013 None:intergenic 40.0%
CAAAATCCACCCCCATATTA+AGG - chr8.1:34486232-34486251 None:intergenic 40.0%
CAATGCTTCTGCAGATTCAA+TGG + chr8.1:34486166-34486185 MS.gene008796:CDS 40.0%
CATTGCATATAGCATGAGAC+GGG - chr8.1:34487995-34488014 None:intergenic 40.0%
CCATTGCATATAGCATGAGA+CGG - chr8.1:34487996-34488015 None:intergenic 40.0%
GATTGAGGGTTGACATGTTA+GGG - chr8.1:34485875-34485894 None:intergenic 40.0%
GCTACTAGTGTGATTGTTTC+AGG + chr8.1:34486884-34486903 MS.gene008796:CDS 40.0%
GGGCCACATTCAAAAATCAA+AGG - chr8.1:34487550-34487569 None:intergenic 40.0%
GGTAATAGAAGGGGTTTCAA+GGG - chr8.1:34485823-34485842 None:intergenic 40.0%
GGTGAGAAGAAGTTTGAGAA+GGG - chr8.1:34485848-34485867 None:intergenic 40.0%
GGTTTGTATTTCATCAGAGC+GGG + chr8.1:34487413-34487432 MS.gene008796:CDS 40.0%
GTAATAATCTATACCGGCCA+AGG + chr8.1:34486944-34486963 MS.gene008796:CDS 40.0%
GTGAGAAGAAGTTTGAGAAG+GGG - chr8.1:34485847-34485866 None:intergenic 40.0%
GTTGAAGGGCAAACTAAGAT+GGG + chr8.1:34487208-34487227 MS.gene008796:CDS 40.0%
TAAAGGCTCCAGCTTGAATA+AGG - chr8.1:34487684-34487703 None:intergenic 40.0%
TAATGAAGGACCGAGAGTTA+TGG + chr8.1:34486702-34486721 MS.gene008796:CDS 40.0%
TAGAGCGTAGTATGCATTAC+GGG + chr8.1:34487032-34487051 MS.gene008796:CDS 40.0%
TATGGAGGCAGATAAGAGAT+TGG + chr8.1:34486502-34486521 MS.gene008796:CDS 40.0%
TCATAACCTTAATATGGGGG+TGG + chr8.1:34486223-34486242 MS.gene008796:CDS 40.0%
TCATATCCAGAAGGGAAATG+AGG - chr8.1:34486002-34486021 None:intergenic 40.0%
TCCTGTATACTCGCAGATAA+AGG - chr8.1:34487701-34487720 None:intergenic 40.0%
TCGAGATTAGGGTTATTCGT+GGG + chr8.1:34487056-34487075 MS.gene008796:CDS 40.0%
TCGATACCTGGAGTTTATGT+TGG + chr8.1:34486752-34486771 MS.gene008796:CDS 40.0%
TCTATGCTGAGTTCTCTCAA+CGG - chr8.1:34488030-34488049 None:intergenic 40.0%
TGATTGGTGTGTTCATATCC+AGG - chr8.1:34486050-34486069 None:intergenic 40.0%
TGGTGAGAAGAAGTTTGAGA+AGG - chr8.1:34485849-34485868 None:intergenic 40.0%
TGTGATCAGAAATTAGAGGG+TGG + chr8.1:34486998-34487017 MS.gene008796:CDS 40.0%
TTCGTGGGATGAAGTATGAA+GGG + chr8.1:34487071-34487090 MS.gene008796:CDS 40.0%
TTGCATATGCAGATACAAGC+TGG + chr8.1:34486815-34486834 MS.gene008796:CDS 40.0%
! ACGTGTGTTAGCAAGTATTG+AGG + chr8.1:34486433-34486452 MS.gene008796:CDS 40.0%
! AGGGAAATGAGGTTGTTGTT+GGG - chr8.1:34485991-34486010 None:intergenic 40.0%
! GTGTTGTTCTCAAAGATGCT+AGG + chr8.1:34487233-34487252 MS.gene008796:CDS 40.0%
! TGCATTTTTGCAACGTGATG+AGG + chr8.1:34486384-34486403 MS.gene008796:CDS 40.0%
!! AGCATAGGTTGGAAGTGTTT+AGG + chr8.1:34487623-34487642 MS.gene008796:CDS 40.0%
!! TAATATGGGGGTGGATTTTG+TGG + chr8.1:34486232-34486251 MS.gene008796:CDS 40.0%
!! TGAATCTGCAGAAGCATTGT+TGG - chr8.1:34486165-34486184 None:intergenic 40.0%
!! TTCTGAAGTTGCGATTATGG+AGG + chr8.1:34486562-34486581 MS.gene008796:CDS 40.0%
AAAGGGGATGAAGCATAGGT+TGG + chr8.1:34487612-34487631 MS.gene008796:CDS 45.0%
AGAAGAAGTTTGAGAAGGGG+AGG - chr8.1:34485844-34485863 None:intergenic 45.0%
AGAAGAGGTTGGATGAGGAT+AGG + chr8.1:34486531-34486550 MS.gene008796:CDS 45.0%
AGAAGGGGAGGTAATAGAAG+GGG - chr8.1:34485832-34485851 None:intergenic 45.0%
AGCAACACGATTCCGACAAT+TGG - chr8.1:34487590-34487609 None:intergenic 45.0%
AGGCGGTTATGAGGATGATA+TGG + chr8.1:34486904-34486923 MS.gene008796:CDS 45.0%
ATAATCTATACCGGCCAAGG+AGG + chr8.1:34486947-34486966 MS.gene008796:CDS 45.0%
ATCATGTTCGACAGTAGCTC+TGG + chr8.1:34486301-34486320 MS.gene008796:CDS 45.0%
ATGGAGGGCGAAATGTTGAA+TGG + chr8.1:34486632-34486651 MS.gene008796:CDS 45.0%
ATTGGTTGAGGAGAAGAGGT+TGG + chr8.1:34486520-34486539 MS.gene008796:CDS 45.0%
CAACAACCTCATTTCCCTTC+TGG + chr8.1:34485993-34486012 MS.gene008796:CDS 45.0%
CCGTCTCATGCTATATGCAA+TGG + chr8.1:34487993-34488012 MS.gene008796:CDS 45.0%
CCTAAAAGTAGGTCTCCCAA+TGG + chr8.1:34486851-34486870 MS.gene008796:CDS 45.0%
CGCGATACAACCATAACTCT+CGG - chr8.1:34486715-34486734 None:intergenic 45.0%
CTCAAAAGGGGATGAAGCAT+AGG + chr8.1:34487608-34487627 MS.gene008796:CDS 45.0%
GAAGTAGCATTAGAGGGTTG+TGG - chr8.1:34486104-34486123 None:intergenic 45.0%
GAGAAGGGGAGGTAATAGAA+GGG - chr8.1:34485833-34485852 None:intergenic 45.0%
GATGATTTCTTCACCACCCA+AGG + chr8.1:34485963-34485982 MS.gene008796:CDS 45.0%
GATTGTTTCAGGCGGTTATG+AGG + chr8.1:34486895-34486914 MS.gene008796:CDS 45.0%
GCAACACGATTCCGACAATT+GGG - chr8.1:34487589-34487608 None:intergenic 45.0%
GCATTACGGGATCGAGATTA+GGG + chr8.1:34487045-34487064 MS.gene008796:CDS 45.0%
GCCTTTATCTGCGAGTATAC+AGG + chr8.1:34487697-34487716 MS.gene008796:CDS 45.0%
GGATTGAGGGTTGACATGTT+AGG - chr8.1:34485876-34485895 None:intergenic 45.0%
GGGTTGACATGTTAGGGATT+TGG - chr8.1:34485869-34485888 None:intergenic 45.0%
GTGTTTAGGTCTGCACAAAC+TGG + chr8.1:34487637-34487656 MS.gene008796:CDS 45.0%
GTTAGGTTTAGGGACGAGTA+TGG - chr8.1:34485937-34485956 None:intergenic 45.0%
TAGATAGATGGGCAGAATGG+GGG + chr8.1:34487794-34487813 MS.gene008796:CDS 45.0%
TAGGTCTGCACAAACTGGTT+GGG + chr8.1:34487642-34487661 MS.gene008796:CDS 45.0%
TCCAGCTTGAATAAGGTCCA+AGG - chr8.1:34487677-34487696 None:intergenic 45.0%
TCCTTGGACCTTATTCAAGC+TGG + chr8.1:34487673-34487692 MS.gene008796:CDS 45.0%
TCGTGGGATGAAGTATGAAG+GGG + chr8.1:34487072-34487091 MS.gene008796:CDS 45.0%
TGAAGTTGCGATTATGGAGG+CGG + chr8.1:34486565-34486584 MS.gene008796:CDS 45.0%
TGAGAAGGGGAGGTAATAGA+AGG - chr8.1:34485834-34485853 None:intergenic 45.0%
TGCATTACGGGATCGAGATT+AGG + chr8.1:34487044-34487063 MS.gene008796:CDS 45.0%
TGGGAGGACAAGAGCAAAAA+GGG - chr8.1:34487570-34487589 None:intergenic 45.0%
TGGTGTGTTCATATCCAGGA+GGG - chr8.1:34486046-34486065 None:intergenic 45.0%
TTAGGTCTGCACAAACTGGT+TGG + chr8.1:34487641-34487660 MS.gene008796:CDS 45.0%
TTGCATATAGCATGAGACGG+GGG - chr8.1:34487993-34488012 None:intergenic 45.0%
TTGGGAGGACAAGAGCAAAA+AGG - chr8.1:34487571-34487590 None:intergenic 45.0%
TTGGTGTGTTCATATCCAGG+AGG - chr8.1:34486047-34486066 None:intergenic 45.0%
! AGAGATTGGTTGAGGAGAAG+AGG + chr8.1:34486516-34486535 MS.gene008796:CDS 45.0%
! AGGTTGTTGTTGGGAACCTT+GGG - chr8.1:34485982-34486001 None:intergenic 45.0%
! CGGAATCGTGTTGCTCAAAA+GGG + chr8.1:34487595-34487614 MS.gene008796:CDS 45.0%
! CTTCAGGGTTTGCTTGTGAA+AGG + chr8.1:34487520-34487539 MS.gene008796:CDS 45.0%
! CTTTTGCTCCAGGAAGAATG+GGG + chr8.1:34487480-34487499 MS.gene008796:CDS 45.0%
! GCTTTTGCTCCAGGAAGAAT+GGG + chr8.1:34487479-34487498 MS.gene008796:CDS 45.0%
! GGAATCGTGTTGCTCAAAAG+GGG + chr8.1:34487596-34487615 MS.gene008796:CDS 45.0%
! GGCAGATAAGAGATTGGTTG+AGG + chr8.1:34486508-34486527 MS.gene008796:CDS 45.0%
! GGCTGACGAAGTTTTTATGG+AGG + chr8.1:34486487-34486506 MS.gene008796:CDS 45.0%
! TCGGAATCGTGTTGCTCAAA+AGG + chr8.1:34487594-34487613 MS.gene008796:CDS 45.0%
! TGCTTTTGCTCCAGGAAGAA+TGG + chr8.1:34487478-34487497 MS.gene008796:CDS 45.0%
! TGGTGATGAGAACATGGAAG+AGG + chr8.1:34486598-34486617 MS.gene008796:CDS 45.0%
! TTTTGCTCCAGGAAGAATGG+GGG + chr8.1:34487481-34487500 MS.gene008796:CDS 45.0%
!! AGGATAGTTGGTTCGATACC+TGG + chr8.1:34486740-34486759 MS.gene008796:CDS 45.0%
!! CCATTGGGAGACCTACTTTT+AGG - chr8.1:34486854-34486873 None:intergenic 45.0%
!! GCATACTACGCTCTAAAGCA+AGG - chr8.1:34487027-34487046 None:intergenic 45.0%
AAACTCTCCCCCATTCTTCC+TGG - chr8.1:34487491-34487510 None:intergenic 50.0%
ACACGATTCCGACAATTGGG+AGG - chr8.1:34487586-34487605 None:intergenic 50.0%
ACATGGAAGAGGCAGCAACA+TGG + chr8.1:34486609-34486628 MS.gene008796:CDS 50.0%
AGATAGATGGGCAGAATGGG+GGG + chr8.1:34487795-34487814 MS.gene008796:CDS 50.0%
AGGCAAGTCAGATGCTTGTG+AGG + chr8.1:34486333-34486352 MS.gene008796:CDS 50.0%
AGGTCTGCACAAACTGGTTG+GGG + chr8.1:34487643-34487662 MS.gene008796:CDS 50.0%
ATGCTGAGTTCTCTCAACGG+AGG - chr8.1:34488027-34488046 None:intergenic 50.0%
CAACTCACTCCCATTTCCAC+CGG + chr8.1:34485897-34485916 MS.gene008796:CDS 50.0%
CACAAACTGGTTGGGGAGTT+AGG + chr8.1:34487650-34487669 MS.gene008796:CDS 50.0%
CGTGGGATGAAGTATGAAGG+GGG + chr8.1:34487073-34487092 MS.gene008796:CDS 50.0%
CTTCTTTCTTCCTCCTTGGC+CGG - chr8.1:34486960-34486979 None:intergenic 50.0%
GCAACGTGATGAGGAGAACA+AGG + chr8.1:34486393-34486412 MS.gene008796:CDS 50.0%
GCTCTTGTCCTCCCAATTGT+CGG + chr8.1:34487575-34487594 MS.gene008796:CDS 50.0%
GGGACGAGTATGGTTTGAAG+CGG - chr8.1:34485927-34485946 None:intergenic 50.0%
GGTGGAAATGGGAGTGAGTT+GGG - chr8.1:34485898-34485917 None:intergenic 50.0%
GTGGAAATGGGAGTGAGTTG+GGG - chr8.1:34485897-34485916 None:intergenic 50.0%
TGAGGAGAAGAGGTTGGATG+AGG + chr8.1:34486526-34486545 MS.gene008796:CDS 50.0%
TGCTGAGTTCTCTCAACGGA+GGG - chr8.1:34488026-34488045 None:intergenic 50.0%
TGTGTGGAGGCTTGTACTGA+TGG + chr8.1:34487454-34487473 MS.gene008796:CDS 50.0%
! AGCTACTGGCTGTGAATGTG+TGG + chr8.1:34487438-34487457 MS.gene008796:CDS 50.0%
! ATGGGCTGCGAGGTTAATGA+AGG + chr8.1:34486688-34486707 MS.gene008796:CDS 50.0%
! GAGGTTGTTGTTGGGAACCT+TGG - chr8.1:34485983-34486002 None:intergenic 50.0%
! TACTGGCTGTGAATGTGTGG+AGG + chr8.1:34487441-34487460 MS.gene008796:CDS 50.0%
! TATGGTTTGAAGCGGTGCTC+CGG - chr8.1:34485919-34485938 None:intergenic 50.0%
! TTGTTGTTGGGAACCTTGGG+TGG - chr8.1:34485979-34485998 None:intergenic 50.0%
!! AGTAGCAATTGGCTCGCCAT+TGG - chr8.1:34486870-34486889 None:intergenic 50.0%
!! GTAGCAATTGGCTCGCCATT+GGG - chr8.1:34486869-34486888 None:intergenic 50.0%
ACTATGGCATCCCTGACGAG+TGG + chr8.1:34488049-34488068 MS.gene008796:CDS 55.0%
AGAGGCAGCAACATGGATGG+AGG + chr8.1:34486616-34486635 MS.gene008796:CDS 55.0%
CATCAGAGCGGGAAAGCTAC+TGG + chr8.1:34487424-34487443 MS.gene008796:CDS 55.0%
CGGTGGAAATGGGAGTGAGT+TGG - chr8.1:34485899-34485918 None:intergenic 55.0%
CTATGGCATCCCTGACGAGT+GGG + chr8.1:34488050-34488069 MS.gene008796:CDS 55.0%
GAGGCAGCAACATGGATGGA+GGG + chr8.1:34486617-34486636 MS.gene008796:CDS 55.0%
GCGATTATGGAGGCGGAGAT+GGG + chr8.1:34486572-34486591 MS.gene008796:CDS 55.0%
GGAAGAGGCAGCAACATGGA+TGG + chr8.1:34486613-34486632 MS.gene008796:CDS 55.0%
TGCGATTATGGAGGCGGAGA+TGG + chr8.1:34486571-34486590 MS.gene008796:CDS 55.0%
TGGTTGGGGAGTTAGGTCCT+TGG + chr8.1:34487657-34487676 MS.gene008796:CDS 55.0%
! GGGAGCTGGTGATGAGAACA+TGG + chr8.1:34486592-34486611 MS.gene008796:CDS 55.0%
! GGGAGTGAGTTGGGGATTGA+GGG - chr8.1:34485889-34485908 None:intergenic 55.0%
! TGGGAGTGAGTTGGGGATTG+AGG - chr8.1:34485890-34485909 None:intergenic 55.0%
!!! CTGATGGCTGCTTTTGCTCC+AGG + chr8.1:34487470-34487489 MS.gene008796:CDS 55.0%
AAGCGGTGCTCCGGTGGAAA+TGG - chr8.1:34485910-34485929 None:intergenic 60.0%
AGCGGTGCTCCGGTGGAAAT+GGG - chr8.1:34485909-34485928 None:intergenic 60.0%
! GTGGTGACATATGGGCTGCG+AGG + chr8.1:34486678-34486697 MS.gene008796:CDS 60.0%
!! GGGTGCGTCTAGCTCTGGTA+AGG + chr8.1:34487093-34487112 MS.gene008796:CDS 60.0%
ATGGAGGCGGAGATGGGAGC+TGG + chr8.1:34486578-34486597 MS.gene008796:CDS 65.0%
TGGCATCCCTGACGAGTGGG+CGG + chr8.1:34488053-34488072 MS.gene008796:CDS 65.0%
! GAAGGGGGTGCGTCTAGCTC+TGG + chr8.1:34487088-34487107 MS.gene008796:CDS 65.0%
! GGTTTGAAGCGGTGCTCCGG+TGG - chr8.1:34485916-34485935 None:intergenic 65.0%
AGCTTGCCCGCCCACTCGTC+AGG - chr8.1:34488063-34488082 None:intergenic 70.0%
GCTTGCCCGCCCACTCGTCA+GGG - chr8.1:34488062-34488081 None:intergenic 70.0%
GGCATCCCTGACGAGTGGGC+GGG + chr8.1:34488054-34488073 MS.gene008796:CDS 70.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 34485792 34488098 34485792 ID=MS.gene008796
chr8.1 mRNA 34485792 34488098 34485792 ID=MS.gene008796.t1;Parent=MS.gene008796
chr8.1 exon 34485792 34488098 34485792 ID=MS.gene008796.t1.exon1;Parent=MS.gene008796.t1
chr8.1 CDS 34485792 34488098 34485792 ID=cds.MS.gene008796.t1;Parent=MS.gene008796.t1
Gene Sequence

>MS.gene008796

ATGAATCCAATAGATCCTTTATCATTAACCCTTGAAACCCCTTCTATTACCTCCCCTTCTCAAACTTCTTCTCACCAAATCCCTAACATGTCAACCCTCAATCCCCAACTCACTCCCATTTCCACCGGAGCACCGCTTCAAACCATACTCGTCCCTAAACCTAACCATTTTGATGATTTCTTCACCACCCAAGGTTCCCAACAACAACCTCATTTCCCTTCTGGATATGAACACAACAATCAATCTCATTTCCCTCCTGGATATGAACACACCAATCAATCTAACCTCTACACTAAGTACTACAACATTCCACAACCCTCTAATGCTACTTCCGATAAATCCCTTTATCATTTTCTCAAAATCGATGATTCCAACAATGCTTCTGCAGATTCAATGGAGAACTCAGTCAATATTTCTGACCTTGGACTAAATCATAACCTTAATATGGGGGTGGATTTTGTGGATGATAGAAATGATCGATCTATTGTGCCCATTTCAAATAAACAAGAATCATGTTCGACAGTAGCTCTGGTTAAGAAAAAGGCAAGTCAGATGCTTGTGAGGTATTCAAATATGAGTATGAAGGATCGGATGCATTTTTGCAACGTGATGAGGAGAACAAGGATGACTTTTGATTCGCTACGTGTGTTAGCAAGTATTGAGGATGAGAAAAGAATTATTGAGGAGAAGAAATTGGCTGACGAAGTTTTTATGGAGGCAGATAAGAGATTGGTTGAGGAGAAGAGGTTGGATGAGGATAGGATATTTGTTTCTGAAGTTGCGATTATGGAGGCGGAGATGGGAGCTGGTGATGAGAACATGGAAGAGGCAGCAACATGGATGGAGGGCGAAATGTTGAATGGAAAAAGACGTTATAATCATATTCGTGGTGACATATGGGCTGCGAGGTTAATGAAGGACCGAGAGTTATGGTTGTATCGCGATAAAAGGATAGTTGGTTCGATACCTGGAGTTTATGTTGGTGATGTTTTCTTGTATATGGTGGAATTATGTGTAATTGGTTTGCATATGCAGATACAAGCTGGCATTGATTTTCTTCCTAAAAGTAGGTCTCCCAATGGCGAGCCAATTGCTACTAGTGTGATTGTTTCAGGCGGTTATGAGGATGATATGGAATTGGATAATGGTGATGTAATAATCTATACCGGCCAAGGAGGAAGAAAGAAGAATTCCTCAATTCAAATTTGTGATCAGAAATTAGAGGGTGGAAACCTTGCTTTAGAGCGTAGTATGCATTACGGGATCGAGATTAGGGTTATTCGTGGGATGAAGTATGAAGGGGGTGCGTCTAGCTCTGGTAAGGTTTATGTTTATGATGGATTGTATAGGATTATTGATTGCTGGTTTGAAGAATGGATGAATGGTTTTAGAGTTTTTAAGTATAAGTTATTGAGAGTTGAAGGGCAAACTAAGATGGGTAGTGTTGTTCTCAAAGATGCTAGGAAGATTAAGAAAATTGGGTTGGATGTTAAGCCTATGAATTGTCTTTCTGTTGATATTTCACACAAGAGGGAGAATGTTCCTATTAGGCTATTTAATGACATAGATGACAATGAAGAACCTCTTCATTATGAGTATCTTCCAAAAACTATTTTTCCGTGGTTTGTATTTCATCAGAGCGGGAAAGCTACTGGCTGTGAATGTGTGGAGGCTTGTACTGATGGCTGCTTTTGCTCCAGGAAGAATGGGGGAGAGTTTCCCTATAATCTTCAGGGTTTGCTTGTGAAAGGTAAGCCTTTGATTTTTGAATGTGGCCCTTTTTGCTCTTGTCCTCCCAATTGTCGGAATCGTGTTGCTCAAAAGGGGATGAAGCATAGGTTGGAAGTGTTTAGGTCTGCACAAACTGGTTGGGGAGTTAGGTCCTTGGACCTTATTCAAGCTGGAGCCTTTATCTGCGAGTATACAGGAGTAATTTTAACAAGGGAACAAGCTCAAATTTTAACAATGAATGGCGACTCGTTAATATATCCAAAAAGGTTTATAGATAGATGGGCAGAATGGGGGGATTTGTCTCATATATACAATAATTATGTTCGTCCATCATATCCATTAATACCTGATATAGATTATTCTATGGATATATCAACACTGCGAAATGTTGCTAGCTATTTGAGCCATAGTTCGAGTCCAAATGTATTTGTTCAGTTTGTTCTCCATGATCATAACAATCTGATGTTCCCCCGTCTCATGCTATATGCAATGGAGAACATCCCTCCGTTGAGAGAACTCAGCATAGACTATGGCATCCCTGACGAGTGGGCGGGCAAGCTACCAGTATGTATGTAA
Protein sequence

>MS.gene008796.t1

MNPIDPLSLTLETPSITSPSQTSSHQIPNMSTLNPQLTPISTGAPLQTILVPKPNHFDDFFTTQGSQQQPHFPSGYEHNNQSHFPPGYEHTNQSNLYTKYYNIPQPSNATSDKSLYHFLKIDDSNNASADSMENSVNISDLGLNHNLNMGVDFVDDRNDRSIVPISNKQESCSTVALVKKKASQMLVRYSNMSMKDRMHFCNVMRRTRMTFDSLRVLASIEDEKRIIEEKKLADEVFMEADKRLVEEKRLDEDRIFVSEVAIMEAEMGAGDENMEEAATWMEGEMLNGKRRYNHIRGDIWAARLMKDRELWLYRDKRIVGSIPGVYVGDVFLYMVELCVIGLHMQIQAGIDFLPKSRSPNGEPIATSVIVSGGYEDDMELDNGDVIIYTGQGGRKKNSSIQICDQKLEGGNLALERSMHYGIEIRVIRGMKYEGGASSSGKVYVYDGLYRIIDCWFEEWMNGFRVFKYKLLRVEGQTKMGSVVLKDARKIKKIGLDVKPMNCLSVDISHKRENVPIRLFNDIDDNEEPLHYEYLPKTIFPWFVFHQSGKATGCECVEACTDGCFCSRKNGGEFPYNLQGLLVKGKPLIFECGPFCSCPPNCRNRVAQKGMKHRLEVFRSAQTGWGVRSLDLIQAGAFICEYTGVILTREQAQILTMNGDSLIYPKRFIDRWAEWGDLSHIYNNYVRPSYPLIPDIDYSMDISTLRNVASYLSHSSSPNVFVQFVLHDHNNLMFPRLMLYAMENIPPLRELSIDYGIPDEWAGKLPVCM