AlfalfaGEDB | MS.gene008796

M. sativa cultivar XinJiangDaYe / MS.gene008796

KEGG: K11420
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005634 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008270 GO:0008276 GO:0008757 GO:0009987 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0034968 GO:0036211 GO:0042054 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046872 GO:0046914 GO:0071704 GO:0071840 GO:0110165 GO:0140096 GO:1901564
PFAM: PF00856.31 PF02182.20 PF05033.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene008796.t1	KEH20246.1	84.6	764	112	1	1	764	1	758	0.00E+00	1237.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene008796.t1	Q9T0G7	62.9	469	167	5	301	767	186	649	2.4e-176	620.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene008796.t1	A0A072TSS0	84.6	764	112	1	1	764	1	758	0.0e+00	1237.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene008796.t1	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene008796.t1	MTR_8g070075	89.136	764	77	1	1	764	1	758	0.0	1418
MS.gene008796.t1	MTR_8g070070	72.994	785	176	9	4	768	1	769	0.0	1120
MS.gene008796.t1	MTR_8g071030	63.052	793	217	8	6	768	3	749	0.0	968
MS.gene008796.t1	MTR_1g035420	67.360	481	153	3	288	767	181	658	0.0	687
MS.gene008796.t1	MTR_1g035400	60.042	473	186	3	288	759	98	568	0.0	594
MS.gene008796.t1	MTR_6g044690	53.039	543	220	13	228	756	43	564	0.0	545
MS.gene008796.t1	MTR_0376s0030	47.957	563	261	10	218	767	34	577	1.80e-175	516
MS.gene008796.t1	MTR_6g043960	48.851	522	218	11	244	756	1	482	4.22e-160	473
MS.gene008796.t1	MTR_2g054460	46.717	533	201	14	238	756	1	464	3.78e-142	426
MS.gene008796.t1	MTR_5g013420	41.037	463	250	8	296	754	615	1058	1.27e-108	357

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene008796.t1	AT4G13460	62.900	469	167	5	301	767	186	649	0.0	625
MS.gene008796.t1	AT4G13460	62.900	469	167	5	301	767	186	649	0.0	625
MS.gene008796.t1	AT2G33290	59.544	482	185	5	287	767	178	650	0.0	616
MS.gene008796.t1	AT2G33290	59.544	482	185	5	287	767	178	650	0.0	616
MS.gene008796.t1	AT2G33290	59.544	482	185	5	287	767	178	650	0.0	616
MS.gene008796.t1	AT2G33290	59.544	482	185	5	287	767	178	650	0.0	616
MS.gene008796.t1	AT2G35160	39.738	458	232	10	301	754	310	727	7.28e-95	312
MS.gene008796.t1	AT2G35160	39.738	458	232	10	301	754	346	763	1.99e-94	312
MS.gene008796.t1	AT2G35160	39.738	458	232	10	301	754	346	763	1.99e-94	312
MS.gene008796.t1	AT2G35160	39.738	458	232	10	301	754	346	763	1.99e-94	312

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Find 216 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGATAAAGGGATTTAT+CGG	0.421885	8.1:-34486123	None:intergenic
AAAGGGGATGAAGCATAGGT+TGG	0.562619	8.1:+34487612	MS.gene008796:CDS
AAATCATAACCTTAATATGG+GGG	0.649898	8.1:+34486220	MS.gene008796:CDS
AAGAAATCATCAAAATGGTT+AGG	0.428730	8.1:-34485951	None:intergenic
AAGCAAACCCTGAAGATTAT+AGG	0.291078	8.1:-34487512	None:intergenic
AAGCGGTGCTCCGGTGGAAA+TGG	0.334829	8.1:-34485907	None:intergenic
AAGGGAAATGAGGTTGTTGT+TGG	0.453858	8.1:-34485989	None:intergenic
AATCAATCTCATTTCCCTCC+TGG	0.464661	8.1:+34486029	MS.gene008796:CDS
AATTATTGAGGAGAAGAAAT+TGG	0.298748	8.1:+34486466	MS.gene008796:CDS
AATTCTTCTTTCTTCCTCCT+TGG	0.396457	8.1:-34486961	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACATCAGATTGTTATGATCA+TGG	-	chr8.1:34487969-34487988	None:intergenic	30.0%
AGACGTTATAATCATATTCG+TGG	+	chr8.1:34486659-34486678	MS.gene008796:CDS	30.0%
CAAATATGAGTATGAAGGAT+CGG	+	chr8.1:34486360-34486379	MS.gene008796:CDS	30.0%
CATCAAAATGGTTAGGTTTA+GGG	-	chr8.1:34485947-34485966	None:intergenic	30.0%
CTGATCACAAATTTGAATTG+AGG	-	chr8.1:34486987-34487006	None:intergenic	30.0%
GAAGATTAAGAAAATTGGGT+TGG	+	chr8.1:34487255-34487274	MS.gene008796:CDS	30.0%
GATGATATGGAATTGGATAA+TGG	+	chr8.1:34486917-34486936	MS.gene008796:CDS	30.0%
GCTAGGAAGATTAAGAAAAT+TGG	+	chr8.1:34487250-34487269	MS.gene008796:CDS	30.0%
GGATGAGAAAAGAATTATTG+AGG	+	chr8.1:34486454-34486473	MS.gene008796:CDS	30.0%
GGTAAGGTTTATGTTTATGA+TGG	+	chr8.1:34487109-34487128	MS.gene008796:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	34485792	34488098	34485792	ID=MS.gene008796
chr8.1	mRNA	34485792	34488098	34485792	ID=MS.gene008796.t1;Parent=MS.gene008796
chr8.1	exon	34485792	34488098	34485792	ID=MS.gene008796.t1.exon1;Parent=MS.gene008796.t1
chr8.1	CDS	34485792	34488098	34485792	ID=cds.MS.gene008796.t1;Parent=MS.gene008796.t1

Gene Sequence

>MS.gene008796

ATGAATCCAATAGATCCTTTATCATTAACCCTTGAAACCCCTTCTATTACCTCCCCTTCTCAAACTTCTTCTCACCAAATCCCTAACATGTCAACCCTCAATCCCCAACTCACTCCCATTTCCACCGGAGCACCGCTTCAAACCATACTCGTCCCTAAACCTAACCATTTTGATGATTTCTTCACCACCCAAGGTTCCCAACAACAACCTCATTTCCCTTCTGGATATGAACACAACAATCAATCTCATTTCCCTCCTGGATATGAACACACCAATCAATCTAACCTCTACACTAAGTACTACAACATTCCACAACCCTCTAATGCTACTTCCGATAAATCCCTTTATCATTTTCTCAAAATCGATGATTCCAACAATGCTTCTGCAGATTCAATGGAGAACTCAGTCAATATTTCTGACCTTGGACTAAATCATAACCTTAATATGGGGGTGGATTTTGTGGATGATAGAAATGATCGATCTATTGTGCCCATTTCAAATAAACAAGAATCATGTTCGACAGTAGCTCTGGTTAAGAAAAAGGCAAGTCAGATGCTTGTGAGGTATTCAAATATGAGTATGAAGGATCGGATGCATTTTTGCAACGTGATGAGGAGAACAAGGATGACTTTTGATTCGCTACGTGTGTTAGCAAGTATTGAGGATGAGAAAAGAATTATTGAGGAGAAGAAATTGGCTGACGAAGTTTTTATGGAGGCAGATAAGAGATTGGTTGAGGAGAAGAGGTTGGATGAGGATAGGATATTTGTTTCTGAAGTTGCGATTATGGAGGCGGAGATGGGAGCTGGTGATGAGAACATGGAAGAGGCAGCAACATGGATGGAGGGCGAAATGTTGAATGGAAAAAGACGTTATAATCATATTCGTGGTGACATATGGGCTGCGAGGTTAATGAAGGACCGAGAGTTATGGTTGTATCGCGATAAAAGGATAGTTGGTTCGATACCTGGAGTTTATGTTGGTGATGTTTTCTTGTATATGGTGGAATTATGTGTAATTGGTTTGCATATGCAGATACAAGCTGGCATTGATTTTCTTCCTAAAAGTAGGTCTCCCAATGGCGAGCCAATTGCTACTAGTGTGATTGTTTCAGGCGGTTATGAGGATGATATGGAATTGGATAATGGTGATGTAATAATCTATACCGGCCAAGGAGGAAGAAAGAAGAATTCCTCAATTCAAATTTGTGATCAGAAATTAGAGGGTGGAAACCTTGCTTTAGAGCGTAGTATGCATTACGGGATCGAGATTAGGGTTATTCGTGGGATGAAGTATGAAGGGGGTGCGTCTAGCTCTGGTAAGGTTTATGTTTATGATGGATTGTATAGGATTATTGATTGCTGGTTTGAAGAATGGATGAATGGTTTTAGAGTTTTTAAGTATAAGTTATTGAGAGTTGAAGGGCAAACTAAGATGGGTAGTGTTGTTCTCAAAGATGCTAGGAAGATTAAGAAAATTGGGTTGGATGTTAAGCCTATGAATTGTCTTTCTGTTGATATTTCACACAAGAGGGAGAATGTTCCTATTAGGCTATTTAATGACATAGATGACAATGAAGAACCTCTTCATTATGAGTATCTTCCAAAAACTATTTTTCCGTGGTTTGTATTTCATCAGAGCGGGAAAGCTACTGGCTGTGAATGTGTGGAGGCTTGTACTGATGGCTGCTTTTGCTCCAGGAAGAATGGGGGAGAGTTTCCCTATAATCTTCAGGGTTTGCTTGTGAAAGGTAAGCCTTTGATTTTTGAATGTGGCCCTTTTTGCTCTTGTCCTCCCAATTGTCGGAATCGTGTTGCTCAAAAGGGGATGAAGCATAGGTTGGAAGTGTTTAGGTCTGCACAAACTGGTTGGGGAGTTAGGTCCTTGGACCTTATTCAAGCTGGAGCCTTTATCTGCGAGTATACAGGAGTAATTTTAACAAGGGAACAAGCTCAAATTTTAACAATGAATGGCGACTCGTTAATATATCCAAAAAGGTTTATAGATAGATGGGCAGAATGGGGGGATTTGTCTCATATATACAATAATTATGTTCGTCCATCATATCCATTAATACCTGATATAGATTATTCTATGGATATATCAACACTGCGAAATGTTGCTAGCTATTTGAGCCATAGTTCGAGTCCAAATGTATTTGTTCAGTTTGTTCTCCATGATCATAACAATCTGATGTTCCCCCGTCTCATGCTATATGCAATGGAGAACATCCCTCCGTTGAGAGAACTCAGCATAGACTATGGCATCCCTGACGAGTGGGCGGGCAAGCTACCAGTATGTATGTAA

Protein sequence

>MS.gene008796.t1

MNPIDPLSLTLETPSITSPSQTSSHQIPNMSTLNPQLTPISTGAPLQTILVPKPNHFDDFFTTQGSQQQPHFPSGYEHNNQSHFPPGYEHTNQSNLYTKYYNIPQPSNATSDKSLYHFLKIDDSNNASADSMENSVNISDLGLNHNLNMGVDFVDDRNDRSIVPISNKQESCSTVALVKKKASQMLVRYSNMSMKDRMHFCNVMRRTRMTFDSLRVLASIEDEKRIIEEKKLADEVFMEADKRLVEEKRLDEDRIFVSEVAIMEAEMGAGDENMEEAATWMEGEMLNGKRRYNHIRGDIWAARLMKDRELWLYRDKRIVGSIPGVYVGDVFLYMVELCVIGLHMQIQAGIDFLPKSRSPNGEPIATSVIVSGGYEDDMELDNGDVIIYTGQGGRKKNSSIQICDQKLEGGNLALERSMHYGIEIRVIRGMKYEGGASSSGKVYVYDGLYRIIDCWFEEWMNGFRVFKYKLLRVEGQTKMGSVVLKDARKIKKIGLDVKPMNCLSVDISHKRENVPIRLFNDIDDNEEPLHYEYLPKTIFPWFVFHQSGKATGCECVEACTDGCFCSRKNGGEFPYNLQGLLVKGKPLIFECGPFCSCPPNCRNRVAQKGMKHRLEVFRSAQTGWGVRSLDLIQAGAFICEYTGVILTREQAQILTMNGDSLIYPKRFIDRWAEWGDLSHIYNNYVRPSYPLIPDIDYSMDISTLRNVASYLSHSSSPNVFVQFVLHDHNNLMFPRLMLYAMENIPPLRELSIDYGIPDEWAGKLPVCM