AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene008900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene008900.t1 MTR_8g067635 53.182 220 72 4 7 216 323 521 1.15e-64 209
MS.gene008900.t1 MTR_2g024380 46.914 243 108 5 9 230 227 469 2.10e-62 202
MS.gene008900.t1 MTR_8g067650 50.655 229 74 6 13 230 319 519 2.30e-60 198
MS.gene008900.t1 MTR_2g024350 46.429 224 97 4 29 230 4 226 2.26e-59 187
MS.gene008900.t1 MTR_6g053200 40.000 240 114 5 10 230 307 535 1.23e-44 156
MS.gene008900.t1 MTR_8g069935 40.000 220 65 3 11 230 310 462 5.15e-42 148
MS.gene008900.t1 MTR_7g104980 42.857 182 84 2 54 215 18 199 4.88e-41 139
MS.gene008900.t1 MTR_1g099600 50.505 99 48 1 11 109 163 260 4.32e-29 111
MS.gene008900.t1 MTR_8g028565 50.943 106 49 2 23 126 145 249 5.75e-27 106
MS.gene008900.t1 MTR_7g079040 50.000 96 47 1 10 105 131 225 6.48e-25 100
MS.gene008900.t1 MTR_8g098945 62.500 72 26 1 34 105 130 200 4.40e-24 97.1
MS.gene008900.t1 MTR_2g032030 41.463 123 63 3 1 115 227 348 3.55e-22 94.4
MS.gene008900.t1 MTR_2g032030 41.463 123 63 3 1 115 227 348 9.88e-22 93.2
MS.gene008900.t1 MTR_2g016770 50.602 83 39 1 19 99 13 95 1.77e-20 86.3
MS.gene008900.t1 MTR_2g016770 50.602 83 39 1 19 99 21 103 1.88e-20 86.3
MS.gene008900.t1 MTR_4g094908 56.000 75 32 1 31 104 264 338 7.00e-20 87.0
MS.gene008900.t1 MTR_2g083870 58.209 67 28 0 27 93 74 140 1.40e-19 84.7
MS.gene008900.t1 MTR_1g070455 59.420 69 24 1 31 95 291 359 2.76e-19 85.5
MS.gene008900.t1 MTR_3g009470 46.078 102 52 3 3 104 251 349 3.04e-19 86.3
MS.gene008900.t1 MTR_3g009470 45.205 73 39 1 31 103 493 564 1.55e-14 72.8
MS.gene008900.t1 MTR_7g080020 48.352 91 45 2 23 113 270 358 3.30e-19 86.3
MS.gene008900.t1 MTR_7g080020 47.297 74 38 1 31 104 491 563 3.40e-15 74.7
MS.gene008900.t1 MTR_3g009470 46.078 102 52 3 3 104 251 349 5.83e-19 85.5
MS.gene008900.t1 MTR_7g080000 47.253 91 46 2 23 113 224 312 8.66e-19 85.1
MS.gene008900.t1 MTR_7g080000 51.562 64 30 1 31 94 430 492 2.30e-14 72.0
MS.gene008900.t1 MTR_8g087000 50.000 72 36 0 28 99 72 143 9.71e-19 82.4
MS.gene008900.t1 MTR_8g087000 50.000 72 36 0 28 99 71 142 1.07e-18 82.0
MS.gene008900.t1 MTR_5g016610 60.000 60 24 0 31 90 197 256 1.18e-18 82.4
MS.gene008900.t1 MTR_3g108960 45.238 84 43 1 12 92 290 373 4.53e-18 82.4
MS.gene008900.t1 MTR_4g127040 58.333 60 25 0 31 90 243 302 1.06e-17 80.5
MS.gene008900.t1 MTR_1g009613 55.738 61 27 0 31 91 260 320 1.78e-17 80.1
MS.gene008900.t1 MTR_7g109600 48.611 72 37 0 23 94 43 114 1.89e-17 79.3
MS.gene008900.t1 MTR_7g011820 44.681 94 45 3 29 117 224 315 2.20e-17 80.9
MS.gene008900.t1 MTR_7g011820 46.988 83 42 2 33 115 410 490 3.53e-16 77.4
MS.gene008900.t1 MTR_0117s0040 51.515 66 32 0 31 96 72 137 4.44e-17 77.8
MS.gene008900.t1 MTR_7g071120 53.425 73 32 2 25 97 158 228 1.06e-16 79.0
MS.gene008900.t1 MTR_7g071120 43.210 81 37 2 31 103 322 401 1.01e-12 67.0
MS.gene008900.t1 MTR_7g100510 47.727 88 43 3 17 103 173 258 1.48e-16 78.2
MS.gene008900.t1 MTR_7g100510 47.059 68 35 1 34 101 362 428 1.75e-14 72.4
MS.gene008900.t1 MTR_4g130900 47.222 72 37 1 22 93 348 418 2.40e-16 77.8
MS.gene008900.t1 MTR_5g097490 55.072 69 27 3 29 96 88 153 6.78e-16 76.3
MS.gene008900.t1 MTR_5g097490 41.892 74 42 1 22 95 241 313 2.86e-13 68.6
MS.gene008900.t1 MTR_4g082580 50.746 67 32 1 33 99 278 343 1.03e-15 75.5
MS.gene008900.t1 MTR_4g082580 45.714 70 37 1 24 93 136 204 9.13e-14 70.1
MS.gene008900.t1 MTR_3g031220 50.000 82 33 4 19 99 189 263 1.65e-15 75.1
MS.gene008900.t1 MTR_3g031220 50.000 82 33 4 19 99 189 263 1.78e-15 75.1
MS.gene008900.t1 MTR_3g031220 46.875 64 33 1 31 94 363 425 1.23e-12 67.0
MS.gene008900.t1 MTR_7g109800 36.441 118 68 3 5 116 111 227 8.49e-15 72.4
MS.gene008900.t1 MTR_5g042920 49.254 67 33 1 33 99 320 385 1.09e-14 72.8
MS.gene008900.t1 MTR_5g042920 46.053 76 39 2 24 99 142 215 4.82e-13 68.2
MS.gene008900.t1 MTR_2g033820 47.692 65 33 1 33 97 203 266 1.36e-14 72.4
MS.gene008900.t1 MTR_5g091390 49.231 65 32 1 33 97 157 220 1.56e-14 71.6
MS.gene008900.t1 MTR_7g062220 43.902 82 45 1 9 90 100 180 2.02e-14 71.2
MS.gene008900.t1 MTR_3g056100 48.611 72 35 2 26 97 236 305 2.74e-14 72.0
MS.gene008900.t1 MTR_3g056100 44.928 69 37 1 31 99 413 480 5.25e-14 70.9
MS.gene008900.t1 MTR_3g056100 48.611 72 35 2 26 97 236 305 2.74e-14 72.0
MS.gene008900.t1 MTR_3g056100 44.928 69 37 1 31 99 400 467 5.41e-14 70.9
MS.gene008900.t1 MTR_3g053330 42.667 75 42 1 19 93 238 311 4.30e-14 71.2
MS.gene008900.t1 MTR_3g056100 48.611 72 35 2 26 97 92 161 4.65e-14 70.9
MS.gene008900.t1 MTR_3g056100 44.928 69 37 1 31 99 256 323 7.54e-14 70.5
MS.gene008900.t1 MTR_3g056100 48.611 72 35 2 26 97 92 161 4.89e-14 70.9
MS.gene008900.t1 MTR_3g056100 44.928 69 37 1 31 99 269 336 8.15e-14 70.5
MS.gene008900.t1 MTR_5g094430 46.875 64 33 1 31 94 362 424 6.02e-14 70.9
MS.gene008900.t1 MTR_5g094430 51.613 62 28 2 32 93 199 258 1.74e-12 66.6
MS.gene008900.t1 MTR_4g094588 47.692 65 33 1 33 97 178 241 6.18e-14 70.1
MS.gene008900.t1 MTR_5g074400 51.562 64 29 2 30 93 240 301 7.59e-14 70.5
MS.gene008900.t1 MTR_5g074400 48.438 64 32 1 31 94 418 480 2.37e-13 68.9
MS.gene008900.t1 MTR_5g094430 46.875 64 33 1 31 94 250 312 9.04e-14 70.1
MS.gene008900.t1 MTR_5g094430 51.613 62 28 2 32 93 87 146 2.54e-12 65.9
MS.gene008900.t1 MTR_5g094430 46.875 64 33 1 31 94 228 290 1.05e-13 69.7
MS.gene008900.t1 MTR_5g094430 51.613 62 28 2 32 93 65 124 3.07e-12 65.5
MS.gene008900.t1 MTR_2g045360 46.667 60 32 0 34 93 212 271 1.24e-13 69.7
MS.gene008900.t1 MTR_4g013260 48.438 64 32 1 30 93 181 243 1.25e-13 69.7
MS.gene008900.t1 MTR_4g013260 47.619 63 32 1 31 93 334 395 1.53e-12 66.6
MS.gene008900.t1 MTR_1g086790 43.478 69 38 1 33 101 158 225 1.70e-13 68.9
MS.gene008900.t1 MTR_8g099350 48.276 58 28 1 33 88 132 189 2.60e-13 68.6
MS.gene008900.t1 MTR_5g067680 51.724 58 26 1 33 88 202 259 3.16e-13 68.2
MS.gene008900.t1 MTR_2g105060 40.278 72 38 1 31 97 92 163 1.03e-12 65.9
MS.gene008900.t1 MTR_8g007270 44.928 69 36 2 31 99 152 218 1.09e-12 65.5
MS.gene008900.t1 MTR_3g090860 46.552 58 29 1 33 88 133 190 1.11e-12 66.6
MS.gene008900.t1 MTR_7g079010 45.000 60 32 1 31 90 139 197 1.14e-12 65.5
MS.gene008900.t1 MTR_2g105060 40.278 72 38 1 31 97 167 238 1.24e-12 66.2
MS.gene008900.t1 MTR_2g023930 39.286 84 50 1 10 93 283 365 1.55e-12 66.6
MS.gene008900.t1 MTR_8g027860 44.444 72 38 1 19 88 122 193 1.62e-12 66.2
MS.gene008900.t1 MTR_7g110720 45.000 60 33 0 34 93 217 276 2.79e-12 65.9
MS.gene008900.t1 MTR_7g110720 45.000 60 33 0 34 93 190 249 2.96e-12 65.5
MS.gene008900.t1 MTR_7g009730 47.368 57 30 0 34 90 220 276 2.99e-12 65.9
MS.gene008900.t1 MTR_5g043880 36.145 83 52 1 33 115 124 205 4.64e-12 64.3
MS.gene008900.t1 MTR_8g092140 42.424 66 36 2 31 96 158 221 4.97e-12 63.9
MS.gene008900.t1 MTR_4g049790 45.902 61 33 0 34 94 313 373 5.53e-12 65.1
MS.gene008900.t1 MTR_4g107970 45.000 60 33 0 34 93 179 238 5.69e-12 65.1
MS.gene008900.t1 MTR_5g067700 50.000 60 28 1 34 91 107 166 6.14e-12 63.5
MS.gene008900.t1 MTR_3g095080 43.077 65 35 2 31 95 166 228 6.14e-12 63.5
MS.gene008900.t1 MTR_1g013790 41.270 63 37 0 31 93 99 161 6.48e-12 63.5
MS.gene008900.t1 MTR_3g095080 43.077 65 35 2 31 95 142 204 7.81e-12 63.2
MS.gene008900.t1 MTR_7g028415 35.802 81 49 2 31 109 91 170 8.31e-12 62.0
MS.gene008900.t1 MTR_7g028710 35.802 81 49 2 31 109 91 170 8.31e-12 62.0
MS.gene008900.t1 MTR_4g094412 45.902 61 33 0 34 94 235 295 9.00e-12 64.3
MS.gene008900.t1 MTR_4g007060 41.270 63 37 0 31 93 126 188 9.43e-12 63.5
MS.gene008900.t1 MTR_4g007060 41.270 63 37 0 31 93 160 222 1.03e-11 63.5
MS.gene008900.t1 MTR_4g107970 45.000 60 33 0 34 93 256 315 1.04e-11 64.3
MS.gene008900.t1 MTR_4g094412 45.902 61 33 0 34 94 244 304 1.06e-11 64.3
MS.gene008900.t1 MTR_4g132430 36.905 84 52 1 10 93 105 187 1.13e-11 63.9
MS.gene008900.t1 MTR_3g095040 40.909 66 38 1 30 95 115 179 1.33e-11 62.0
MS.gene008900.t1 MTR_4g122530 41.935 62 35 1 33 94 208 268 1.42e-11 63.5
MS.gene008900.t1 MTR_2g088000 40.000 75 44 1 19 93 336 409 1.56e-11 63.9
MS.gene008900.t1 MTR_2g075610 47.458 59 29 1 33 89 29 87 1.70e-11 61.6
MS.gene008900.t1 MTR_3g093830 38.824 85 45 2 6 88 105 184 2.09e-11 62.8
MS.gene008900.t1 MTR_4g132430 43.333 60 34 0 34 93 262 321 3.12e-11 62.8
MS.gene008900.t1 MTR_3g106060 41.379 58 34 0 33 90 138 195 4.20e-11 61.6
MS.gene008900.t1 MTR_5g074200 38.043 92 53 3 33 122 220 309 4.76e-11 62.0
MS.gene008900.t1 MTR_1g077780 43.284 67 37 1 33 99 62 127 5.63e-11 59.3
MS.gene008900.t1 MTR_4g052030 50.909 55 15 1 36 90 8 50 6.50e-11 56.6
MS.gene008900.t1 MTR_6g086555 45.902 61 31 2 34 93 207 266 7.07e-11 61.6
MS.gene008900.t1 MTR_8g092010 46.154 65 32 3 30 93 105 167 8.13e-11 59.7
MS.gene008900.t1 MTR_3g104750 37.349 83 50 2 8 90 80 160 9.26e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene008900.t1 AT4G01250 54.217 83 37 1 23 105 118 199 7.11e-25 99.8
MS.gene008900.t1 AT5G52830 48.421 95 48 1 11 105 143 236 8.34e-25 100
MS.gene008900.t1 AT4G23550 51.685 89 42 1 17 105 124 211 2.37e-24 98.6
MS.gene008900.t1 AT5G45050 47.059 85 45 0 10 94 1018 1102 8.02e-21 91.3
MS.gene008900.t1 AT5G45050 47.059 85 45 0 10 94 1157 1241 9.13e-21 90.9
MS.gene008900.t1 AT5G45050 47.059 85 45 0 10 94 1129 1213 9.82e-21 90.9
MS.gene008900.t1 AT1G29280 58.209 67 26 1 34 98 75 141 1.87e-20 87.4
MS.gene008900.t1 AT2G34830 54.930 71 31 1 31 101 222 291 1.43e-19 87.0
MS.gene008900.t1 AT2G34830 54.930 71 31 1 31 101 213 282 1.46e-19 87.0
MS.gene008900.t1 AT3G58710 56.061 66 29 0 34 99 71 136 2.63e-19 84.3
MS.gene008900.t1 AT1G30650 41.284 109 55 2 1 101 177 284 2.74e-19 86.3
MS.gene008900.t1 AT3G58710 56.061 66 29 0 34 99 72 137 2.78e-19 84.3
MS.gene008900.t1 AT4G31550 55.882 68 30 0 31 98 243 310 3.93e-19 84.7
MS.gene008900.t1 AT4G31550 55.882 68 30 0 31 98 244 311 4.18e-19 84.7
MS.gene008900.t1 AT3G04670 57.353 68 26 1 28 92 254 321 4.77e-19 84.7
MS.gene008900.t1 AT2G23320 60.656 61 24 0 31 91 238 298 7.29e-19 84.0
MS.gene008900.t1 AT5G28650 55.882 68 27 1 28 92 254 321 1.30e-18 83.2
MS.gene008900.t1 AT4G24240 60.000 60 24 0 31 90 279 338 4.84e-18 82.0
MS.gene008900.t1 AT2G24570 56.452 62 27 0 31 92 241 302 6.11e-18 81.3
MS.gene008900.t1 AT2G30590 48.810 84 40 1 12 92 289 372 6.98e-17 79.0
MS.gene008900.t1 AT3G01080 47.887 71 35 2 29 99 201 269 8.77e-17 78.2
MS.gene008900.t1 AT3G01080 47.887 71 35 2 29 99 201 269 2.52e-16 77.8
MS.gene008900.t1 AT3G01080 50.820 61 29 1 33 93 344 403 1.12e-14 72.8
MS.gene008900.t1 AT3G01080 47.887 71 35 2 29 99 163 231 3.43e-16 77.0
MS.gene008900.t1 AT3G01080 50.820 61 29 1 33 93 306 365 1.51e-14 72.4
MS.gene008900.t1 AT4G26440 49.315 73 35 2 32 104 177 247 4.44e-16 77.0
MS.gene008900.t1 AT4G26440 43.836 73 40 1 31 103 370 441 5.83e-14 70.9
MS.gene008900.t1 AT1G13960 37.963 108 58 4 2 104 195 298 6.43e-16 76.6
MS.gene008900.t1 AT1G13960 49.180 61 30 1 33 93 409 468 7.87e-14 70.5
MS.gene008900.t1 AT5G56270 52.941 68 30 2 32 99 272 337 6.90e-16 76.6
MS.gene008900.t1 AT5G56270 48.438 64 32 1 31 94 485 547 5.43e-14 71.2
MS.gene008900.t1 AT5G07100 45.946 74 39 1 26 99 110 182 2.03e-15 74.3
MS.gene008900.t1 AT5G07100 42.254 71 40 1 31 101 232 301 1.16e-13 69.3
MS.gene008900.t1 AT1G13960 37.615 109 59 4 1 104 41 145 2.15e-15 74.7
MS.gene008900.t1 AT1G13960 49.180 61 30 1 33 93 256 315 1.49e-13 69.3
MS.gene008900.t1 AT5G45260 45.455 77 39 2 34 108 1209 1284 2.22e-15 75.5
MS.gene008900.t1 AT5G07100 45.946 74 39 1 26 99 17 89 3.04e-15 72.4
MS.gene008900.t1 AT5G07100 42.254 71 40 1 31 101 139 208 2.40e-13 67.0
MS.gene008900.t1 AT5G07100 45.946 74 39 1 26 99 17 89 3.04e-15 72.4
MS.gene008900.t1 AT5G07100 42.254 71 40 1 31 101 139 208 2.40e-13 67.0
MS.gene008900.t1 AT5G07100 45.946 74 39 1 26 99 17 89 3.04e-15 72.4
MS.gene008900.t1 AT5G07100 42.254 71 40 1 31 101 139 208 2.40e-13 67.0
MS.gene008900.t1 AT5G07100 45.946 74 39 1 26 99 17 89 3.04e-15 72.4
MS.gene008900.t1 AT5G07100 42.254 71 40 1 31 101 139 208 2.40e-13 67.0
MS.gene008900.t1 AT2G03340 49.254 67 33 1 33 99 415 480 3.07e-15 74.7
MS.gene008900.t1 AT2G03340 49.296 71 34 2 28 98 245 313 6.93e-15 73.6
MS.gene008900.t1 AT2G37260 52.542 59 27 1 33 91 349 406 4.49e-15 73.9
MS.gene008900.t1 AT2G37260 49.254 67 32 2 28 94 160 224 1.43e-13 69.7
MS.gene008900.t1 AT2G38470 40.496 121 65 4 1 116 147 265 5.20e-15 73.9
MS.gene008900.t1 AT2G38470 48.438 64 32 1 31 94 360 422 3.60e-13 68.6
MS.gene008900.t1 AT2G37260 52.542 59 27 1 33 91 269 326 6.21e-15 73.2
MS.gene008900.t1 AT2G37260 49.254 67 32 2 28 94 80 144 1.98e-13 68.9
MS.gene008900.t1 AT2G37260 52.542 59 27 1 33 91 267 324 6.45e-15 73.2
MS.gene008900.t1 AT2G37260 49.254 67 32 2 28 94 78 142 2.12e-13 68.9
MS.gene008900.t1 AT4G30935 42.466 73 41 1 22 94 320 391 1.74e-14 72.4
MS.gene008900.t1 AT1G66550 54.386 57 24 1 34 88 104 160 2.15e-14 70.5
MS.gene008900.t1 AT1G66550 54.386 57 24 1 34 88 109 165 2.63e-14 70.5
MS.gene008900.t1 AT5G43290 52.381 63 29 1 28 90 109 170 4.18e-14 70.1
MS.gene008900.t1 AT5G41570 40.000 80 45 2 13 90 76 154 4.52e-14 68.6
MS.gene008900.t1 AT2G47260 38.636 88 52 2 10 97 152 237 6.07e-14 70.5
MS.gene008900.t1 AT2G30250 42.697 89 43 4 5 93 144 224 7.57e-14 70.5
MS.gene008900.t1 AT2G30250 48.485 66 33 1 34 99 329 393 3.16e-13 68.6
MS.gene008900.t1 AT5G46350 36.364 110 61 3 23 124 171 279 9.07e-14 69.7
MS.gene008900.t1 AT1G64000 46.667 60 31 1 31 90 112 170 1.38e-13 67.4
MS.gene008900.t1 AT2G21900 48.387 62 31 1 33 94 109 169 1.68e-13 67.4
MS.gene008900.t1 AT2G46130 46.667 60 31 1 31 90 28 86 2.20e-13 64.7
MS.gene008900.t1 AT2G04880 38.947 95 53 3 12 103 287 379 2.85e-13 68.9
MS.gene008900.t1 AT2G04880 40.404 99 53 4 30 128 108 200 1.18e-12 67.0
MS.gene008900.t1 AT2G46400 45.679 81 41 2 14 91 84 164 3.15e-13 67.8
MS.gene008900.t1 AT5G49520 44.118 68 37 1 33 100 221 287 3.33e-13 68.6
MS.gene008900.t1 AT2G04880 38.947 95 53 3 12 103 263 355 3.51e-13 68.6
MS.gene008900.t1 AT2G04880 32.847 137 74 4 30 163 108 229 1.95e-12 66.2
MS.gene008900.t1 AT4G18170 43.590 78 41 2 23 98 160 236 5.09e-13 67.4
MS.gene008900.t1 AT5G22570 56.140 57 23 1 34 88 111 167 5.40e-13 67.0
MS.gene008900.t1 AT1G29860 43.478 69 38 1 33 101 136 203 6.51e-13 67.0
MS.gene008900.t1 AT4G39410 40.506 79 45 2 31 109 221 297 1.02e-12 66.6
MS.gene008900.t1 AT4G26640 40.217 92 48 3 6 97 149 233 1.23e-12 67.0
MS.gene008900.t1 AT4G26640 42.029 69 39 1 31 99 339 406 1.80e-12 66.6
MS.gene008900.t1 AT1G66560 50.000 58 27 1 33 88 103 160 1.24e-12 65.9
MS.gene008900.t1 AT4G04450 29.231 130 86 1 34 163 199 322 1.25e-12 67.0
MS.gene008900.t1 AT4G26640 40.217 92 48 3 6 97 189 273 1.40e-12 67.0
MS.gene008900.t1 AT4G26640 42.029 69 39 1 31 99 379 446 1.85e-12 66.6
MS.gene008900.t1 AT4G26640 40.217 92 48 3 6 97 117 201 1.64e-12 66.6
MS.gene008900.t1 AT4G26640 39.506 81 44 2 31 111 307 382 2.07e-12 66.2
MS.gene008900.t1 AT1G80590 49.206 63 30 1 34 94 86 148 1.77e-12 65.1
MS.gene008900.t1 AT4G01720 35.000 100 56 2 2 93 201 299 1.95e-12 66.2
MS.gene008900.t1 AT3G01970 38.272 81 47 2 31 109 63 142 2.00e-12 63.2
MS.gene008900.t1 AT2G25000 36.145 83 48 1 16 93 81 163 2.02e-12 64.7
MS.gene008900.t1 AT2G25000 36.145 83 48 1 16 93 81 163 2.02e-12 64.7
MS.gene008900.t1 AT1G55600 48.333 60 30 1 34 93 308 366 2.11e-12 66.2
MS.gene008900.t1 AT2G25000 36.145 83 48 1 16 93 103 185 2.18e-12 65.1
MS.gene008900.t1 AT2G40740 36.000 100 58 3 11 104 148 247 2.25e-12 65.5
MS.gene008900.t1 AT1G69310 44.928 69 37 1 33 101 147 214 2.28e-12 65.5
MS.gene008900.t1 AT1G69310 44.928 69 37 1 33 101 147 214 2.28e-12 65.5
MS.gene008900.t1 AT1G69310 44.928 69 37 1 33 101 147 214 2.28e-12 65.5
MS.gene008900.t1 AT2G44745 46.667 60 31 1 31 90 143 201 2.29e-12 64.3
MS.gene008900.t1 AT4G26640 39.506 81 44 2 31 111 203 278 2.34e-12 65.9
MS.gene008900.t1 AT4G26640 34.884 129 74 5 6 132 13 133 2.96e-12 65.5
MS.gene008900.t1 AT4G26640 39.506 81 44 2 31 111 203 278 2.34e-12 65.9
MS.gene008900.t1 AT4G26640 34.884 129 74 5 6 132 13 133 2.96e-12 65.5
MS.gene008900.t1 AT4G26640 39.506 81 44 2 31 111 203 278 2.34e-12 65.9
MS.gene008900.t1 AT4G26640 34.884 129 74 5 6 132 13 133 2.96e-12 65.5
MS.gene008900.t1 AT4G26640 39.506 81 44 2 31 111 203 278 2.34e-12 65.9
MS.gene008900.t1 AT4G26640 34.884 129 74 5 6 132 13 133 2.96e-12 65.5
MS.gene008900.t1 AT4G04450 29.231 130 86 1 34 163 293 416 2.45e-12 66.2
MS.gene008900.t1 AT2G40740 36.000 100 58 3 11 104 157 256 2.54e-12 65.5
MS.gene008900.t1 AT4G22070 41.333 75 43 1 19 93 284 357 2.74e-12 65.9
MS.gene008900.t1 AT4G22070 41.333 75 43 1 19 93 284 357 2.74e-12 65.9
MS.gene008900.t1 AT4G22070 41.333 75 43 1 19 93 284 357 2.74e-12 65.9
MS.gene008900.t1 AT4G22070 41.333 75 43 1 19 93 284 357 2.74e-12 65.9
MS.gene008900.t1 AT1G66600 48.276 58 28 1 33 88 103 160 3.11e-12 64.3
MS.gene008900.t1 AT1G62300 45.000 60 33 0 34 93 313 372 3.63e-12 65.5
MS.gene008900.t1 AT5G26170 46.774 62 32 1 30 91 110 170 4.09e-12 62.8
MS.gene008900.t1 AT5G01900 50.000 60 28 1 31 88 108 167 4.31e-12 64.3
MS.gene008900.t1 AT2G25000 36.145 83 48 1 16 93 124 206 4.32e-12 64.3
MS.gene008900.t1 AT3G62340 36.145 83 50 2 13 93 96 177 4.37e-12 64.3
MS.gene008900.t1 AT4G23810 50.000 66 29 3 27 89 152 216 4.69e-12 64.7
MS.gene008900.t1 AT5G15130 45.000 60 33 0 34 93 186 245 6.46e-12 64.7
MS.gene008900.t1 AT5G15130 45.000 60 33 0 34 93 228 287 7.32e-12 64.7
MS.gene008900.t1 AT4G11070 42.697 89 43 4 8 89 80 167 1.13e-11 63.5
MS.gene008900.t1 AT4G11070 42.697 89 43 4 8 89 112 199 1.30e-11 63.5
MS.gene008900.t1 AT1G80840 39.062 64 39 0 31 94 144 207 1.37e-11 63.2
MS.gene008900.t1 AT5G64810 47.761 67 30 3 31 95 108 171 2.84e-11 61.2
MS.gene008900.t1 AT1G68150 43.548 62 35 0 34 95 236 297 3.40e-11 62.4
MS.gene008900.t1 AT3G56400 34.343 99 54 2 31 118 118 216 3.84e-11 62.0
MS.gene008900.t1 AT1G69810 45.902 61 32 1 34 93 204 264 4.35e-11 62.4
MS.gene008900.t1 AT1G18860 45.000 60 33 0 34 93 240 299 5.37e-11 62.0
MS.gene008900.t1 AT1G69810 45.902 61 32 1 34 93 146 206 5.59e-11 61.6
MS.gene008900.t1 AT5G24110 36.709 79 48 1 19 95 99 177 6.11e-11 61.2
MS.gene008900.t1 AT5G13080 41.667 60 34 1 31 90 65 123 6.80e-11 58.9
MS.gene008900.t1 AT2G40750 44.262 61 32 1 30 88 149 209 7.37e-11 61.2

Find 40 sgRNAs with CRISPR-Local

Find 69 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAATTTCGCTTCTGTATA+CGG 0.189013 8.2:+33911153 None:intergenic
TGGATGTGAGGACCCTTTAA+TGG 0.244920 8.2:+33911814 None:intergenic
AAATGATAATCAAGTATCTT+TGG 0.332409 8.2:-33911903 MS.gene008900:CDS
CAAAATTTAAATCAGGAAAA+AGG 0.334262 8.2:-33912059 MS.gene008900:intron
TCATGGAGATGGAGAAAATA+TGG 0.338703 8.2:-33911845 MS.gene008900:CDS
ATTGGAATCTTCATTATGTT+GGG 0.369530 8.2:+33911200 None:intergenic
ATGGAGTTCCGATTATTTGC+TGG 0.373756 8.2:+33911444 None:intergenic
CATTGGAATCTTCATTATGT+TGG 0.374100 8.2:+33911199 None:intergenic
ATAAGGTTTCAGAGGATTCA+TGG 0.385027 8.2:-33911862 MS.gene008900:CDS
GGATGTGAGGACCCTTTAAT+GGG 0.387521 8.2:+33911815 None:intergenic
ACCCGAGCCTTGCTGCTCTC+TGG 0.394496 8.2:+33911300 None:intergenic
AGCTGCAACATTACCGCATT+AGG 0.400572 8.2:+33911330 None:intergenic
ACAATAAACCAGCAAATAAT+CGG 0.401514 8.2:-33911452 MS.gene008900:CDS
TCAACAGATGATTCAAACTT+TGG 0.410720 8.2:+33911396 None:intergenic
AAACATGACACCTATGTTAG+AGG 0.415313 8.2:-33911097 MS.gene008900:CDS
GCCAGAGAGCAGCAAGGCTC+GGG 0.426732 8.2:-33911301 MS.gene008900:CDS
GTATCTTTGGTGAGCTATGT+GGG 0.433478 8.2:-33911890 MS.gene008900:CDS
AAACGACCAAAATTTAAATC+AGG 0.434297 8.2:-33912066 MS.gene008900:CDS
TTTCACAAACATCATAAACT+TGG 0.439399 8.2:-33911358 MS.gene008900:CDS
AAGTTTGAATCATCTGTTGA+TGG 0.439589 8.2:-33911393 MS.gene008900:CDS
ACTTATGAAGTGACATATCT+AGG 0.442305 8.2:-33911486 MS.gene008900:CDS
TCTAACATAGGTGTCATGTT+TGG 0.456315 8.2:+33911099 None:intergenic
TAAATTTCGCTTCTGTATAC+GGG 0.471681 8.2:+33911154 None:intergenic
AGCCAGAGAGCAGCAAGGCT+CGG 0.475353 8.2:-33911302 MS.gene008900:CDS
AGCAAGGCTCGGGTTCTTGT+TGG 0.483467 8.2:-33911291 MS.gene008900:CDS
ACTTAGTCCTTTACCTACAC+TGG 0.501454 8.2:-33911238 MS.gene008900:CDS
TTCACAAACATCATAAACTT+GGG 0.528355 8.2:-33911357 MS.gene008900:CDS
GCTTTGCCCAGTGTAGGTAA+AGG 0.528650 8.2:+33911231 None:intergenic
TTTCAGAGGATTCATGGAGA+TGG 0.534538 8.2:-33911856 MS.gene008900:CDS
CTTAGTCCTTTACCTACACT+GGG 0.545206 8.2:-33911237 MS.gene008900:CDS
AGTATCTTTGGTGAGCTATG+TGG 0.550373 8.2:-33911891 MS.gene008900:CDS
TTGGAATCTTCATTATGTTG+GGG 0.566214 8.2:+33911201 None:intergenic
TTAAAGGGTCCTCACATCCA+AGG 0.572922 8.2:-33911811 MS.gene008900:intron
TTGTTTAGCAAGAAAACAAG+TGG 0.573603 8.2:-33911532 MS.gene008900:CDS
ACTCCATTGTCGATAGCTCT+CGG 0.621472 8.2:-33911428 MS.gene008900:CDS
AAACTTGGGTTCTCCTAATG+CGG 0.633652 8.2:-33911343 MS.gene008900:CDS
GTACCGAGAGCTATCGACAA+TGG 0.639321 8.2:+33911425 None:intergenic
TATCTTTGGTGAGCTATGTG+GGG 0.643564 8.2:-33911889 MS.gene008900:CDS
ATCTTTGGTGAGCTATGTGG+GGG 0.649381 8.2:-33911888 MS.gene008900:CDS
TGATCAGCCAGAGAGCAGCA+AGG 0.680979 8.2:-33911307 MS.gene008900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTGTTTTAATATAAGA+AGG + chr8.2:33911377-33911396 None:intergenic 10.0%
!! AAATGATAATCAAGTATCTT+TGG - chr8.2:33911221-33911240 MS.gene008900:CDS 20.0%
!! CAAAATTTAAATCAGGAAAA+AGG - chr8.2:33911065-33911084 MS.gene008900:CDS 20.0%
!! TGATTCATATGAAAAAACAT+TGG + chr8.2:33911945-33911964 None:intergenic 20.0%
!!! CTTTTTCCTGATTTAAATTT+TGG + chr8.2:33911067-33911086 None:intergenic 20.0%
!!! TTTTTTCTACAAGAAAAGAA+AGG + chr8.2:33911203-33911222 None:intergenic 20.0%
! AAAAAGAATTCCTCTAACAT+AGG + chr8.2:33912040-33912059 None:intergenic 25.0%
! AAACGACCAAAATTTAAATC+AGG - chr8.2:33911058-33911077 MS.gene008900:CDS 25.0%
! ACAATAAACCAGCAAATAAT+CGG - chr8.2:33911672-33911691 MS.gene008900:intron 25.0%
! ATAAATTTCGCTTCTGTATA+CGG + chr8.2:33911974-33911993 None:intergenic 25.0%
! ATTGGAATCTTCATTATGTT+GGG + chr8.2:33911927-33911946 None:intergenic 25.0%
! CAAGTGGAAAAAATAAAAGA+TGG - chr8.2:33911608-33911627 MS.gene008900:intron 25.0%
! GCATTTAAATGTGACAAATA+TGG - chr8.2:33911477-33911496 MS.gene008900:CDS 25.0%
! TTCACAAACATCATAAACTT+GGG - chr8.2:33911767-33911786 MS.gene008900:intron 25.0%
! TTTCACAAACATCATAAACT+TGG - chr8.2:33911766-33911785 MS.gene008900:intron 25.0%
!! TATGTTAGAGGAATTCTTTT+TGG - chr8.2:33912039-33912058 MS.gene008900:intron 25.0%
!! TTTTGAATGCTTAAAAACCT+TGG + chr8.2:33911333-33911352 None:intergenic 25.0%
!!! GATTTAAATTTTGGTCGTTT+TGG + chr8.2:33911058-33911077 None:intergenic 25.0%
!!! TAAGTTCAGTTTTTAGATCA+GGG + chr8.2:33911871-33911890 None:intergenic 25.0%
AAGTTTGAATCATCTGTTGA+TGG - chr8.2:33911731-33911750 MS.gene008900:intron 30.0%
ACTTATGAAGTGACATATCT+AGG - chr8.2:33911638-33911657 MS.gene008900:intron 30.0%
ATGGACAAAAACCCATTAAA+GGG - chr8.2:33911298-33911317 MS.gene008900:CDS 30.0%
CATTGGAATCTTCATTATGT+TGG + chr8.2:33911928-33911947 None:intergenic 30.0%
TAAATGCAACTCTTTGCAAT+GGG + chr8.2:33911464-33911483 None:intergenic 30.0%
TAAATTTCGCTTCTGTATAC+GGG + chr8.2:33911973-33911992 None:intergenic 30.0%
TATGGACAAAAACCCATTAA+AGG - chr8.2:33911297-33911316 MS.gene008900:CDS 30.0%
TCAACAGATGATTCAAACTT+TGG + chr8.2:33911731-33911750 None:intergenic 30.0%
TTAAATGCAACTCTTTGCAA+TGG + chr8.2:33911465-33911484 None:intergenic 30.0%
TTGGAATCTTCATTATGTTG+GGG + chr8.2:33911926-33911945 None:intergenic 30.0%
TTGTTTAGCAAGAAAACAAG+TGG - chr8.2:33911592-33911611 MS.gene008900:intron 30.0%
! AAGAAAGGCAACATGATTTT+AGG + chr8.2:33911188-33911207 None:intergenic 30.0%
! TTTTCTTGCTAAACAATCAC+TGG + chr8.2:33911588-33911607 None:intergenic 30.0%
!! CTAAGTTCAGTTTTTAGATC+AGG + chr8.2:33911872-33911891 None:intergenic 30.0%
AAACATGACACCTATGTTAG+AGG - chr8.2:33912027-33912046 MS.gene008900:intron 35.0%
ACTAATTAAAACCCTTGGTG+TGG + chr8.2:33911419-33911438 None:intergenic 35.0%
ATAAGGTTTCAGAGGATTCA+TGG - chr8.2:33911262-33911281 MS.gene008900:CDS 35.0%
CGTTCACTAATTAAAACCCT+TGG + chr8.2:33911424-33911443 None:intergenic 35.0%
TCATGGAGATGGAGAAAATA+TGG - chr8.2:33911279-33911298 MS.gene008900:CDS 35.0%
! CTAATTAAAACCCTTGGTGT+GGG + chr8.2:33911418-33911437 None:intergenic 35.0%
! TCTAACATAGGTGTCATGTT+TGG + chr8.2:33912028-33912047 None:intergenic 35.0%
!! CAACATGATTTTAGGTCACA+AGG + chr8.2:33911180-33911199 None:intergenic 35.0%
AAACTTGGGTTCTCCTAATG+CGG - chr8.2:33911781-33911800 MS.gene008900:intron 40.0%
ACTTAGTCCTTTACCTACAC+TGG - chr8.2:33911886-33911905 MS.gene008900:CDS 40.0%
AGTATCTTTGGTGAGCTATG+TGG - chr8.2:33911233-33911252 MS.gene008900:CDS 40.0%
ATGGAGTTCCGATTATTTGC+TGG + chr8.2:33911683-33911702 None:intergenic 40.0%
CTTAGTCCTTTACCTACACT+GGG - chr8.2:33911887-33911906 MS.gene008900:CDS 40.0%
GCTTAAAAACCTTGGATGTG+AGG + chr8.2:33911325-33911344 None:intergenic 40.0%
GTATCTTTGGTGAGCTATGT+GGG - chr8.2:33911234-33911253 MS.gene008900:CDS 40.0%
TATCTTTGGTGAGCTATGTG+GGG - chr8.2:33911235-33911254 MS.gene008900:CDS 40.0%
TTTCAGAGGATTCATGGAGA+TGG - chr8.2:33911268-33911287 MS.gene008900:CDS 40.0%
ACTCCATTGTCGATAGCTCT+CGG - chr8.2:33911696-33911715 MS.gene008900:intron 45.0%
AGCTGCAACATTACCGCATT+AGG + chr8.2:33911797-33911816 None:intergenic 45.0%
ATCTTTGGTGAGCTATGTGG+GGG - chr8.2:33911236-33911255 MS.gene008900:CDS 45.0%
GGATGTGAGGACCCTTTAAT+GGG + chr8.2:33911312-33911331 None:intergenic 45.0%
TGGATGTGAGGACCCTTTAA+TGG + chr8.2:33911313-33911332 None:intergenic 45.0%
TTAAAGGGTCCTCACATCCA+AGG - chr8.2:33911313-33911332 MS.gene008900:CDS 45.0%
! GATTTTGCTTTGCCCAGTGT+AGG + chr8.2:33911902-33911921 None:intergenic 45.0%
!! TGTAAAATATATTAAATAAT+AGG + chr8.2:33911104-33911123 None:intergenic 5.0%
GAGCTATGTGGGGGCAAATA+AGG - chr8.2:33911245-33911264 MS.gene008900:CDS 50.0%
GATACACACACCCACACCAA+GGG - chr8.2:33911405-33911424 MS.gene008900:CDS 50.0%
GCTTTGCCCAGTGTAGGTAA+AGG + chr8.2:33911896-33911915 None:intergenic 50.0%
GGGGGCAAATAAGGTTTCAG+AGG - chr8.2:33911254-33911273 MS.gene008900:CDS 50.0%
GTACCGAGAGCTATCGACAA+TGG + chr8.2:33911702-33911721 None:intergenic 50.0%
TGATACACACACCCACACCA+AGG - chr8.2:33911404-33911423 MS.gene008900:CDS 50.0%
AGCAAGGCTCGGGTTCTTGT+TGG - chr8.2:33911833-33911852 MS.gene008900:CDS 55.0%
TGATCAGCCAGAGAGCAGCA+AGG - chr8.2:33911817-33911836 MS.gene008900:CDS 55.0%
AGCCAGAGAGCAGCAAGGCT+CGG - chr8.2:33911822-33911841 MS.gene008900:CDS 60.0%
ACCCGAGCCTTGCTGCTCTC+TGG + chr8.2:33911827-33911846 None:intergenic 65.0%
GCCAGAGAGCAGCAAGGCTC+GGG - chr8.2:33911823-33911842 MS.gene008900:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 33911047 33912099 33911047 ID=MS.gene008900
chr8.2 mRNA 33911047 33912099 33911047 ID=MS.gene008900.t1;Parent=MS.gene008900
chr8.2 exon 33912060 33912099 33912060 ID=MS.gene008900.t1.exon1;Parent=MS.gene008900.t1
chr8.2 CDS 33912060 33912099 33912060 ID=cds.MS.gene008900.t1;Parent=MS.gene008900.t1
chr8.2 exon 33911812 33911929 33911812 ID=MS.gene008900.t1.exon2;Parent=MS.gene008900.t1
chr8.2 CDS 33911812 33911929 33911812 ID=cds.MS.gene008900.t1;Parent=MS.gene008900.t1
chr8.2 exon 33911047 33911584 33911047 ID=MS.gene008900.t1.exon3;Parent=MS.gene008900.t1
chr8.2 CDS 33911047 33911584 33911047 ID=cds.MS.gene008900.t1;Parent=MS.gene008900.t1
Gene Sequence

>MS.gene008900

ATGCAAATCCAAAACGACCAAAATTTAAATCAGGAAAAAGGTAAAGTATTGATTCCTATTATTTAATATATTTTACATATAAGTATATTTCATTGCATTAAAATAATTATTTTTTTTACATATATTAACTCCTTGTGACCTAAAATCATGTTGCCTTTCTTTTCTTGTAGAAAAAAATGATAATCAAGTATCTTTGGTGAGCTATGTGGGGGCAAATAAGGTTTCAGAGGATTCATGGAGATGGAGAAAATATGGACAAAAACCCATTAAAGGGTCCTCACATCCAAGGTTTTTAAGCATTCAAAACTCTAACGTTCACATATTTTTCCTTCTTATATTAAAACAATATTTGTTACTTGATACACACACCCACACCAAGGGTTTTAATTAGTGAACGCGTGCATTTTGATCATTCCCATTGCAAAGAGTTGCATTTAAATGTGACAAATATGGTCTTAGCAATGAATGATTTTGCAATCAATGAATGATTTTGCAATCAATGAATGATTTTGCAGAAGCTACTACAAATGTAGCAGTTCCAGTGATTGTTTAGCAAGAAAACAAGTGGAAAAAATAAAAGATGGAGATGACACTTATGAAGTGACATATCTAGGAGAACACAATCACAATAAACCAGCAAATAATCGGAACTCCATTGTCGATAGCTCTCGGTACATGTCACCAAAGTTTGAATCATCTGTTGATGGAGAAGCTAGATGTTTCACAAACATCATAAACTTGGGTTCTCCTAATGCGGTAATGTTGCAGCTTGATCAGCCAGAGAGCAGCAAGGCTCGGGTTCTTGTTGGTCAATCAAAAATCCCTGATCTAAAAACTGAACTTAGTCCTTTACCTACACTGGGCAAAGCAAAATCTCCCCAACATAATGAAGATTCCAATGTTTTTTCATATGAATCAGAAATCCCGTATACAGAAGCGAAATTTATTGAAAGCTTCAAAGAAGATGAAATTTTGATACCAAACATGACACCTATGTTAGAGGAATTCTTTTTGGATTTCAACAATGTCAATAGTTGTGCTCTATTCCATTAG
Protein sequence

>MS.gene008900.t1

MQIQNDQNLNQEKEKNDNQVSLVSYVGANKVSEDSWRWRKYGQKPIKGSSHPRSYYKCSSSSDCLARKQVEKIKDGDDTYEVTYLGEHNHNKPANNRNSIVDSSRYMSPKFESSVDGEARCFTNIINLGSPNAVMLQLDQPESSKARVLVGQSKIPDLKTELSPLPTLGKAKSPQHNEDSNVFSYESEIPYTEAKFIESFKEDEILIPNMTPMLEEFFLDFNNVNSCALFH