AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene008953

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene008953.t1 MTR_8g068210 97.345 339 7 2 1 338 1 338 0.0 677
MS.gene008953.t1 MTR_5g031440 50.000 338 94 16 32 338 43 336 1.28e-75 236
MS.gene008953.t1 MTR_2g096740 51.181 127 50 4 12 127 40 165 5.08e-32 121
MS.gene008953.t1 MTR_2g096740 52.066 121 48 3 16 127 61 180 7.12e-32 121
MS.gene008953.t1 MTR_4g088580 68.493 73 23 0 33 105 56 128 1.17e-31 122
MS.gene008953.t1 MTR_8g479350 66.667 78 25 1 32 108 68 145 5.10e-31 120
MS.gene008953.t1 MTR_4g063780 75.758 66 13 1 31 93 74 139 5.62e-30 117
MS.gene008953.t1 MTR_7g024670 56.044 91 30 1 16 96 51 141 1.73e-29 116
MS.gene008953.t1 MTR_8g027295 70.000 70 19 1 21 90 15 82 7.47e-29 112
MS.gene008953.t1 MTR_4g461080 42.941 170 75 6 28 187 25 182 9.51e-29 112
MS.gene008953.t1 MTR_3g091820 69.697 66 20 0 21 86 32 97 1.89e-28 112
MS.gene008953.t1 MTR_2g093220 64.935 77 24 1 13 86 18 94 2.29e-28 112
MS.gene008953.t1 MTR_2g014060 75.806 62 15 0 22 83 15 76 2.84e-28 112
MS.gene008953.t1 MTR_1g077600 69.697 66 20 0 21 86 32 97 3.89e-28 110
MS.gene008953.t1 MTR_7g059400 72.881 59 16 0 28 86 72 130 4.07e-28 112
MS.gene008953.t1 MTR_1g077600 69.697 66 20 0 21 86 32 97 4.66e-28 110
MS.gene008953.t1 MTR_3g077750 69.355 62 19 0 21 82 50 111 6.15e-28 111
MS.gene008953.t1 MTR_4g109980 84.615 52 8 0 31 82 39 90 7.69e-28 111
MS.gene008953.t1 MTR_4g022370 72.414 58 16 0 29 86 79 136 1.08e-27 111
MS.gene008953.t1 MTR_3g090430 66.667 69 23 0 20 88 39 107 1.43e-27 110
MS.gene008953.t1 MTR_1g056810 75.862 58 14 0 29 86 9 66 7.12e-27 107
MS.gene008953.t1 MTR_8g015840 74.545 55 14 0 32 86 20 74 4.81e-26 103
MS.gene008953.t1 MTR_2g014170 82.000 50 9 0 31 80 44 93 6.47e-26 105
MS.gene008953.t1 MTR_8g079060 72.727 55 15 0 32 86 29 83 1.38e-25 102
MS.gene008953.t1 MTR_2g059540 78.431 51 11 0 30 80 29 79 3.20e-25 101
MS.gene008953.t1 MTR_7g010950 57.534 73 31 0 11 83 114 186 5.41e-25 105
MS.gene008953.t1 MTR_4g082060 51.190 84 41 0 7 90 97 180 9.26e-25 104
MS.gene008953.t1 MTR_2g016030 50.575 87 41 1 25 109 38 124 1.28e-24 98.2
MS.gene008953.t1 MTR_6g027460 48.936 94 35 2 7 87 58 151 2.14e-24 102
MS.gene008953.t1 MTR_7g086780 55.000 80 30 1 14 87 75 154 2.46e-24 103
MS.gene008953.t1 MTR_6g027450 47.872 94 36 2 7 87 51 144 4.15e-24 100
MS.gene008953.t1 MTR_2g013370 63.492 63 22 1 26 88 40 101 5.44e-24 99.8
MS.gene008953.t1 MTR_4g089095 68.421 57 17 1 32 88 16 71 1.17e-23 98.6
MS.gene008953.t1 MTR_4g089095 68.421 57 17 1 32 88 50 105 1.20e-23 99.4
MS.gene008953.t1 MTR_5g041530 56.757 74 31 1 14 87 122 194 4.36e-23 99.0
MS.gene008953.t1 MTR_3g435480 49.412 85 37 1 7 85 105 189 9.04e-23 99.0
MS.gene008953.t1 MTR_8g044220 46.914 81 43 0 6 86 92 172 1.32e-22 98.2
MS.gene008953.t1 MTR_6g012450 48.889 90 41 2 20 104 124 213 1.62e-22 98.6
MS.gene008953.t1 MTR_5g041420 57.143 70 30 0 14 83 120 189 4.59e-22 95.1
MS.gene008953.t1 MTR_5g041380 46.914 81 35 1 13 85 100 180 2.62e-19 88.2
MS.gene008953.t1 MTR_5g041400 47.561 82 35 1 22 95 101 182 1.25e-18 86.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene008953.t1 AT5G65590 37.571 354 149 14 4 338 16 316 2.95e-56 186
MS.gene008953.t1 AT5G60200 47.059 119 53 2 14 122 35 153 3.50e-31 118
MS.gene008953.t1 AT1G51700 62.821 78 28 1 32 109 33 109 4.46e-31 116
MS.gene008953.t1 AT2G37590 75.000 60 15 0 29 88 86 145 4.46e-30 117
MS.gene008953.t1 AT5G60850 60.759 79 31 0 32 110 51 129 1.82e-29 115
MS.gene008953.t1 AT3G52440 59.551 89 29 1 29 110 22 110 2.48e-29 113
MS.gene008953.t1 AT1G07640 81.818 55 10 0 32 86 21 75 3.13e-29 114
MS.gene008953.t1 AT3G45610 61.538 78 29 1 9 86 18 94 4.55e-29 112
MS.gene008953.t1 AT1G07640 81.818 55 10 0 32 86 77 131 4.73e-29 114
MS.gene008953.t1 AT3G52440 59.551 89 29 1 29 110 41 129 4.75e-29 113
MS.gene008953.t1 AT1G07640 81.818 55 10 0 32 86 85 139 6.20e-29 114
MS.gene008953.t1 AT2G28810 81.132 53 10 0 31 83 76 128 8.38e-29 114
MS.gene008953.t1 AT3G21270 84.615 52 8 0 32 83 29 80 9.20e-29 110
MS.gene008953.t1 AT2G28510 54.639 97 39 1 34 130 50 141 9.26e-29 112
MS.gene008953.t1 AT3G55370 66.667 69 23 0 29 97 73 141 1.23e-28 113
MS.gene008953.t1 AT3G55370 66.667 69 23 0 29 97 73 141 1.26e-28 114
MS.gene008953.t1 AT2G28810 81.132 53 10 0 31 83 93 145 1.30e-28 113
MS.gene008953.t1 AT3G55370 66.667 69 23 0 29 97 118 186 1.80e-28 114
MS.gene008953.t1 AT5G66940 46.512 129 49 5 25 153 26 134 4.31e-28 109
MS.gene008953.t1 AT1G21340 63.380 71 24 1 23 91 27 97 5.03e-28 110
MS.gene008953.t1 AT5G02460 74.138 58 15 0 29 86 92 149 6.52e-28 112
MS.gene008953.t1 AT4G38000 80.357 56 11 0 31 86 40 95 7.01e-28 109
MS.gene008953.t1 AT4G24060 56.667 90 39 0 21 110 42 131 1.00e-27 111
MS.gene008953.t1 AT3G50410 71.429 63 17 1 24 86 23 84 1.65e-27 108
MS.gene008953.t1 AT1G28310 75.439 57 14 0 32 88 27 83 2.38e-27 109
MS.gene008953.t1 AT1G28310 75.439 57 14 0 32 88 51 107 3.48e-27 109
MS.gene008953.t1 AT4G21050 74.545 55 14 0 34 88 26 80 4.65e-27 106
MS.gene008953.t1 AT3G61850 71.831 71 15 2 23 93 55 120 4.78e-27 108
MS.gene008953.t1 AT3G61850 71.831 71 15 2 23 93 55 120 4.78e-27 108
MS.gene008953.t1 AT3G61850 71.831 71 15 2 23 93 67 132 5.60e-27 108
MS.gene008953.t1 AT3G61850 71.831 71 15 2 23 93 55 120 7.27e-27 108
MS.gene008953.t1 AT3G61850 71.831 71 15 2 23 93 67 132 9.03e-27 108
MS.gene008953.t1 AT5G62940 82.000 50 9 0 33 82 74 123 6.16e-26 107
MS.gene008953.t1 AT4G00940 79.630 54 11 0 34 87 70 123 9.84e-26 104
MS.gene008953.t1 AT4G00940 79.630 54 11 0 34 87 70 123 9.84e-26 104
MS.gene008953.t1 AT4G00940 79.630 54 11 0 34 87 70 123 9.84e-26 104
MS.gene008953.t1 AT1G64620 68.852 61 19 0 21 81 38 98 6.44e-25 103
MS.gene008953.t1 AT2G46590 73.333 60 14 1 20 79 58 115 1.06e-24 103
MS.gene008953.t1 AT2G46590 73.333 60 14 1 20 79 70 127 1.25e-24 103
MS.gene008953.t1 AT5G62430 41.818 110 64 0 2 111 24 133 1.24e-23 99.4
MS.gene008953.t1 AT4G21040 64.062 64 23 0 34 97 27 90 1.76e-23 97.4
MS.gene008953.t1 AT2G34140 57.143 70 28 1 18 85 42 111 2.21e-23 95.5
MS.gene008953.t1 AT3G47500 54.930 71 32 0 13 83 91 161 4.46e-23 99.8
MS.gene008953.t1 AT1G29160 56.716 67 29 0 19 85 49 115 1.50e-22 93.2
MS.gene008953.t1 AT1G26790 57.143 70 28 1 18 85 95 164 1.53e-22 97.4
MS.gene008953.t1 AT4G21080 73.077 52 14 0 34 85 27 78 4.63e-22 94.0
MS.gene008953.t1 AT5G39660 61.538 65 24 1 19 83 126 189 5.52e-22 96.7
MS.gene008953.t1 AT5G39660 61.538 65 24 1 19 83 126 189 5.52e-22 96.7
MS.gene008953.t1 AT5G39660 61.538 65 24 1 19 83 126 189 5.52e-22 96.7
MS.gene008953.t1 AT1G69570 67.925 53 17 0 31 83 131 183 7.40e-22 95.9
MS.gene008953.t1 AT1G47655 71.429 49 14 0 32 80 29 77 8.74e-22 92.0
MS.gene008953.t1 AT4G21030 51.515 66 29 2 34 97 23 87 3.80e-13 67.8

Find 58 sgRNAs with CRISPR-Local

Find 66 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCTTAGTGTTTGCATTAA+TGG 0.144786 8.2:-34702829 MS.gene008953:CDS
AATGGAGGTGGATTTATTAA+TGG 0.224509 8.2:-34703225 MS.gene008953:CDS
GAGAATTGGTTATAGTAAAA+TGG 0.242887 8.2:+34703354 None:intergenic
GGATATAAATTTAAACCATT+TGG 0.271968 8.2:+34703261 None:intergenic
GAAGAGAAAGGTAAGGATAA+AGG 0.309559 8.2:+34703381 None:intergenic
TCAAGATTCTGAAACAAAAT+AGG 0.312862 8.2:+34702976 None:intergenic
GCAAAACATGCAGAAGATAT+TGG 0.321728 8.2:-34703551 MS.gene008953:CDS
AACAATAACTGGATTAATAA+TGG 0.332855 8.2:-34702787 MS.gene008953:CDS
AATGGTGATCATGATCAAAA+TGG 0.333621 8.2:-34702811 MS.gene008953:CDS
ATCAAAATGGAAACAATAAC+TGG 0.351043 8.2:-34702798 MS.gene008953:CDS
GTATTGAATCATTGAGTTGT+AGG 0.351509 8.2:-34703116 MS.gene008953:CDS
CTTTAGGGCAAAGCAGTATA+TGG 0.356462 8.2:+34702730 None:intergenic
GGTGCAAGTGAATGGTTCTT+TGG 0.371222 8.2:-34702895 MS.gene008953:CDS
CCTTGTTTGAAGATAATAAC+AGG 0.384597 8.2:-34703050 MS.gene008953:CDS
TATCCTTTCCCTTCTTCAAA+TGG 0.389837 8.2:-34703243 MS.gene008953:CDS
TAATAATGGTGTTCATGCTT+GGG 0.391047 8.2:-34702773 MS.gene008953:CDS
CTCCACCAATGGAAGAGAAT+TGG 0.392888 8.2:+34703340 None:intergenic
AATTTAAACCATTTGGATCA+AGG 0.394686 8.2:+34703268 None:intergenic
TTCCCTTCTTCAAATGGAGG+TGG 0.398768 8.2:-34703237 MS.gene008953:CDS
GAAAGGTAAGGATAAAGGTA+AGG 0.431399 8.2:+34703386 None:intergenic
TTTCAAGTTGGTGGTGGTGC+TGG 0.445544 8.2:-34702934 MS.gene008953:CDS
TATAACCAATTCTCTTCCAT+TGG 0.446973 8.2:-34703345 MS.gene008953:CDS
TGCAGAAGATATTGGACAAA+TGG 0.451403 8.2:-34703543 MS.gene008953:CDS
AACCAATTCTCTTCCATTGG+TGG 0.456714 8.2:-34703342 MS.gene008953:CDS
AGCTTTCACCTTGATCCAAA+TGG 0.461423 8.2:-34703276 MS.gene008953:CDS
CTAAGATCAGTAGTTGTTGC+AGG 0.461438 8.2:+34702844 None:intergenic
TTAATAATGGTGTTCATGCT+TGG 0.476692 8.2:-34702774 MS.gene008953:CDS
TTTCAGAAGAAGAACCTTGT+TGG 0.487451 8.2:+34703685 None:intergenic
GGAAATGAAAATGCAATTCA+AGG 0.492654 8.2:-34703201 MS.gene008953:CDS
ATCATTGAGTTGTAGGAACC+AGG 0.495806 8.2:-34703109 MS.gene008953:CDS
AATCCACCTCCATTTGAAGA+AGG 0.498975 8.2:+34703234 None:intergenic
GTGTTTGGAGAATCACATCT+TGG 0.505256 8.2:+34703624 None:intergenic
GGAAAGAAGGTGCAAGTGAA+TGG 0.511820 8.2:-34702903 MS.gene008953:CDS
GGAGGTGGATTTATTAATGG+TGG 0.512038 8.2:-34703222 MS.gene008953:CDS
GAAGCTTCAAATGCAAATCC+TGG 0.518207 8.2:+34703091 None:intergenic
TTGCGTAACGTTCCGATAGG+TGG 0.519722 8.2:-34703513 MS.gene008953:CDS
TTCTGAAACAAAATAGGTTG+AGG 0.522960 8.2:+34702982 None:intergenic
GTGGTGGTGCTGGTGATTCA+AGG 0.525382 8.2:-34702924 MS.gene008953:CDS
CCTTTCCCTTCTTCAAATGG+AGG 0.533783 8.2:-34703240 MS.gene008953:CDS
TCAGAATCTTGAGATTTCAA+AGG 0.543309 8.2:-34702965 MS.gene008953:CDS
GCTGAGATGTTTCAAGTTGG+TGG 0.546166 8.2:-34702943 MS.gene008953:CDS
GATAATAACAGGAAAGAGAG+TGG 0.551054 8.2:-34703039 MS.gene008953:CDS
CGTAACGTTCCGATAGGTGG+TGG 0.551463 8.2:-34703510 MS.gene008953:CDS
CCTGTTATTATCTTCAAACA+AGG 0.552716 8.2:+34703050 None:intergenic
ATCCACCTCCATTTGAAGAA+GGG 0.555981 8.2:+34703235 None:intergenic
TTTCTGCAACCACCACCTAT+CGG 0.561402 8.2:+34703501 None:intergenic
AAAGGTAAGGATAAAGGTAA+GGG 0.562387 8.2:+34703387 None:intergenic
GAGATGTTTCAAGTTGGTGG+TGG 0.563036 8.2:-34702940 MS.gene008953:CDS
TGAACTTGAAACTCCACCAA+TGG 0.581179 8.2:+34703329 None:intergenic
AAGGCTGAGATGTTTCAAGT+TGG 0.583200 8.2:-34702946 MS.gene008953:CDS
TACTTATTAATAGCTTGAGA+TGG 0.589744 8.2:+34703450 None:intergenic
CCAAGATGAAAATCAAGAGA+AGG 0.593558 8.2:+34703417 None:intergenic
GCTGGTGATTCAAGGAAAGA+AGG 0.609961 8.2:-34702916 MS.gene008953:CDS
AATAATGGTGTTCATGCTTG+GGG 0.619834 8.2:-34702772 MS.gene008953:CDS
CCTCCATTTGAAGAAGGGAA+AGG 0.627858 8.2:+34703240 None:intergenic
TCGTTGCGTAACGTTCCGAT+AGG 0.633139 8.2:-34703516 MS.gene008953:CDS
AGAAGATATTGGACAAATGG+TGG 0.635966 8.2:-34703540 MS.gene008953:CDS
CAAGATCATGAAAACCAACA+AGG 0.656147 8.2:-34703699 MS.gene008953:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAATAACTGGATTAATAA+TGG - chr8.2:34703671-34703690 MS.gene008953:CDS 20.0%
!! GGATATAAATTTAAACCATT+TGG + chr8.2:34703200-34703219 None:intergenic 20.0%
! AATTTAAACCATTTGGATCA+AGG + chr8.2:34703193-34703212 None:intergenic 25.0%
! ATCAAAATGGAAACAATAAC+TGG - chr8.2:34703660-34703679 MS.gene008953:CDS 25.0%
! GAGAATTGGTTATAGTAAAA+TGG + chr8.2:34703107-34703126 None:intergenic 25.0%
! TACTTATTAATAGCTTGAGA+TGG + chr8.2:34703011-34703030 None:intergenic 25.0%
!! TAGTAACAGAATTTTGTGTT+TGG + chr8.2:34702852-34702871 None:intergenic 25.0%
!! TTTTTGTTGATCTGTTATCT+TGG + chr8.2:34702799-34702818 None:intergenic 25.0%
!!! TAAAATGGTTTTGAAGAGAA+AGG + chr8.2:34703092-34703111 None:intergenic 25.0%
!!! TCAAGATTCTGAAACAAAAT+AGG + chr8.2:34703485-34703504 None:intergenic 25.0%
AAAGGTAAGGATAAAGGTAA+GGG + chr8.2:34703074-34703093 None:intergenic 30.0%
AATGGTGATCATGATCAAAA+TGG - chr8.2:34703647-34703666 MS.gene008953:CDS 30.0%
CCTGTTATTATCTTCAAACA+AGG + chr8.2:34703411-34703430 None:intergenic 30.0%
GATCTTAGTGTTTGCATTAA+TGG - chr8.2:34703629-34703648 MS.gene008953:CDS 30.0%
GGAAATGAAAATGCAATTCA+AGG - chr8.2:34703257-34703276 MS.gene008953:CDS 30.0%
TAATAATGGTGTTCATGCTT+GGG - chr8.2:34703685-34703704 MS.gene008953:CDS 30.0%
TATAACCAATTCTCTTCCAT+TGG - chr8.2:34703113-34703132 MS.gene008953:CDS 30.0%
TCAGAATCTTGAGATTTCAA+AGG - chr8.2:34703493-34703512 MS.gene008953:CDS 30.0%
TTAATAATGGTGTTCATGCT+TGG - chr8.2:34703684-34703703 MS.gene008953:CDS 30.0%
! AATGGAGGTGGATTTATTAA+TGG - chr8.2:34703233-34703252 MS.gene008953:CDS 30.0%
! CCTTGTTTGAAGATAATAAC+AGG - chr8.2:34703408-34703427 MS.gene008953:CDS 30.0%
! GTATTGAATCATTGAGTTGT+AGG - chr8.2:34703342-34703361 MS.gene008953:CDS 30.0%
!! GAATTCTTTTTCATCTGTGA+TGG - chr8.2:34703589-34703608 MS.gene008953:CDS 30.0%
!! TCTTGTGTGTTTTTGTGATT+TGG + chr8.2:34702744-34702763 None:intergenic 30.0%
!! TTCTGAAACAAAATAGGTTG+AGG + chr8.2:34703479-34703498 None:intergenic 30.0%
AATAATGGTGTTCATGCTTG+GGG - chr8.2:34703686-34703705 MS.gene008953:CDS 35.0%
AGAAGATATTGGACAAATGG+TGG - chr8.2:34702918-34702937 MS.gene008953:CDS 35.0%
CAAGATCATGAAAACCAACA+AGG - chr8.2:34702759-34702778 MS.gene008953:CDS 35.0%
CCAAGATGAAAATCAAGAGA+AGG + chr8.2:34703044-34703063 None:intergenic 35.0%
GAAAGGTAAGGATAAAGGTA+AGG + chr8.2:34703075-34703094 None:intergenic 35.0%
GAAGAGAAAGGTAAGGATAA+AGG + chr8.2:34703080-34703099 None:intergenic 35.0%
GATAATAACAGGAAAGAGAG+TGG - chr8.2:34703419-34703438 MS.gene008953:CDS 35.0%
GCAAAACATGCAGAAGATAT+TGG - chr8.2:34702907-34702926 MS.gene008953:CDS 35.0%
TATCCTTTCCCTTCTTCAAA+TGG - chr8.2:34703215-34703234 MS.gene008953:CDS 35.0%
TGCAGAAGATATTGGACAAA+TGG - chr8.2:34702915-34702934 MS.gene008953:CDS 35.0%
TTTCAGAAGAAGAACCTTGT+TGG + chr8.2:34702776-34702795 None:intergenic 35.0%
! CATGTTTTGCAGAAATGTCT+TGG + chr8.2:34702897-34702916 None:intergenic 35.0%
! CCTTCTCTTGATTTTCATCT+TGG - chr8.2:34703041-34703060 MS.gene008953:CDS 35.0%
!!! TGGTTTTGAAGAGAAAGGTA+AGG + chr8.2:34703087-34703106 None:intergenic 35.0%
AACCAATTCTCTTCCATTGG+TGG - chr8.2:34703116-34703135 MS.gene008953:CDS 40.0%
AATCCACCTCCATTTGAAGA+AGG + chr8.2:34703227-34703246 None:intergenic 40.0%
AGCTTTCACCTTGATCCAAA+TGG - chr8.2:34703182-34703201 MS.gene008953:CDS 40.0%
ATCCACCTCCATTTGAAGAA+GGG + chr8.2:34703226-34703245 None:intergenic 40.0%
CTAAGATCAGTAGTTGTTGC+AGG + chr8.2:34703617-34703636 None:intergenic 40.0%
GAAGCTTCAAATGCAAATCC+TGG + chr8.2:34703370-34703389 None:intergenic 40.0%
GTGTTTGGAGAATCACATCT+TGG + chr8.2:34702837-34702856 None:intergenic 40.0%
TGAACTTGAAACTCCACCAA+TGG + chr8.2:34703132-34703151 None:intergenic 40.0%
! AAGGCTGAGATGTTTCAAGT+TGG - chr8.2:34703512-34703531 MS.gene008953:CDS 40.0%
! ATCATTGAGTTGTAGGAACC+AGG - chr8.2:34703349-34703368 MS.gene008953:CDS 40.0%
! GGAGGTGGATTTATTAATGG+TGG - chr8.2:34703236-34703255 MS.gene008953:CDS 40.0%
! TGGAACTGTTTTGCTTTCTC+AGG - chr8.2:34703439-34703458 MS.gene008953:CDS 40.0%
CCTCCATTTGAAGAAGGGAA+AGG + chr8.2:34703221-34703240 None:intergenic 45.0%
CCTTTCCCTTCTTCAAATGG+AGG - chr8.2:34703218-34703237 MS.gene008953:CDS 45.0%
CTCCACCAATGGAAGAGAAT+TGG + chr8.2:34703121-34703140 None:intergenic 45.0%
GCTGGTGATTCAAGGAAAGA+AGG - chr8.2:34703542-34703561 MS.gene008953:CDS 45.0%
GGTGCAAGTGAATGGTTCTT+TGG - chr8.2:34703563-34703582 MS.gene008953:CDS 45.0%
TTCCCTTCTTCAAATGGAGG+TGG - chr8.2:34703221-34703240 MS.gene008953:CDS 45.0%
TTTCTGCAACCACCACCTAT+CGG + chr8.2:34702960-34702979 None:intergenic 45.0%
! GGAAAGAAGGTGCAAGTGAA+TGG - chr8.2:34703555-34703574 MS.gene008953:CDS 45.0%
!! GAGATGTTTCAAGTTGGTGG+TGG - chr8.2:34703518-34703537 MS.gene008953:CDS 45.0%
!! GCTGAGATGTTTCAAGTTGG+TGG - chr8.2:34703515-34703534 MS.gene008953:CDS 45.0%
TCGTTGCGTAACGTTCCGAT+AGG - chr8.2:34702942-34702961 MS.gene008953:CDS 50.0%
TTGCGTAACGTTCCGATAGG+TGG - chr8.2:34702945-34702964 MS.gene008953:CDS 50.0%
!! TTTCAAGTTGGTGGTGGTGC+TGG - chr8.2:34703524-34703543 MS.gene008953:CDS 50.0%
CGTAACGTTCCGATAGGTGG+TGG - chr8.2:34702948-34702967 MS.gene008953:CDS 55.0%
!! GTGGTGGTGCTGGTGATTCA+AGG - chr8.2:34703534-34703553 MS.gene008953:CDS 55.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 34702732 34703748 34702732 ID=MS.gene008953
chr8.2 mRNA 34702732 34703748 34702732 ID=MS.gene008953.t1;Parent=MS.gene008953
chr8.2 exon 34702732 34703748 34702732 ID=MS.gene008953.t1.exon1;Parent=MS.gene008953.t1
chr8.2 CDS 34702732 34703748 34702732 ID=cds.MS.gene008953.t1;Parent=MS.gene008953.t1
Gene Sequence

>MS.gene008953

ATGGTAGCACCAAATCACAAAAACACACAAGATCATGAAAACCAACAAGGTTCTTCTTCTGAAACCAAGATAACAGATCAACAAAAAGTTGTAGTAAAATGTCCAAGATGTGATTCTCCAAACACAAAATTCTGTTACTACAACAACTACAGTCTCACTCAACCAAGACATTTCTGCAAAACATGCAGAAGATATTGGACAAATGGTGGATCGTTGCGTAACGTTCCGATAGGTGGTGGTTGCAGAAAGAAACAAAAACTCAAACACTCATCTACACCATCTCAAGCTATTAATAAGTACTCATCTTCACCTTCTCTTGATTTTCATCTTGGTTCTTTACCCTTACCTTTATCCTTACCTTTCTCTTCAAAACCATTTTACTATAACCAATTCTCTTCCATTGGTGGAGTTTCAAGTTCAAACACTTGTGTTTCTACAACAAGTGCTTCAAGCTTTCACCTTGATCCAAATGGTTTAAATTTATATCCTTTCCCTTCTTCAAATGGAGGTGGATTTATTAATGGTGGAAATGAAAATGCAATTCAAGGAATGAACTTTATGAATGTGAGTACTAGTGCTAATAATGCTAATTGCACTAGTCTTGCTTCTAGTATTGAATCATTGAGTTGTAGGAACCAGGATTTGCATTTGAAGCTTCAGCAGCAGAGATTAGCAACCTTGTTTGAAGATAATAACAGGAAAGAGAGTGGAACTGTTTTGCTTTCTCAGGTTAGCATTGAAAAGCCTCAACCTATTTTGTTTCAGAATCTTGAGATTTCAAAGGCTGAGATGTTTCAAGTTGGTGGTGGTGCTGGTGATTCAAGGAAAGAAGGTGCAAGTGAATGGTTCTTTGGTATGAATTCTTTTTCATCTGTGATGGCTCCTGCAACAACTACTGATCTTAGTGTTTGCATTAATGGTGATCATGATCAAAATGGAAACAATAACTGGATTAATAATGGTGTTCATGCTTGGGGTGATGTGCAGCAGCAGCAGCCATATACTGCTTTGCCCTAA
Protein sequence

>MS.gene008953.t1

MVAPNHKNTQDHENQQGSSSETKITDQQKVVVKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTNGGSLRNVPIGGGCRKKQKLKHSSTPSQAINKYSSSPSLDFHLGSLPLPLSLPFSSKPFYYNQFSSIGGVSSSNTCVSTTSASSFHLDPNGLNLYPFPSSNGGGFINGGNENAIQGMNFMNVSTSANNANCTSLASSIESLSCRNQDLHLKLQQQRLATLFEDNNRKESGTVLLSQVSIEKPQPILFQNLEISKAEMFQVGGGAGDSRKEGASEWFFGMNSFSSVMAPATTTDLSVCINGDHDQNGNNNWINNGVHAWGDVQQQQPYTALP