AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene008978

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene008978.t1 MTR_8g067650 88.325 197 21 2 1 195 243 439 4.15e-123 358
MS.gene008978.t1 MTR_8g067635 87.755 196 23 1 1 195 253 448 2.56e-122 357
MS.gene008978.t1 MTR_2g024380 47.196 214 82 3 1 213 184 367 1.43e-56 186
MS.gene008978.t1 MTR_8g069935 58.182 165 68 1 1 164 234 398 2.29e-55 183
MS.gene008978.t1 MTR_2g024350 59.677 124 50 0 90 213 1 124 1.32e-48 159
MS.gene008978.t1 MTR_6g053200 43.519 216 100 3 1 216 248 441 1.76e-48 166
MS.gene008978.t1 MTR_7g104980 57.576 99 42 0 118 216 18 116 6.89e-30 110
MS.gene008978.t1 MTR_1g099600 47.917 96 49 1 77 172 165 259 3.02e-26 103
MS.gene008978.t1 MTR_7g079040 47.368 95 49 1 75 169 132 225 2.05e-23 95.9
MS.gene008978.t1 MTR_8g028565 48.421 95 48 1 75 169 133 226 2.61e-23 95.9
MS.gene008978.t1 MTR_7g105000 42.017 119 63 3 1 117 226 340 1.19e-21 91.7
MS.gene008978.t1 MTR_8g098945 58.333 72 29 1 98 169 130 200 2.06e-21 89.7
MS.gene008978.t1 MTR_7g109600 42.593 108 57 1 56 158 7 114 1.23e-19 84.7
MS.gene008978.t1 MTR_4g094908 48.193 83 42 1 83 165 253 334 3.74e-18 81.6
MS.gene008978.t1 MTR_2g032030 46.835 79 41 1 95 173 265 342 4.48e-18 82.0
MS.gene008978.t1 MTR_2g032030 46.835 79 41 1 95 173 265 342 8.58e-18 81.6
MS.gene008978.t1 MTR_1g070455 51.765 85 36 2 79 159 276 359 9.34e-18 80.9
MS.gene008978.t1 MTR_5g016610 52.778 72 33 1 83 154 186 256 1.46e-17 79.3
MS.gene008978.t1 MTR_4g127040 51.316 76 36 1 79 154 228 302 1.65e-17 79.7
MS.gene008978.t1 MTR_7g080020 46.067 89 46 2 87 175 270 356 7.61e-17 79.0
MS.gene008978.t1 MTR_7g080020 40.625 96 55 2 86 180 481 575 1.54e-14 72.4
MS.gene008978.t1 MTR_2g016770 55.000 60 27 0 98 157 36 95 7.70e-17 76.3
MS.gene008978.t1 MTR_2g083870 56.667 60 26 0 98 157 81 140 8.44e-17 77.0
MS.gene008978.t1 MTR_2g016770 55.000 60 27 0 98 157 28 87 9.10e-17 75.9
MS.gene008978.t1 MTR_8g087000 51.613 62 30 0 98 159 78 139 1.02e-16 76.6
MS.gene008978.t1 MTR_7g100510 41.964 112 63 2 82 193 174 283 1.09e-16 78.2
MS.gene008978.t1 MTR_7g100510 42.105 76 43 1 98 173 362 436 8.12e-15 72.8
MS.gene008978.t1 MTR_8g087000 51.613 62 30 0 98 159 77 138 1.27e-16 76.3
MS.gene008978.t1 MTR_1g009613 45.055 91 46 2 79 166 245 334 2.05e-16 77.0
MS.gene008978.t1 MTR_7g011820 41.121 107 50 3 65 160 185 289 2.73e-16 77.0
MS.gene008978.t1 MTR_7g011820 54.098 61 27 1 98 158 411 470 2.24e-15 74.7
MS.gene008978.t1 MTR_7g080000 42.105 95 53 2 87 181 224 316 3.51e-16 77.0
MS.gene008978.t1 MTR_7g080000 48.438 64 32 1 95 158 430 492 2.24e-13 68.9
MS.gene008978.t1 MTR_3g108960 47.561 82 38 2 77 154 291 371 1.20e-15 75.1
MS.gene008978.t1 MTR_4g082580 38.542 96 53 2 97 192 278 367 1.35e-15 74.7
MS.gene008978.t1 MTR_4g082580 44.286 70 38 1 88 157 136 204 3.43e-13 67.8
MS.gene008978.t1 MTR_5g097490 50.725 69 30 3 93 160 88 153 2.06e-15 74.3
MS.gene008978.t1 MTR_5g097490 43.836 73 40 1 86 158 241 312 2.41e-12 65.5
MS.gene008978.t1 MTR_3g009470 42.718 103 55 4 66 168 251 349 2.18e-15 74.7
MS.gene008978.t1 MTR_3g009470 48.438 64 32 1 95 158 493 555 1.81e-13 68.9
MS.gene008978.t1 MTR_7g071120 51.389 72 33 2 89 160 158 227 3.58e-15 73.9
MS.gene008978.t1 MTR_7g071120 46.875 64 33 1 95 158 322 384 3.73e-11 62.0
MS.gene008978.t1 MTR_3g009470 42.718 103 55 4 66 168 251 349 4.25e-15 73.6
MS.gene008978.t1 MTR_3g056100 52.941 68 30 2 90 157 236 301 5.48e-15 73.6
MS.gene008978.t1 MTR_3g056100 44.928 69 37 1 95 163 400 467 5.13e-13 67.8
MS.gene008978.t1 MTR_3g056100 52.941 68 30 2 90 157 236 301 5.62e-15 73.6
MS.gene008978.t1 MTR_3g056100 44.928 69 37 1 95 163 413 480 5.26e-13 67.8
MS.gene008978.t1 MTR_3g056100 52.941 68 30 2 90 157 92 157 5.93e-15 73.2
MS.gene008978.t1 MTR_3g056100 44.928 69 37 1 95 163 256 323 5.88e-13 67.4
MS.gene008978.t1 MTR_3g056100 52.941 68 30 2 90 157 92 157 6.12e-15 73.2
MS.gene008978.t1 MTR_3g056100 44.928 69 37 1 95 163 269 336 6.39e-13 67.4
MS.gene008978.t1 MTR_0117s0040 35.556 135 80 4 83 211 61 194 6.36e-15 71.6
MS.gene008978.t1 MTR_5g042920 46.667 75 39 1 98 172 321 394 9.37e-15 72.8
MS.gene008978.t1 MTR_5g042920 45.977 87 45 2 88 174 142 226 1.92e-13 68.9
MS.gene008978.t1 MTR_4g130900 49.206 63 31 1 95 157 357 418 1.24e-14 72.4
MS.gene008978.t1 MTR_5g091390 50.000 62 30 1 97 158 157 217 2.83e-14 70.5
MS.gene008978.t1 MTR_1g086790 36.667 90 55 2 77 166 139 226 7.12e-14 69.7
MS.gene008978.t1 MTR_4g094588 43.210 81 41 2 97 177 178 253 7.30e-14 69.7
MS.gene008978.t1 MTR_3g031220 52.308 65 29 2 96 160 197 259 7.41e-14 69.7
MS.gene008978.t1 MTR_3g031220 52.308 65 29 2 96 160 197 259 7.79e-14 70.1
MS.gene008978.t1 MTR_3g031220 46.875 64 33 1 95 158 363 425 7.65e-12 64.3
MS.gene008978.t1 MTR_7g062220 47.368 76 39 1 79 154 106 180 1.16e-13 68.9
MS.gene008978.t1 MTR_4g007060 34.783 115 67 2 95 209 126 232 1.44e-13 68.2
MS.gene008978.t1 MTR_5g074400 53.226 62 27 2 96 157 242 301 1.50e-13 69.3
MS.gene008978.t1 MTR_5g074400 50.000 64 31 1 95 158 418 480 4.84e-13 67.8
MS.gene008978.t1 MTR_2g105060 36.449 107 59 1 95 192 92 198 1.71e-13 67.8
MS.gene008978.t1 MTR_5g094430 53.226 62 27 2 96 157 199 258 2.35e-13 68.6
MS.gene008978.t1 MTR_5g094430 46.875 64 33 1 95 158 362 424 4.35e-13 67.8
MS.gene008978.t1 MTR_4g007060 34.783 115 67 2 95 209 160 266 2.51e-13 67.8
MS.gene008978.t1 MTR_5g094430 53.226 62 27 2 96 157 87 146 2.81e-13 68.2
MS.gene008978.t1 MTR_5g094430 46.875 64 33 1 95 158 250 312 6.01e-13 67.4
MS.gene008978.t1 MTR_3g095040 44.118 68 37 1 94 161 115 181 2.82e-13 66.2
MS.gene008978.t1 MTR_5g094430 53.226 62 27 2 96 157 65 124 2.87e-13 68.2
MS.gene008978.t1 MTR_5g094430 46.875 64 33 1 95 158 228 290 5.80e-13 67.4
MS.gene008978.t1 MTR_7g109800 37.079 89 54 2 77 165 126 212 3.88e-13 67.4
MS.gene008978.t1 MTR_2g105060 46.875 64 34 0 95 158 167 230 4.21e-13 67.4
MS.gene008978.t1 MTR_2g045360 45.000 60 33 0 98 157 212 271 9.25e-13 66.6
MS.gene008978.t1 MTR_7g079010 36.667 90 54 2 67 154 109 197 1.04e-12 65.1
MS.gene008978.t1 MTR_2g033820 47.541 61 31 1 98 158 204 263 1.39e-12 66.2
MS.gene008978.t1 MTR_3g106060 48.276 58 30 0 97 154 138 195 1.64e-12 65.5
MS.gene008978.t1 MTR_1g013790 44.776 67 37 0 95 161 99 165 3.86e-12 63.9
MS.gene008978.t1 MTR_3g093830 36.207 116 54 4 66 168 103 211 3.88e-12 64.7
MS.gene008978.t1 MTR_4g013260 47.619 63 32 1 95 157 334 395 4.50e-12 64.7
MS.gene008978.t1 MTR_4g013260 32.759 116 62 2 57 157 129 243 7.78e-12 64.3
MS.gene008978.t1 MTR_5g043880 37.931 87 52 2 68 154 96 180 7.77e-12 63.5
MS.gene008978.t1 MTR_3g053330 38.667 75 45 1 83 157 238 311 8.21e-12 63.9
MS.gene008978.t1 MTR_8g007270 44.928 69 36 2 95 163 152 218 9.75e-12 62.4
MS.gene008978.t1 MTR_1g077780 35.802 81 50 2 83 163 49 127 1.22e-11 60.8
MS.gene008978.t1 MTR_4g122530 40.000 75 43 2 83 157 195 267 1.77e-11 63.2
MS.gene008978.t1 MTR_8g092010 45.312 64 34 1 94 157 105 167 3.59e-11 60.1
MS.gene008978.t1 MTR_1g013760 47.368 57 30 0 98 154 141 197 3.95e-11 61.6
MS.gene008978.t1 MTR_3g090860 41.333 75 38 2 98 170 134 204 3.95e-11 61.6
MS.gene008978.t1 MTR_5g067680 48.276 58 28 1 97 152 202 259 4.40e-11 61.6
MS.gene008978.t1 MTR_7g028415 37.662 77 45 2 95 169 91 166 4.96e-11 59.7
MS.gene008978.t1 MTR_7g028710 37.662 77 45 2 95 169 91 166 4.96e-11 59.7
MS.gene008978.t1 MTR_8g099350 44.828 58 30 1 97 152 132 189 6.20e-11 61.2
MS.gene008978.t1 MTR_4g052030 50.000 60 18 1 95 154 3 50 6.53e-11 56.2
MS.gene008978.t1 MTR_2g023930 38.667 75 45 1 83 157 292 365 7.28e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene008978.t1 AT4G01250 37.736 159 82 4 16 174 63 204 2.01e-26 103
MS.gene008978.t1 AT5G52830 45.833 96 51 1 77 172 145 239 9.77e-24 97.1
MS.gene008978.t1 AT4G23550 47.312 93 48 1 81 173 124 215 1.61e-22 93.2
MS.gene008978.t1 AT5G45050 42.857 98 56 0 61 158 1116 1213 2.10e-20 89.4
MS.gene008978.t1 AT5G45050 42.857 98 56 0 61 158 1144 1241 2.12e-20 89.4
MS.gene008978.t1 AT5G45050 42.857 98 56 0 61 158 1005 1102 2.28e-20 89.4
MS.gene008978.t1 AT4G31550 48.889 90 41 2 77 162 222 310 4.20e-18 81.6
MS.gene008978.t1 AT4G31550 45.652 92 49 1 71 162 221 311 6.33e-18 80.9
MS.gene008978.t1 AT2G24570 51.282 78 37 1 77 154 224 300 1.05e-17 80.5
MS.gene008978.t1 AT2G34830 52.381 63 30 0 95 157 213 275 3.09e-17 79.7
MS.gene008978.t1 AT2G34830 52.381 63 30 0 95 157 222 284 3.67e-17 79.7
MS.gene008978.t1 AT5G28650 51.282 78 37 1 79 156 245 321 4.19e-17 79.0
MS.gene008978.t1 AT5G07100 43.011 93 49 2 90 179 17 108 5.74e-17 76.6
MS.gene008978.t1 AT5G07100 46.875 64 33 1 95 158 139 201 2.42e-13 67.0
MS.gene008978.t1 AT5G07100 43.011 93 49 2 90 179 17 108 5.74e-17 76.6
MS.gene008978.t1 AT5G07100 46.875 64 33 1 95 158 139 201 2.42e-13 67.0
MS.gene008978.t1 AT5G07100 43.011 93 49 2 90 179 17 108 5.74e-17 76.6
MS.gene008978.t1 AT5G07100 46.875 64 33 1 95 158 139 201 2.42e-13 67.0
MS.gene008978.t1 AT5G07100 43.011 93 49 2 90 179 17 108 5.74e-17 76.6
MS.gene008978.t1 AT5G07100 46.875 64 33 1 95 158 139 201 2.42e-13 67.0
MS.gene008978.t1 AT3G04670 51.282 78 37 1 79 156 245 321 6.37e-17 78.2
MS.gene008978.t1 AT4G24240 54.167 72 32 1 83 154 268 338 6.65e-17 78.6
MS.gene008978.t1 AT3G58710 50.000 66 33 0 98 163 71 136 7.00e-17 77.4
MS.gene008978.t1 AT3G58710 50.000 66 33 0 98 163 72 137 7.09e-17 77.4
MS.gene008978.t1 AT1G29280 55.000 60 27 0 98 157 75 134 7.62e-17 77.0
MS.gene008978.t1 AT5G07100 43.011 93 49 2 90 179 110 201 8.42e-17 77.8
MS.gene008978.t1 AT5G07100 46.875 64 33 1 95 158 232 294 2.62e-13 67.8
MS.gene008978.t1 AT2G23320 52.308 65 31 0 90 154 233 297 8.64e-17 77.8
MS.gene008978.t1 AT1G30650 52.381 63 30 0 95 157 215 277 1.16e-16 78.2
MS.gene008978.t1 AT2G30250 39.844 128 57 7 47 157 100 224 3.36e-16 76.6
MS.gene008978.t1 AT2G30250 50.820 61 29 1 98 158 329 388 7.29e-13 67.0
MS.gene008978.t1 AT2G30590 53.030 66 31 0 91 156 307 372 7.85e-16 75.5
MS.gene008978.t1 AT2G03340 50.000 66 32 1 98 163 416 480 2.30e-15 74.7
MS.gene008978.t1 AT2G03340 46.237 93 42 4 92 178 245 335 5.40e-14 70.5
MS.gene008978.t1 AT4G26440 50.685 73 34 2 96 168 177 247 2.69e-15 74.3
MS.gene008978.t1 AT4G26440 47.945 73 37 1 95 167 370 441 5.97e-15 73.6
MS.gene008978.t1 AT3G01080 53.333 60 27 1 98 157 345 403 4.40e-15 73.6
MS.gene008978.t1 AT3G01080 42.697 89 42 3 93 174 201 287 1.75e-14 72.0
MS.gene008978.t1 AT3G01080 53.333 60 27 1 98 157 307 365 4.60e-15 73.6
MS.gene008978.t1 AT3G01080 42.697 89 42 3 93 174 163 249 1.68e-14 72.0
MS.gene008978.t1 AT2G04880 41.414 99 57 1 59 157 269 366 6.84e-15 73.2
MS.gene008978.t1 AT2G04880 44.615 65 34 2 93 157 107 169 1.51e-11 63.5
MS.gene008978.t1 AT2G04880 41.414 99 57 1 59 157 245 342 7.24e-15 73.2
MS.gene008978.t1 AT2G04880 37.000 100 58 3 93 192 107 201 6.57e-12 64.3
MS.gene008978.t1 AT3G01080 42.697 89 42 3 93 174 201 287 9.00e-15 72.0
MS.gene008978.t1 AT1G13960 42.222 90 44 4 75 159 203 289 1.22e-14 72.4
MS.gene008978.t1 AT1G13960 50.000 60 29 1 98 157 410 468 9.01e-14 70.1
MS.gene008978.t1 AT1G13960 42.222 90 44 4 75 159 50 136 1.53e-14 71.6
MS.gene008978.t1 AT1G13960 50.000 60 29 1 98 157 257 315 9.54e-14 69.3
MS.gene008978.t1 AT5G41570 32.609 138 80 4 44 177 51 179 1.58e-14 69.3
MS.gene008978.t1 AT2G38470 50.000 78 34 4 81 157 169 242 3.01e-14 71.2
MS.gene008978.t1 AT2G38470 48.438 64 32 1 95 158 360 422 3.10e-13 68.2
MS.gene008978.t1 AT5G56270 41.346 104 56 3 96 196 272 373 4.94e-14 70.9
MS.gene008978.t1 AT5G56270 48.438 64 32 1 95 158 485 547 2.74e-13 68.6
MS.gene008978.t1 AT4G30935 40.698 86 44 3 74 158 312 391 1.20e-13 69.3
MS.gene008978.t1 AT4G18170 39.759 83 48 2 77 159 153 233 1.28e-13 68.9
MS.gene008978.t1 AT1G64000 40.506 79 46 1 76 154 93 170 1.31e-13 67.0
MS.gene008978.t1 AT2G37260 50.746 67 31 2 92 158 160 224 1.91e-13 68.9
MS.gene008978.t1 AT2G37260 41.463 82 42 3 77 154 326 405 4.89e-13 67.8
MS.gene008978.t1 AT2G47260 40.741 81 46 2 77 157 155 233 2.01e-13 68.6
MS.gene008978.t1 AT2G37260 50.746 67 31 2 92 158 78 142 2.29e-13 68.2
MS.gene008978.t1 AT2G37260 41.463 82 42 3 77 154 244 323 5.63e-13 67.4
MS.gene008978.t1 AT2G37260 50.746 67 31 2 92 158 80 144 2.34e-13 68.2
MS.gene008978.t1 AT2G37260 41.463 82 42 3 77 154 246 325 5.41e-13 67.4
MS.gene008978.t1 AT1G55600 51.667 60 28 1 98 157 308 366 2.56e-13 68.6
MS.gene008978.t1 AT4G31800 41.573 89 48 2 97 185 111 195 2.98e-13 67.0
MS.gene008978.t1 AT1G80840 43.750 64 36 0 95 158 144 207 4.58e-13 67.0
MS.gene008978.t1 AT4G31800 41.573 89 48 2 97 185 176 260 5.48e-13 67.0
MS.gene008978.t1 AT4G26640 39.815 108 52 6 95 196 209 309 5.88e-13 67.4
MS.gene008978.t1 AT4G26640 42.029 69 39 1 95 163 379 446 4.23e-12 65.1
MS.gene008978.t1 AT4G26640 39.815 108 52 6 95 196 169 269 6.06e-13 67.4
MS.gene008978.t1 AT4G26640 42.029 69 39 1 95 163 339 406 4.28e-12 65.1
MS.gene008978.t1 AT4G26640 39.815 108 52 6 95 196 137 237 6.13e-13 67.4
MS.gene008978.t1 AT4G26640 42.029 69 39 1 95 163 307 374 4.77e-12 64.7
MS.gene008978.t1 AT4G26640 39.815 108 52 6 95 196 33 133 6.75e-13 67.0
MS.gene008978.t1 AT4G26640 42.029 69 39 1 95 163 203 270 5.39e-12 64.3
MS.gene008978.t1 AT4G26640 39.815 108 52 6 95 196 33 133 6.75e-13 67.0
MS.gene008978.t1 AT4G26640 42.029 69 39 1 95 163 203 270 5.39e-12 64.3
MS.gene008978.t1 AT4G26640 39.815 108 52 6 95 196 33 133 6.75e-13 67.0
MS.gene008978.t1 AT4G26640 42.029 69 39 1 95 163 203 270 5.39e-12 64.3
MS.gene008978.t1 AT4G26640 39.815 108 52 6 95 196 33 133 6.75e-13 67.0
MS.gene008978.t1 AT4G26640 42.029 69 39 1 95 163 203 270 5.39e-12 64.3
MS.gene008978.t1 AT5G46350 40.260 77 44 2 83 159 170 244 6.95e-13 67.0
MS.gene008978.t1 AT5G43290 50.794 63 30 1 92 154 109 170 8.64e-13 66.2
MS.gene008978.t1 AT2G46130 42.308 78 43 2 77 154 11 86 1.02e-12 62.8
MS.gene008978.t1 AT3G01970 42.466 73 39 2 95 165 63 134 1.31e-12 63.5
MS.gene008978.t1 AT2G25000 38.554 83 46 1 80 157 81 163 1.33e-12 65.1
MS.gene008978.t1 AT2G25000 38.554 83 46 1 80 157 81 163 1.33e-12 65.1
MS.gene008978.t1 AT2G25000 38.554 83 46 1 80 157 103 185 1.75e-12 65.1
MS.gene008978.t1 AT2G21900 50.820 61 29 1 98 158 110 169 1.77e-12 64.3
MS.gene008978.t1 AT5G49520 46.667 60 31 1 98 157 222 280 1.82e-12 65.9
MS.gene008978.t1 AT5G45260 34.951 103 63 3 75 174 1185 1286 1.92e-12 66.2
MS.gene008978.t1 AT1G29860 40.789 76 43 2 83 158 123 196 2.28e-12 65.1
MS.gene008978.t1 AT1G69310 37.500 88 53 2 68 155 119 204 2.80e-12 64.7
MS.gene008978.t1 AT1G69310 37.500 88 53 2 68 155 119 204 2.80e-12 64.7
MS.gene008978.t1 AT1G69310 37.500 88 53 2 68 155 119 204 2.80e-12 64.7
MS.gene008978.t1 AT2G25000 38.554 83 46 1 80 157 124 206 3.15e-12 64.3
MS.gene008978.t1 AT1G80590 47.619 63 31 1 98 158 86 148 5.58e-12 63.5
MS.gene008978.t1 AT5G26170 45.902 61 32 1 94 154 110 169 5.87e-12 62.4
MS.gene008978.t1 AT5G13080 37.037 81 48 2 95 173 65 144 6.45e-12 61.6
MS.gene008978.t1 AT2G44745 46.667 60 31 1 95 154 143 201 1.26e-11 62.0
MS.gene008978.t1 AT1G66550 49.123 57 27 1 98 152 109 165 1.79e-11 62.0
MS.gene008978.t1 AT1G66550 49.123 57 27 1 98 152 104 160 1.83e-11 62.0
MS.gene008978.t1 AT5G22570 49.275 69 33 1 93 159 106 174 2.03e-11 62.4
MS.gene008978.t1 AT4G04450 35.955 89 48 1 98 177 199 287 3.48e-11 62.4
MS.gene008978.t1 AT3G62340 34.940 83 51 2 77 157 96 177 3.70e-11 61.6
MS.gene008978.t1 AT4G22070 38.667 75 45 1 83 157 284 357 3.84e-11 62.4
MS.gene008978.t1 AT4G22070 38.667 75 45 1 83 157 284 357 3.84e-11 62.4
MS.gene008978.t1 AT4G22070 38.667 75 45 1 83 157 284 357 3.84e-11 62.4
MS.gene008978.t1 AT4G22070 38.667 75 45 1 83 157 284 357 3.84e-11 62.4
MS.gene008978.t1 AT4G04450 35.955 89 48 1 98 177 293 381 5.77e-11 61.6
MS.gene008978.t1 AT5G01900 50.000 60 28 1 95 152 108 167 6.73e-11 60.8
MS.gene008978.t1 AT1G62300 38.667 75 45 1 83 157 299 372 8.62e-11 61.2

Find 41 sgRNAs with CRISPR-Local

Find 96 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAATTTGATGACATATTC+TGG 0.186185 8.2:+35236309 None:intergenic
CGAAAACAGACACTCGATTT+TGG 0.221712 8.2:+35237858 None:intergenic
TGGATGTGGAGACCCTTTAA+TGG 0.269055 8.2:+35237438 None:intergenic
TGGGGTTCTTGTGGTTCTAA+TGG 0.273735 8.2:+35237779 None:intergenic
CAGAATATGTCATCAAATTC+TGG 0.297461 8.2:-35236308 MS.gene008978:CDS
TAAAGCTGTAGAACTGGTTT+GGG 0.300119 8.2:+35237724 None:intergenic
GTAGTTGATTATGATTTCTC+TGG 0.321068 8.2:+35237759 None:intergenic
GTTGAGTTCAGGATGAAAAT+TGG 0.333089 8.2:+35237805 None:intergenic
TCATGGAGATGGAGAAAATA+TGG 0.338703 8.2:-35237469 MS.gene008978:CDS
ATAAGATTTCAAAAGATTCA+TGG 0.343617 8.2:-35237486 MS.gene008978:CDS
ACGGAATTCCAATTATTTGC+TGG 0.359995 8.2:+35236344 None:intergenic
ATAAAGCTGTAGAACTGGTT+TGG 0.363067 8.2:+35237723 None:intergenic
AGCTGCAACATTACCGCATT+AGG 0.400572 8.2:+35236230 None:intergenic
TTGAGCAACATCCAGCTTCT+CGG 0.416229 8.2:+35236273 None:intergenic
ATTCAATAAAGCTGTAGAAC+TGG 0.420523 8.2:+35237718 None:intergenic
TCTAATGGATGGTTGAGTTC+AGG 0.423106 8.2:+35237794 None:intergenic
TTGCTCAAACGTTAGAAACT+TGG 0.430903 8.2:-35236258 MS.gene008978:CDS
TAGTTGATTATGATTTCTCT+GGG 0.432951 8.2:+35237760 None:intergenic
ACTCGAGCCTTGCTGCTCTC+TGG 0.436121 8.2:+35236200 None:intergenic
ACTTATGAAGTGACATATAT+AGG 0.438664 8.2:-35236386 MS.gene008978:CDS
GTTCTTGTGGTTCTAATGGA+TGG 0.440210 8.2:+35237783 None:intergenic
AGAATTTGATGACATATTCT+GGG 0.457831 8.2:+35236310 None:intergenic
TGTTGTTGTTCAACGAGCAT+TGG 0.465353 8.2:+35237893 None:intergenic
TTTCAAAAGATTCATGGAGA+TGG 0.485120 8.2:-35237480 MS.gene008978:CDS
TTAGATGTTGTCCGAGAAGC+TGG 0.491143 8.2:-35236284 MS.gene008978:CDS
TGCTCAAACGTTAGAAACTT+GGG 0.493239 8.2:-35236257 MS.gene008978:CDS
CTGGTTTGGGGTAGTAGAAT+CGG 0.494141 8.2:+35237737 None:intergenic
TGATTTCTCTGGGGTTCTTG+TGG 0.495150 8.2:+35237770 None:intergenic
AATAATTGGAATTCCGTTGT+TGG 0.498386 8.2:-35236338 MS.gene008978:CDS
AGCAAGGCTCGAGTTCTTGA+TGG 0.505440 8.2:-35236191 MS.gene008978:CDS
GGTGGTTGTAGTCTTAATGC+AGG 0.525304 8.2:+35237826 None:intergenic
AAATAATAACCAAGTGACAT+TGG 0.536349 8.2:-35237527 MS.gene008978:CDS
CATAGCTCACCAATGTCACT+TGG 0.536490 8.2:+35237518 None:intergenic
TTAAAGGGTCTCCACATCCA+AGG 0.584498 8.2:-35237435 MS.gene008978:intron
GAGTTCAGGATGAAAATTGG+TGG 0.596987 8.2:+35237808 None:intergenic
AAACTTGGGTTCTCCTAATG+CGG 0.613316 8.2:-35236243 MS.gene008978:CDS
ATTCTGGGAGCTACCAACAA+CGG 0.652456 8.2:+35236325 None:intergenic
AAAGCTGTAGAACTGGTTTG+GGG 0.667426 8.2:+35237725 None:intergenic
TGATCAGCCAGAGAGCAGCA+AGG 0.680979 8.2:-35236207 MS.gene008978:CDS
AGTTGATTATGATTTCTCTG+GGG 0.705896 8.2:+35237761 None:intergenic
GACATTGGTGAGCTATGTGA+AGG 0.706817 8.2:-35237512 MS.gene008978:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAAATTATATATTTTTA+GGG - chr8.2:35237295-35237314 MS.gene008978:intron 0.0%
!!! TTAAAAAATTATATATTTTT+AGG - chr8.2:35237294-35237313 MS.gene008978:intron 0.0%
!! TACATATAAAATATGTTAAA+TGG + chr8.2:35236438-35236457 None:intergenic 10.0%
!! AAAAAAATGATACATATACA+AGG + chr8.2:35237009-35237028 None:intergenic 15.0%
!! AAAAAATGATGTAAATGTAA+GGG + chr8.2:35237437-35237456 None:intergenic 15.0%
!! AGGGTTAAAATTAATATTAA+AGG + chr8.2:35237146-35237165 None:intergenic 15.0%
!! TAAAAAATGATGTAAATGTA+AGG + chr8.2:35237438-35237457 None:intergenic 15.0%
!! TATAAAATATGTTAAATGGT+AGG + chr8.2:35236434-35236453 None:intergenic 15.0%
!!! ATTTTTTCTACAATAAAAGA+AGG + chr8.2:35236531-35236550 None:intergenic 15.0%
!!! CAATATGAATAAATTTTGTA+GGG - chr8.2:35237194-35237213 MS.gene008978:intron 15.0%
!!! TTTTTTCTACAATAAAAGAA+GGG + chr8.2:35236530-35236549 None:intergenic 15.0%
!! AAAAATGATGTAAATGTAAG+GGG + chr8.2:35237436-35237455 None:intergenic 20.0%
!! AAAAATTTAAACCAGGAAAA+AGG - chr8.2:35236395-35236414 MS.gene008978:CDS 20.0%
!! AAACAACAAAAATTTAAACC+AGG - chr8.2:35236388-35236407 MS.gene008978:CDS 20.0%
!! ATAAGATTTCAAAAGATTCA+TGG - chr8.2:35236588-35236607 MS.gene008978:intron 20.0%
!! CCTACAAAATTTATTCATAT+TGG + chr8.2:35237196-35237215 None:intergenic 20.0%
!! TCAAAAACAAAAAATCAAAG+AGG + chr8.2:35237040-35237059 None:intergenic 20.0%
!! TCATATAGACACATATAAAT+AGG + chr8.2:35237524-35237543 None:intergenic 20.0%
!! TTAGTTAAATGTGACAAATT+TGG - chr8.2:35236815-35236834 MS.gene008978:intron 20.0%
!! TTTGAATGAATAAAAAACCT+TGG + chr8.2:35236659-35236678 None:intergenic 20.0%
!!! AATTTTAACCCTTATATTGA+TGG - chr8.2:35237154-35237173 MS.gene008978:intron 20.0%
!!! ATTTTAACCCATCAATATAA+GGG + chr8.2:35237165-35237184 None:intergenic 20.0%
!!! ATTTTAACCCTTATATTGAT+GGG - chr8.2:35237155-35237174 MS.gene008978:intron 20.0%
!!! CCAATATGAATAAATTTTGT+AGG - chr8.2:35237193-35237212 MS.gene008978:intron 20.0%
!!! GGTTTAAATTTTTGTTGTTT+CGG + chr8.2:35236388-35236407 None:intergenic 20.0%
! AAATAATAACCAAGTGACAT+TGG - chr8.2:35236547-35236566 MS.gene008978:intron 25.0%
! ACAAAAAACCAGCAAATAAT+TGG - chr8.2:35237722-35237741 MS.gene008978:CDS 25.0%
! ACTTATGAAGTGACATATAT+AGG - chr8.2:35237688-35237707 MS.gene008978:CDS 25.0%
! ATGGACAAAAATCCATTAAA+GGG - chr8.2:35236624-35236643 MS.gene008978:intron 25.0%
! CAAACACTGAAATAAAAATG+TGG - chr8.2:35237231-35237250 MS.gene008978:intron 25.0%
! TAGTTGATTATGATTTCTCT+GGG + chr8.2:35236317-35236336 None:intergenic 25.0%
! TATGGACAAAAATCCATTAA+AGG - chr8.2:35236623-35236642 MS.gene008978:intron 25.0%
! TTGTTTAGCAAAAAAACTAG+TGG - chr8.2:35237642-35237661 MS.gene008978:intron 25.0%
!! AAGAAGGGTAAGATAATTTT+CGG + chr8.2:35236515-35236534 None:intergenic 25.0%
!! ACTAATTAAAACCATTGGTT+TGG + chr8.2:35236757-35236776 None:intergenic 25.0%
!! AGAATTTGATGACATATTCT+GGG + chr8.2:35237767-35237786 None:intergenic 25.0%
!!! CTAATTAAAACCATTGGTTT+GGG + chr8.2:35236756-35236775 None:intergenic 25.0%
!!! GATTTTAACCCATCAATATA+AGG + chr8.2:35237166-35237185 None:intergenic 25.0%
AAGAATGATCAAAATGCATG+TGG + chr8.2:35236782-35236801 None:intergenic 30.0%
AATAATTGGAATTCCGTTGT+TGG - chr8.2:35237736-35237755 MS.gene008978:CDS 30.0%
ACCAAGCATTAAAGAACAAA+GGG + chr8.2:35237079-35237098 None:intergenic 30.0%
AGTTGATTATGATTTCTCTG+GGG + chr8.2:35236316-35236335 None:intergenic 30.0%
ATGTATTATTTCACGTATCG+TGG - chr8.2:35237460-35237479 MS.gene008978:CDS 30.0%
ATTCAATAAAGCTGTAGAAC+TGG + chr8.2:35236359-35236378 None:intergenic 30.0%
CAGAATATGTCATCAAATTC+TGG - chr8.2:35237766-35237785 MS.gene008978:CDS 30.0%
CTAGTGGAGAAAATAAAAAC+TGG - chr8.2:35237658-35237677 MS.gene008978:intron 30.0%
GTAGTTGATTATGATTTCTC+TGG + chr8.2:35236318-35236337 None:intergenic 30.0%
TACCAAGCATTAAAGAACAA+AGG + chr8.2:35237080-35237099 None:intergenic 30.0%
TGAATAAAAAACCTTGGATG+TGG + chr8.2:35236653-35236672 None:intergenic 30.0%
TGGTCACTAATTAAAACCAT+TGG + chr8.2:35236762-35236781 None:intergenic 30.0%
TGTAAATGTAAGGGGAAAAT+AGG + chr8.2:35237428-35237447 None:intergenic 30.0%
TGTATTATTTCACGTATCGT+GGG - chr8.2:35237461-35237480 MS.gene008978:CDS 30.0%
TTTCAAAAGATTCATGGAGA+TGG - chr8.2:35236594-35236613 MS.gene008978:intron 30.0%
! CAGAATTTGATGACATATTC+TGG + chr8.2:35237768-35237787 None:intergenic 30.0%
! TCAATTCTTTACCTTTTTCC+TGG + chr8.2:35236409-35236428 None:intergenic 30.0%
ACGGAATTCCAATTATTTGC+TGG + chr8.2:35237733-35237752 None:intergenic 35.0%
ATAAAGCTGTAGAACTGGTT+TGG + chr8.2:35236354-35236373 None:intergenic 35.0%
CAAGCATTAAAGAACAAAGG+GGG + chr8.2:35237077-35237096 None:intergenic 35.0%
CAATCAATGAATGACTTTGC+AGG - chr8.2:35237590-35237609 MS.gene008978:intron 35.0%
CCAAGCATTAAAGAACAAAG+GGG + chr8.2:35237078-35237097 None:intergenic 35.0%
GGAGAAAATAAAAACTGGAG+AGG - chr8.2:35237663-35237682 MS.gene008978:intron 35.0%
GTTGAGTTCAGGATGAAAAT+TGG + chr8.2:35236272-35236291 None:intergenic 35.0%
TCATGGAGATGGAGAAAATA+TGG - chr8.2:35236605-35236624 MS.gene008978:intron 35.0%
TGCTCAAACGTTAGAAACTT+GGG - chr8.2:35237817-35237836 MS.gene008978:CDS 35.0%
TTGCTCAAACGTTAGAAACT+TGG - chr8.2:35237816-35237835 MS.gene008978:CDS 35.0%
! TAAAGCTGTAGAACTGGTTT+GGG + chr8.2:35236353-35236372 None:intergenic 35.0%
!! GACAAATTTGGTCTTGATAG+TGG - chr8.2:35236827-35236846 MS.gene008978:intron 35.0%
AAACTTGGGTTCTCCTAATG+CGG - chr8.2:35237831-35237850 MS.gene008978:CDS 40.0%
CCCCTTTGTTCTTTAATGCT+TGG - chr8.2:35237075-35237094 MS.gene008978:intron 40.0%
GAGTTCAGGATGAAAATTGG+TGG + chr8.2:35236269-35236288 None:intergenic 40.0%
TTATTTCACGTATCGTGGGA+CGG - chr8.2:35237465-35237484 MS.gene008978:CDS 40.0%
! CGAAAACAGACACTCGATTT+TGG + chr8.2:35236219-35236238 None:intergenic 40.0%
! TCTAATGGATGGTTGAGTTC+AGG + chr8.2:35236283-35236302 None:intergenic 40.0%
!! AAAACCATTGGTTTGGGTGT+GGG + chr8.2:35236750-35236769 None:intergenic 40.0%
!! AAAGCTGTAGAACTGGTTTG+GGG + chr8.2:35236352-35236371 None:intergenic 40.0%
!! GTTCTTGTGGTTCTAATGGA+TGG + chr8.2:35236294-35236313 None:intergenic 40.0%
!! TAAAACCATTGGTTTGGGTG+TGG + chr8.2:35236751-35236770 None:intergenic 40.0%
AGCTGCAACATTACCGCATT+AGG + chr8.2:35237847-35237866 None:intergenic 45.0%
CATAGCTCACCAATGTCACT+TGG + chr8.2:35236559-35236578 None:intergenic 45.0%
GACATTGGTGAGCTATGTGA+AGG - chr8.2:35236562-35236581 MS.gene008978:intron 45.0%
TGGATGTGGAGACCCTTTAA+TGG + chr8.2:35236639-35236658 None:intergenic 45.0%
TTAAAGGGTCTCCACATCCA+AGG - chr8.2:35236639-35236658 MS.gene008978:intron 45.0%
TTAGATGTTGTCCGAGAAGC+TGG - chr8.2:35237790-35237809 MS.gene008978:CDS 45.0%
TTGAGCAACATCCAGCTTCT+CGG + chr8.2:35237804-35237823 None:intergenic 45.0%
! ATTCTGGGAGCTACCAACAA+CGG + chr8.2:35237752-35237771 None:intergenic 45.0%
! GGTGGTTGTAGTCTTAATGC+AGG + chr8.2:35236251-35236270 None:intergenic 45.0%
!! CTGGTTTGGGGTAGTAGAAT+CGG + chr8.2:35236340-35236359 None:intergenic 45.0%
!! TGATTTCTCTGGGGTTCTTG+TGG + chr8.2:35236307-35236326 None:intergenic 45.0%
!! TGGGGTTCTTGTGGTTCTAA+TGG + chr8.2:35236298-35236317 None:intergenic 45.0%
!!! ATTTTGTTTTATATTAAAAT+TGG - chr8.2:35237118-35237137 MS.gene008978:intron 5.0%
AGCAAGGCTCGAGTTCTTGA+TGG - chr8.2:35237883-35237902 MS.gene008978:CDS 50.0%
TGGGTGTGGGTGTGTGTATT+AGG + chr8.2:35236737-35236756 None:intergenic 50.0%
CACACCCACACCCAAACCAA+TGG - chr8.2:35236743-35236762 MS.gene008978:intron 55.0%
TGATCAGCCAGAGAGCAGCA+AGG - chr8.2:35237867-35237886 MS.gene008978:CDS 55.0%
ACTCGAGCCTTGCTGCTCTC+TGG + chr8.2:35237877-35237896 None:intergenic 60.0%
CACGTATCGTGGGACGGAGT+CGG - chr8.2:35237471-35237490 MS.gene008978:CDS 60.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 35236184 35237912 35236184 ID=MS.gene008978
chr8.2 mRNA 35236184 35237912 35236184 ID=MS.gene008978.t1;Parent=MS.gene008978
chr8.2 exon 35237680 35237912 35237680 ID=MS.gene008978.t1.exon1;Parent=MS.gene008978.t1
chr8.2 CDS 35237680 35237912 35237680 ID=cds.MS.gene008978.t1;Parent=MS.gene008978.t1
chr8.2 exon 35237436 35237552 35237436 ID=MS.gene008978.t1.exon2;Parent=MS.gene008978.t1
chr8.2 CDS 35237436 35237552 35237436 ID=cds.MS.gene008978.t1;Parent=MS.gene008978.t1
chr8.2 exon 35236184 35236484 35236184 ID=MS.gene008978.t1.exon3;Parent=MS.gene008978.t1
chr8.2 CDS 35236184 35236484 35236184 ID=cds.MS.gene008978.t1;Parent=MS.gene008978.t1
Gene Sequence

>MS.gene008978

ATGCTCGTTGAACAACAACATGTTCAAGCAAACCAAAATCGAGTGTCTGTTTTCGACTCTATTTCCTGCATTAAGACTACAACCACCAATTTTCATCCTGAACTCAACCATCCATTAGAACCACAAGAACCCCAGAGAAATCATAATCAACTACCGATTCTACTACCCCAAACCAGTTCTACAGCTTTATTGAATACAAAACCGAAACAACAAAAATTTAAACCAGGAAAAAGGTAAAGAATTGATTCCTACCATTTAACATATTTTATATGTAAATATATTTCATTTTATTGAAATTATTAAAATACTTTTACATAACTCATTTTTACCGAAAATTATCTTACCCTTCTTTTATTGTAGAAAAAATAATAACCAAGTGACATTGGTGAGCTATGTGAAGGCAGATAAGATTTCAAAAGATTCATGGAGATGGAGAAAATATGGACAAAAATCCATTAAAGGGTCTCCACATCCAAGGTTTTTTATTCATTCAAAACTCGAACATTATCATAATTTTCTTTTTTCTAATATTAACACAATATTTTTGTTACCTAATACACACACCCACACCCAAACCAATGGTTTTAATTAGTGACCACATGCATTTTGATCATTCTTATTGAAAAGAGTTTTAGTTAAATGTGACAAATTTGGTCTTGATAGTGGTTGCGTTTTCTTTTCAATTTCGAAAGAATAAAAAATTGTTGCTCTCATCTTTTCAATGAGAGTCATGTTTGCAAAATATTTTTATTTACAAAGTAAATGTCACTTTTAATTTTCTATGTAATTAGATTAGTTTTTACTTTAATATATGTTTTAAGACCTTGTATATGTATCATTTTTTTGCTTTTAACCTCTTTGATTTTTTGTTTTTGACTATCACAAATATTCCCCCTTTGTTCTTTAATGCTTGGTATTTGTTTTAGTTCATGTAATTTTGTTTTATATTAAAATTGGTTCCTTTAATATTAATTTTAACCCTTATATTGATGGGTTAAAATCAAATATTCCAATATGAATAAATTTTGTAGGGACTAAACAAAACAACAAACACTGAAATAAAAATGTGGTATATTTGAGAAAGCTAAACAAATTAGAAAGACTAAATTTTTAAAAAATTATATATTTTTAGGGAACAAAAACATATTTAAATCTCACTTATTTTTCACAACTGTAAAATTTAATGAATATTAATTGCATCACTCACATGTCTATATCTTTCACTTTAGAATTGTAAAACTCCTATTTTCCCCTTACATTTACATCATTTTTTAATATGTATTATTTCACGTATCGTGGGACGGAGTCGGATTTTAAATATTTTTTTGAAAGCATCGCCTATTTATATGTGTCTATATGATTTTAGATATTAAAATGTTACGATTTAGTGATGTTTGATATAAAAACAATCAATGAATGACTTTGCAGGAGCTACTTCAAATGTAGCAGTTTCAACGATTGTTTAGCAAAAAAACTAGTGGAGAAAATAAAAACTGGAGAGGACACTTATGAAGTGACATATATAGGAGAACACAATCACAAAAAACCAGCAAATAATTGGAATTCCGTTGTTGGTAGCTCCCAGAATATGTCATCAAATTCTGGATTAGATGTTGTCCGAGAAGCTGGATGTTGCTCAAACGTTAGAAACTTGGGTTCTCCTAATGCGGTAATGTTGCAGCTTGATCAGCCAGAGAGCAGCAAGGCTCGAGTTCTTGATGGTGAATAA
Protein sequence

>MS.gene008978.t1

MLVEQQHVQANQNRVSVFDSISCIKTTTTNFHPELNHPLEPQEPQRNHNQLPILLPQTSSTALLNTKPKQQKFKPGKRKNNNQVTLVSYVKADKISKDSWRWRKYGQKSIKGSPHPRSYFKCSSFNDCLAKKLVEKIKTGEDTYEVTYIGEHNHKKPANNWNSVVGSSQNMSSNSGLDVVREAGCCSNVRNLGSPNAVMLQLDQPESSKARVLDGE