AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene009009

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009009.t1 MTR_8g066820 100.000 235 0 0 1 235 1 235 2.77e-180 493
MS.gene009009.t1 MTR_5g030130 84.874 238 32 3 1 235 1 237 2.19e-148 413
MS.gene009009.t1 MTR_5g030130 87.952 166 18 1 1 164 1 166 4.63e-109 311
MS.gene009009.t1 MTR_5g007230 69.767 215 56 3 19 233 7 212 1.28e-107 309
MS.gene009009.t1 MTR_4g078170 72.059 204 53 4 31 233 13 213 3.93e-104 300
MS.gene009009.t1 MTR_1g062160 55.340 206 73 5 33 229 7 202 4.40e-73 221
MS.gene009009.t1 MTR_7g102790 58.333 204 71 5 33 229 7 203 2.09e-71 217
MS.gene009009.t1 MTR_2g060540 49.630 135 58 4 34 158 11 145 9.98e-39 132
MS.gene009009.t1 MTR_2g060500 48.148 135 60 3 34 158 11 145 2.16e-38 130
MS.gene009009.t1 MTR_4g116300 48.031 127 65 1 33 159 6 131 6.74e-37 130
MS.gene009009.t1 MTR_2g055210 31.818 264 130 6 9 228 82 339 2.29e-36 131
MS.gene009009.t1 MTR_2g084495 34.052 232 109 6 34 228 5 229 2.32e-36 128
MS.gene009009.t1 MTR_4g094680 33.478 230 118 7 26 228 15 236 4.97e-35 125
MS.gene009009.t1 MTR_2g084525 46.715 137 63 4 34 160 5 141 7.51e-32 117
MS.gene009009.t1 MTR_2g084510 43.066 137 68 3 34 160 4 140 1.12e-30 114
MS.gene009009.t1 MTR_2g036170 31.532 222 119 6 33 228 37 251 7.68e-28 106
MS.gene009009.t1 MTR_8g105930 33.951 162 82 6 19 159 1 158 1.68e-16 76.3
MS.gene009009.t1 MTR_8g097310 29.193 161 99 4 72 228 4 153 2.03e-15 71.6
MS.gene009009.t1 MTR_5g077740 26.866 201 105 8 33 228 23 186 6.68e-15 70.9
MS.gene009009.t1 MTR_1g032880 33.929 112 60 4 79 180 27 134 4.41e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009009.t1 AT4G17900 73.391 233 52 5 1 229 1 227 1.86e-122 347
MS.gene009009.t1 AT4G17900 72.906 203 46 4 30 229 17 213 5.10e-104 300
MS.gene009009.t1 AT1G32700 70.968 217 53 5 24 235 2 213 1.65e-103 298
MS.gene009009.t1 AT1G32700 70.391 179 44 4 61 235 1 174 5.25e-80 238
MS.gene009009.t1 AT5G46710 52.521 238 90 8 1 228 1 225 5.19e-78 234
MS.gene009009.t1 AT1G21000 50.209 239 82 4 26 228 6 243 5.69e-77 232
MS.gene009009.t1 AT1G21000 50.209 239 82 4 26 228 9 246 6.83e-77 232
MS.gene009009.t1 AT1G76590 50.877 228 80 4 33 228 18 245 1.68e-74 226
MS.gene009009.t1 AT5G46710 52.830 212 84 6 26 228 5 209 2.67e-72 219
MS.gene009009.t1 AT5G46710 59.627 161 57 3 1 159 1 155 1.45e-66 203
MS.gene009009.t1 AT1G43000 46.083 217 101 4 26 228 9 223 2.91e-62 194
MS.gene009009.t1 AT1G43000 46.083 217 101 4 26 228 2 216 3.04e-62 194
MS.gene009009.t1 AT2G27930 44.712 208 83 5 33 230 4 189 4.20e-53 170
MS.gene009009.t1 AT2G27930 44.712 208 83 5 33 230 4 189 4.20e-53 170
MS.gene009009.t1 AT2G27930 55.474 137 51 2 33 159 4 140 9.30e-49 158
MS.gene009009.t1 AT2G27930 55.474 137 51 2 33 159 4 140 9.30e-49 158
MS.gene009009.t1 AT2G12646 48.819 127 64 1 33 159 3 128 2.58e-37 131
MS.gene009009.t1 AT2G12646 48.819 127 64 1 33 159 6 131 2.88e-37 131
MS.gene009009.t1 AT2G12646 48.819 127 64 1 33 159 6 131 2.88e-37 131
MS.gene009009.t1 AT3G60670 37.949 195 105 3 28 221 2 181 2.61e-36 128
MS.gene009009.t1 AT1G31040 34.513 226 116 5 33 228 19 242 2.32e-34 123
MS.gene009009.t1 AT2G27930 45.455 154 53 4 86 230 61 192 5.27e-34 121
MS.gene009009.t1 AT2G27930 45.455 154 53 4 86 230 61 192 5.27e-34 121
MS.gene009009.t1 AT2G01818 34.579 214 115 9 35 228 13 221 4.18e-22 90.9
MS.gene009009.t1 AT2G01818 33.987 153 81 7 92 228 9 157 9.88e-11 58.9

Find 47 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGATCATCGTGCTATTC+AGG 0.214126 8.2:+35919897 MS.gene009009:CDS
GAGCTGACTTGTTCTTCTTC+TGG 0.262316 8.2:-35921299 None:intergenic
CCTTGCACTGTTGATAATAT+AGG 0.282719 8.2:-35920495 None:intergenic
CTTCATACCATGATGTGATT+AGG 0.304121 8.2:+35920429 MS.gene009009:CDS
AACTATGAATTCTAGATTGT+TGG 0.377091 8.2:+35921261 MS.gene009009:intron
TTCATACCATGATGTGATTA+GGG 0.385029 8.2:+35920430 MS.gene009009:CDS
TCCTTTCGATTCTGTTCACT+TGG 0.392188 8.2:+35920605 MS.gene009009:CDS
CAGAAAGTGTTGGACATAAC+AGG 0.395592 8.2:+35920464 MS.gene009009:CDS
ACTGTTGGTGGTGGTGTTGA+AGG 0.411165 8.2:-35921411 None:intergenic
TATTGTTTGGATTGTATGAA+TGG 0.420599 8.2:+35919844 MS.gene009009:CDS
TGAGTGCAATATGTATTGTT+TGG 0.429253 8.2:+35919831 MS.gene009009:CDS
TGATGTTCTTCAGTCTTCCA+TGG 0.449397 8.2:-35921371 None:intergenic
GTCCTGATGATGAGGAAAAC+AGG 0.450549 8.2:+35919731 MS.gene009009:CDS
GCAGCACTAGTCCTCCCATC+GGG 0.455937 8.2:-35921479 None:intergenic
CACAGCAGCAGTTGCAGCCA+TGG 0.460151 8.2:+35921354 MS.gene009009:CDS
AGATCAGCCAAAAGAAGAAA+AGG 0.472444 8.2:+35921441 MS.gene009009:CDS
GAATAGCACGATGATCTTTG+TGG 0.487973 8.2:-35919894 None:intergenic
GCTGATCTGTAATTGACTGT+TGG 0.490334 8.2:-35921426 None:intergenic
CCTCAGCCAAGGCCCGGAAA+AGG 0.511324 8.2:+35920539 MS.gene009009:CDS
AAGAAACGCTCTTTGAGAAG+AGG 0.515700 8.2:-35919772 None:intergenic
CCTATATTATCAACAGTGCA+AGG 0.522886 8.2:+35920495 MS.gene009009:CDS
GAGAGGCCTCAGCCAAGGCC+CGG 0.529902 8.2:+35920533 MS.gene009009:CDS
GATCTGTAATTGACTGTTGG+TGG 0.533120 8.2:-35921423 None:intergenic
ATTCTGTTCACTTGGCTGCA+AGG 0.534263 8.2:+35920613 MS.gene009009:CDS
CTGTAATTGACTGTTGGTGG+TGG 0.534739 8.2:-35921420 None:intergenic
TGCAGCACTAGTCCTCCCAT+CGG 0.541315 8.2:-35921480 None:intergenic
AATTCCTCATCGTGCCCCGA+TGG 0.544126 8.2:+35921464 MS.gene009009:CDS
CTCGCAGACTTCACAAGTGT+TGG 0.560178 8.2:-35920567 None:intergenic
CATTCACCCTAATCACATCA+TGG 0.571167 8.2:-35920436 None:intergenic
GGGTTGTGTTCTTGAATGAG+AGG 0.577373 8.2:+35920516 MS.gene009009:CDS
ATTCCTCATCGTGCCCCGAT+GGG 0.578637 8.2:+35921465 MS.gene009009:CDS
GAATGAGATTCAGAAAGTGT+TGG 0.585916 8.2:+35920454 MS.gene009009:CDS
TTGAGAAGAGGTTTCAACCA+TGG 0.588393 8.2:-35919760 None:intergenic
CCTCATCGTGCCCCGATGGG+AGG 0.595596 8.2:+35921468 MS.gene009009:CDS
AGGAAAACAGGTGGCCACCA+TGG 0.603560 8.2:+35919743 MS.gene009009:CDS
CCTCCCATCGGGGCACGATG+AGG 0.618324 8.2:-35921468 None:intergenic
TGAATGAGAGGCCTCAGCCA+AGG 0.624070 8.2:+35920528 MS.gene009009:CDS
GCCAAGTGAACAGAATCGAA+AGG 0.631504 8.2:-35920606 None:intergenic
AGAATCGAAAGGAATCGAGA+AGG 0.635045 8.2:-35920595 None:intergenic
TGCTGGAGGTCCTGATGATG+AGG 0.642425 8.2:+35919723 MS.gene009009:CDS
AGAAGAGGTTTCAACCATGG+TGG 0.644229 8.2:-35919757 None:intergenic
TTCAATGATATCAGACTCAG+AGG 0.648076 8.2:+35921326 MS.gene009009:CDS
CTATATTATCAACAGTGCAA+GGG 0.657853 8.2:+35920496 MS.gene009009:CDS
TGGAAGACTGAAGAACATCA+AGG 0.658483 8.2:+35921374 MS.gene009009:CDS
TGTGCTTGTTACAGATAAGG+AGG 0.685559 8.2:+35920405 MS.gene009009:intron
CTGATGATGAGGAAAACAGG+TGG 0.717367 8.2:+35919734 MS.gene009009:CDS
CAGCACTAGTCCTCCCATCG+GGG 0.730442 8.2:-35921478 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTGATAATTTTTTTGA+AGG + chr8.2:35919699-35919718 MS.gene009009:intron 10.0%
!!! AATTTGATAATTTTTTTGAA+GGG + chr8.2:35919700-35919719 MS.gene009009:intron 10.0%
!!! ATTTTAGAGAAAAAAAAAAT+TGG + chr8.2:35919623-35919642 MS.gene009009:intron 10.0%
!!! TTTCAGTTTTATTTTTATTT+AGG + chr8.2:35919234-35919253 MS.gene009009:intron 10.0%
!!! TTTTAGAGAAAAAAAAAATT+GGG + chr8.2:35919624-35919643 MS.gene009009:intron 10.0%
!! TAAAAATTAAAAACAGCAAA+AGG - chr8.2:35920069-35920088 None:intergenic 15.0%
!!! ATTATTTCTACTACTATTTT+GGG - chr8.2:35920696-35920715 None:intergenic 15.0%
!!! CTATTTAAAATATTGATCAA+TGG + chr8.2:35920981-35921000 MS.gene009009:intron 15.0%
!!! TAAACTAGTGTTAAATTTTT+TGG + chr8.2:35919142-35919161 MS.gene009009:intron 15.0%
!!! TATTATTTCTACTACTATTT+TGG - chr8.2:35920697-35920716 None:intergenic 15.0%
!!! TATTTGTGTTTTTAAATTCT+GGG + chr8.2:35919491-35919510 MS.gene009009:intron 15.0%
!!! TTATTTGTGTTTTTAAATTC+TGG + chr8.2:35919490-35919509 MS.gene009009:intron 15.0%
!!! TTGATCAATATTTTAAATAG+TGG - chr8.2:35920981-35921000 None:intergenic 15.0%
!! AAATTGAATTGAATGCAAAA+GGG - chr8.2:35921166-35921185 None:intergenic 20.0%
!! AATAATTGAATTGATTGTAG+TGG - chr8.2:35920233-35920252 None:intergenic 20.0%
!! AATACAATAAATGTGTCAAA+GGG - chr8.2:35919999-35920018 None:intergenic 20.0%
!! AATGACAAAATTTCAAATGT+TGG - chr8.2:35921133-35921152 None:intergenic 20.0%
!! ATAATCATGAATGCTAATAT+AGG + chr8.2:35921075-35921094 MS.gene009009:intron 20.0%
!! ATGACAAAATTTCAAATGTT+GGG - chr8.2:35921132-35921151 None:intergenic 20.0%
!! TAAATTGAATTGAATGCAAA+AGG - chr8.2:35921167-35921186 None:intergenic 20.0%
!! TATTATAGACTATTCTTATG+AGG - chr8.2:35920886-35920905 None:intergenic 20.0%
!!! ATGAACTAGTGTTAATTTTT+TGG + chr8.2:35919285-35919304 MS.gene009009:intron 20.0%
!!! ATTTGTTTTGATTGCAATTT+TGG + chr8.2:35920804-35920823 MS.gene009009:intron 20.0%
!!! CATTATTTTATGAGTTAACT+TGG + chr8.2:35919587-35919606 MS.gene009009:intron 20.0%
!!! GAAATTTTGTCATTTCAATA+TGG + chr8.2:35921139-35921158 MS.gene009009:intron 20.0%
!!! TAGTACTGTTTTTGAATTTT+GGG + chr8.2:35919329-35919348 MS.gene009009:intron 20.0%
!!! TATTTGTGATTTTGAATTGT+GGG + chr8.2:35919667-35919686 MS.gene009009:intron 20.0%
!!! TCTTGTATTTTAGAGAATTA+CGG - chr8.2:35920920-35920939 None:intergenic 20.0%
!!! TGAACTAGTGTTAATTTTTT+GGG + chr8.2:35919286-35919305 MS.gene009009:intron 20.0%
!!! TTAGTACTGTTTTTGAATTT+TGG + chr8.2:35919328-35919347 MS.gene009009:intron 20.0%
!!! TTATTTGTGATTTTGAATTG+TGG + chr8.2:35919666-35919685 MS.gene009009:intron 20.0%
! AAATTTCAAATGTTGGGTAT+AGG - chr8.2:35921126-35921145 None:intergenic 25.0%
! AACTATGAATTCTAGATTGT+TGG + chr8.2:35921261-35921280 MS.gene009009:intron 25.0%
! AATGGGAATTTATGGATAAT+TGG - chr8.2:35920097-35920116 None:intergenic 25.0%
! ATCTTATTCAAATGGTTAGA+AGG - chr8.2:35920668-35920687 None:intergenic 25.0%
! CATCAAAATCCTTGATTTAA+CGG - chr8.2:35920740-35920759 None:intergenic 25.0%
! GAACAATAAATGGGAATTTA+TGG - chr8.2:35920105-35920124 None:intergenic 25.0%
! GAATACAATAAATGTGTCAA+AGG - chr8.2:35920000-35920019 None:intergenic 25.0%
! TATTGTTTGGATTGTATGAA+TGG + chr8.2:35919844-35919863 MS.gene009009:CDS 25.0%
! TCTTATTCAAATGGTTAGAA+GGG - chr8.2:35920667-35920686 None:intergenic 25.0%
!! ATTTGTGATTTTGAATTGTG+GGG + chr8.2:35919668-35919687 MS.gene009009:intron 25.0%
!! TGTTTCGAATGTAATGTTTT+GGG + chr8.2:35919464-35919483 MS.gene009009:intron 25.0%
!! TTGTTTCGAATGTAATGTTT+TGG + chr8.2:35919463-35919482 MS.gene009009:intron 25.0%
!!! TGTTTGTGTTTTTGAATTCT+GGG + chr8.2:35919186-35919205 MS.gene009009:intron 25.0%
!!! TTGTTTGTGTTTTTGAATTC+TGG + chr8.2:35919185-35919204 MS.gene009009:intron 25.0%
AACAACAGAGATCATTAGAA+AGG - chr8.2:35920381-35920400 None:intergenic 30.0%
ATTATTGTCATTGTTGTGTC+TGG + chr8.2:35920285-35920304 MS.gene009009:intron 30.0%
CACAACTTTGATGAATTCAA+TGG - chr8.2:35919940-35919959 None:intergenic 30.0%
CTATATTATCAACAGTGCAA+GGG + chr8.2:35920496-35920515 MS.gene009009:CDS 30.0%
CTTATTCAAATGGTTAGAAG+GGG - chr8.2:35920666-35920685 None:intergenic 30.0%
GGGAGTTAATCTTATTCAAA+TGG - chr8.2:35920676-35920695 None:intergenic 30.0%
TGAGTGCAATATGTATTGTT+TGG + chr8.2:35919831-35919850 MS.gene009009:CDS 30.0%
TTCATACCATGATGTGATTA+GGG + chr8.2:35920430-35920449 MS.gene009009:CDS 30.0%
TTGACACCAACATTAAATGT+CGG - chr8.2:35920197-35920216 None:intergenic 30.0%
! AGCTTTTCAATGCAATAACA+TGG + chr8.2:35920350-35920369 MS.gene009009:intron 30.0%
! AGGAATTCCTTTTCTTCTTT+TGG - chr8.2:35921451-35921470 None:intergenic 30.0%
! GTTTCGAATGTAATGTTTTG+GGG + chr8.2:35919465-35919484 MS.gene009009:intron 30.0%
! GTTTTTCTGACAACAAAAAC+AGG - chr8.2:35920022-35920041 None:intergenic 30.0%
!! AAAAACCATCACTTTTCCTT+TGG + chr8.2:35920036-35920055 MS.gene009009:intron 30.0%
!! TTTTGGGAATGCAATGATTT+TGG + chr8.2:35919302-35919321 MS.gene009009:intron 30.0%
!!! ATAATTTTTTTGAAGGGTGC+TGG + chr8.2:35919706-35919725 MS.gene009009:intron 30.0%
!!! TGTTTTGACTTTTGAGTCTA+TGG + chr8.2:35921218-35921237 MS.gene009009:intron 30.0%
!!! TGTTTTTGGGCTTAATTTCA+CGG - chr8.2:35919012-35919031 None:intergenic 30.0%
ACCTCAATGCATTAACATTG+AGG - chr8.2:35920842-35920861 None:intergenic 35.0%
ACCTCAATGTTAATGCATTG+AGG + chr8.2:35920838-35920857 MS.gene009009:intron 35.0%
AGATCAGCCAAAAGAAGAAA+AGG + chr8.2:35921441-35921460 MS.gene009009:CDS 35.0%
ATGTTGGGTATAGGAACAAA+TGG - chr8.2:35921117-35921136 None:intergenic 35.0%
CAAATCCAAAGGAAAAGTGA+TGG - chr8.2:35920044-35920063 None:intergenic 35.0%
CCTATATTATCAACAGTGCA+AGG + chr8.2:35920495-35920514 MS.gene009009:CDS 35.0%
CTTCATACCATGATGTGATT+AGG + chr8.2:35920429-35920448 MS.gene009009:CDS 35.0%
GGTGGTTACGAACAATAAAT+GGG - chr8.2:35920114-35920133 None:intergenic 35.0%
GTGAAATTAAGCCCAAAAAC+AGG + chr8.2:35919011-35919030 MS.gene009009:CDS 35.0%
TCAAGCTAGCACTTAAAAGT+GGG + chr8.2:35921040-35921059 MS.gene009009:intron 35.0%
TGAACACACAATGAGATTCT+TGG - chr8.2:35919402-35919421 None:intergenic 35.0%
TGATTTAACGGCCAAAAGTT+TGG - chr8.2:35920728-35920747 None:intergenic 35.0%
TGGTGGTTACGAACAATAAA+TGG - chr8.2:35920115-35920134 None:intergenic 35.0%
TTCAAGCTAGCACTTAAAAG+TGG + chr8.2:35921039-35921058 MS.gene009009:intron 35.0%
TTCAATGATATCAGACTCAG+AGG + chr8.2:35921326-35921345 MS.gene009009:CDS 35.0%
! AACTTTTGGCCGTTAAATCA+AGG + chr8.2:35920728-35920747 MS.gene009009:intron 35.0%
! ATAATCCACCACCAAACTTT+TGG + chr8.2:35920714-35920733 MS.gene009009:intron 35.0%
! GAATGAGATTCAGAAAGTGT+TGG + chr8.2:35920454-35920473 MS.gene009009:CDS 35.0%
! TACCATGATTCTCCTGTTTT+TGG - chr8.2:35919026-35919045 None:intergenic 35.0%
!! ACCATGATTCTCCTGTTTTT+GGG - chr8.2:35919025-35919044 None:intergenic 35.0%
!! CATCACTTTTCCTTTGGATT+TGG + chr8.2:35920042-35920061 MS.gene009009:intron 35.0%
!! CCTTGCACTGTTGATAATAT+AGG - chr8.2:35920498-35920517 None:intergenic 35.0%
!! TTAATGTTGGTGTCAAATGC+CGG + chr8.2:35920201-35920220 MS.gene009009:intron 35.0%
AAGGGGAAGACATTATGTGA+AGG - chr8.2:35920649-35920668 None:intergenic 40.0%
AGAATCGAAAGGAATCGAGA+AGG - chr8.2:35920598-35920617 None:intergenic 40.0%
AGCAAAAGGACCAAATCCAA+AGG - chr8.2:35920055-35920074 None:intergenic 40.0%
CAGACACCGACATTTAATGT+TGG + chr8.2:35920188-35920207 MS.gene009009:intron 40.0%
CATTCACCCTAATCACATCA+TGG - chr8.2:35920439-35920458 None:intergenic 40.0%
GAATAGCACGATGATCTTTG+TGG - chr8.2:35919897-35919916 None:intergenic 40.0%
GATCTGTAATTGACTGTTGG+TGG - chr8.2:35921426-35921445 None:intergenic 40.0%
GCTGATCTGTAATTGACTGT+TGG - chr8.2:35921429-35921448 None:intergenic 40.0%
TCCTTTCGATTCTGTTCACT+TGG + chr8.2:35920605-35920624 MS.gene009009:CDS 40.0%
TGATGTTCTTCAGTCTTCCA+TGG - chr8.2:35921374-35921393 None:intergenic 40.0%
TGGAAGACTGAAGAACATCA+AGG + chr8.2:35921374-35921393 MS.gene009009:CDS 40.0%
TTGAGAAGAGGTTTCAACCA+TGG - chr8.2:35919763-35919782 None:intergenic 40.0%
TTTAACGGCCAAAAGTTTGG+TGG - chr8.2:35920725-35920744 None:intergenic 40.0%
! AAGAAACGCTCTTTGAGAAG+AGG - chr8.2:35919775-35919794 None:intergenic 40.0%
! CAAAGATCATCGTGCTATTC+AGG + chr8.2:35919897-35919916 MS.gene009009:CDS 40.0%
! GTGTGTGCTTGTTACAGATA+AGG + chr8.2:35920402-35920421 MS.gene009009:intron 40.0%
! TGTGCTTGTTACAGATAAGG+AGG + chr8.2:35920405-35920424 MS.gene009009:intron 40.0%
!! CAGAAAGTGTTGGACATAAC+AGG + chr8.2:35920464-35920483 MS.gene009009:CDS 40.0%
!! GACTTTTGAGTCTATGGCAT+TGG + chr8.2:35921224-35921243 MS.gene009009:intron 40.0%
!!! ATTTTTTTGAAGGGTGCTGG+AGG + chr8.2:35919709-35919728 MS.gene009009:intron 40.0%
ACACCAACATGTGTCAGACA+GGG - chr8.2:35920168-35920187 None:intergenic 45.0%
AGAAGAGGTTTCAACCATGG+TGG - chr8.2:35919760-35919779 None:intergenic 45.0%
AGCTCACACACTCTCATTGT+TGG + chr8.2:35919094-35919113 MS.gene009009:intron 45.0%
ATGCGACACTGAACTAGACA+CGG - chr8.2:35920314-35920333 None:intergenic 45.0%
ATTCTGTTCACTTGGCTGCA+AGG + chr8.2:35920613-35920632 MS.gene009009:CDS 45.0%
CAATCTAAACCATCGATGCG+TGG - chr8.2:35920135-35920154 None:intergenic 45.0%
GCCAAGTGAACAGAATCGAA+AGG - chr8.2:35920609-35920628 None:intergenic 45.0%
GCCCAAAAACAGGAGAATCA+TGG + chr8.2:35919021-35919040 MS.gene009009:CDS 45.0%
GGGTTGTGTTCTTGAATGAG+AGG + chr8.2:35920516-35920535 MS.gene009009:CDS 45.0%
TTGATTGTAGTGGCAGACAC+CGG - chr8.2:35920223-35920242 None:intergenic 45.0%
! CACCTGTTTTCCTCATCATC+AGG - chr8.2:35919736-35919755 None:intergenic 45.0%
! CTGATGATGAGGAAAACAGG+TGG + chr8.2:35919734-35919753 MS.gene009009:CDS 45.0%
! CTGTAATTGACTGTTGGTGG+TGG - chr8.2:35921423-35921442 None:intergenic 45.0%
! GTCCTGATGATGAGGAAAAC+AGG + chr8.2:35919731-35919750 MS.gene009009:CDS 45.0%
!! GAGCTGACTTGTTCTTCTTC+TGG - chr8.2:35921302-35921321 None:intergenic 45.0%
!!! AGTGTTGGTGACACCTTTTC+CGG - chr8.2:35920555-35920574 None:intergenic 45.0%
CTCGCAGACTTCACAAGTGT+TGG - chr8.2:35920570-35920589 None:intergenic 50.0%
GACACCAACATGTGTCAGAC+AGG - chr8.2:35920169-35920188 None:intergenic 50.0%
GTTCCCTGTCTGACACATGT+TGG + chr8.2:35920162-35920181 MS.gene009009:intron 50.0%
TCTAAACCATCGATGCGTGG+TGG - chr8.2:35920132-35920151 None:intergenic 50.0%
! AACGGCCAAAAGTTTGGTGG+TGG - chr8.2:35920722-35920741 None:intergenic 50.0%
!! ACTGTTGGTGGTGGTGTTGA+AGG - chr8.2:35921414-35921433 None:intergenic 50.0%
!!! GTGTTGGTGACACCTTTTCC+GGG - chr8.2:35920554-35920573 None:intergenic 50.0%
AATTCCTCATCGTGCCCCGA+TGG + chr8.2:35921464-35921483 MS.gene009009:CDS 55.0%
AGGAAAACAGGTGGCCACCA+TGG + chr8.2:35919743-35919762 MS.gene009009:CDS 55.0%
ATTCCTCATCGTGCCCCGAT+GGG + chr8.2:35921465-35921484 MS.gene009009:CDS 55.0%
TCGTAACCACCACGCATCGA+TGG + chr8.2:35920123-35920142 MS.gene009009:intron 55.0%
TGAATGAGAGGCCTCAGCCA+AGG + chr8.2:35920528-35920547 MS.gene009009:CDS 55.0%
TGCAGCACTAGTCCTCCCAT+CGG - chr8.2:35921483-35921502 None:intergenic 55.0%
! TGCTGGAGGTCCTGATGATG+AGG + chr8.2:35919723-35919742 MS.gene009009:CDS 55.0%
CACAGCAGCAGTTGCAGCCA+TGG + chr8.2:35921354-35921373 MS.gene009009:CDS 60.0%
CAGCACTAGTCCTCCCATCG+GGG - chr8.2:35921481-35921500 None:intergenic 60.0%
GCAGCACTAGTCCTCCCATC+GGG - chr8.2:35921482-35921501 None:intergenic 60.0%
! GTGACACCTTTTCCGGGCCT+TGG - chr8.2:35920548-35920567 None:intergenic 60.0%
CCTCAGCCAAGGCCCGGAAA+AGG + chr8.2:35920539-35920558 MS.gene009009:CDS 65.0%
! CCTTTTCCGGGCCTTGGCTG+AGG - chr8.2:35920542-35920561 None:intergenic 65.0%
CCTCATCGTGCCCCGATGGG+AGG + chr8.2:35921468-35921487 MS.gene009009:CDS 70.0%
CCTCCCATCGGGGCACGATG+AGG - chr8.2:35921471-35921490 None:intergenic 70.0%
GAGAGGCCTCAGCCAAGGCC+CGG + chr8.2:35920533-35920552 MS.gene009009:CDS 70.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 35918983 35921509 35918983 ID=MS.gene009009
chr8.2 mRNA 35918983 35921509 35918983 ID=MS.gene009009.t1;Parent=MS.gene009009
chr8.2 exon 35918983 35919042 35918983 ID=MS.gene009009.t1.exon1;Parent=MS.gene009009.t1
chr8.2 CDS 35918983 35919042 35918983 ID=cds.MS.gene009009.t1;Parent=MS.gene009009.t1
chr8.2 exon 35919721 35919918 35919721 ID=MS.gene009009.t1.exon2;Parent=MS.gene009009.t1
chr8.2 CDS 35919721 35919918 35919721 ID=cds.MS.gene009009.t1;Parent=MS.gene009009.t1
chr8.2 exon 35920419 35920634 35920419 ID=MS.gene009009.t1.exon3;Parent=MS.gene009009.t1
chr8.2 CDS 35920419 35920634 35920419 ID=cds.MS.gene009009.t1;Parent=MS.gene009009.t1
chr8.2 exon 35921276 35921509 35921276 ID=MS.gene009009.t1.exon4;Parent=MS.gene009009.t1
chr8.2 CDS 35921276 35921509 35921276 ID=cds.MS.gene009009.t1;Parent=MS.gene009009.t1
Gene Sequence

>MS.gene009009

ATGGCGTTTGAAAATCAAGACACTGTCCGTGAAATTAAGCCCAAAAACAGGAGAATCATGGTAAATCAAAACACTTTCTTCAATTTTTTAATAAATGTTTTGTTTTCATTTAGCTCACACACTCTCATTGTTGGTTCATTATTTGTGAATTGATTTTGATAAACTAGTGTTAAATTTTTTGGAAATGCAATGATTTTGTGTATTGTTTGTGTTTTTGAATTCTGGGTCTGATTCAAAATTTGATTTTTTTTTTTCAGTTTTATTTTTATTTAGGTTGTTTTCATTATTTGTGACTTGACTTGATGAACTAGTGTTAATTTTTTGGGAATGCAATGATTTTGGCTATTAGTACTGTTTTTGAATTTTGGGTCTGATTCAAAATTTATTTTTTTTACAGAAAATTTTCATTTTTTAATCCAAGAATCTCATTGTGTGTTCAATAGTTGAGTTGACTTGAAGAATTAGCGTTAATTTTTAATTTTGTTTCGAATGTAATGTTTTGGGGTTTTATTTGTGTTTTTAAATTCTGGGTCTGATTCAAAATTTGTTTTTTTTACACAAGTTTTATTTTTATTTAGCTCAGACTCGACTCTCATTGTGTGTTCATTATTTTATGAGTTAACTTGGAAAATTATTGATAATTTTAGAGAAAAAAAAAATTGGGAATGCAATGATTTTGTGTATTATTTGTGATTTTGAATTGTGGGGCTGATTCAAAATTTGATAATTTTTTTGAAGGGTGCTGGAGGTCCTGATGATGAGGAAAACAGGTGGCCACCATGGTTGAAACCTCTTCTCAAAGAGCGTTTCTTTGTTCAATGCAAGTTGCATGCTGATTCACACAAGAGTGAGTGCAATATGTATTGTTTGGATTGTATGAATGGTGCTCTTTGCTCACTCTGTCTCAATTACCACAAAGATCATCGTGCTATTCAGGTTTGTTAGTTGTTACAACCATTGAATTCATCAAAGTTGTGTGATTTCAATTGTTGTTTGTAGTTGTTGTTCTTTTACCCTTTGACACATTTATTGTATTCCTGTTTTTGTTGTCAGAAAAACCATCACTTTTCCTTTGGATTTGGTCCTTTTGCTGTTTTTAATTTTTACACAACCAATTATCCATAAATTCCCATTTATTGTTCGTAACCACCACGCATCGATGGTTTAGATTGAATGTGTGTTCCCTGTCTGACACATGTTGGTGTCAGACACCGACATTTAATGTTGGTGTCAAATGCCGGTGTCTGCCACTACAATCAATTCAATTATTTTTATTTTTAATATTATTATTGATGACAATGAATTATTGTCATTGTTGTGTCTGGTGTCCGTGTCTAGTTCAGTGTCGCATAAGTGAAAAATGTTTTAGCTTTTCAATGCAATAACATGGTTATTCCTTTCTAATGATCTCTGTTGTTTGTGTGTGCTTGTTACAGATAAGGAGGTCTTCATACCATGATGTGATTAGGGTGAATGAGATTCAGAAAGTGTTGGACATAACAGGTGTTCAAACCTATATTATCAACAGTGCAAGGGTTGTGTTCTTGAATGAGAGGCCTCAGCCAAGGCCCGGAAAAGGTGTCACCAACACTTGTGAAGTCTGCGAGCGTAGCCTTCTCGATTCCTTTCGATTCTGTTCACTTGGCTGCAAGGTATTTACATTCCTTCACATAATGTCTTCCCCTTCTAACCATTTGAATAAGATTAACTCCCAAAATAGTAGTAGAAATAATAATCCACCACCAAACTTTTGGCCGTTAAATCAAGGATTTTGATGTTTCAATTTGTTAGTGATAATATGATTGAAGTTGCATTGATCGCATTTGTTTTGATTGCAATTTTGGATATTATCAAGACCTCAATGTTAATGCATTGAGGTCACATCAACTACATTATTAGTCCTCATAAGAATAGTCTATAATAGTTGCATTTGACCGTAATTCTCTAAAATACAAGACTCAACATCATTATTATTATTTTTATTTTTTTATCAATCCACTATTTAAAATATTGATCAATGGTATCTCTTTTTTAAGAAAAAACTATTTGCTTTATTTTCAAGCTAGCACTTAAAAGTGGGTTGACTTTGCTTATAATCATGAATGCTAATATAGGTTTATTTTTAACTTTTCCATTTGTTCCTATACCCAACATTTGAAATTTTGTCATTTCAATATGGACCCTTTTGCATTCAATTCAATTTAATTTTATTGACTTGTCAAGATAATTTATTCTTGTTTTGACTTTTGAGTCTATGGCATTGGATACTAATCTATGCAACTATGAATTCTAGATTGTTGGAACTTCAATGAATTTCCAGAAGAAGAACAAGTCAGCTCGTGCTTCAATGATATCAGACTCAGAGGATTCACACAGCAGCAGTTGCAGCCATGGAAGACTGAAGAACATCAAGGTGCAAAGTTTCACTCCTTCAACACCACCACCAACAGTCAATTACAGATCAGCCAAAAGAAGAAAAGGAATTCCTCATCGTGCCCCGATGGGAGGACTAGTGCTGCAATACTAA
Protein sequence

>MS.gene009009.t1

MAFENQDTVREIKPKNRRIMGAGGPDDEENRWPPWLKPLLKERFFVQCKLHADSHKSECNMYCLDCMNGALCSLCLNYHKDHRAIQIRRSSYHDVIRVNEIQKVLDITGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVCERSLLDSFRFCSLGCKIVGTSMNFQKKNKSARASMISDSEDSHSSSCSHGRLKNIKVQSFTPSTPPPTVNYRSAKRRKGIPHRAPMGGLVLQY