Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009010.t1 | AET03267.1 | 97.7 | 213 | 5 | 0 | 22 | 234 | 100 | 312 | 5.00E-108 | 400.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009010.t1 | Q9SK91 | 53.4 | 206 | 92 | 2 | 23 | 228 | 102 | 303 | 5.2e-53 | 209.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009010.t1 | G7LH18 | 97.7 | 213 | 5 | 0 | 22 | 234 | 100 | 312 | 3.6e-108 | 400.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene009010.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009010.t1 | MTR_8g066770 | 97.863 | 234 | 5 | 0 | 1 | 234 | 79 | 312 | 1.31e-172 | 477 |
MS.gene009010.t1 | MTR_3g099620 | 54.425 | 226 | 84 | 3 | 16 | 228 | 96 | 315 | 2.10e-81 | 246 |
MS.gene009010.t1 | MTR_7g113830 | 52.466 | 223 | 93 | 3 | 16 | 231 | 96 | 312 | 1.77e-73 | 226 |
MS.gene009010.t1 | MTR_1g082480 | 53.052 | 213 | 85 | 2 | 29 | 231 | 129 | 336 | 3.75e-73 | 226 |
MS.gene009010.t1 | MTR_5g064950 | 50.679 | 221 | 102 | 3 | 15 | 230 | 79 | 297 | 5.05e-69 | 214 |
MS.gene009010.t1 | MTR_1g082480 | 53.261 | 184 | 71 | 2 | 29 | 202 | 129 | 307 | 1.63e-61 | 196 |
MS.gene009010.t1 | MTR_5g064950 | 50.259 | 193 | 89 | 3 | 15 | 202 | 79 | 269 | 8.45e-59 | 188 |
MS.gene009010.t1 | MTR_0194s0050 | 46.610 | 236 | 109 | 6 | 9 | 231 | 156 | 387 | 9.70e-58 | 187 |
MS.gene009010.t1 | MTR_8g024210 | 49.500 | 200 | 92 | 2 | 26 | 225 | 171 | 361 | 1.48e-53 | 176 |
MS.gene009010.t1 | MTR_2g022280 | 36.782 | 174 | 107 | 2 | 36 | 208 | 1 | 172 | 4.41e-36 | 126 |
MS.gene009010.t1 | MTR_3g090850 | 36.548 | 197 | 84 | 3 | 34 | 189 | 99 | 295 | 5.48e-35 | 127 |
MS.gene009010.t1 | MTR_1g028470 | 30.909 | 220 | 132 | 2 | 11 | 210 | 62 | 281 | 4.45e-29 | 110 |
MS.gene009010.t1 | MTR_5g030430 | 26.943 | 193 | 134 | 3 | 14 | 206 | 474 | 659 | 2.99e-13 | 68.9 |
MS.gene009010.t1 | MTR_1g112680 | 28.934 | 197 | 109 | 7 | 16 | 194 | 305 | 488 | 2.18e-12 | 66.2 |
MS.gene009010.t1 | MTR_8g067280 | 29.319 | 191 | 126 | 4 | 16 | 206 | 447 | 628 | 6.61e-12 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009010.t1 | AT1G72210 | 56.872 | 211 | 82 | 3 | 25 | 231 | 114 | 319 | 5.13e-72 | 222 |
MS.gene009010.t1 | AT1G22490 | 53.922 | 204 | 90 | 2 | 25 | 228 | 104 | 303 | 2.88e-70 | 217 |
MS.gene009010.t1 | AT5G46690 | 55.263 | 228 | 80 | 4 | 23 | 228 | 75 | 302 | 2.78e-65 | 205 |
MS.gene009010.t1 | AT1G72210 | 56.593 | 182 | 70 | 3 | 25 | 202 | 114 | 290 | 6.10e-60 | 191 |
MS.gene009010.t1 | AT1G22490 | 53.371 | 178 | 79 | 2 | 25 | 202 | 104 | 277 | 1.07e-58 | 188 |
MS.gene009010.t1 | AT3G24140 | 42.797 | 236 | 121 | 3 | 3 | 225 | 162 | 396 | 4.85e-54 | 179 |
MS.gene009010.t1 | AT3G24140 | 42.797 | 236 | 121 | 3 | 3 | 225 | 162 | 396 | 6.58e-54 | 179 |
MS.gene009010.t1 | AT5G46690 | 53.465 | 202 | 72 | 4 | 23 | 202 | 75 | 276 | 1.85e-52 | 171 |
MS.gene009010.t1 | AT4G01460 | 44.118 | 204 | 111 | 2 | 26 | 228 | 105 | 306 | 6.61e-49 | 163 |
MS.gene009010.t1 | AT4G01460 | 44.118 | 204 | 111 | 2 | 26 | 228 | 105 | 306 | 6.61e-49 | 163 |
MS.gene009010.t1 | AT5G65320 | 41.429 | 210 | 102 | 4 | 30 | 228 | 96 | 295 | 1.69e-44 | 151 |
MS.gene009010.t1 | AT2G46810 | 43.216 | 199 | 99 | 4 | 27 | 223 | 112 | 298 | 1.95e-40 | 140 |
MS.gene009010.t1 | AT3G61950 | 43.350 | 203 | 94 | 5 | 26 | 223 | 117 | 303 | 2.76e-40 | 140 |
MS.gene009010.t1 | AT2G46810 | 43.434 | 198 | 100 | 4 | 27 | 223 | 172 | 358 | 3.85e-40 | 141 |
MS.gene009010.t1 | AT5G65320 | 42.623 | 183 | 85 | 3 | 30 | 202 | 96 | 268 | 4.34e-40 | 139 |
MS.gene009010.t1 | AT2G46810 | 43.216 | 199 | 99 | 4 | 27 | 223 | 184 | 370 | 7.48e-40 | 141 |
MS.gene009010.t1 | AT3G61950 | 43.350 | 203 | 94 | 5 | 26 | 223 | 168 | 354 | 9.36e-40 | 140 |
MS.gene009010.t1 | AT3G61950 | 44.970 | 169 | 73 | 4 | 25 | 189 | 116 | 268 | 2.44e-37 | 132 |
MS.gene009010.t1 | AT3G61950 | 45.238 | 168 | 72 | 4 | 26 | 189 | 168 | 319 | 9.70e-37 | 132 |
MS.gene009010.t1 | AT2G46810 | 44.944 | 178 | 84 | 4 | 27 | 202 | 112 | 277 | 5.07e-35 | 127 |
MS.gene009010.t1 | AT3G06120 | 34.659 | 176 | 103 | 2 | 36 | 202 | 1 | 173 | 2.33e-31 | 114 |
MS.gene009010.t1 | AT5G53210 | 62.338 | 77 | 28 | 1 | 27 | 103 | 94 | 169 | 7.89e-26 | 103 |
MS.gene009010.t1 | AT5G53210 | 66.667 | 69 | 22 | 1 | 27 | 95 | 94 | 161 | 8.91e-26 | 103 |
MS.gene009010.t1 | AT3G61950 | 67.442 | 43 | 14 | 0 | 25 | 67 | 167 | 209 | 5.87e-13 | 66.2 |
MS.gene009010.t1 | AT3G61950 | 67.442 | 43 | 14 | 0 | 25 | 67 | 167 | 209 | 5.87e-13 | 66.2 |
MS.gene009010.t1 | AT1G32640 | 25.490 | 204 | 109 | 6 | 16 | 208 | 437 | 608 | 9.75e-11 | 61.6 |
Find 44 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTCAATTCTTCCAAGTAAA+TGG | 0.199817 | 8.2:+35967448 | None:intergenic |
TTGTCCTAGTGAGAATTCTA+AGG | 0.334781 | 8.2:+35968245 | None:intergenic |
ACCCTTTGAACATAGGATTC+AGG | 0.351099 | 8.2:+35969253 | None:intergenic |
ATGTGTATTTGTTAGGTGTT+TGG | 0.351401 | 8.2:+35968326 | None:intergenic |
GTCTTGGATGTGTATTTGTT+AGG | 0.355555 | 8.2:+35968319 | None:intergenic |
AGCTATGGCAGCTTTGGTCT+TGG | 0.365189 | 8.2:+35968303 | None:intergenic |
TCTTTGTTCTTACAAACTCT+TGG | 0.388402 | 8.2:+35969370 | None:intergenic |
TGTGTATTTGTTAGGTGTTT+GGG | 0.389980 | 8.2:+35968327 | None:intergenic |
TAGCTCCTTCACAAACTCTA+TGG | 0.424567 | 8.2:+35968483 | None:intergenic |
ACAGCAGTTCACCATTTACT+TGG | 0.428976 | 8.2:-35967459 | MS.gene009010:CDS |
GATATCAGCTATGGCAGCTT+TGG | 0.431877 | 8.2:+35968297 | None:intergenic |
ACTAATTTAGTTAGTTGTCC+TGG | 0.441622 | 8.2:+35968220 | None:intergenic |
TGTCACTACCATACAACCTT+TGG | 0.451551 | 8.2:-35968155 | MS.gene009010:CDS |
TTCTTCCTTTGCACCACTTG+AGG | 0.453078 | 8.2:+35969406 | None:intergenic |
AAAACAAACCCTTTGAACAT+AGG | 0.458862 | 8.2:+35969246 | None:intergenic |
AGGACAACTAACTAAATTAG+TGG | 0.470600 | 8.2:-35968218 | MS.gene009010:CDS |
GTAGAATACCAAAGGTTGTA+TGG | 0.472728 | 8.2:+35968147 | None:intergenic |
GCCTGAATCCTATGTTCAAA+GGG | 0.476318 | 8.2:-35969254 | MS.gene009010:intron |
AAGTGGTGCAAAGGAAGAAA+AGG | 0.487447 | 8.2:-35969402 | MS.gene009010:CDS |
TTGTGTATCCTCAATATACA+TGG | 0.490488 | 8.2:-35968351 | MS.gene009010:CDS |
CCATTTACTTGGAAGAATTG+AGG | 0.491479 | 8.2:-35967448 | MS.gene009010:CDS |
ATGTATATGAAGGTTGAAGA+AGG | 0.503265 | 8.2:-35967513 | MS.gene009010:intron |
GTTTGGGACCATGTATATTG+AGG | 0.512489 | 8.2:+35968343 | None:intergenic |
GGTGACCAAGCCTCAATAGT+AGG | 0.516200 | 8.2:-35968511 | MS.gene009010:CDS |
CATTGATATGTAGGATGCTA+AGG | 0.516296 | 8.2:+35968176 | None:intergenic |
TTCCAACTTGGTTCAGTAGA+CGG | 0.525532 | 8.2:-35967489 | MS.gene009010:CDS |
TGCCTGAATCCTATGTTCAA+AGG | 0.527020 | 8.2:-35969255 | MS.gene009010:CDS |
CAACTAACTAAATTAGTGGC+TGG | 0.528440 | 8.2:-35968214 | MS.gene009010:CDS |
GTTGAAGAAGGATTCCAACT+TGG | 0.528504 | 8.2:-35967501 | MS.gene009010:CDS |
CACCACCTACTATTGAGGCT+TGG | 0.549608 | 8.2:+35968506 | None:intergenic |
TGGTAGTGACATTGATATGT+AGG | 0.552077 | 8.2:+35968167 | None:intergenic |
TTCCGTCTACTGAACCAAGT+TGG | 0.552934 | 8.2:+35967487 | None:intergenic |
AACAATGAATAATCCTCAAG+TGG | 0.569610 | 8.2:-35969419 | MS.gene009010:CDS |
TGTAACCTCGATATCAGCTA+TGG | 0.576417 | 8.2:+35968288 | None:intergenic |
CAAACCTTAGAATTCTCACT+AGG | 0.582899 | 8.2:-35968249 | MS.gene009010:CDS |
ATAATCCTCAAGTGGTGCAA+AGG | 0.583756 | 8.2:-35969411 | MS.gene009010:CDS |
TATGGCACCACCTACTATTG+AGG | 0.605310 | 8.2:+35968501 | None:intergenic |
ATTCTACTCTATCAGTGCCA+AGG | 0.611555 | 8.2:-35968131 | MS.gene009010:intron |
ATTCTCACTAGGACAAGACC+AGG | 0.613739 | 8.2:-35968238 | MS.gene009010:CDS |
CTGATAGAGTAGAATACCAA+AGG | 0.629072 | 8.2:+35968139 | None:intergenic |
AGCACAAAACAATGAAGACA+TGG | 0.633394 | 8.2:-35968404 | MS.gene009010:CDS |
AGCTGCCATAGCTGATATCG+AGG | 0.641430 | 8.2:-35968293 | MS.gene009010:CDS |
GACCAAGCCTCAATAGTAGG+TGG | 0.661400 | 8.2:-35968508 | MS.gene009010:CDS |
TGGTGCCATAGAGTTTGTGA+AGG | 0.669387 | 8.2:-35968488 | MS.gene009010:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTTATTTTTATTTTAA+TGG | - | chr8.2:35969140-35969159 | MS.gene009010:intron | 0.0% |
!! | ATATTTAGCTAAAATATATA+TGG | - | chr8.2:35969272-35969291 | MS.gene009010:CDS | 10.0% |
!! | TTATTTATTTATGTATATGA+AGG | - | chr8.2:35969332-35969351 | MS.gene009010:CDS | 10.0% |
!!! | AATTTTTTTGTTTTGTTATA+GGG | - | chr8.2:35968323-35968342 | MS.gene009010:CDS | 10.0% |
!!! | CAATTTTTTTGTTTTGTTAT+AGG | - | chr8.2:35968322-35968341 | MS.gene009010:CDS | 15.0% |
!!! | GAATTTTCATAATTTATACA+AGG | + | chr8.2:35969215-35969234 | None:intergenic | 15.0% |
!! | AAAGCAAAAGAAAGAAAAAA+TGG | + | chr8.2:35967903-35967922 | None:intergenic | 20.0% |
!! | ATTACTATCATATCAAATGA+AGG | + | chr8.2:35968767-35968786 | None:intergenic | 20.0% |
!! | GAAAATAATTAGAGATAGAA+AGG | + | chr8.2:35968982-35969001 | None:intergenic | 20.0% |
!!! | AATTTTTGTTGTTTATCACT+TGG | + | chr8.2:35969090-35969109 | None:intergenic | 20.0% |
!!! | TACTTCATTTTTTTGTTGTT+GGG | - | chr8.2:35967657-35967676 | MS.gene009010:intron | 20.0% |
!!! | TATTCTTTACATGTTCTAAA+TGG | - | chr8.2:35968270-35968289 | MS.gene009010:CDS | 20.0% |
! | AATGTTACCATAATTTCAAC+TGG | + | chr8.2:35968133-35968152 | None:intergenic | 25.0% |
! | ATGTTACCATAATTTCAACT+GGG | + | chr8.2:35968132-35968151 | None:intergenic | 25.0% |
! | TACACAAAAAATTGTGCAAA+AGG | + | chr8.2:35968491-35968510 | None:intergenic | 25.0% |
!! | TATACATGAAGCTTTTCAAA+TGG | + | chr8.2:35968243-35968262 | None:intergenic | 25.0% |
!!! | GTACTTCATTTTTTTGTTGT+TGG | - | chr8.2:35967656-35967675 | MS.gene009010:intron | 25.0% |
!!! | GTTCATTCATTTGTTTTCTA+CGG | + | chr8.2:35967556-35967575 | None:intergenic | 25.0% |
!!! | TAATGTTTTTGATGTCTTTG+AGG | + | chr8.2:35968105-35968124 | None:intergenic | 25.0% |
!!! | TTCTTTCTTTTGCTTTTGTA+TGG | - | chr8.2:35967907-35967926 | MS.gene009010:intron | 25.0% |
AAAACAAACCCTTTGAACAT+AGG | + | chr8.2:35967612-35967631 | None:intergenic | 30.0% | |
AACAATGAATAATCCTCAAG+TGG | - | chr8.2:35967436-35967455 | MS.gene009010:CDS | 30.0% | |
ACAAAAAATTGTGCAAAAGG+TGG | + | chr8.2:35968488-35968507 | None:intergenic | 30.0% | |
ACACTTTATGACTATCAATG+AGG | - | chr8.2:35967797-35967816 | MS.gene009010:intron | 30.0% | |
ACTAATTTAGTTAGTTGTCC+TGG | + | chr8.2:35968638-35968657 | None:intergenic | 30.0% | |
AGGACAACTAACTAAATTAG+TGG | - | chr8.2:35968637-35968656 | MS.gene009010:intron | 30.0% | |
ATCAATATAGTTGCATACCT+TGG | + | chr8.2:35968744-35968763 | None:intergenic | 30.0% | |
ATGTATATGAAGGTTGAAGA+AGG | - | chr8.2:35969342-35969361 | MS.gene009010:CDS | 30.0% | |
ATTTCCCTTAATAGCAAAGA+TGG | - | chr8.2:35967705-35967724 | MS.gene009010:intron | 30.0% | |
GCAAAAGAAAGAAAAAATGG+AGG | + | chr8.2:35967900-35967919 | None:intergenic | 30.0% | |
TAATGTCCCAGTTGAAATTA+TGG | - | chr8.2:35968123-35968142 | MS.gene009010:intron | 30.0% | |
TCTTTGTTCTTACAAACTCT+TGG | + | chr8.2:35967488-35967507 | None:intergenic | 30.0% | |
TGCTTTGTGAAAGATGTAAT+AGG | - | chr8.2:35967845-35967864 | MS.gene009010:intron | 30.0% | |
TTGTGTATCCTCAATATACA+TGG | - | chr8.2:35968504-35968523 | MS.gene009010:CDS | 30.0% | |
TTTATGACTATCAATGAGGT+GGG | - | chr8.2:35967801-35967820 | MS.gene009010:intron | 30.0% | |
TTTCCCTTAATAGCAAAGAT+GGG | - | chr8.2:35967706-35967725 | MS.gene009010:intron | 30.0% | |
! | AAGCATATTTGTGCATGTTT+TGG | + | chr8.2:35967830-35967849 | None:intergenic | 30.0% |
! | ATGTGTATTTGTTAGGTGTT+TGG | + | chr8.2:35968532-35968551 | None:intergenic | 30.0% |
! | CTGTGATTTAAAACCTTGTT+TGG | + | chr8.2:35967986-35968005 | None:intergenic | 30.0% |
! | TGTGTATTTGTTAGGTGTTT+GGG | + | chr8.2:35968531-35968550 | None:intergenic | 30.0% |
AGCACAAAACAATGAAGACA+TGG | - | chr8.2:35968451-35968470 | MS.gene009010:CDS | 35.0% | |
CAAACCTTAGAATTCTCACT+AGG | - | chr8.2:35968606-35968625 | MS.gene009010:intron | 35.0% | |
CAACTAACTAAATTAGTGGC+TGG | - | chr8.2:35968641-35968660 | MS.gene009010:intron | 35.0% | |
CATTGATATGTAGGATGCTA+AGG | + | chr8.2:35968682-35968701 | None:intergenic | 35.0% | |
CCATTTACTTGGAAGAATTG+AGG | - | chr8.2:35969407-35969426 | MS.gene009010:CDS | 35.0% | |
CCTCAATTCTTCCAAGTAAA+TGG | + | chr8.2:35969410-35969429 | None:intergenic | 35.0% | |
CTGATAGAGTAGAATACCAA+AGG | + | chr8.2:35968719-35968738 | None:intergenic | 35.0% | |
CTTTATGACTATCAATGAGG+TGG | - | chr8.2:35967800-35967819 | MS.gene009010:intron | 35.0% | |
GTAGAATACCAAAGGTTGTA+TGG | + | chr8.2:35968711-35968730 | None:intergenic | 35.0% | |
GTCTTGGATGTGTATTTGTT+AGG | + | chr8.2:35968539-35968558 | None:intergenic | 35.0% | |
TTCCCTTAATAGCAAAGATG+GGG | - | chr8.2:35967707-35967726 | MS.gene009010:intron | 35.0% | |
TTGTCCTAGTGAGAATTCTA+AGG | + | chr8.2:35968613-35968632 | None:intergenic | 35.0% | |
! | TGGTAGTGACATTGATATGT+AGG | + | chr8.2:35968691-35968710 | None:intergenic | 35.0% |
AAGTGGTGCAAAGGAAGAAA+AGG | - | chr8.2:35967453-35967472 | MS.gene009010:CDS | 40.0% | |
ACAGCAGTTCACCATTTACT+TGG | - | chr8.2:35969396-35969415 | MS.gene009010:CDS | 40.0% | |
ACCCTTTGAACATAGGATTC+AGG | + | chr8.2:35967605-35967624 | None:intergenic | 40.0% | |
ATAATCCTCAAGTGGTGCAA+AGG | - | chr8.2:35967444-35967463 | MS.gene009010:CDS | 40.0% | |
ATTCTACTCTATCAGTGCCA+AGG | - | chr8.2:35968724-35968743 | MS.gene009010:intron | 40.0% | |
GCCTGAATCCTATGTTCAAA+GGG | - | chr8.2:35967601-35967620 | MS.gene009010:intron | 40.0% | |
GGATTGAGTCTATGGTTAAG+CGG | + | chr8.2:35968084-35968103 | None:intergenic | 40.0% | |
GTTGAAGAAGGATTCCAACT+TGG | - | chr8.2:35969354-35969373 | MS.gene009010:CDS | 40.0% | |
TAGCTCCTTCACAAACTCTA+TGG | + | chr8.2:35968375-35968394 | None:intergenic | 40.0% | |
TGCCTGAATCCTATGTTCAA+AGG | - | chr8.2:35967600-35967619 | MS.gene009010:intron | 40.0% | |
TGTAACCTCGATATCAGCTA+TGG | + | chr8.2:35968570-35968589 | None:intergenic | 40.0% | |
TGTCACTACCATACAACCTT+TGG | - | chr8.2:35968700-35968719 | MS.gene009010:intron | 40.0% | |
TTCCAACTTGGTTCAGTAGA+CGG | - | chr8.2:35969366-35969385 | MS.gene009010:CDS | 40.0% | |
! | GGGGAGATAGATTCTTTTCT+AGG | - | chr8.2:35967726-35967745 | MS.gene009010:intron | 40.0% |
! | GTCTTTGAGGATTGAGTCTA+TGG | + | chr8.2:35968092-35968111 | None:intergenic | 40.0% |
! | GTTTGGGACCATGTATATTG+AGG | + | chr8.2:35968515-35968534 | None:intergenic | 40.0% |
!! | CTCCCCATCTTTGCTATTAA+GGG | + | chr8.2:35967712-35967731 | None:intergenic | 40.0% |
!! | TCTCCCCATCTTTGCTATTA+AGG | + | chr8.2:35967713-35967732 | None:intergenic | 40.0% |
ACTTCTTGCGCTACCAAACA+AGG | - | chr8.2:35967970-35967989 | MS.gene009010:intron | 45.0% | |
ATTCTCACTAGGACAAGACC+AGG | - | chr8.2:35968617-35968636 | MS.gene009010:intron | 45.0% | |
GATATCAGCTATGGCAGCTT+TGG | + | chr8.2:35968561-35968580 | None:intergenic | 45.0% | |
TATGGCACCACCTACTATTG+AGG | + | chr8.2:35968357-35968376 | None:intergenic | 45.0% | |
TTCCGTCTACTGAACCAAGT+TGG | + | chr8.2:35969371-35969390 | None:intergenic | 45.0% | |
TTCTTCCTTTGCACCACTTG+AGG | + | chr8.2:35967452-35967471 | None:intergenic | 45.0% | |
!! | TGGTGCCATAGAGTTTGTGA+AGG | - | chr8.2:35968367-35968386 | MS.gene009010:CDS | 45.0% |
AGCTGCCATAGCTGATATCG+AGG | - | chr8.2:35968562-35968581 | MS.gene009010:intron | 50.0% | |
CACCACCTACTATTGAGGCT+TGG | + | chr8.2:35968352-35968371 | None:intergenic | 50.0% | |
GACCAAGCCTCAATAGTAGG+TGG | - | chr8.2:35968347-35968366 | MS.gene009010:CDS | 50.0% | |
GGTGACCAAGCCTCAATAGT+AGG | - | chr8.2:35968344-35968363 | MS.gene009010:CDS | 50.0% | |
! | AGCTATGGCAGCTTTGGTCT+TGG | + | chr8.2:35968555-35968574 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 35967422 | 35969455 | 35967422 | ID=MS.gene009010 |
chr8.2 | mRNA | 35967422 | 35969455 | 35967422 | ID=MS.gene009010.t1;Parent=MS.gene009010 |
chr8.2 | exon | 35969255 | 35969455 | 35969255 | ID=MS.gene009010.t1.exon1;Parent=MS.gene009010.t1 |
chr8.2 | CDS | 35969255 | 35969455 | 35969255 | ID=cds.MS.gene009010.t1;Parent=MS.gene009010.t1 |
chr8.2 | exon | 35968132 | 35968533 | 35968132 | ID=MS.gene009010.t1.exon2;Parent=MS.gene009010.t1 |
chr8.2 | CDS | 35968132 | 35968533 | 35968132 | ID=cds.MS.gene009010.t1;Parent=MS.gene009010.t1 |
chr8.2 | exon | 35967422 | 35967523 | 35967422 | ID=MS.gene009010.t1.exon3;Parent=MS.gene009010.t1 |
chr8.2 | CDS | 35967422 | 35967523 | 35967422 | ID=cds.MS.gene009010.t1;Parent=MS.gene009010.t1 |
Gene Sequence |
Protein sequence |