Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009015.t1 | XP_003628788.1 | 95.5 | 378 | 14 | 2 | 1 | 377 | 1 | 376 | 1.30E-158 | 569.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009015.t1 | Q9LQM3 | 68.1 | 389 | 92 | 10 | 7 | 377 | 10 | 384 | 4.4e-94 | 346.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009015.t1 | G7LH15 | 95.5 | 378 | 14 | 2 | 1 | 377 | 1 | 376 | 9.5e-159 | 569.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene009015.t1 | TF | C3H |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009015.t1 | MTR_8g066730 | 98.148 | 378 | 4 | 2 | 1 | 377 | 1 | 376 | 0.0 | 749 |
MS.gene009015.t1 | MTR_8g066730 | 96.564 | 291 | 7 | 2 | 1 | 290 | 1 | 289 | 0.0 | 563 |
MS.gene009015.t1 | MTR_4g113860 | 30.612 | 294 | 141 | 9 | 83 | 375 | 76 | 307 | 5.52e-34 | 128 |
MS.gene009015.t1 | MTR_4g113970 | 36.683 | 199 | 89 | 5 | 92 | 283 | 77 | 245 | 8.11e-34 | 126 |
MS.gene009015.t1 | MTR_4g113940 | 28.866 | 291 | 126 | 6 | 92 | 375 | 54 | 270 | 4.67e-30 | 116 |
MS.gene009015.t1 | MTR_3g050390 | 26.730 | 318 | 137 | 9 | 61 | 375 | 4 | 228 | 8.52e-26 | 104 |
MS.gene009015.t1 | MTR_4g113890 | 36.975 | 119 | 46 | 2 | 83 | 201 | 56 | 145 | 1.21e-16 | 79.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009015.t1 | AT1G32360 | 59.747 | 395 | 125 | 12 | 3 | 377 | 4 | 384 | 2.32e-131 | 382 |
MS.gene009015.t1 | AT3G19360 | 36.755 | 302 | 154 | 10 | 87 | 376 | 98 | 374 | 7.29e-46 | 162 |
MS.gene009015.t1 | AT3G19360 | 36.755 | 302 | 154 | 10 | 87 | 376 | 98 | 374 | 7.29e-46 | 162 |
MS.gene009015.t1 | AT2G35430 | 41.739 | 230 | 63 | 9 | 170 | 377 | 72 | 252 | 2.34e-41 | 146 |
MS.gene009015.t1 | AT2G35430 | 36.782 | 174 | 69 | 7 | 26 | 194 | 31 | 168 | 1.20e-19 | 87.8 |
Find 127 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTGGTGGAGGAGGAGGAGG+TGG | 0.204425 | 8.2:-35999290 | MS.gene009015:CDS |
GGTGGAGGTGGTGGAGGAGG+AGG | 0.223597 | 8.2:-35999296 | MS.gene009015:CDS |
GGTGGCAGTGGTGGTGGTGG+TGG | 0.225391 | 8.2:-35999722 | MS.gene009015:CDS |
GGAGGTGGTGGAGGAGGAGG+AGG | 0.235103 | 8.2:-35999293 | MS.gene009015:CDS |
TATGAATAATAGGTCTTATA+AGG | 0.235365 | 8.2:-35999450 | MS.gene009015:CDS |
AGTTTAGGTCCTGGTGGTTA+TGG | 0.246502 | 8.2:-35999323 | MS.gene009015:CDS |
GGTGGTGGAGGTGGTGGAGG+AGG | 0.265178 | 8.2:-35999299 | MS.gene009015:CDS |
ACTGAGGAAGGTTGTCCTTA+TGG | 0.268283 | 8.2:-35999404 | MS.gene009015:CDS |
TATGGTGGTGGTGGAGGTGG+TGG | 0.279719 | 8.2:-35999305 | MS.gene009015:CDS |
CACATTATCAGCATGAGTTT+TGG | 0.299688 | 8.2:+35997747 | None:intergenic |
GGTGGTGGTGGAGGTGGTGG+AGG | 0.301864 | 8.2:-35999302 | MS.gene009015:CDS |
GGTTATGGTGGTGGTGGAGG+TGG | 0.308759 | 8.2:-35999308 | MS.gene009015:CDS |
CAATTCGAAGGCTTCAAATT+AGG | 0.308899 | 8.2:+35999191 | None:intergenic |
AAATTACAGTTCGTTATATA+AGG | 0.316371 | 8.2:+35999620 | None:intergenic |
CAGATATGGAGGTGGGCTTA+TGG | 0.316746 | 8.2:-35997830 | MS.gene009015:CDS |
GGTTCAGATGTTTATCATCT+TGG | 0.329111 | 8.2:-35997703 | MS.gene009015:CDS |
GATAAAATCAGTAGGATATA+TGG | 0.337131 | 8.2:-35997607 | MS.gene009015:CDS |
GAAAGTGTGGCGATTAGTTT+AGG | 0.346387 | 8.2:-35999338 | MS.gene009015:CDS |
TTGGGGAGAGTATGAATAAT+AGG | 0.346414 | 8.2:-35999460 | MS.gene009015:CDS |
CTAATTTGAAGCCTTCGAAT+TGG | 0.351114 | 8.2:-35999190 | MS.gene009015:CDS |
TGCGTCGGCCGCCGGAGAAT+TGG | 0.373994 | 8.2:-35999577 | MS.gene009015:CDS |
TTCTGATGAGCTCTCTGTCC+TGG | 0.376334 | 8.2:+35997643 | None:intergenic |
CAGCTGGTGCGGCCGCGGTT+GGG | 0.377275 | 8.2:-35999220 | MS.gene009015:CDS |
GCAGCTGGTGCGGCCGCGGT+TGG | 0.388240 | 8.2:-35999221 | MS.gene009015:CDS |
CTGTAGCACCATGAGCAAAA+TGG | 0.399102 | 8.2:+35999108 | None:intergenic |
TGTAATAAGTGGGAGATGAC+TGG | 0.409320 | 8.2:-35999155 | MS.gene009015:CDS |
GGTGGTGGCAGTGGTGGTGG+TGG | 0.409758 | 8.2:-35999725 | MS.gene009015:CDS |
GGTGGTGGTGGCAGTGGTGG+TGG | 0.410897 | 8.2:-35999728 | MS.gene009015:CDS |
GGTGGTTATGGTGGTGGTGG+AGG | 0.415973 | 8.2:-35999311 | MS.gene009015:CDS |
GGTGCGGCCGCGGTTGGGAA+TGG | 0.416021 | 8.2:-35999215 | MS.gene009015:CDS |
ATGACTGGGTATTGTCCCTT+TGG | 0.419828 | 8.2:-35999140 | MS.gene009015:CDS |
ATGAATAATAGGTCTTATAA+GGG | 0.419939 | 8.2:-35999449 | MS.gene009015:CDS |
GGAGGAGGAGGTGGGAGTGT+TGG | 0.423488 | 8.2:-35999281 | MS.gene009015:CDS |
CGGAAGATGAGTATCGTTAC+TGG | 0.423843 | 8.2:-35999847 | MS.gene009015:CDS |
TACTGGAACGGAAACGATGC+TGG | 0.426962 | 8.2:-35999830 | MS.gene009015:CDS |
GGTGTTGTTGTTGTTGCAGC+TGG | 0.426984 | 8.2:-35999236 | MS.gene009015:CDS |
ACTGCAGAATTACACAGATA+TGG | 0.430785 | 8.2:-35997844 | MS.gene009015:intron |
GTTGGTAGTGTTGGTGGTAG+TGG | 0.432301 | 8.2:-35999263 | MS.gene009015:CDS |
GCGGCGGAGCCGCCGATAGC+TGG | 0.440541 | 8.2:-35999895 | MS.gene009015:CDS |
AAACTAGGATTTGTAATAAG+TGG | 0.442008 | 8.2:-35999166 | MS.gene009015:CDS |
GGTGGGAGTGTTGGTAGTGT+TGG | 0.443949 | 8.2:-35999272 | MS.gene009015:CDS |
GGTCAACCGACCAAGCTGAC+TGG | 0.444227 | 8.2:-35999874 | MS.gene009015:CDS |
GACGGTGGTGGTGGCAGTGG+TGG | 0.445426 | 8.2:-35999731 | MS.gene009015:CDS |
AGCCTTCGAATTGGAAAACT+AGG | 0.448493 | 8.2:-35999181 | MS.gene009015:CDS |
GCTATCGGCGGCTCCGCCGC+CGG | 0.448730 | 8.2:+35999898 | None:intergenic |
GGAGTGTGATTGAGCAGCCT+AGG | 0.450759 | 8.2:-35999523 | MS.gene009015:CDS |
GGGAGTGTTGGTAGTGTTGG+TGG | 0.465014 | 8.2:-35999269 | MS.gene009015:CDS |
GTGGTGGAGGAGGAGGAGGT+GGG | 0.465072 | 8.2:-35999289 | MS.gene009015:CDS |
CCGTCTTCAAATTCGCGTGC+AGG | 0.475752 | 8.2:-35999794 | MS.gene009015:CDS |
CAAGACGGTGGTGGTGGCAG+TGG | 0.476611 | 8.2:-35999734 | MS.gene009015:CDS |
GGAGGAGCTGCGTCGGCCGC+CGG | 0.477423 | 8.2:-35999585 | MS.gene009015:CDS |
TCGAATCGCGCAAAAGCGAT+TGG | 0.480919 | 8.2:-35999695 | MS.gene009015:CDS |
CCTGGTGGTTATGGTGGTGG+TGG | 0.482325 | 8.2:-35999314 | MS.gene009015:CDS |
TGTTGCGTCTGACACAAAAC+AGG | 0.484755 | 8.2:-35997779 | MS.gene009015:CDS |
AGTTTCAGATACCGACGGTT+GGG | 0.486443 | 8.2:-35999496 | MS.gene009015:CDS |
GGTCCTGGTGGTTATGGTGG+TGG | 0.487385 | 8.2:-35999317 | MS.gene009015:CDS |
TTACTTCTCGATTTCTTACT+CGG | 0.489176 | 8.2:+35999761 | None:intergenic |
CTTCCGTCGCCCAGTCAGCT+TGG | 0.490823 | 8.2:+35999864 | None:intergenic |
TGTTGCAGCTGGTGCGGCCG+CGG | 0.493113 | 8.2:-35999225 | MS.gene009015:CDS |
GTCAACCGACCAAGCTGACT+GGG | 0.495786 | 8.2:-35999873 | MS.gene009015:CDS |
AACTAGGATTTGTAATAAGT+GGG | 0.496877 | 8.2:-35999165 | MS.gene009015:CDS |
GTTGCATCAAATCCTCCTAC+TGG | 0.500963 | 8.2:-35997724 | MS.gene009015:CDS |
CGAATCGCGCAAAAGCGATT+GGG | 0.506056 | 8.2:-35999694 | MS.gene009015:CDS |
AGTGTTGGTGGTAGTGGTAG+TGG | 0.513157 | 8.2:-35999257 | MS.gene009015:CDS |
ATCGGCGGCTCCGCCGCCGG+TGG | 0.513840 | 8.2:+35999901 | None:intergenic |
CGTCGCCCAGTCAGCTTGGT+CGG | 0.519038 | 8.2:+35999868 | None:intergenic |
AAAGTACAACTATCTCCATA+AGG | 0.520248 | 8.2:+35999389 | None:intergenic |
CAAATCATCACCACCGGCGG+CGG | 0.520822 | 8.2:-35999911 | MS.gene009015:CDS |
TCAGTAGGATATATGGCGAT+TGG | 0.521816 | 8.2:-35997600 | MS.gene009015:CDS |
GTGGCGATTAGTTTAGGTCC+TGG | 0.524638 | 8.2:-35999332 | MS.gene009015:CDS |
ACAATCTCCTGCCAATTCTC+CGG | 0.526020 | 8.2:+35999566 | None:intergenic |
CAATGGAAGGTCTTTGTGAA+GGG | 0.529629 | 8.2:+35997677 | None:intergenic |
GGAGAATTGGCAGGAGATTG+TGG | 0.530968 | 8.2:-35999564 | MS.gene009015:CDS |
AATTCGCAAGACGGTGGTGG+TGG | 0.537605 | 8.2:-35999740 | MS.gene009015:CDS |
TCGGCCGCCGGAGAATTGGC+AGG | 0.541968 | 8.2:-35999573 | MS.gene009015:CDS |
AAAATGGCATTTGTTACCAA+AGG | 0.546912 | 8.2:+35999124 | None:intergenic |
GACAGAGAGCTCATCAGAAG+TGG | 0.547469 | 8.2:-35997639 | MS.gene009015:CDS |
GGTATCTGAAACTCCTCCCT+AGG | 0.552310 | 8.2:+35999506 | None:intergenic |
GGCCTCTGACTCACAATGGA+AGG | 0.553370 | 8.2:+35997664 | None:intergenic |
TTAGGTCCTGGTGGTTATGG+TGG | 0.556983 | 8.2:-35999320 | MS.gene009015:CDS |
GAGTGTGATTGAGCAGCCTA+GGG | 0.557000 | 8.2:-35999522 | MS.gene009015:CDS |
AAATGGCATTTGTTACCAAA+GGG | 0.557541 | 8.2:+35999125 | None:intergenic |
GTAATAAGTGGGAGATGACT+GGG | 0.557999 | 8.2:-35999154 | MS.gene009015:CDS |
AGTAATTCGCAAGACGGTGG+TGG | 0.565878 | 8.2:-35999743 | MS.gene009015:CDS |
TCCATTGTGAGTCAGAGGCC+AGG | 0.568730 | 8.2:-35997661 | MS.gene009015:CDS |
CTATGCTGTAAGTTTCGTGT+GGG | 0.569773 | 8.2:-35999650 | MS.gene009015:CDS |
GACCTTCCATTGTGAGTCAG+AGG | 0.580448 | 8.2:-35997666 | MS.gene009015:CDS |
TATGGAGGTGGGCTTATGGA+AGG | 0.583879 | 8.2:-35997826 | MS.gene009015:CDS |
GAATTACACAGATATGGAGG+TGG | 0.593880 | 8.2:-35997838 | MS.gene009015:CDS |
ACAATGGAAGGTCTTTGTGA+AGG | 0.593936 | 8.2:+35997676 | None:intergenic |
TCCTGGCCTCTGACTCACAA+TGG | 0.594508 | 8.2:+35997660 | None:intergenic |
TGTTGTTGTTGCAGCTGGTG+CGG | 0.594830 | 8.2:-35999231 | MS.gene009015:CDS |
CGACCAAGCTGACTGGGCGA+CGG | 0.595148 | 8.2:-35999867 | MS.gene009015:CDS |
TTGGTCGGTTGACCAGCTAT+CGG | 0.595738 | 8.2:+35999883 | None:intergenic |
GATGAGTATCGTTACTGGAA+CGG | 0.598603 | 8.2:-35999842 | MS.gene009015:CDS |
CAAAACTCATGCTGATAATG+TGG | 0.598802 | 8.2:-35997746 | MS.gene009015:CDS |
GTCGTTCAAATCATCACCAC+CGG | 0.600321 | 8.2:-35999917 | MS.gene009015:CDS |
CCACCACCACCATAACCACC+AGG | 0.606081 | 8.2:+35999314 | None:intergenic |
AGAGCTCATCAGAAGTGGAA+AGG | 0.606297 | 8.2:-35997634 | MS.gene009015:CDS |
GAGTTTCAGATACCGACGGT+TGG | 0.612303 | 8.2:-35999497 | MS.gene009015:CDS |
AAAGTACTCGACCCAACCGT+CGG | 0.614579 | 8.2:+35999485 | None:intergenic |
ACTATGCTGTAAGTTTCGTG+TGG | 0.615988 | 8.2:-35999651 | MS.gene009015:CDS |
ATCGAAGAATCGTGAAAGTG+TGG | 0.618402 | 8.2:-35999351 | MS.gene009015:CDS |
AAGGTCCCGATAAAATCAGT+AGG | 0.622761 | 8.2:-35997615 | MS.gene009015:CDS |
GGAGGAGTTTCAGATACCGA+CGG | 0.623970 | 8.2:-35999501 | MS.gene009015:CDS |
TGTGATTGAGCAGCCTAGGG+AGG | 0.629299 | 8.2:-35999519 | MS.gene009015:CDS |
ATAGTGTGGAGGAGCTGCGT+CGG | 0.631733 | 8.2:-35999592 | MS.gene009015:CDS |
TAAACATCTGAACCAGTAGG+AGG | 0.634383 | 8.2:+35997712 | None:intergenic |
AATTACACAGATATGGAGGT+GGG | 0.635355 | 8.2:-35997837 | MS.gene009015:CDS |
TGATAAACATCTGAACCAGT+AGG | 0.638955 | 8.2:+35997709 | None:intergenic |
TCGAGAAGTAATTCGCAAGA+CGG | 0.639038 | 8.2:-35999749 | MS.gene009015:CDS |
AGAAGTAATTCGCAAGACGG+TGG | 0.641319 | 8.2:-35999746 | MS.gene009015:CDS |
TGAATAATAGGTCTTATAAG+GGG | 0.644881 | 8.2:-35999448 | MS.gene009015:CDS |
CCTGCACGCGAATTTGAAGA+CGG | 0.647659 | 8.2:+35999794 | None:intergenic |
TGGCTGCTCATGAAGAAGAG+AGG | 0.650335 | 8.2:-35999544 | MS.gene009015:CDS |
ACAATGGATTACAACAGAGA+CGG | 0.651622 | 8.2:-35999944 | MS.gene009015:CDS |
ATGGAAGGAGAAAGCAGAGA+CGG | 0.651866 | 8.2:-35997811 | MS.gene009015:CDS |
ATCTCCTGCCAATTCTCCGG+CGG | 0.654680 | 8.2:+35999569 | None:intergenic |
GCGATTAGTTTAGGTCCTGG+TGG | 0.657986 | 8.2:-35999329 | MS.gene009015:CDS |
GTTCAAATCATCACCACCGG+CGG | 0.671677 | 8.2:-35999914 | MS.gene009015:CDS |
GTCGGTTGACCAGCTATCGG+CGG | 0.673668 | 8.2:+35999886 | None:intergenic |
GCAGAATTACACAGATATGG+AGG | 0.676863 | 8.2:-35997841 | MS.gene009015:intron |
ATTAGGTCCATTCCCAACCG+CGG | 0.701157 | 8.2:+35999208 | None:intergenic |
CTTCTCGATTTCTTACTCGG+CGG | 0.707380 | 8.2:+35999764 | None:intergenic |
TATGCTGTAAGTTTCGTGTG+GGG | 0.708514 | 8.2:-35999649 | MS.gene009015:CDS |
TGGAACGGAAACGATGCTGG+AGG | 0.723504 | 8.2:-35999827 | MS.gene009015:CDS |
GTTGCGTCTGACACAAAACA+GGG | 0.785414 | 8.2:-35997778 | MS.gene009015:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GATTAAAGATTTTAATTTTA+TGG | - | chr8.2:35998479-35998498 | MS.gene009015:intron | 10.0% |
!!! | TTTTAATTTTATGGTAATTG+AGG | - | chr8.2:35998488-35998507 | MS.gene009015:intron | 15.0% |
!! | AAATTACAGTTCGTTATATA+AGG | + | chr8.2:35997906-35997925 | None:intergenic | 20.0% |
!! | ACATAACAAAATCATCAAAA+TGG | + | chr8.2:35998453-35998472 | None:intergenic | 20.0% |
!!! | ATATATCCTACTGATTTTAT+CGG | + | chr8.2:35999917-35999936 | None:intergenic | 20.0% |
!!! | ATGAATAATAGGTCTTATAA+GGG | - | chr8.2:35998074-35998093 | MS.gene009015:intron | 20.0% |
!!! | GGTTTTTTCTTCATTTAATA+TGG | - | chr8.2:35998660-35998679 | MS.gene009015:intron | 20.0% |
!!! | TATGAATAATAGGTCTTATA+AGG | - | chr8.2:35998073-35998092 | MS.gene009015:intron | 20.0% |
!!! | TTGTAAGAAATTTTATACTG+AGG | - | chr8.2:35998103-35998122 | MS.gene009015:intron | 20.0% |
! | AAAATGTATATGTGCATGTT+TGG | + | chr8.2:35999543-35999562 | None:intergenic | 25.0% |
! | AAACTAGGATTTGTAATAAG+TGG | - | chr8.2:35998357-35998376 | MS.gene009015:intron | 25.0% |
! | AACTAGGATTTGTAATAAGT+GGG | - | chr8.2:35998358-35998377 | MS.gene009015:intron | 25.0% |
! | AAGAAAAAACCAATCTTGTA+TGG | + | chr8.2:35998651-35998670 | None:intergenic | 25.0% |
! | ATGAAAAGTAATCGCAAAAA+AGG | + | chr8.2:35999036-35999055 | None:intergenic | 25.0% |
! | GATAAAATCAGTAGGATATA+TGG | - | chr8.2:35999916-35999935 | MS.gene009015:CDS | 25.0% |
!! | AAGAAATTTTATACTGAGGA+AGG | - | chr8.2:35998107-35998126 | MS.gene009015:intron | 25.0% |
!! | ATTTGAATTTGAAGCATACA+AGG | + | chr8.2:35999062-35999081 | None:intergenic | 25.0% |
!! | GTTATAAATAGTTTGTGTTG+TGG | - | chr8.2:35998560-35998579 | MS.gene009015:intron | 25.0% |
!! | TACCATTTGGATACAATTTT+GGG | - | chr8.2:35998602-35998621 | MS.gene009015:intron | 25.0% |
!! | TCTTTTTATCCATACAAGAT+TGG | - | chr8.2:35998639-35998658 | MS.gene009015:intron | 25.0% |
!! | TGAATAATAGGTCTTATAAG+GGG | - | chr8.2:35998075-35998094 | MS.gene009015:intron | 25.0% |
!! | TTACCATTTGGATACAATTT+TGG | - | chr8.2:35998601-35998620 | MS.gene009015:intron | 25.0% |
!! | TTTTCATTGTGCAAAACATA+AGG | + | chr8.2:35998928-35998947 | None:intergenic | 25.0% |
!! | TTTTCTTAATCAGAAAGTGA+AGG | + | chr8.2:35999092-35999111 | None:intergenic | 25.0% |
!! | TTTTGATATGTATGTGAATG+TGG | - | chr8.2:35998783-35998802 | MS.gene009015:intron | 25.0% |
!!! | ATAGAAAGTGCTATTAGAAT+TGG | - | chr8.2:35998534-35998553 | MS.gene009015:intron | 25.0% |
!!! | GATGATTTTGTTATGTGAAT+TGG | - | chr8.2:35998457-35998476 | MS.gene009015:intron | 25.0% |
!!! | TATATCCTACTGATTTTATC+GGG | + | chr8.2:35999916-35999935 | None:intergenic | 25.0% |
AAACATGCACATAATGAACA+AGG | + | chr8.2:35999397-35999416 | None:intergenic | 30.0% | |
AAAGTACAACTATCTCCATA+AGG | + | chr8.2:35998137-35998156 | None:intergenic | 30.0% | |
ACCAAAACAAAATTGACACT+AGG | + | chr8.2:35998740-35998759 | None:intergenic | 30.0% | |
ACTGTAAACCAAAAAACACT+TGG | + | chr8.2:35999009-35999028 | None:intergenic | 30.0% | |
ACTTTCATTGCTTTGATGTT+TGG | - | chr8.2:35999371-35999390 | MS.gene009015:CDS | 30.0% | |
ATTGCATAGATTACTCAAGT+CGG | + | chr8.2:35998844-35998863 | None:intergenic | 30.0% | |
CCAAAACAAAATTGACACTA+GGG | + | chr8.2:35998739-35998758 | None:intergenic | 30.0% | |
GAAAAGAATAGTTTCATGAG+TGG | - | chr8.2:35999132-35999151 | MS.gene009015:CDS | 30.0% | |
GGCTTAAATTGATTATCTGT+CGG | - | chr8.2:35999602-35999621 | MS.gene009015:CDS | 30.0% | |
TTACTTCTCGATTTCTTACT+CGG | + | chr8.2:35997765-35997784 | None:intergenic | 30.0% | |
TTCCCAAAATTGTATCCAAA+TGG | + | chr8.2:35998607-35998626 | None:intergenic | 30.0% | |
TTGTTCATTATGTGCATGTT+TGG | - | chr8.2:35999396-35999415 | MS.gene009015:CDS | 30.0% | |
! | AAAATGGCATTTGTTACCAA+AGG | + | chr8.2:35998402-35998421 | None:intergenic | 30.0% |
! | AAATGGCATTTGTTACCAAA+GGG | + | chr8.2:35998401-35998420 | None:intergenic | 30.0% |
! | TTGATACACGAGTGTTTTAT+TGG | - | chr8.2:35999581-35999600 | MS.gene009015:CDS | 30.0% |
!!! | GCAAATTTCCAAGTGTTTTT+TGG | - | chr8.2:35998998-35999017 | MS.gene009015:intron | 30.0% |
!!! | TTTTGTTTTGGTTGATGCTA+AGG | - | chr8.2:35998748-35998767 | MS.gene009015:intron | 30.0% |
AAGAATAGTTTCATGAGTGG+TGG | - | chr8.2:35999135-35999154 | MS.gene009015:CDS | 35.0% | |
AATTACACAGATATGGAGGT+GGG | - | chr8.2:35999686-35999705 | MS.gene009015:CDS | 35.0% | |
ACTGCAGAATTACACAGATA+TGG | - | chr8.2:35999679-35999698 | MS.gene009015:CDS | 35.0% | |
AGAATAGTTTCATGAGTGGT+GGG | - | chr8.2:35999136-35999155 | MS.gene009015:CDS | 35.0% | |
CAATTCGAAGGCTTCAAATT+AGG | + | chr8.2:35998335-35998354 | None:intergenic | 35.0% | |
CATTGTGCAAAACATAAGGA+AGG | + | chr8.2:35998924-35998943 | None:intergenic | 35.0% | |
GGTTCAGATGTTTATCATCT+TGG | - | chr8.2:35999820-35999839 | MS.gene009015:CDS | 35.0% | |
TATGTGCATGTTTGGATTGA+CGG | - | chr8.2:35999404-35999423 | MS.gene009015:CDS | 35.0% | |
TGATAAACATCTGAACCAGT+AGG | + | chr8.2:35999817-35999836 | None:intergenic | 35.0% | |
TGTACTTAATCGCATATTCG+TGG | + | chr8.2:35999260-35999279 | None:intergenic | 35.0% | |
TGTTGTCAAATAGCGTCTAT+AGG | - | chr8.2:35999283-35999302 | MS.gene009015:CDS | 35.0% | |
! | CAAAACTCATGCTGATAATG+TGG | - | chr8.2:35999777-35999796 | MS.gene009015:CDS | 35.0% |
! | CACATTATCAGCATGAGTTT+TGG | + | chr8.2:35999779-35999798 | None:intergenic | 35.0% |
! | CTAATTTGAAGCCTTCGAAT+TGG | - | chr8.2:35998333-35998352 | MS.gene009015:intron | 35.0% |
! | CTGTAATTTTGCTCATAGTG+TGG | - | chr8.2:35997917-35997936 | MS.gene009015:intron | 35.0% |
! | TAATTTTGCTCATAGTGTGG+AGG | - | chr8.2:35997920-35997939 | MS.gene009015:intron | 35.0% |
! | TTGGGGAGAGTATGAATAAT+AGG | - | chr8.2:35998063-35998082 | MS.gene009015:intron | 35.0% |
!! | ATCCTAGTTTTCCAATTCGA+AGG | + | chr8.2:35998347-35998366 | None:intergenic | 35.0% |
!! | CCCTAGTGTCAATTTTGTTT+TGG | - | chr8.2:35998736-35998755 | MS.gene009015:intron | 35.0% |
!!! | AACAAATGCCATTTTGCTCA+TGG | - | chr8.2:35998407-35998426 | MS.gene009015:intron | 35.0% |
!!! | TTATCAGCATGAGTTTTGGA+AGG | + | chr8.2:35999775-35999794 | None:intergenic | 35.0% |
AAGGTCCCGATAAAATCAGT+AGG | - | chr8.2:35999908-35999927 | MS.gene009015:CDS | 40.0% | |
ACAATGGAAGGTCTTTGTGA+AGG | + | chr8.2:35999850-35999869 | None:intergenic | 40.0% | |
ACTATGCTGTAAGTTTCGTG+TGG | - | chr8.2:35997872-35997891 | MS.gene009015:intron | 40.0% | |
AGACTGGCATGACATAATCA+TGG | + | chr8.2:35999510-35999529 | None:intergenic | 40.0% | |
AGCCTTCGAATTGGAAAACT+AGG | - | chr8.2:35998342-35998361 | MS.gene009015:intron | 40.0% | |
ATCGAAGAATCGTGAAAGTG+TGG | - | chr8.2:35998172-35998191 | MS.gene009015:intron | 40.0% | |
CAATGGAAGGTCTTTGTGAA+GGG | + | chr8.2:35999849-35999868 | None:intergenic | 40.0% | |
CTATGCTGTAAGTTTCGTGT+GGG | - | chr8.2:35997873-35997892 | MS.gene009015:intron | 40.0% | |
GAATTACACAGATATGGAGG+TGG | - | chr8.2:35999685-35999704 | MS.gene009015:CDS | 40.0% | |
GCAGAATTACACAGATATGG+AGG | - | chr8.2:35999682-35999701 | MS.gene009015:CDS | 40.0% | |
GTAATAAGTGGGAGATGACT+GGG | - | chr8.2:35998369-35998388 | MS.gene009015:intron | 40.0% | |
TAAACATCTGAACCAGTAGG+AGG | + | chr8.2:35999814-35999833 | None:intergenic | 40.0% | |
TATGCTGTAAGTTTCGTGTG+GGG | - | chr8.2:35997874-35997893 | MS.gene009015:intron | 40.0% | |
TATGTGCATGTTTGGATCGA+CGG | + | chr8.2:35999535-35999554 | None:intergenic | 40.0% | |
TCAGTAGGATATATGGCGAT+TGG | - | chr8.2:35999923-35999942 | MS.gene009015:CDS | 40.0% | |
TCGAGAAGTAATTCGCAAGA+CGG | - | chr8.2:35997774-35997793 | MS.gene009015:CDS | 40.0% | |
TGTAATAAGTGGGAGATGAC+TGG | - | chr8.2:35998368-35998387 | MS.gene009015:intron | 40.0% | |
! | CTCTTTTTGTGATCCGCAAT+CGG | - | chr8.2:35999342-35999361 | MS.gene009015:CDS | 40.0% |
! | GATGAGTATCGTTACTGGAA+CGG | - | chr8.2:35997681-35997700 | MS.gene009015:CDS | 40.0% |
! | GGCAGTGTTTTCTTACCATT+TGG | - | chr8.2:35998589-35998608 | MS.gene009015:intron | 40.0% |
! | TAGTTTGTGTTGTGGAGTTG+TGG | - | chr8.2:35998568-35998587 | MS.gene009015:intron | 40.0% |
! | TGAAAGTATGTTGCCGATTG+CGG | + | chr8.2:35999358-35999377 | None:intergenic | 40.0% |
! | TTGGGTCGAGTACTTTTGTT+GGG | - | chr8.2:35998045-35998064 | MS.gene009015:intron | 40.0% |
!! | GAAAGTGTGGCGATTAGTTT+AGG | - | chr8.2:35998185-35998204 | MS.gene009015:intron | 40.0% |
ACAATCTCCTGCCAATTCTC+CGG | + | chr8.2:35997960-35997979 | None:intergenic | 45.0% | |
ACTGAGGAAGGTTGTCCTTA+TGG | - | chr8.2:35998119-35998138 | MS.gene009015:intron | 45.0% | |
AGAAGTAATTCGCAAGACGG+TGG | - | chr8.2:35997777-35997796 | MS.gene009015:CDS | 45.0% | |
AGAGCTCATCAGAAGTGGAA+AGG | - | chr8.2:35999889-35999908 | MS.gene009015:CDS | 45.0% | |
AGTTTAGGTCCTGGTGGTTA+TGG | - | chr8.2:35998200-35998219 | MS.gene009015:intron | 45.0% | |
AGTTTCAGATACCGACGGTT+GGG | - | chr8.2:35998027-35998046 | MS.gene009015:intron | 45.0% | |
ATGGAAGGAGAAAGCAGAGA+CGG | - | chr8.2:35999712-35999731 | MS.gene009015:CDS | 45.0% | |
ATTGACACTAGGGACAATGC+AGG | + | chr8.2:35998729-35998748 | None:intergenic | 45.0% | |
CTGTAGCACCATGAGCAAAA+TGG | + | chr8.2:35998418-35998437 | None:intergenic | 45.0% | |
CTTCTCGATTTCTTACTCGG+CGG | + | chr8.2:35997762-35997781 | None:intergenic | 45.0% | |
GTCGTTCAAATCATCACCAC+CGG | - | chr8.2:35997606-35997625 | MS.gene009015:CDS | 45.0% | |
GTTGCATCAAATCCTCCTAC+TGG | - | chr8.2:35999799-35999818 | MS.gene009015:CDS | 45.0% | |
GTTGCGTCTGACACAAAACA+GGG | - | chr8.2:35999745-35999764 | MS.gene009015:CDS | 45.0% | |
TAGGATAGCACAGTACGTAG+TGG | - | chr8.2:35999302-35999321 | MS.gene009015:CDS | 45.0% | |
TGTTGCGTCTGACACAAAAC+AGG | - | chr8.2:35999744-35999763 | MS.gene009015:CDS | 45.0% | |
TTGACACTAGGGACAATGCA+GGG | + | chr8.2:35998728-35998747 | None:intergenic | 45.0% | |
! | ATGACTGGGTATTGTCCCTT+TGG | - | chr8.2:35998383-35998402 | MS.gene009015:intron | 45.0% |
! | CGGAAGATGAGTATCGTTAC+TGG | - | chr8.2:35997676-35997695 | MS.gene009015:CDS | 45.0% |
! | GGTGGGTTCAGAATGAAAGA+TGG | - | chr8.2:35999153-35999172 | MS.gene009015:CDS | 45.0% |
! | GTTGGGTCGAGTACTTTTGT+TGG | - | chr8.2:35998044-35998063 | MS.gene009015:intron | 45.0% |
! | TGGGTCGAGTACTTTTGTTG+GGG | - | chr8.2:35998046-35998065 | MS.gene009015:intron | 45.0% |
!!! | CATTTTGCTCATGGTGCTAC+AGG | - | chr8.2:35998416-35998435 | MS.gene009015:intron | 45.0% |
AGTAATTCGCAAGACGGTGG+TGG | - | chr8.2:35997780-35997799 | MS.gene009015:CDS | 50.0% | |
ATTAGGTCCATTCCCAACCG+CGG | + | chr8.2:35998318-35998337 | None:intergenic | 50.0% | |
CCTGCACGCGAATTTGAAGA+CGG | + | chr8.2:35997732-35997751 | None:intergenic | 50.0% | |
CGAATCGCGCAAAAGCGATT+GGG | - | chr8.2:35997829-35997848 | MS.gene009015:CDS | 50.0% | |
GACAGAGAGCTCATCAGAAG+TGG | - | chr8.2:35999884-35999903 | MS.gene009015:CDS | 50.0% | |
GACCTTCCATTGTGAGTCAG+AGG | - | chr8.2:35999857-35999876 | MS.gene009015:CDS | 50.0% | |
GAGTGTGATTGAGCAGCCTA+GGG | - | chr8.2:35998001-35998020 | MS.gene009015:intron | 50.0% | |
GAGTTTCAGATACCGACGGT+TGG | - | chr8.2:35998026-35998045 | MS.gene009015:intron | 50.0% | |
GGAGAATTGGCAGGAGATTG+TGG | - | chr8.2:35997959-35997978 | MS.gene009015:intron | 50.0% | |
GGAGGAGTTTCAGATACCGA+CGG | - | chr8.2:35998022-35998041 | MS.gene009015:intron | 50.0% | |
GTTCAAATCATCACCACCGG+CGG | - | chr8.2:35997609-35997628 | MS.gene009015:CDS | 50.0% | |
TACTGGAACGGAAACGATGC+TGG | - | chr8.2:35997693-35997712 | MS.gene009015:CDS | 50.0% | |
TCGAATCGCGCAAAAGCGAT+TGG | - | chr8.2:35997828-35997847 | MS.gene009015:CDS | 50.0% | |
TGGCTGCTCATGAAGAAGAG+AGG | - | chr8.2:35997979-35997998 | MS.gene009015:intron | 50.0% | |
TTAGGTCCTGGTGGTTATGG+TGG | - | chr8.2:35998203-35998222 | MS.gene009015:intron | 50.0% | |
TTCTGATGAGCTCTCTGTCC+TGG | + | chr8.2:35999883-35999902 | None:intergenic | 50.0% | |
TTGGTCGGTTGACCAGCTAT+CGG | + | chr8.2:35997643-35997662 | None:intergenic | 50.0% | |
! | AAAGTACTCGACCCAACCGT+CGG | + | chr8.2:35998041-35998060 | None:intergenic | 50.0% |
! | CAGATATGGAGGTGGGCTTA+TGG | - | chr8.2:35999693-35999712 | MS.gene009015:CDS | 50.0% |
! | GGTATCTGAAACTCCTCCCT+AGG | + | chr8.2:35998020-35998039 | None:intergenic | 50.0% |
! | TATGGAGGTGGGCTTATGGA+AGG | - | chr8.2:35999697-35999716 | MS.gene009015:CDS | 50.0% |
! | TGTTGTTGTTGCAGCTGGTG+CGG | - | chr8.2:35998292-35998311 | MS.gene009015:intron | 50.0% |
!! | AGTGTTGGTGGTAGTGGTAG+TGG | - | chr8.2:35998266-35998285 | MS.gene009015:intron | 50.0% |
!! | GCGATTAGTTTAGGTCCTGG+TGG | - | chr8.2:35998194-35998213 | MS.gene009015:intron | 50.0% |
!! | GGTGTTGTTGTTGTTGCAGC+TGG | - | chr8.2:35998287-35998306 | MS.gene009015:intron | 50.0% |
!! | GTGGCGATTAGTTTAGGTCC+TGG | - | chr8.2:35998191-35998210 | MS.gene009015:intron | 50.0% |
!! | GTTGGTAGTGTTGGTGGTAG+TGG | - | chr8.2:35998260-35998279 | MS.gene009015:intron | 50.0% |
AGTGCTACAGCGCTATCGTG+TGG | - | chr8.2:35999208-35999227 | MS.gene009015:CDS | 55.0% | |
ATAGTGTGGAGGAGCTGCGT+CGG | - | chr8.2:35997931-35997950 | MS.gene009015:intron | 55.0% | |
ATCTCCTGCCAATTCTCCGG+CGG | + | chr8.2:35997957-35997976 | None:intergenic | 55.0% | |
CCGTCTTCAAATTCGCGTGC+AGG | - | chr8.2:35997729-35997748 | MS.gene009015:CDS | 55.0% | |
CGAGTTTAGCGAAATCGCGG+TGG | - | chr8.2:35999427-35999446 | MS.gene009015:CDS | 55.0% | |
CGGCGAGTTTAGCGAAATCG+CGG | - | chr8.2:35999424-35999443 | MS.gene009015:CDS | 55.0% | |
GGAGTGTGATTGAGCAGCCT+AGG | - | chr8.2:35998000-35998019 | MS.gene009015:intron | 55.0% | |
GGCCTCTGACTCACAATGGA+AGG | + | chr8.2:35999862-35999881 | None:intergenic | 55.0% | |
GTCAACCGACCAAGCTGACT+GGG | - | chr8.2:35997650-35997669 | MS.gene009015:CDS | 55.0% | |
GTTTGGATCGACGGTGAGAC+TGG | + | chr8.2:35999526-35999545 | None:intergenic | 55.0% | |
TCCATTGTGAGTCAGAGGCC+AGG | - | chr8.2:35999862-35999881 | MS.gene009015:CDS | 55.0% | |
TCCTGGCCTCTGACTCACAA+TGG | + | chr8.2:35999866-35999885 | None:intergenic | 55.0% | |
TGGAACGGAAACGATGCTGG+AGG | - | chr8.2:35997696-35997715 | MS.gene009015:CDS | 55.0% | |
TGTGATTGAGCAGCCTAGGG+AGG | - | chr8.2:35998004-35998023 | MS.gene009015:intron | 55.0% | |
! | AATTCGCAAGACGGTGGTGG+TGG | - | chr8.2:35997783-35997802 | MS.gene009015:CDS | 55.0% |
!! | GGGAGTGTTGGTAGTGTTGG+TGG | - | chr8.2:35998254-35998273 | MS.gene009015:intron | 55.0% |
!! | GGTGGGAGTGTTGGTAGTGT+TGG | - | chr8.2:35998251-35998270 | MS.gene009015:intron | 55.0% |
CAAATCATCACCACCGGCGG+CGG | - | chr8.2:35997612-35997631 | MS.gene009015:CDS | 60.0% | |
CCACCACCACCATAACCACC+AGG | + | chr8.2:35998212-35998231 | None:intergenic | 60.0% | |
GGTCAACCGACCAAGCTGAC+TGG | - | chr8.2:35997649-35997668 | MS.gene009015:CDS | 60.0% | |
GGTCCTGGTGGTTATGGTGG+TGG | - | chr8.2:35998206-35998225 | MS.gene009015:intron | 60.0% | |
GTCGGTTGACCAGCTATCGG+CGG | + | chr8.2:35997640-35997659 | None:intergenic | 60.0% | |
!! | CCTGGTGGTTATGGTGGTGG+TGG | - | chr8.2:35998209-35998228 | MS.gene009015:intron | 60.0% |
!! | GGTGGTTATGGTGGTGGTGG+AGG | - | chr8.2:35998212-35998231 | MS.gene009015:intron | 60.0% |
!! | GGTTATGGTGGTGGTGGAGG+TGG | - | chr8.2:35998215-35998234 | MS.gene009015:intron | 60.0% |
!! | TATGGTGGTGGTGGAGGTGG+TGG | - | chr8.2:35998218-35998237 | MS.gene009015:intron | 60.0% |
CGACCAAGCTGACTGGGCGA+CGG | - | chr8.2:35997656-35997675 | MS.gene009015:CDS | 65.0% | |
CGTCGCCCAGTCAGCTTGGT+CGG | + | chr8.2:35997658-35997677 | None:intergenic | 65.0% | |
CTTCCGTCGCCCAGTCAGCT+TGG | + | chr8.2:35997662-35997681 | None:intergenic | 65.0% | |
! | GGAGGAGGAGGTGGGAGTGT+TGG | - | chr8.2:35998242-35998261 | MS.gene009015:intron | 65.0% |
! | GTGGTGGAGGAGGAGGAGGT+GGG | - | chr8.2:35998234-35998253 | MS.gene009015:intron | 65.0% |
!! | CAAGACGGTGGTGGTGGCAG+TGG | - | chr8.2:35997789-35997808 | MS.gene009015:CDS | 65.0% |
TCGGCCGCCGGAGAATTGGC+AGG | - | chr8.2:35997950-35997969 | MS.gene009015:intron | 70.0% | |
TGTTGCAGCTGGTGCGGCCG+CGG | - | chr8.2:35998298-35998317 | MS.gene009015:intron | 70.0% | |
! | TGCGTCGGCCGCCGGAGAAT+TGG | - | chr8.2:35997946-35997965 | MS.gene009015:intron | 70.0% |
!! | GACGGTGGTGGTGGCAGTGG+TGG | - | chr8.2:35997792-35997811 | MS.gene009015:CDS | 70.0% |
!! | GGAGGTGGTGGAGGAGGAGG+AGG | - | chr8.2:35998230-35998249 | MS.gene009015:intron | 70.0% |
!! | GGCAGTGGTGGTGGTGGTGG+AGG | - | chr8.2:35997804-35997823 | MS.gene009015:CDS | 70.0% |
!! | GGTGGAGGTGGTGGAGGAGG+AGG | - | chr8.2:35998227-35998246 | MS.gene009015:intron | 70.0% |
!! | GGTGGCAGTGGTGGTGGTGG+TGG | - | chr8.2:35997801-35997820 | MS.gene009015:CDS | 70.0% |
!! | GGTGGTGGAGGAGGAGGAGG+TGG | - | chr8.2:35998233-35998252 | MS.gene009015:intron | 70.0% |
!! | GGTGGTGGAGGTGGTGGAGG+AGG | - | chr8.2:35998224-35998243 | MS.gene009015:intron | 70.0% |
!! | GGTGGTGGCAGTGGTGGTGG+TGG | - | chr8.2:35997798-35997817 | MS.gene009015:CDS | 70.0% |
!! | GGTGGTGGTGGAGGTGGTGG+AGG | - | chr8.2:35998221-35998240 | MS.gene009015:intron | 70.0% |
!! | GGTGGTGGTGGCAGTGGTGG+TGG | - | chr8.2:35997795-35997814 | MS.gene009015:CDS | 70.0% |
CAGCTGGTGCGGCCGCGGTT+GGG | - | chr8.2:35998303-35998322 | MS.gene009015:intron | 75.0% | |
GGTGCGGCCGCGGTTGGGAA+TGG | - | chr8.2:35998308-35998327 | MS.gene009015:intron | 75.0% | |
! | GCAGCTGGTGCGGCCGCGGT+TGG | - | chr8.2:35998302-35998321 | MS.gene009015:intron | 80.0% |
! | GCGGCGGAGCCGCCGATAGC+TGG | - | chr8.2:35997628-35997647 | MS.gene009015:CDS | 80.0% |
! | GCTATCGGCGGCTCCGCCGC+CGG | + | chr8.2:35997628-35997647 | None:intergenic | 80.0% |
!! | GGAGGAGCTGCGTCGGCCGC+CGG | - | chr8.2:35997938-35997957 | MS.gene009015:intron | 80.0% |
! | ATCGGCGGCTCCGCCGCCGG+TGG | + | chr8.2:35997625-35997644 | None:intergenic | 85.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 35997582 | 35999963 | 35997582 | ID=MS.gene009015 |
chr8.2 | mRNA | 35997582 | 35999963 | 35997582 | ID=MS.gene009015.t1;Parent=MS.gene009015 |
chr8.2 | exon | 35999108 | 35999963 | 35999108 | ID=MS.gene009015.t1.exon1;Parent=MS.gene009015.t1 |
chr8.2 | CDS | 35999108 | 35999963 | 35999108 | ID=cds.MS.gene009015.t1;Parent=MS.gene009015.t1 |
chr8.2 | exon | 35997582 | 35997859 | 35997582 | ID=MS.gene009015.t1.exon2;Parent=MS.gene009015.t1 |
chr8.2 | CDS | 35997582 | 35997859 | 35997582 | ID=cds.MS.gene009015.t1;Parent=MS.gene009015.t1 |
Gene Sequence |
Protein sequence |