AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene009015


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009015.t1 MTR_8g066730 98.148 378 4 2 1 377 1 376 0.0 749
MS.gene009015.t1 MTR_8g066730 96.564 291 7 2 1 290 1 289 0.0 563
MS.gene009015.t1 MTR_4g113860 30.612 294 141 9 83 375 76 307 5.52e-34 128
MS.gene009015.t1 MTR_4g113970 36.683 199 89 5 92 283 77 245 8.11e-34 126
MS.gene009015.t1 MTR_4g113940 28.866 291 126 6 92 375 54 270 4.67e-30 116
MS.gene009015.t1 MTR_3g050390 26.730 318 137 9 61 375 4 228 8.52e-26 104
MS.gene009015.t1 MTR_4g113890 36.975 119 46 2 83 201 56 145 1.21e-16 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009015.t1 AT1G32360 59.747 395 125 12 3 377 4 384 2.32e-131 382
MS.gene009015.t1 AT3G19360 36.755 302 154 10 87 376 98 374 7.29e-46 162
MS.gene009015.t1 AT3G19360 36.755 302 154 10 87 376 98 374 7.29e-46 162
MS.gene009015.t1 AT2G35430 41.739 230 63 9 170 377 72 252 2.34e-41 146
MS.gene009015.t1 AT2G35430 36.782 174 69 7 26 194 31 168 1.20e-19 87.8

Find 127 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGGTGGAGGAGGAGGAGG+TGG 0.204425 8.2:-35999290 MS.gene009015:CDS
GGTGGAGGTGGTGGAGGAGG+AGG 0.223597 8.2:-35999296 MS.gene009015:CDS
GGTGGCAGTGGTGGTGGTGG+TGG 0.225391 8.2:-35999722 MS.gene009015:CDS
GGAGGTGGTGGAGGAGGAGG+AGG 0.235103 8.2:-35999293 MS.gene009015:CDS
TATGAATAATAGGTCTTATA+AGG 0.235365 8.2:-35999450 MS.gene009015:CDS
AGTTTAGGTCCTGGTGGTTA+TGG 0.246502 8.2:-35999323 MS.gene009015:CDS
GGTGGTGGAGGTGGTGGAGG+AGG 0.265178 8.2:-35999299 MS.gene009015:CDS
ACTGAGGAAGGTTGTCCTTA+TGG 0.268283 8.2:-35999404 MS.gene009015:CDS
TATGGTGGTGGTGGAGGTGG+TGG 0.279719 8.2:-35999305 MS.gene009015:CDS
CACATTATCAGCATGAGTTT+TGG 0.299688 8.2:+35997747 None:intergenic
GGTGGTGGTGGAGGTGGTGG+AGG 0.301864 8.2:-35999302 MS.gene009015:CDS
GGTTATGGTGGTGGTGGAGG+TGG 0.308759 8.2:-35999308 MS.gene009015:CDS
CAATTCGAAGGCTTCAAATT+AGG 0.308899 8.2:+35999191 None:intergenic
AAATTACAGTTCGTTATATA+AGG 0.316371 8.2:+35999620 None:intergenic
CAGATATGGAGGTGGGCTTA+TGG 0.316746 8.2:-35997830 MS.gene009015:CDS
GGTTCAGATGTTTATCATCT+TGG 0.329111 8.2:-35997703 MS.gene009015:CDS
GATAAAATCAGTAGGATATA+TGG 0.337131 8.2:-35997607 MS.gene009015:CDS
GAAAGTGTGGCGATTAGTTT+AGG 0.346387 8.2:-35999338 MS.gene009015:CDS
TTGGGGAGAGTATGAATAAT+AGG 0.346414 8.2:-35999460 MS.gene009015:CDS
CTAATTTGAAGCCTTCGAAT+TGG 0.351114 8.2:-35999190 MS.gene009015:CDS
TGCGTCGGCCGCCGGAGAAT+TGG 0.373994 8.2:-35999577 MS.gene009015:CDS
TTCTGATGAGCTCTCTGTCC+TGG 0.376334 8.2:+35997643 None:intergenic
CAGCTGGTGCGGCCGCGGTT+GGG 0.377275 8.2:-35999220 MS.gene009015:CDS
GCAGCTGGTGCGGCCGCGGT+TGG 0.388240 8.2:-35999221 MS.gene009015:CDS
CTGTAGCACCATGAGCAAAA+TGG 0.399102 8.2:+35999108 None:intergenic
TGTAATAAGTGGGAGATGAC+TGG 0.409320 8.2:-35999155 MS.gene009015:CDS
GGTGGTGGCAGTGGTGGTGG+TGG 0.409758 8.2:-35999725 MS.gene009015:CDS
GGTGGTGGTGGCAGTGGTGG+TGG 0.410897 8.2:-35999728 MS.gene009015:CDS
GGTGGTTATGGTGGTGGTGG+AGG 0.415973 8.2:-35999311 MS.gene009015:CDS
GGTGCGGCCGCGGTTGGGAA+TGG 0.416021 8.2:-35999215 MS.gene009015:CDS
ATGACTGGGTATTGTCCCTT+TGG 0.419828 8.2:-35999140 MS.gene009015:CDS
ATGAATAATAGGTCTTATAA+GGG 0.419939 8.2:-35999449 MS.gene009015:CDS
GGAGGAGGAGGTGGGAGTGT+TGG 0.423488 8.2:-35999281 MS.gene009015:CDS
CGGAAGATGAGTATCGTTAC+TGG 0.423843 8.2:-35999847 MS.gene009015:CDS
TACTGGAACGGAAACGATGC+TGG 0.426962 8.2:-35999830 MS.gene009015:CDS
GGTGTTGTTGTTGTTGCAGC+TGG 0.426984 8.2:-35999236 MS.gene009015:CDS
ACTGCAGAATTACACAGATA+TGG 0.430785 8.2:-35997844 MS.gene009015:intron
GTTGGTAGTGTTGGTGGTAG+TGG 0.432301 8.2:-35999263 MS.gene009015:CDS
GCGGCGGAGCCGCCGATAGC+TGG 0.440541 8.2:-35999895 MS.gene009015:CDS
AAACTAGGATTTGTAATAAG+TGG 0.442008 8.2:-35999166 MS.gene009015:CDS
GGTGGGAGTGTTGGTAGTGT+TGG 0.443949 8.2:-35999272 MS.gene009015:CDS
GGTCAACCGACCAAGCTGAC+TGG 0.444227 8.2:-35999874 MS.gene009015:CDS
GACGGTGGTGGTGGCAGTGG+TGG 0.445426 8.2:-35999731 MS.gene009015:CDS
AGCCTTCGAATTGGAAAACT+AGG 0.448493 8.2:-35999181 MS.gene009015:CDS
GCTATCGGCGGCTCCGCCGC+CGG 0.448730 8.2:+35999898 None:intergenic
GGAGTGTGATTGAGCAGCCT+AGG 0.450759 8.2:-35999523 MS.gene009015:CDS
GGGAGTGTTGGTAGTGTTGG+TGG 0.465014 8.2:-35999269 MS.gene009015:CDS
GTGGTGGAGGAGGAGGAGGT+GGG 0.465072 8.2:-35999289 MS.gene009015:CDS
CCGTCTTCAAATTCGCGTGC+AGG 0.475752 8.2:-35999794 MS.gene009015:CDS
CAAGACGGTGGTGGTGGCAG+TGG 0.476611 8.2:-35999734 MS.gene009015:CDS
GGAGGAGCTGCGTCGGCCGC+CGG 0.477423 8.2:-35999585 MS.gene009015:CDS
TCGAATCGCGCAAAAGCGAT+TGG 0.480919 8.2:-35999695 MS.gene009015:CDS
CCTGGTGGTTATGGTGGTGG+TGG 0.482325 8.2:-35999314 MS.gene009015:CDS
TGTTGCGTCTGACACAAAAC+AGG 0.484755 8.2:-35997779 MS.gene009015:CDS
AGTTTCAGATACCGACGGTT+GGG 0.486443 8.2:-35999496 MS.gene009015:CDS
GGTCCTGGTGGTTATGGTGG+TGG 0.487385 8.2:-35999317 MS.gene009015:CDS
TTACTTCTCGATTTCTTACT+CGG 0.489176 8.2:+35999761 None:intergenic
CTTCCGTCGCCCAGTCAGCT+TGG 0.490823 8.2:+35999864 None:intergenic
TGTTGCAGCTGGTGCGGCCG+CGG 0.493113 8.2:-35999225 MS.gene009015:CDS
GTCAACCGACCAAGCTGACT+GGG 0.495786 8.2:-35999873 MS.gene009015:CDS
AACTAGGATTTGTAATAAGT+GGG 0.496877 8.2:-35999165 MS.gene009015:CDS
GTTGCATCAAATCCTCCTAC+TGG 0.500963 8.2:-35997724 MS.gene009015:CDS
CGAATCGCGCAAAAGCGATT+GGG 0.506056 8.2:-35999694 MS.gene009015:CDS
AGTGTTGGTGGTAGTGGTAG+TGG 0.513157 8.2:-35999257 MS.gene009015:CDS
ATCGGCGGCTCCGCCGCCGG+TGG 0.513840 8.2:+35999901 None:intergenic
CGTCGCCCAGTCAGCTTGGT+CGG 0.519038 8.2:+35999868 None:intergenic
AAAGTACAACTATCTCCATA+AGG 0.520248 8.2:+35999389 None:intergenic
CAAATCATCACCACCGGCGG+CGG 0.520822 8.2:-35999911 MS.gene009015:CDS
TCAGTAGGATATATGGCGAT+TGG 0.521816 8.2:-35997600 MS.gene009015:CDS
GTGGCGATTAGTTTAGGTCC+TGG 0.524638 8.2:-35999332 MS.gene009015:CDS
ACAATCTCCTGCCAATTCTC+CGG 0.526020 8.2:+35999566 None:intergenic
CAATGGAAGGTCTTTGTGAA+GGG 0.529629 8.2:+35997677 None:intergenic
GGAGAATTGGCAGGAGATTG+TGG 0.530968 8.2:-35999564 MS.gene009015:CDS
AATTCGCAAGACGGTGGTGG+TGG 0.537605 8.2:-35999740 MS.gene009015:CDS
TCGGCCGCCGGAGAATTGGC+AGG 0.541968 8.2:-35999573 MS.gene009015:CDS
AAAATGGCATTTGTTACCAA+AGG 0.546912 8.2:+35999124 None:intergenic
GACAGAGAGCTCATCAGAAG+TGG 0.547469 8.2:-35997639 MS.gene009015:CDS
GGTATCTGAAACTCCTCCCT+AGG 0.552310 8.2:+35999506 None:intergenic
GGCCTCTGACTCACAATGGA+AGG 0.553370 8.2:+35997664 None:intergenic
TTAGGTCCTGGTGGTTATGG+TGG 0.556983 8.2:-35999320 MS.gene009015:CDS
GAGTGTGATTGAGCAGCCTA+GGG 0.557000 8.2:-35999522 MS.gene009015:CDS
AAATGGCATTTGTTACCAAA+GGG 0.557541 8.2:+35999125 None:intergenic
GTAATAAGTGGGAGATGACT+GGG 0.557999 8.2:-35999154 MS.gene009015:CDS
AGTAATTCGCAAGACGGTGG+TGG 0.565878 8.2:-35999743 MS.gene009015:CDS
TCCATTGTGAGTCAGAGGCC+AGG 0.568730 8.2:-35997661 MS.gene009015:CDS
CTATGCTGTAAGTTTCGTGT+GGG 0.569773 8.2:-35999650 MS.gene009015:CDS
GACCTTCCATTGTGAGTCAG+AGG 0.580448 8.2:-35997666 MS.gene009015:CDS
TATGGAGGTGGGCTTATGGA+AGG 0.583879 8.2:-35997826 MS.gene009015:CDS
GAATTACACAGATATGGAGG+TGG 0.593880 8.2:-35997838 MS.gene009015:CDS
ACAATGGAAGGTCTTTGTGA+AGG 0.593936 8.2:+35997676 None:intergenic
TCCTGGCCTCTGACTCACAA+TGG 0.594508 8.2:+35997660 None:intergenic
TGTTGTTGTTGCAGCTGGTG+CGG 0.594830 8.2:-35999231 MS.gene009015:CDS
CGACCAAGCTGACTGGGCGA+CGG 0.595148 8.2:-35999867 MS.gene009015:CDS
TTGGTCGGTTGACCAGCTAT+CGG 0.595738 8.2:+35999883 None:intergenic
GATGAGTATCGTTACTGGAA+CGG 0.598603 8.2:-35999842 MS.gene009015:CDS
CAAAACTCATGCTGATAATG+TGG 0.598802 8.2:-35997746 MS.gene009015:CDS
GTCGTTCAAATCATCACCAC+CGG 0.600321 8.2:-35999917 MS.gene009015:CDS
CCACCACCACCATAACCACC+AGG 0.606081 8.2:+35999314 None:intergenic
AGAGCTCATCAGAAGTGGAA+AGG 0.606297 8.2:-35997634 MS.gene009015:CDS
GAGTTTCAGATACCGACGGT+TGG 0.612303 8.2:-35999497 MS.gene009015:CDS
AAAGTACTCGACCCAACCGT+CGG 0.614579 8.2:+35999485 None:intergenic
ACTATGCTGTAAGTTTCGTG+TGG 0.615988 8.2:-35999651 MS.gene009015:CDS
ATCGAAGAATCGTGAAAGTG+TGG 0.618402 8.2:-35999351 MS.gene009015:CDS
AAGGTCCCGATAAAATCAGT+AGG 0.622761 8.2:-35997615 MS.gene009015:CDS
GGAGGAGTTTCAGATACCGA+CGG 0.623970 8.2:-35999501 MS.gene009015:CDS
TGTGATTGAGCAGCCTAGGG+AGG 0.629299 8.2:-35999519 MS.gene009015:CDS
ATAGTGTGGAGGAGCTGCGT+CGG 0.631733 8.2:-35999592 MS.gene009015:CDS
TAAACATCTGAACCAGTAGG+AGG 0.634383 8.2:+35997712 None:intergenic
AATTACACAGATATGGAGGT+GGG 0.635355 8.2:-35997837 MS.gene009015:CDS
TGATAAACATCTGAACCAGT+AGG 0.638955 8.2:+35997709 None:intergenic
TCGAGAAGTAATTCGCAAGA+CGG 0.639038 8.2:-35999749 MS.gene009015:CDS
AGAAGTAATTCGCAAGACGG+TGG 0.641319 8.2:-35999746 MS.gene009015:CDS
TGAATAATAGGTCTTATAAG+GGG 0.644881 8.2:-35999448 MS.gene009015:CDS
CCTGCACGCGAATTTGAAGA+CGG 0.647659 8.2:+35999794 None:intergenic
TGGCTGCTCATGAAGAAGAG+AGG 0.650335 8.2:-35999544 MS.gene009015:CDS
ACAATGGATTACAACAGAGA+CGG 0.651622 8.2:-35999944 MS.gene009015:CDS
ATGGAAGGAGAAAGCAGAGA+CGG 0.651866 8.2:-35997811 MS.gene009015:CDS
ATCTCCTGCCAATTCTCCGG+CGG 0.654680 8.2:+35999569 None:intergenic
GCGATTAGTTTAGGTCCTGG+TGG 0.657986 8.2:-35999329 MS.gene009015:CDS
GTTCAAATCATCACCACCGG+CGG 0.671677 8.2:-35999914 MS.gene009015:CDS
GTCGGTTGACCAGCTATCGG+CGG 0.673668 8.2:+35999886 None:intergenic
GCAGAATTACACAGATATGG+AGG 0.676863 8.2:-35997841 MS.gene009015:intron
ATTAGGTCCATTCCCAACCG+CGG 0.701157 8.2:+35999208 None:intergenic
CTTCTCGATTTCTTACTCGG+CGG 0.707380 8.2:+35999764 None:intergenic
TATGCTGTAAGTTTCGTGTG+GGG 0.708514 8.2:-35999649 MS.gene009015:CDS
TGGAACGGAAACGATGCTGG+AGG 0.723504 8.2:-35999827 MS.gene009015:CDS
GTTGCGTCTGACACAAAACA+GGG 0.785414 8.2:-35997778 MS.gene009015:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTAAAGATTTTAATTTTA+TGG - chr8.2:35998479-35998498 MS.gene009015:intron 10.0%
!!! TTTTAATTTTATGGTAATTG+AGG - chr8.2:35998488-35998507 MS.gene009015:intron 15.0%
!! AAATTACAGTTCGTTATATA+AGG + chr8.2:35997906-35997925 None:intergenic 20.0%
!! ACATAACAAAATCATCAAAA+TGG + chr8.2:35998453-35998472 None:intergenic 20.0%
!!! ATATATCCTACTGATTTTAT+CGG + chr8.2:35999917-35999936 None:intergenic 20.0%
!!! ATGAATAATAGGTCTTATAA+GGG - chr8.2:35998074-35998093 MS.gene009015:intron 20.0%
!!! GGTTTTTTCTTCATTTAATA+TGG - chr8.2:35998660-35998679 MS.gene009015:intron 20.0%
!!! TATGAATAATAGGTCTTATA+AGG - chr8.2:35998073-35998092 MS.gene009015:intron 20.0%
!!! TTGTAAGAAATTTTATACTG+AGG - chr8.2:35998103-35998122 MS.gene009015:intron 20.0%
! AAAATGTATATGTGCATGTT+TGG + chr8.2:35999543-35999562 None:intergenic 25.0%
! AAACTAGGATTTGTAATAAG+TGG - chr8.2:35998357-35998376 MS.gene009015:intron 25.0%
! AACTAGGATTTGTAATAAGT+GGG - chr8.2:35998358-35998377 MS.gene009015:intron 25.0%
! AAGAAAAAACCAATCTTGTA+TGG + chr8.2:35998651-35998670 None:intergenic 25.0%
! ATGAAAAGTAATCGCAAAAA+AGG + chr8.2:35999036-35999055 None:intergenic 25.0%
! GATAAAATCAGTAGGATATA+TGG - chr8.2:35999916-35999935 MS.gene009015:CDS 25.0%
!! AAGAAATTTTATACTGAGGA+AGG - chr8.2:35998107-35998126 MS.gene009015:intron 25.0%
!! ATTTGAATTTGAAGCATACA+AGG + chr8.2:35999062-35999081 None:intergenic 25.0%
!! GTTATAAATAGTTTGTGTTG+TGG - chr8.2:35998560-35998579 MS.gene009015:intron 25.0%
!! TACCATTTGGATACAATTTT+GGG - chr8.2:35998602-35998621 MS.gene009015:intron 25.0%
!! TCTTTTTATCCATACAAGAT+TGG - chr8.2:35998639-35998658 MS.gene009015:intron 25.0%
!! TGAATAATAGGTCTTATAAG+GGG - chr8.2:35998075-35998094 MS.gene009015:intron 25.0%
!! TTACCATTTGGATACAATTT+TGG - chr8.2:35998601-35998620 MS.gene009015:intron 25.0%
!! TTTTCATTGTGCAAAACATA+AGG + chr8.2:35998928-35998947 None:intergenic 25.0%
!! TTTTCTTAATCAGAAAGTGA+AGG + chr8.2:35999092-35999111 None:intergenic 25.0%
!! TTTTGATATGTATGTGAATG+TGG - chr8.2:35998783-35998802 MS.gene009015:intron 25.0%
!!! ATAGAAAGTGCTATTAGAAT+TGG - chr8.2:35998534-35998553 MS.gene009015:intron 25.0%
!!! GATGATTTTGTTATGTGAAT+TGG - chr8.2:35998457-35998476 MS.gene009015:intron 25.0%
!!! TATATCCTACTGATTTTATC+GGG + chr8.2:35999916-35999935 None:intergenic 25.0%
AAACATGCACATAATGAACA+AGG + chr8.2:35999397-35999416 None:intergenic 30.0%
AAAGTACAACTATCTCCATA+AGG + chr8.2:35998137-35998156 None:intergenic 30.0%
ACCAAAACAAAATTGACACT+AGG + chr8.2:35998740-35998759 None:intergenic 30.0%
ACTGTAAACCAAAAAACACT+TGG + chr8.2:35999009-35999028 None:intergenic 30.0%
ACTTTCATTGCTTTGATGTT+TGG - chr8.2:35999371-35999390 MS.gene009015:CDS 30.0%
ATTGCATAGATTACTCAAGT+CGG + chr8.2:35998844-35998863 None:intergenic 30.0%
CCAAAACAAAATTGACACTA+GGG + chr8.2:35998739-35998758 None:intergenic 30.0%
GAAAAGAATAGTTTCATGAG+TGG - chr8.2:35999132-35999151 MS.gene009015:CDS 30.0%
GGCTTAAATTGATTATCTGT+CGG - chr8.2:35999602-35999621 MS.gene009015:CDS 30.0%
TTACTTCTCGATTTCTTACT+CGG + chr8.2:35997765-35997784 None:intergenic 30.0%
TTCCCAAAATTGTATCCAAA+TGG + chr8.2:35998607-35998626 None:intergenic 30.0%
TTGTTCATTATGTGCATGTT+TGG - chr8.2:35999396-35999415 MS.gene009015:CDS 30.0%
! AAAATGGCATTTGTTACCAA+AGG + chr8.2:35998402-35998421 None:intergenic 30.0%
! AAATGGCATTTGTTACCAAA+GGG + chr8.2:35998401-35998420 None:intergenic 30.0%
! TTGATACACGAGTGTTTTAT+TGG - chr8.2:35999581-35999600 MS.gene009015:CDS 30.0%
!!! GCAAATTTCCAAGTGTTTTT+TGG - chr8.2:35998998-35999017 MS.gene009015:intron 30.0%
!!! TTTTGTTTTGGTTGATGCTA+AGG - chr8.2:35998748-35998767 MS.gene009015:intron 30.0%
AAGAATAGTTTCATGAGTGG+TGG - chr8.2:35999135-35999154 MS.gene009015:CDS 35.0%
AATTACACAGATATGGAGGT+GGG - chr8.2:35999686-35999705 MS.gene009015:CDS 35.0%
ACTGCAGAATTACACAGATA+TGG - chr8.2:35999679-35999698 MS.gene009015:CDS 35.0%
AGAATAGTTTCATGAGTGGT+GGG - chr8.2:35999136-35999155 MS.gene009015:CDS 35.0%
CAATTCGAAGGCTTCAAATT+AGG + chr8.2:35998335-35998354 None:intergenic 35.0%
CATTGTGCAAAACATAAGGA+AGG + chr8.2:35998924-35998943 None:intergenic 35.0%
GGTTCAGATGTTTATCATCT+TGG - chr8.2:35999820-35999839 MS.gene009015:CDS 35.0%
TATGTGCATGTTTGGATTGA+CGG - chr8.2:35999404-35999423 MS.gene009015:CDS 35.0%
TGATAAACATCTGAACCAGT+AGG + chr8.2:35999817-35999836 None:intergenic 35.0%
TGTACTTAATCGCATATTCG+TGG + chr8.2:35999260-35999279 None:intergenic 35.0%
TGTTGTCAAATAGCGTCTAT+AGG - chr8.2:35999283-35999302 MS.gene009015:CDS 35.0%
! CAAAACTCATGCTGATAATG+TGG - chr8.2:35999777-35999796 MS.gene009015:CDS 35.0%
! CACATTATCAGCATGAGTTT+TGG + chr8.2:35999779-35999798 None:intergenic 35.0%
! CTAATTTGAAGCCTTCGAAT+TGG - chr8.2:35998333-35998352 MS.gene009015:intron 35.0%
! CTGTAATTTTGCTCATAGTG+TGG - chr8.2:35997917-35997936 MS.gene009015:intron 35.0%
! TAATTTTGCTCATAGTGTGG+AGG - chr8.2:35997920-35997939 MS.gene009015:intron 35.0%
! TTGGGGAGAGTATGAATAAT+AGG - chr8.2:35998063-35998082 MS.gene009015:intron 35.0%
!! ATCCTAGTTTTCCAATTCGA+AGG + chr8.2:35998347-35998366 None:intergenic 35.0%
!! CCCTAGTGTCAATTTTGTTT+TGG - chr8.2:35998736-35998755 MS.gene009015:intron 35.0%
!!! AACAAATGCCATTTTGCTCA+TGG - chr8.2:35998407-35998426 MS.gene009015:intron 35.0%
!!! TTATCAGCATGAGTTTTGGA+AGG + chr8.2:35999775-35999794 None:intergenic 35.0%
AAGGTCCCGATAAAATCAGT+AGG - chr8.2:35999908-35999927 MS.gene009015:CDS 40.0%
ACAATGGAAGGTCTTTGTGA+AGG + chr8.2:35999850-35999869 None:intergenic 40.0%
ACTATGCTGTAAGTTTCGTG+TGG - chr8.2:35997872-35997891 MS.gene009015:intron 40.0%
AGACTGGCATGACATAATCA+TGG + chr8.2:35999510-35999529 None:intergenic 40.0%
AGCCTTCGAATTGGAAAACT+AGG - chr8.2:35998342-35998361 MS.gene009015:intron 40.0%
ATCGAAGAATCGTGAAAGTG+TGG - chr8.2:35998172-35998191 MS.gene009015:intron 40.0%
CAATGGAAGGTCTTTGTGAA+GGG + chr8.2:35999849-35999868 None:intergenic 40.0%
CTATGCTGTAAGTTTCGTGT+GGG - chr8.2:35997873-35997892 MS.gene009015:intron 40.0%
GAATTACACAGATATGGAGG+TGG - chr8.2:35999685-35999704 MS.gene009015:CDS 40.0%
GCAGAATTACACAGATATGG+AGG - chr8.2:35999682-35999701 MS.gene009015:CDS 40.0%
GTAATAAGTGGGAGATGACT+GGG - chr8.2:35998369-35998388 MS.gene009015:intron 40.0%
TAAACATCTGAACCAGTAGG+AGG + chr8.2:35999814-35999833 None:intergenic 40.0%
TATGCTGTAAGTTTCGTGTG+GGG - chr8.2:35997874-35997893 MS.gene009015:intron 40.0%
TATGTGCATGTTTGGATCGA+CGG + chr8.2:35999535-35999554 None:intergenic 40.0%
TCAGTAGGATATATGGCGAT+TGG - chr8.2:35999923-35999942 MS.gene009015:CDS 40.0%
TCGAGAAGTAATTCGCAAGA+CGG - chr8.2:35997774-35997793 MS.gene009015:CDS 40.0%
TGTAATAAGTGGGAGATGAC+TGG - chr8.2:35998368-35998387 MS.gene009015:intron 40.0%
! CTCTTTTTGTGATCCGCAAT+CGG - chr8.2:35999342-35999361 MS.gene009015:CDS 40.0%
! GATGAGTATCGTTACTGGAA+CGG - chr8.2:35997681-35997700 MS.gene009015:CDS 40.0%
! GGCAGTGTTTTCTTACCATT+TGG - chr8.2:35998589-35998608 MS.gene009015:intron 40.0%
! TAGTTTGTGTTGTGGAGTTG+TGG - chr8.2:35998568-35998587 MS.gene009015:intron 40.0%
! TGAAAGTATGTTGCCGATTG+CGG + chr8.2:35999358-35999377 None:intergenic 40.0%
! TTGGGTCGAGTACTTTTGTT+GGG - chr8.2:35998045-35998064 MS.gene009015:intron 40.0%
!! GAAAGTGTGGCGATTAGTTT+AGG - chr8.2:35998185-35998204 MS.gene009015:intron 40.0%
ACAATCTCCTGCCAATTCTC+CGG + chr8.2:35997960-35997979 None:intergenic 45.0%
ACTGAGGAAGGTTGTCCTTA+TGG - chr8.2:35998119-35998138 MS.gene009015:intron 45.0%
AGAAGTAATTCGCAAGACGG+TGG - chr8.2:35997777-35997796 MS.gene009015:CDS 45.0%
AGAGCTCATCAGAAGTGGAA+AGG - chr8.2:35999889-35999908 MS.gene009015:CDS 45.0%
AGTTTAGGTCCTGGTGGTTA+TGG - chr8.2:35998200-35998219 MS.gene009015:intron 45.0%
AGTTTCAGATACCGACGGTT+GGG - chr8.2:35998027-35998046 MS.gene009015:intron 45.0%
ATGGAAGGAGAAAGCAGAGA+CGG - chr8.2:35999712-35999731 MS.gene009015:CDS 45.0%
ATTGACACTAGGGACAATGC+AGG + chr8.2:35998729-35998748 None:intergenic 45.0%
CTGTAGCACCATGAGCAAAA+TGG + chr8.2:35998418-35998437 None:intergenic 45.0%
CTTCTCGATTTCTTACTCGG+CGG + chr8.2:35997762-35997781 None:intergenic 45.0%
GTCGTTCAAATCATCACCAC+CGG - chr8.2:35997606-35997625 MS.gene009015:CDS 45.0%
GTTGCATCAAATCCTCCTAC+TGG - chr8.2:35999799-35999818 MS.gene009015:CDS 45.0%
GTTGCGTCTGACACAAAACA+GGG - chr8.2:35999745-35999764 MS.gene009015:CDS 45.0%
TAGGATAGCACAGTACGTAG+TGG - chr8.2:35999302-35999321 MS.gene009015:CDS 45.0%
TGTTGCGTCTGACACAAAAC+AGG - chr8.2:35999744-35999763 MS.gene009015:CDS 45.0%
TTGACACTAGGGACAATGCA+GGG + chr8.2:35998728-35998747 None:intergenic 45.0%
! ATGACTGGGTATTGTCCCTT+TGG - chr8.2:35998383-35998402 MS.gene009015:intron 45.0%
! CGGAAGATGAGTATCGTTAC+TGG - chr8.2:35997676-35997695 MS.gene009015:CDS 45.0%
! GGTGGGTTCAGAATGAAAGA+TGG - chr8.2:35999153-35999172 MS.gene009015:CDS 45.0%
! GTTGGGTCGAGTACTTTTGT+TGG - chr8.2:35998044-35998063 MS.gene009015:intron 45.0%
! TGGGTCGAGTACTTTTGTTG+GGG - chr8.2:35998046-35998065 MS.gene009015:intron 45.0%
!!! CATTTTGCTCATGGTGCTAC+AGG - chr8.2:35998416-35998435 MS.gene009015:intron 45.0%
AGTAATTCGCAAGACGGTGG+TGG - chr8.2:35997780-35997799 MS.gene009015:CDS 50.0%
ATTAGGTCCATTCCCAACCG+CGG + chr8.2:35998318-35998337 None:intergenic 50.0%
CCTGCACGCGAATTTGAAGA+CGG + chr8.2:35997732-35997751 None:intergenic 50.0%
CGAATCGCGCAAAAGCGATT+GGG - chr8.2:35997829-35997848 MS.gene009015:CDS 50.0%
GACAGAGAGCTCATCAGAAG+TGG - chr8.2:35999884-35999903 MS.gene009015:CDS 50.0%
GACCTTCCATTGTGAGTCAG+AGG - chr8.2:35999857-35999876 MS.gene009015:CDS 50.0%
GAGTGTGATTGAGCAGCCTA+GGG - chr8.2:35998001-35998020 MS.gene009015:intron 50.0%
GAGTTTCAGATACCGACGGT+TGG - chr8.2:35998026-35998045 MS.gene009015:intron 50.0%
GGAGAATTGGCAGGAGATTG+TGG - chr8.2:35997959-35997978 MS.gene009015:intron 50.0%
GGAGGAGTTTCAGATACCGA+CGG - chr8.2:35998022-35998041 MS.gene009015:intron 50.0%
GTTCAAATCATCACCACCGG+CGG - chr8.2:35997609-35997628 MS.gene009015:CDS 50.0%
TACTGGAACGGAAACGATGC+TGG - chr8.2:35997693-35997712 MS.gene009015:CDS 50.0%
TCGAATCGCGCAAAAGCGAT+TGG - chr8.2:35997828-35997847 MS.gene009015:CDS 50.0%
TGGCTGCTCATGAAGAAGAG+AGG - chr8.2:35997979-35997998 MS.gene009015:intron 50.0%
TTAGGTCCTGGTGGTTATGG+TGG - chr8.2:35998203-35998222 MS.gene009015:intron 50.0%
TTCTGATGAGCTCTCTGTCC+TGG + chr8.2:35999883-35999902 None:intergenic 50.0%
TTGGTCGGTTGACCAGCTAT+CGG + chr8.2:35997643-35997662 None:intergenic 50.0%
! AAAGTACTCGACCCAACCGT+CGG + chr8.2:35998041-35998060 None:intergenic 50.0%
! CAGATATGGAGGTGGGCTTA+TGG - chr8.2:35999693-35999712 MS.gene009015:CDS 50.0%
! GGTATCTGAAACTCCTCCCT+AGG + chr8.2:35998020-35998039 None:intergenic 50.0%
! TATGGAGGTGGGCTTATGGA+AGG - chr8.2:35999697-35999716 MS.gene009015:CDS 50.0%
! TGTTGTTGTTGCAGCTGGTG+CGG - chr8.2:35998292-35998311 MS.gene009015:intron 50.0%
!! AGTGTTGGTGGTAGTGGTAG+TGG - chr8.2:35998266-35998285 MS.gene009015:intron 50.0%
!! GCGATTAGTTTAGGTCCTGG+TGG - chr8.2:35998194-35998213 MS.gene009015:intron 50.0%
!! GGTGTTGTTGTTGTTGCAGC+TGG - chr8.2:35998287-35998306 MS.gene009015:intron 50.0%
!! GTGGCGATTAGTTTAGGTCC+TGG - chr8.2:35998191-35998210 MS.gene009015:intron 50.0%
!! GTTGGTAGTGTTGGTGGTAG+TGG - chr8.2:35998260-35998279 MS.gene009015:intron 50.0%
AGTGCTACAGCGCTATCGTG+TGG - chr8.2:35999208-35999227 MS.gene009015:CDS 55.0%
ATAGTGTGGAGGAGCTGCGT+CGG - chr8.2:35997931-35997950 MS.gene009015:intron 55.0%
ATCTCCTGCCAATTCTCCGG+CGG + chr8.2:35997957-35997976 None:intergenic 55.0%
CCGTCTTCAAATTCGCGTGC+AGG - chr8.2:35997729-35997748 MS.gene009015:CDS 55.0%
CGAGTTTAGCGAAATCGCGG+TGG - chr8.2:35999427-35999446 MS.gene009015:CDS 55.0%
CGGCGAGTTTAGCGAAATCG+CGG - chr8.2:35999424-35999443 MS.gene009015:CDS 55.0%
GGAGTGTGATTGAGCAGCCT+AGG - chr8.2:35998000-35998019 MS.gene009015:intron 55.0%
GGCCTCTGACTCACAATGGA+AGG + chr8.2:35999862-35999881 None:intergenic 55.0%
GTCAACCGACCAAGCTGACT+GGG - chr8.2:35997650-35997669 MS.gene009015:CDS 55.0%
GTTTGGATCGACGGTGAGAC+TGG + chr8.2:35999526-35999545 None:intergenic 55.0%
TCCATTGTGAGTCAGAGGCC+AGG - chr8.2:35999862-35999881 MS.gene009015:CDS 55.0%
TCCTGGCCTCTGACTCACAA+TGG + chr8.2:35999866-35999885 None:intergenic 55.0%
TGGAACGGAAACGATGCTGG+AGG - chr8.2:35997696-35997715 MS.gene009015:CDS 55.0%
TGTGATTGAGCAGCCTAGGG+AGG - chr8.2:35998004-35998023 MS.gene009015:intron 55.0%
! AATTCGCAAGACGGTGGTGG+TGG - chr8.2:35997783-35997802 MS.gene009015:CDS 55.0%
!! GGGAGTGTTGGTAGTGTTGG+TGG - chr8.2:35998254-35998273 MS.gene009015:intron 55.0%
!! GGTGGGAGTGTTGGTAGTGT+TGG - chr8.2:35998251-35998270 MS.gene009015:intron 55.0%
CAAATCATCACCACCGGCGG+CGG - chr8.2:35997612-35997631 MS.gene009015:CDS 60.0%
CCACCACCACCATAACCACC+AGG + chr8.2:35998212-35998231 None:intergenic 60.0%
GGTCAACCGACCAAGCTGAC+TGG - chr8.2:35997649-35997668 MS.gene009015:CDS 60.0%
GGTCCTGGTGGTTATGGTGG+TGG - chr8.2:35998206-35998225 MS.gene009015:intron 60.0%
GTCGGTTGACCAGCTATCGG+CGG + chr8.2:35997640-35997659 None:intergenic 60.0%
!! CCTGGTGGTTATGGTGGTGG+TGG - chr8.2:35998209-35998228 MS.gene009015:intron 60.0%
!! GGTGGTTATGGTGGTGGTGG+AGG - chr8.2:35998212-35998231 MS.gene009015:intron 60.0%
!! GGTTATGGTGGTGGTGGAGG+TGG - chr8.2:35998215-35998234 MS.gene009015:intron 60.0%
!! TATGGTGGTGGTGGAGGTGG+TGG - chr8.2:35998218-35998237 MS.gene009015:intron 60.0%
CGACCAAGCTGACTGGGCGA+CGG - chr8.2:35997656-35997675 MS.gene009015:CDS 65.0%
CGTCGCCCAGTCAGCTTGGT+CGG + chr8.2:35997658-35997677 None:intergenic 65.0%
CTTCCGTCGCCCAGTCAGCT+TGG + chr8.2:35997662-35997681 None:intergenic 65.0%
! GGAGGAGGAGGTGGGAGTGT+TGG - chr8.2:35998242-35998261 MS.gene009015:intron 65.0%
! GTGGTGGAGGAGGAGGAGGT+GGG - chr8.2:35998234-35998253 MS.gene009015:intron 65.0%
!! CAAGACGGTGGTGGTGGCAG+TGG - chr8.2:35997789-35997808 MS.gene009015:CDS 65.0%
TCGGCCGCCGGAGAATTGGC+AGG - chr8.2:35997950-35997969 MS.gene009015:intron 70.0%
TGTTGCAGCTGGTGCGGCCG+CGG - chr8.2:35998298-35998317 MS.gene009015:intron 70.0%
! TGCGTCGGCCGCCGGAGAAT+TGG - chr8.2:35997946-35997965 MS.gene009015:intron 70.0%
!! GACGGTGGTGGTGGCAGTGG+TGG - chr8.2:35997792-35997811 MS.gene009015:CDS 70.0%
!! GGAGGTGGTGGAGGAGGAGG+AGG - chr8.2:35998230-35998249 MS.gene009015:intron 70.0%
!! GGCAGTGGTGGTGGTGGTGG+AGG - chr8.2:35997804-35997823 MS.gene009015:CDS 70.0%
!! GGTGGAGGTGGTGGAGGAGG+AGG - chr8.2:35998227-35998246 MS.gene009015:intron 70.0%
!! GGTGGCAGTGGTGGTGGTGG+TGG - chr8.2:35997801-35997820 MS.gene009015:CDS 70.0%
!! GGTGGTGGAGGAGGAGGAGG+TGG - chr8.2:35998233-35998252 MS.gene009015:intron 70.0%
!! GGTGGTGGAGGTGGTGGAGG+AGG - chr8.2:35998224-35998243 MS.gene009015:intron 70.0%
!! GGTGGTGGCAGTGGTGGTGG+TGG - chr8.2:35997798-35997817 MS.gene009015:CDS 70.0%
!! GGTGGTGGTGGAGGTGGTGG+AGG - chr8.2:35998221-35998240 MS.gene009015:intron 70.0%
!! GGTGGTGGTGGCAGTGGTGG+TGG - chr8.2:35997795-35997814 MS.gene009015:CDS 70.0%
CAGCTGGTGCGGCCGCGGTT+GGG - chr8.2:35998303-35998322 MS.gene009015:intron 75.0%
GGTGCGGCCGCGGTTGGGAA+TGG - chr8.2:35998308-35998327 MS.gene009015:intron 75.0%
! GCAGCTGGTGCGGCCGCGGT+TGG - chr8.2:35998302-35998321 MS.gene009015:intron 80.0%
! GCGGCGGAGCCGCCGATAGC+TGG - chr8.2:35997628-35997647 MS.gene009015:CDS 80.0%
! GCTATCGGCGGCTCCGCCGC+CGG + chr8.2:35997628-35997647 None:intergenic 80.0%
!! GGAGGAGCTGCGTCGGCCGC+CGG - chr8.2:35997938-35997957 MS.gene009015:intron 80.0%
! ATCGGCGGCTCCGCCGCCGG+TGG + chr8.2:35997625-35997644 None:intergenic 85.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 35997582 35999963 35997582 ID=MS.gene009015
chr8.2 mRNA 35997582 35999963 35997582 ID=MS.gene009015.t1;Parent=MS.gene009015
chr8.2 exon 35999108 35999963 35999108 ID=MS.gene009015.t1.exon1;Parent=MS.gene009015.t1
chr8.2 CDS 35999108 35999963 35999108 ID=cds.MS.gene009015.t1;Parent=MS.gene009015.t1
chr8.2 exon 35997582 35997859 35997582 ID=MS.gene009015.t1.exon2;Parent=MS.gene009015.t1
chr8.2 CDS 35997582 35997859 35997582 ID=cds.MS.gene009015.t1;Parent=MS.gene009015.t1
Gene Sequence

>MS.gene009015

ATGGATTACAACAGAGACGGCAACGTCGTTCAAATCATCACCACCGGCGGCGGAGCCGCCGATAGCTGGTCAACCGACCAAGCTGACTGGGCGACGGAAGATGAGTATCGTTACTGGAACGGAAACGATGCTGGAGGTGAAACAACTCCGTCTTCAAATTCGCGTGCAGGAAGTGAGCCGCCGAGTAAGAAATCGAGAAGTAATTCGCAAGACGGTGGTGGTGGCAGTGGTGGTGGTGGTGGAGGTTCGAATCGCGCAAAAGCGATTGGGAAAATGTTTTTTAAGACGAAACTATGCTGTAAGTTTCGTGTGGGGACATGTCCTTATATAACGAACTGTAATTTTGCTCATAGTGTGGAGGAGCTGCGTCGGCCGCCGGAGAATTGGCAGGAGATTGTGGCTGCTCATGAAGAAGAGAGGAGTGTGATTGAGCAGCCTAGGGAGGAGTTTCAGATACCGACGGTTGGGTCGAGTACTTTTGTTGGGGAGAGTATGAATAATAGGTCTTATAAGGGGAGACATTGTAAGAAATTTTATACTGAGGAAGGTTGTCCTTATGGAGATAGTTGTACTTTTCTTCATGATGAGCAATCGAAGAATCGTGAAAGTGTGGCGATTAGTTTAGGTCCTGGTGGTTATGGTGGTGGTGGAGGTGGTGGAGGAGGAGGAGGTGGGAGTGTTGGTAGTGTTGGTGGTAGTGGTAGTGGTGTTGTTGTTGTTGCAGCTGGTGCGGCCGCGGTTGGGAATGGACCTAATTTGAAGCCTTCGAATTGGAAAACTAGGATTTGTAATAAGTGGGAGATGACTGGGTATTGTCCCTTTGGTAACAAATGCCATTTTGCTCATGGTGCTACAGGTATGATACAATCCATTTTGATGATTTTGTTATGTGAATTGGATTAAAGATTTTAATTTTATGGTAATTGAGGTGTAATGTTGTGTTGATATGATTATAGAAAGTGCTATTAGAATTGGAAAGTTATAAATAGTTTGTGTTGTGGAGTTGTGGCAGTGTTTTCTTACCATTTGGATACAATTTTGGGAATTGATGTTAGATTCTTTTTATCCATACAAGATTGGTTTTTTCTTCATTTAATATGGTCTGTTACAGCTTTGATTTCTACTATTTTGTTTTAATGAGTACCCTGCATTGTCCCTAGTGTCAATTTTGTTTTGGTTGATGCTAAGGCAGAACATAACATTTTGATATGTATGTGAATGTGGTGTTTCATTGAGCATAACATTTTGTTTGTAAGTTGCCGACTTGAGTAATCTATGCAATTTTTTTGTATAAAAGTAATTACATTCTAGAGAAGATACACACGATAGTAGAAATGCACCTTCCTTATGTTTTGCACAATGAAAAACATAAACAACTAAGTTTACAACAGAGAAGAACTCTGAAGACGAAACTGTGCAAATTTCCAAGTGTTTTTTGGTTTACAGTGCTTCCTTTTTTGCGATTACTTTTCATATGCCTTGTATGCTTCAAATTCAAATGTCTAAGCCTTCACTTTCTGATTAAGAAAAGCGCTGACTTCAAGAGATAAGAAAAGAATAGTTTCATGAGTGGTGGGTTCAGAATGAAAGATGGCAGCTTAGATCTAATCTGTGTTGTCAAATAGCAGTGCTACAGCGCTATCGTGTGGCAGAATTTTAATAAATTGCTATTGTTCCACGAATATGCGATTAAGTACAAAGTGTTGTCAAATAGCGTCTATAGGATAGCACAGTACGTAGTGGAATTCGAACAAATCACTCTCTTTTTGTGATCCGCAATCGGCAACATACTTTCATTGCTTTGATGTTTGGCCTTGTTCATTATGTGCATGTTTGGATTGACGGCGAGTTTAGCGAAATCGCGGTGGCACTGTGATTTTGTTGAAACTTCAAAGTGTAGATTTTGTCTAAATCGCAGTGAGTTGCCATGATTATGTCATGCCAGTCTCACCGTCGATCCAAACATGCACATATACATTTTCAAAAACATTTTCTCAGATTGATACACGAGTGTTTTATTGGCTTAAATTGATTATCTGTCGGAATGATGTATAACTTATTTTTATATAAACTTGTCTTTGATATTGTGAGTTTGTGACTGCAGAATTACACAGATATGGAGGTGGGCTTATGGAAGGAGAAAGCAGAGACGGTGTTTCTGTTGTTGCGTCTGACACAAAACAGGGTGTACCTTCCAAAACTCATGCTGATAATGTGGTTGCATCAAATCCTCCTACTGGTTCAGATGTTTATCATCTTGGAGTCCCTTCACAAAGACCTTCCATTGTGAGTCAGAGGCCAGGACAGAGAGCTCATCAGAAGTGGAAAGGTCCCGATAAAATCAGTAGGATATATGGCGATTGGATCGATGACTTCGAATAG

Protein sequence

>MS.gene009015.t1

MDYNRDGNVVQIITTGGGAADSWSTDQADWATEDEYRYWNGNDAGGETTPSSNSRAGSEPPSKKSRSNSQDGGGGSGGGGGGSNRAKAIGKMFFKTKLCCKFRVGTCPYITNCNFAHSVEELRRPPENWQEIVAAHEEERSVIEQPREEFQIPTVGSSTFVGESMNNRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYGGGGGGGGGGGGSVGSVGGSGSGVVVVAAGAAAVGNGPNLKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYGGGLMEGESRDGVSVVASDTKQGVPSKTHADNVVASNPPTGSDVYHLGVPSQRPSIVSQRPGQRAHQKWKGPDKISRIYGDWIDDFE