Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009088.t1 | XP_013445993.1 | 90.2 | 429 | 31 | 3 | 1 | 428 | 1 | 419 | 5.40E-217 | 763.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009088.t1 | Q0WNR2 | 33.0 | 446 | 256 | 11 | 3 | 425 | 10 | 435 | 1.6e-55 | 218.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009088.t1 | A0A072U2K1 | 90.2 | 429 | 31 | 3 | 1 | 428 | 1 | 419 | 3.9e-217 | 763.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene009088.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009088.t1 | MTR_8g064700 | 90.210 | 429 | 31 | 3 | 1 | 428 | 1 | 419 | 0.0 | 796 |
MS.gene009088.t1 | MTR_1g112680 | 30.534 | 524 | 250 | 17 | 3 | 428 | 9 | 516 | 1.18e-69 | 229 |
MS.gene009088.t1 | MTR_2g038040 | 32.955 | 176 | 107 | 4 | 243 | 413 | 51 | 220 | 1.83e-24 | 101 |
MS.gene009088.t1 | MTR_3g498695 | 30.000 | 220 | 127 | 5 | 218 | 424 | 270 | 475 | 4.71e-20 | 92.4 |
MS.gene009088.t1 | MTR_3g498695 | 29.864 | 221 | 127 | 5 | 218 | 424 | 270 | 476 | 6.23e-20 | 92.0 |
MS.gene009088.t1 | MTR_4g091910 | 30.918 | 207 | 114 | 5 | 222 | 422 | 19 | 202 | 3.90e-19 | 85.9 |
MS.gene009088.t1 | MTR_3g030700 | 31.220 | 205 | 124 | 5 | 228 | 425 | 176 | 370 | 9.80e-19 | 87.8 |
MS.gene009088.t1 | MTR_2g084280 | 31.481 | 162 | 93 | 3 | 236 | 396 | 125 | 269 | 2.37e-18 | 85.9 |
MS.gene009088.t1 | MTR_4g057270 | 31.288 | 163 | 98 | 4 | 235 | 396 | 140 | 289 | 3.23e-17 | 82.8 |
MS.gene009088.t1 | MTR_2g081040 | 27.368 | 190 | 122 | 4 | 243 | 425 | 176 | 356 | 8.51e-17 | 81.6 |
MS.gene009088.t1 | MTR_4g091990 | 28.571 | 168 | 87 | 1 | 235 | 402 | 36 | 170 | 1.32e-16 | 78.2 |
MS.gene009088.t1 | MTR_7g083900 | 28.283 | 198 | 110 | 5 | 243 | 424 | 285 | 466 | 1.81e-16 | 81.6 |
MS.gene009088.t1 | MTR_7g083900 | 28.141 | 199 | 110 | 5 | 243 | 424 | 285 | 467 | 2.41e-16 | 81.3 |
MS.gene009088.t1 | MTR_3g104100 | 28.205 | 195 | 114 | 6 | 243 | 425 | 194 | 374 | 6.97e-16 | 79.3 |
MS.gene009088.t1 | MTR_4g097950 | 30.366 | 191 | 110 | 5 | 246 | 425 | 72 | 250 | 5.19e-15 | 75.1 |
MS.gene009088.t1 | MTR_2g010450 | 28.177 | 181 | 117 | 3 | 227 | 407 | 160 | 327 | 1.55e-13 | 72.0 |
MS.gene009088.t1 | MTR_4g092700 | 28.352 | 261 | 149 | 10 | 159 | 407 | 73 | 307 | 2.84e-13 | 70.9 |
MS.gene009088.t1 | MTR_4g067010 | 25.434 | 173 | 104 | 3 | 239 | 407 | 142 | 293 | 5.10e-13 | 70.1 |
MS.gene009088.t1 | MTR_0250s0040 | 25.610 | 164 | 106 | 3 | 245 | 407 | 89 | 237 | 8.20e-13 | 68.6 |
MS.gene009088.t1 | MTR_5g014600 | 26.190 | 168 | 111 | 3 | 246 | 407 | 151 | 311 | 1.36e-12 | 68.9 |
MS.gene009088.t1 | MTR_0246s0020 | 25.309 | 162 | 111 | 4 | 246 | 407 | 200 | 351 | 5.59e-12 | 67.4 |
MS.gene009088.t1 | MTR_5g030430 | 29.630 | 162 | 104 | 4 | 248 | 408 | 497 | 649 | 5.65e-12 | 68.2 |
MS.gene009088.t1 | MTR_0246s0020 | 25.309 | 162 | 111 | 4 | 246 | 407 | 200 | 351 | 6.68e-12 | 67.0 |
MS.gene009088.t1 | MTR_5g014520 | 23.445 | 209 | 138 | 4 | 207 | 407 | 112 | 306 | 9.68e-12 | 66.2 |
MS.gene009088.t1 | MTR_8g067280 | 29.012 | 162 | 103 | 5 | 249 | 408 | 467 | 618 | 1.06e-11 | 67.4 |
MS.gene009088.t1 | MTR_4g009540 | 22.684 | 313 | 207 | 10 | 96 | 407 | 29 | 307 | 3.44e-11 | 64.3 |
MS.gene009088.t1 | MTR_4g009540 | 23.003 | 313 | 206 | 11 | 96 | 407 | 29 | 307 | 5.53e-11 | 63.9 |
MS.gene009088.t1 | MTR_0011s0260 | 26.543 | 162 | 105 | 3 | 246 | 407 | 185 | 332 | 6.36e-11 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009088.t1 | AT1G10610 | 31.839 | 446 | 261 | 10 | 3 | 425 | 10 | 435 | 5.81e-67 | 220 |
MS.gene009088.t1 | AT1G10610 | 30.238 | 420 | 250 | 10 | 29 | 425 | 6 | 405 | 4.38e-52 | 180 |
MS.gene009088.t1 | AT2G16910 | 42.763 | 152 | 73 | 5 | 3 | 147 | 8 | 152 | 4.14e-36 | 140 |
MS.gene009088.t1 | AT2G16910 | 37.186 | 199 | 110 | 4 | 242 | 428 | 312 | 507 | 7.94e-30 | 122 |
MS.gene009088.t1 | AT1G10610 | 27.451 | 357 | 222 | 8 | 87 | 425 | 1 | 338 | 1.25e-32 | 126 |
MS.gene009088.t1 | AT5G57150 | 31.667 | 180 | 114 | 3 | 243 | 420 | 53 | 225 | 2.31e-26 | 107 |
MS.gene009088.t1 | AT5G57150 | 32.353 | 170 | 106 | 3 | 243 | 410 | 54 | 216 | 5.92e-26 | 105 |
MS.gene009088.t1 | AT5G57150 | 33.133 | 166 | 106 | 3 | 243 | 408 | 53 | 213 | 6.53e-26 | 105 |
MS.gene009088.t1 | AT5G57150 | 32.738 | 168 | 104 | 3 | 243 | 408 | 54 | 214 | 7.37e-26 | 104 |
MS.gene009088.t1 | AT5G57150 | 33.133 | 166 | 106 | 3 | 243 | 408 | 54 | 214 | 1.31e-25 | 105 |
MS.gene009088.t1 | AT4G29930 | 28.492 | 179 | 113 | 4 | 243 | 410 | 53 | 227 | 2.33e-19 | 87.8 |
MS.gene009088.t1 | AT4G29930 | 28.492 | 179 | 113 | 4 | 243 | 410 | 53 | 227 | 2.33e-19 | 87.8 |
MS.gene009088.t1 | AT4G29930 | 28.652 | 178 | 112 | 4 | 243 | 409 | 53 | 226 | 2.69e-19 | 87.4 |
MS.gene009088.t1 | AT4G29930 | 27.545 | 167 | 102 | 2 | 243 | 409 | 53 | 200 | 5.38e-19 | 85.9 |
MS.gene009088.t1 | AT4G29930 | 26.786 | 168 | 101 | 3 | 243 | 410 | 53 | 198 | 2.16e-18 | 84.3 |
MS.gene009088.t1 | AT4G29930 | 26.946 | 167 | 100 | 3 | 243 | 409 | 53 | 197 | 2.23e-18 | 84.0 |
MS.gene009088.t1 | AT2G28160 | 30.818 | 159 | 97 | 3 | 239 | 396 | 126 | 272 | 4.19e-18 | 85.1 |
MS.gene009088.t1 | AT2G28160 | 30.818 | 159 | 97 | 3 | 239 | 396 | 126 | 272 | 4.45e-18 | 85.1 |
MS.gene009088.t1 | AT1G12860 | 32.065 | 184 | 115 | 4 | 243 | 424 | 266 | 441 | 4.85e-18 | 86.3 |
MS.gene009088.t1 | AT1G12860 | 34.337 | 166 | 101 | 3 | 243 | 408 | 266 | 423 | 2.18e-17 | 84.3 |
MS.gene009088.t1 | AT3G26744 | 27.320 | 194 | 115 | 3 | 243 | 424 | 306 | 485 | 6.44e-16 | 80.1 |
MS.gene009088.t1 | AT3G26744 | 27.320 | 194 | 115 | 3 | 243 | 424 | 306 | 485 | 6.44e-16 | 80.1 |
MS.gene009088.t1 | AT3G26744 | 27.320 | 194 | 115 | 3 | 243 | 424 | 306 | 485 | 6.44e-16 | 80.1 |
MS.gene009088.t1 | AT3G26744 | 28.409 | 176 | 102 | 2 | 243 | 408 | 306 | 467 | 2.43e-15 | 78.2 |
MS.gene009088.t1 | AT4G29930 | 45.070 | 71 | 35 | 1 | 243 | 313 | 53 | 119 | 1.24e-14 | 72.4 |
MS.gene009088.t1 | AT5G46760 | 28.111 | 217 | 117 | 6 | 229 | 424 | 387 | 585 | 1.77e-14 | 75.9 |
MS.gene009088.t1 | AT4G21330 | 28.652 | 178 | 109 | 4 | 229 | 402 | 16 | 179 | 2.50e-14 | 72.0 |
MS.gene009088.t1 | AT4G37850 | 28.111 | 217 | 115 | 7 | 204 | 414 | 128 | 309 | 1.13e-13 | 72.0 |
MS.gene009088.t1 | AT4G37850 | 28.111 | 217 | 115 | 7 | 204 | 414 | 128 | 309 | 1.13e-13 | 72.0 |
MS.gene009088.t1 | AT4G17880 | 31.138 | 167 | 84 | 7 | 248 | 408 | 420 | 561 | 1.68e-13 | 72.8 |
MS.gene009088.t1 | AT5G41315 | 24.444 | 180 | 121 | 3 | 232 | 399 | 429 | 605 | 1.28e-12 | 70.1 |
MS.gene009088.t1 | AT5G41315 | 24.444 | 180 | 121 | 3 | 232 | 399 | 434 | 610 | 1.39e-12 | 70.1 |
MS.gene009088.t1 | AT5G41315 | 24.444 | 180 | 121 | 3 | 232 | 399 | 437 | 613 | 1.44e-12 | 70.1 |
MS.gene009088.t1 | AT1G63650 | 26.744 | 172 | 111 | 4 | 236 | 399 | 400 | 564 | 3.87e-12 | 68.6 |
MS.gene009088.t1 | AT1G63650 | 26.744 | 172 | 111 | 4 | 236 | 399 | 400 | 564 | 3.87e-12 | 68.6 |
MS.gene009088.t1 | AT1G63650 | 26.744 | 172 | 111 | 4 | 236 | 399 | 400 | 564 | 3.87e-12 | 68.6 |
MS.gene009088.t1 | AT1G32640 | 31.522 | 184 | 99 | 7 | 248 | 428 | 456 | 615 | 8.75e-12 | 67.4 |
MS.gene009088.t1 | AT5G46830 | 26.667 | 180 | 114 | 5 | 248 | 426 | 347 | 509 | 5.11e-11 | 65.1 |
Find 71 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGATATACCTTGGTTATATT+AGG | 0.201515 | 8.1:-38671538 | None:intergenic |
TTACAGTGTCTCTTTATTCT+AGG | 0.204070 | 8.1:+38670549 | MS.gene009088:CDS |
TATGTTGTTGTTTGGAAATA+TGG | 0.204753 | 8.1:+38670149 | MS.gene009088:CDS |
TTCATGATATTTATATCTTC+TGG | 0.214432 | 8.1:-38671136 | None:intergenic |
TCAACAAGACCGCCAATAAT+AGG | 0.227144 | 8.1:-38670996 | None:intergenic |
CAAAGTTCTGAACATTATTA+TGG | 0.236450 | 8.1:+38672266 | MS.gene009088:CDS |
ATCGGTGAGAGGTAGGTTTC+TGG | 0.265091 | 8.1:-38671930 | None:intergenic |
TTCTGACTGGATGATGAAAA+AGG | 0.289400 | 8.1:-38670493 | None:intergenic |
GATATACCTTGGTTATATTA+GGG | 0.312920 | 8.1:-38671537 | None:intergenic |
GAATAAAGAGACACTGTAAA+AGG | 0.342258 | 8.1:-38670545 | None:intergenic |
CTTGGGATTATGTTGTTGTT+TGG | 0.348246 | 8.1:+38670141 | MS.gene009088:CDS |
ATGGAAGCAATAGATTCATT+TGG | 0.358052 | 8.1:+38672204 | MS.gene009088:CDS |
TCATGATATTTATATCTTCT+GGG | 0.361224 | 8.1:-38671135 | None:intergenic |
ATAATTTGTCTTCCATTTGT+AGG | 0.364717 | 8.1:+38670465 | MS.gene009088:CDS |
TTGTAGGTTTATTGAGTGGT+TGG | 0.389203 | 8.1:+38670379 | MS.gene009088:intron |
TTGCGTCTTTCTAGTGAAAT+CGG | 0.394853 | 8.1:-38671969 | None:intergenic |
CAACAAGACCGCCAATAATA+GGG | 0.398653 | 8.1:-38670995 | None:intergenic |
TATAAAGCAAGAAGCAATAT+CGG | 0.417550 | 8.1:+38671186 | MS.gene009088:CDS |
ATATACTCTCTAAGTTTCTT+CGG | 0.420467 | 8.1:-38673069 | None:intergenic |
GCAAACATGACAACATTTGA+TGG | 0.420827 | 8.1:+38672243 | MS.gene009088:CDS |
ACCTCATGGATAAGCCATCT+TGG | 0.422456 | 8.1:-38670856 | None:intergenic |
TGTAGGTTTATTGAGTGGTT+GGG | 0.424285 | 8.1:+38670380 | MS.gene009088:intron |
GGATGCGATTGAATATATAA+TGG | 0.425745 | 8.1:+38671790 | MS.gene009088:CDS |
ATCTTATCACAGAGAGGAAT+AGG | 0.426459 | 8.1:+38671470 | MS.gene009088:CDS |
TCGAGTGTCAATTGTGGAAA+TGG | 0.426586 | 8.1:+38671391 | MS.gene009088:CDS |
CTTTGTTGAGAGGAAAGCTT+GGG | 0.443033 | 8.1:+38670124 | MS.gene009088:CDS |
TCTGAACATTATTATGGTTG+AGG | 0.445865 | 8.1:+38672272 | MS.gene009088:CDS |
AATGATAAGTGCTCAGTTGA+AGG | 0.446352 | 8.1:-38671271 | None:intergenic |
TGGTTGGGTTGTTGCTGTTG+TGG | 0.457628 | 8.1:+38670395 | MS.gene009088:CDS |
TCACAAGTCTTTGTTCTGAC+TGG | 0.460884 | 8.1:-38670506 | None:intergenic |
TAATTTGTCTTCCATTTGTA+GGG | 0.462306 | 8.1:+38670466 | MS.gene009088:CDS |
AGAGAAAGAATTTCAAGAAA+AGG | 0.468091 | 8.1:+38671826 | MS.gene009088:CDS |
AGATAAAGAAAATATTGTTA+AGG | 0.491618 | 8.1:+38671417 | MS.gene009088:CDS |
TTGGGTTGTTGCTGTTGTGG+TGG | 0.496316 | 8.1:+38670398 | MS.gene009088:CDS |
CCTTTGTTGAGAGGAAAGCT+TGG | 0.499952 | 8.1:+38670123 | MS.gene009088:CDS |
TGAGAAGGTGAAGTTGAAAG+AGG | 0.517970 | 8.1:+38670427 | MS.gene009088:CDS |
TGTCCCACAGGCAACTGCGC+AGG | 0.521275 | 8.1:+38673038 | MS.gene009088:intron |
TTCTTAGACCCTTTGTTGAG+AGG | 0.521603 | 8.1:+38670114 | MS.gene009088:CDS |
TTTCACTAGAAAGACGCAAA+TGG | 0.523736 | 8.1:+38671973 | MS.gene009088:CDS |
CAAGCTTTCCTCTCAACAAA+GGG | 0.525491 | 8.1:-38670122 | None:intergenic |
GGTCAAGGCTTTAGAAGTTG+AGG | 0.529656 | 8.1:+38671847 | MS.gene009088:CDS |
AGACACTGTAAAAGGAAGCT+TGG | 0.535351 | 8.1:-38670537 | None:intergenic |
CTTTAGAAGTTGAGGACTGT+GGG | 0.546640 | 8.1:+38671855 | MS.gene009088:CDS |
CCAAGCTTTCCTCTCAACAA+AGG | 0.551769 | 8.1:-38670123 | None:intergenic |
GGACGAACTTTGATTAAGAT+CGG | 0.554545 | 8.1:-38671948 | None:intergenic |
GATTAAGATCGGTGAGAGGT+AGG | 0.559917 | 8.1:-38671937 | None:intergenic |
GCATGATACACTTTCTCTTG+AGG | 0.560146 | 8.1:-38671442 | None:intergenic |
GCTAAAATTGAAGTTCATGT+TGG | 0.562915 | 8.1:-38671221 | None:intergenic |
TTATCATTTGATTCAAACGA+TGG | 0.566969 | 8.1:+38671286 | MS.gene009088:CDS |
AGTATATGATGCAGCAAACA+AGG | 0.569068 | 8.1:+38673085 | MS.gene009088:CDS |
AAAGACAAAGAGCTTGGAGA+AGG | 0.576282 | 8.1:+38671905 | MS.gene009088:CDS |
AGAATTTCAAGAAAAGGTCA+AGG | 0.584855 | 8.1:+38671832 | MS.gene009088:CDS |
GTGATATTGCTACCTCTGCA+TGG | 0.587930 | 8.1:-38670828 | None:intergenic |
CAATATCACAACAACCAAGA+TGG | 0.588239 | 8.1:+38670842 | MS.gene009088:CDS |
GTAGAAGTGAATCATATCAC+CGG | 0.592424 | 8.1:+38672123 | MS.gene009088:CDS |
GCTTTAGAAGTTGAGGACTG+TGG | 0.603990 | 8.1:+38671854 | MS.gene009088:CDS |
TGTAGTTCGAGTGTCAATTG+TGG | 0.604436 | 8.1:+38671385 | MS.gene009088:CDS |
GGTTGATTCAAATATTCAAG+CGG | 0.621147 | 8.1:-38671319 | None:intergenic |
AATATATAATGGAATTGCAG+AGG | 0.626528 | 8.1:+38671801 | MS.gene009088:CDS |
GGACAGAGTAGCAATTCTTG+AGG | 0.640821 | 8.1:+38671769 | MS.gene009088:CDS |
GATCTACAGTGTCCATGCAG+AGG | 0.648208 | 8.1:+38670816 | MS.gene009088:intron |
CACTAGAAAGACGCAAATGG+AGG | 0.648901 | 8.1:+38671976 | MS.gene009088:CDS |
AGGAGAAACAGAATAAAACA+AGG | 0.649066 | 8.1:+38671490 | MS.gene009088:CDS |
TCTAGTCCCTAATATAACCA+AGG | 0.659673 | 8.1:+38671531 | MS.gene009088:CDS |
ACCAAGATGGCTTATCCATG+AGG | 0.659718 | 8.1:+38670855 | MS.gene009088:CDS |
GGAGAAACAGAATAAAACAA+GGG | 0.669280 | 8.1:+38671491 | MS.gene009088:CDS |
CTTTGATTAAGATCGGTGAG+AGG | 0.675164 | 8.1:-38671941 | None:intergenic |
TTGTGGTGGAAATATTGAGA+AGG | 0.686408 | 8.1:+38670412 | MS.gene009088:CDS |
TTGTGCTGTGAGCAGAAGCA+AGG | 0.689984 | 8.1:+38672165 | MS.gene009088:CDS |
AGTCAGAACAAAGACTTGTG+AGG | 0.691527 | 8.1:+38670508 | MS.gene009088:CDS |
AATATGGAAATGATCCAACA+AGG | 0.709023 | 8.1:+38670165 | MS.gene009088:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATGATTAAACATAAAAAAA+TGG | - | chr8.1:38670769-38670788 | None:intergenic | 10.0% |
!! | AAAATTAGATATTTCATTCA+TGG | + | chr8.1:38672894-38672913 | MS.gene009088:intron | 15.0% |
!! | AGATAAAGAAAATATTGTTA+AGG | + | chr8.1:38671417-38671436 | MS.gene009088:CDS | 15.0% |
!!! | TAATTTTTCAAAATTGTCTA+CGG | - | chr8.1:38672881-38672900 | None:intergenic | 15.0% |
!! | AAATCTTAGCACTTATTTAT+TGG | + | chr8.1:38671047-38671066 | MS.gene009088:intron | 20.0% |
!! | AAATTTCAATTAAGATAGTG+AGG | - | chr8.1:38672688-38672707 | None:intergenic | 20.0% |
!! | AATTTCAATTAAGATAGTGA+GGG | - | chr8.1:38672687-38672706 | None:intergenic | 20.0% |
!! | ACAAAAATTAATTTACCTCA+TGG | - | chr8.1:38670873-38670892 | None:intergenic | 20.0% |
!! | ATTGAGTATTTAAATTAGAC+AGG | + | chr8.1:38672426-38672445 | MS.gene009088:intron | 20.0% |
!! | TAAACAATTTAGATATACCT+TGG | - | chr8.1:38671551-38671570 | None:intergenic | 20.0% |
!! | TATTTATGCACTTAACTATT+AGG | - | chr8.1:38672311-38672330 | None:intergenic | 20.0% |
!! | TCATGATATTTATATCTTCT+GGG | - | chr8.1:38671138-38671157 | None:intergenic | 20.0% |
!! | TCTAATTTAAATACTCAATC+TGG | - | chr8.1:38672425-38672444 | None:intergenic | 20.0% |
!! | TGTTTAATCATTGAAATGAA+AGG | + | chr8.1:38670777-38670796 | MS.gene009088:intron | 20.0% |
!! | TTACTAATGAATAACAAGAT+AGG | - | chr8.1:38670200-38670219 | None:intergenic | 20.0% |
!! | TTCAATATAATTATGTGTGT+CGG | - | chr8.1:38670668-38670687 | None:intergenic | 20.0% |
!! | TTCATGATATTTATATCTTC+TGG | - | chr8.1:38671139-38671158 | None:intergenic | 20.0% |
!!! | AATTTTATTGCTTCTTTTCT+TGG | + | chr8.1:38672062-38672081 | MS.gene009088:intron | 20.0% |
!!! | TATATTCAATTTGAAGTGTT+CGG | - | chr8.1:38672785-38672804 | None:intergenic | 20.0% |
!!! | TCATTTTCTCAAGTTATTAT+TGG | + | chr8.1:38670266-38670285 | MS.gene009088:intron | 20.0% |
! | AACCTACAAAAGAGAAATAT+TGG | - | chr8.1:38670368-38670387 | None:intergenic | 25.0% |
! | AATGAAGCATAAATACTCTT+CGG | + | chr8.1:38670598-38670617 | MS.gene009088:intron | 25.0% |
! | AGAGAAAGAATTTCAAGAAA+AGG | + | chr8.1:38671826-38671845 | MS.gene009088:CDS | 25.0% |
! | AGATATACCTTGGTTATATT+AGG | - | chr8.1:38671541-38671560 | None:intergenic | 25.0% |
! | ATATACTCTCTAAGTTTCTT+CGG | - | chr8.1:38673072-38673091 | None:intergenic | 25.0% |
! | CCAAAAACGCAATAAAATTT+CGG | + | chr8.1:38671351-38671370 | MS.gene009088:CDS | 25.0% |
! | GATATACCTTGGTTATATTA+GGG | - | chr8.1:38671540-38671559 | None:intergenic | 25.0% |
! | TAACCTCATTACAATAGAAA+GGG | - | chr8.1:38673013-38673032 | None:intergenic | 25.0% |
! | TATAAAGCAAGAAGCAATAT+CGG | + | chr8.1:38671186-38671205 | MS.gene009088:CDS | 25.0% |
! | TGTAACCATATTTAAAGACT+AGG | + | chr8.1:38672925-38672944 | MS.gene009088:intron | 25.0% |
! | TTAACCTCATTACAATAGAA+AGG | - | chr8.1:38673014-38673033 | None:intergenic | 25.0% |
! | TTATCATTTGATTCAAACGA+TGG | + | chr8.1:38671286-38671305 | MS.gene009088:CDS | 25.0% |
! | TTGAAGCTTCAACAAAATTA+CGG | + | chr8.1:38671670-38671689 | MS.gene009088:intron | 25.0% |
!! | AATATATAATGGAATTGCAG+AGG | + | chr8.1:38671801-38671820 | MS.gene009088:CDS | 25.0% |
!! | ATAATTTGTCTTCCATTTGT+AGG | + | chr8.1:38670465-38670484 | MS.gene009088:CDS | 25.0% |
!! | ATCCAATATTTCTCTTTTGT+AGG | + | chr8.1:38670363-38670382 | MS.gene009088:intron | 25.0% |
!! | CTTAATCATGAAATCTTTTC+CGG | - | chr8.1:38672145-38672164 | None:intergenic | 25.0% |
!! | GAGGTAAATTAATTTTTGTG+TGG | + | chr8.1:38670874-38670893 | MS.gene009088:intron | 25.0% |
!! | GGAATGTAAAAAGTATGATT+TGG | - | chr8.1:38672404-38672423 | None:intergenic | 25.0% |
!! | TAATTTGTCTTCCATTTGTA+GGG | + | chr8.1:38670466-38670485 | MS.gene009088:CDS | 25.0% |
!!! | CAAAGTTCTGAACATTATTA+TGG | + | chr8.1:38672266-38672285 | MS.gene009088:CDS | 25.0% |
!!! | CAAGTTTTAATCCCTATTAT+TGG | + | chr8.1:38670984-38671003 | MS.gene009088:CDS | 25.0% |
!!! | GTCGTTTTATATTTATCAGT+TGG | + | chr8.1:38672738-38672757 | MS.gene009088:intron | 25.0% |
!!! | TAAAAAGTATGATTTGGTGT+GGG | - | chr8.1:38672398-38672417 | None:intergenic | 25.0% |
!!! | TATGTTGTTGTTTGGAAATA+TGG | + | chr8.1:38670149-38670168 | MS.gene009088:CDS | 25.0% |
!!! | TTAACTGTTAATGTTTTGAC+AGG | + | chr8.1:38670947-38670966 | MS.gene009088:intron | 25.0% |
AACATAGCCTAATCATTCTT+TGG | - | chr8.1:38672473-38672492 | None:intergenic | 30.0% | |
AAGAATGATTAGGCTATGTT+TGG | + | chr8.1:38672473-38672492 | MS.gene009088:intron | 30.0% | |
AATATAATTATGTGTGTCGG+TGG | - | chr8.1:38670665-38670684 | None:intergenic | 30.0% | |
AATATGGAAATGATCCAACA+AGG | + | chr8.1:38670165-38670184 | MS.gene009088:CDS | 30.0% | |
ACATTATTATGGTTGAGGTA+AGG | + | chr8.1:38672277-38672296 | MS.gene009088:intron | 30.0% | |
AGAATTTCAAGAAAAGGTCA+AGG | + | chr8.1:38671832-38671851 | MS.gene009088:CDS | 30.0% | |
AGGAGAAACAGAATAAAACA+AGG | + | chr8.1:38671490-38671509 | MS.gene009088:CDS | 30.0% | |
ATGGAAGCAATAGATTCATT+TGG | + | chr8.1:38672204-38672223 | MS.gene009088:CDS | 30.0% | |
CATTATTATGGTTGAGGTAA+GGG | + | chr8.1:38672278-38672297 | MS.gene009088:intron | 30.0% | |
CTAAAAATCTTATCACAGAG+AGG | + | chr8.1:38671464-38671483 | MS.gene009088:CDS | 30.0% | |
GAATAAAGAGACACTGTAAA+AGG | - | chr8.1:38670548-38670567 | None:intergenic | 30.0% | |
GCTAAAATTGAAGTTCATGT+TGG | - | chr8.1:38671224-38671243 | None:intergenic | 30.0% | |
GGAGAAACAGAATAAAACAA+GGG | + | chr8.1:38671491-38671510 | MS.gene009088:CDS | 30.0% | |
GGATGCGATTGAATATATAA+TGG | + | chr8.1:38671790-38671809 | MS.gene009088:CDS | 30.0% | |
TAACTTGAGAAAATGACATC+AGG | - | chr8.1:38670262-38670281 | None:intergenic | 30.0% | |
TATGAAACACATATACTCCT+CGG | + | chr8.1:38670225-38670244 | MS.gene009088:intron | 30.0% | |
TCTGAACATTATTATGGTTG+AGG | + | chr8.1:38672272-38672291 | MS.gene009088:CDS | 30.0% | |
TGAAAAATCATGAGCTAGTT+TGG | + | chr8.1:38672352-38672371 | MS.gene009088:intron | 30.0% | |
TGAGTTTGCCATAATTACAT+TGG | + | chr8.1:38671618-38671637 | MS.gene009088:intron | 30.0% | |
TTACAGTGTCTCTTTATTCT+AGG | + | chr8.1:38670549-38670568 | MS.gene009088:CDS | 30.0% | |
TTTGAGCTTATAGCTTACAT+CGG | + | chr8.1:38672651-38672670 | MS.gene009088:intron | 30.0% | |
! | AACTAGCTCATGATTTTTCA+TGG | - | chr8.1:38672352-38672371 | None:intergenic | 30.0% |
! | ATCGACCTAGTCTTTAAATA+TGG | - | chr8.1:38672933-38672952 | None:intergenic | 30.0% |
! | CCGAAATTTTATTGCGTTTT+TGG | - | chr8.1:38671354-38671373 | None:intergenic | 30.0% |
! | GATGTTCTTTTACTATGTCA+TGG | + | chr8.1:38672027-38672046 | MS.gene009088:intron | 30.0% |
! | GGTTGATTCAAATATTCAAG+CGG | - | chr8.1:38671322-38671341 | None:intergenic | 30.0% |
! | TATAACTTTTACCGAAATCG+TGG | - | chr8.1:38671648-38671667 | None:intergenic | 30.0% |
! | TCTTTTGTAGGTTTATTGAG+TGG | + | chr8.1:38670375-38670394 | MS.gene009088:intron | 30.0% |
!! | AACTTCAATTTTAGCATGGA+AGG | + | chr8.1:38671229-38671248 | MS.gene009088:CDS | 30.0% |
!! | CATGAACTTCAATTTTAGCA+TGG | + | chr8.1:38671225-38671244 | MS.gene009088:CDS | 30.0% |
!! | GTAAAAAGTATGATTTGGTG+TGG | - | chr8.1:38672399-38672418 | None:intergenic | 30.0% |
!! | GTTTTAATCCCTATTATTGG+CGG | + | chr8.1:38670987-38671006 | MS.gene009088:CDS | 30.0% |
!!! | ATAGGTTTTTAGTACCTTGT+TGG | - | chr8.1:38670182-38670201 | None:intergenic | 30.0% |
AAGGGCAACTTATGAACTTA+CGG | - | chr8.1:38672995-38673014 | None:intergenic | 35.0% | |
AATGATAAGTGCTCAGTTGA+AGG | - | chr8.1:38671274-38671293 | None:intergenic | 35.0% | |
AGCTCAAATACTACTTGAAG+TGG | - | chr8.1:38672639-38672658 | None:intergenic | 35.0% | |
AGTATATGATGCAGCAAACA+AGG | + | chr8.1:38673085-38673104 | MS.gene009088:CDS | 35.0% | |
ATAGAGAATCAATGCTCTCA+GGG | - | chr8.1:38672967-38672986 | None:intergenic | 35.0% | |
ATCTTATCACAGAGAGGAAT+AGG | + | chr8.1:38671470-38671489 | MS.gene009088:CDS | 35.0% | |
ATGAAGTATAGACTCAGACA+CGG | - | chr8.1:38670730-38670749 | None:intergenic | 35.0% | |
CAATATCACAACAACCAAGA+TGG | + | chr8.1:38670842-38670861 | MS.gene009088:CDS | 35.0% | |
CTTCCTTCCAAAGAATGATT+AGG | + | chr8.1:38672463-38672482 | MS.gene009088:intron | 35.0% | |
GACGAGATTATAGTAGAAAG+TGG | - | chr8.1:38672816-38672835 | None:intergenic | 35.0% | |
GCAAACATGACAACATTTGA+TGG | + | chr8.1:38672243-38672262 | MS.gene009088:CDS | 35.0% | |
GCATAAATACTCTTCGGATT+AGG | + | chr8.1:38670604-38670623 | MS.gene009088:intron | 35.0% | |
GGACGAACTTTGATTAAGAT+CGG | - | chr8.1:38671951-38671970 | None:intergenic | 35.0% | |
GTAGAAGTGAATCATATCAC+CGG | + | chr8.1:38672123-38672142 | MS.gene009088:CDS | 35.0% | |
GTTCAAAAAGACAAAGAGCT+TGG | + | chr8.1:38671899-38671918 | MS.gene009088:CDS | 35.0% | |
TAGCCTAATCATTCTTTGGA+AGG | - | chr8.1:38672469-38672488 | None:intergenic | 35.0% | |
TCTAGTCCCTAATATAACCA+AGG | + | chr8.1:38671531-38671550 | MS.gene009088:CDS | 35.0% | |
TCTGACTGGATGATGAAAAA+GGG | - | chr8.1:38670495-38670514 | None:intergenic | 35.0% | |
TGTAGGTTTATTGAGTGGTT+GGG | + | chr8.1:38670380-38670399 | MS.gene009088:intron | 35.0% | |
TTCTGACTGGATGATGAAAA+AGG | - | chr8.1:38670496-38670515 | None:intergenic | 35.0% | |
TTGCCCTTTCTATTGTAATG+AGG | + | chr8.1:38673007-38673026 | MS.gene009088:intron | 35.0% | |
TTGTAGGTTTATTGAGTGGT+TGG | + | chr8.1:38670379-38670398 | MS.gene009088:intron | 35.0% | |
TTTCACTAGAAAGACGCAAA+TGG | + | chr8.1:38671973-38671992 | MS.gene009088:CDS | 35.0% | |
! | AACAAGGGCTTTTTACTCTA+AGG | + | chr8.1:38671506-38671525 | MS.gene009088:CDS | 35.0% |
! | CTTGGGATTATGTTGTTGTT+TGG | + | chr8.1:38670141-38670160 | MS.gene009088:CDS | 35.0% |
! | GTGTCTAATCCTCTCAATTT+TGG | + | chr8.1:38671741-38671760 | MS.gene009088:intron | 35.0% |
! | TTGCGTCTTTCTAGTGAAAT+CGG | - | chr8.1:38671972-38671991 | None:intergenic | 35.0% |
! | TTGTGGTGGAAATATTGAGA+AGG | + | chr8.1:38670412-38670431 | MS.gene009088:CDS | 35.0% |
!! | AAAAAGGGTATCCCTACAAA+TGG | - | chr8.1:38670480-38670499 | None:intergenic | 35.0% |
!! | TCAAGTTATTATTGGTGTCG+AGG | + | chr8.1:38670274-38670293 | MS.gene009088:intron | 35.0% |
!!! | GAGCTAGTTTGGTTTTATCT+TGG | + | chr8.1:38672363-38672382 | MS.gene009088:intron | 35.0% |
!!! | TTGCGTTTTTGGCTTTTAAG+TGG | - | chr8.1:38671343-38671362 | None:intergenic | 35.0% |
AAAGACAAAGAGCTTGGAGA+AGG | + | chr8.1:38671905-38671924 | MS.gene009088:CDS | 40.0% | |
AAATTGTCTACGGCTCTGTT+TGG | - | chr8.1:38672871-38672890 | None:intergenic | 40.0% | |
AGACACTGTAAAAGGAAGCT+TGG | - | chr8.1:38670540-38670559 | None:intergenic | 40.0% | |
AGGGCAACTTATGAACTTAC+GGG | - | chr8.1:38672994-38673013 | None:intergenic | 40.0% | |
AGTCAGAACAAAGACTTGTG+AGG | + | chr8.1:38670508-38670527 | MS.gene009088:CDS | 40.0% | |
CAACAAGACCGCCAATAATA+GGG | - | chr8.1:38670998-38671017 | None:intergenic | 40.0% | |
CAACTTATGAACTTACGGGT+GGG | - | chr8.1:38672990-38673009 | None:intergenic | 40.0% | |
CAAGCTTTCCTCTCAACAAA+GGG | - | chr8.1:38670125-38670144 | None:intergenic | 40.0% | |
CTATGTTTGGCAAGACAAAC+CGG | + | chr8.1:38672486-38672505 | MS.gene009088:intron | 40.0% | |
CTTTGATTAAGATCGGTGAG+AGG | - | chr8.1:38671944-38671963 | None:intergenic | 40.0% | |
CTTTGTTGAGAGGAAAGCTT+GGG | + | chr8.1:38670124-38670143 | MS.gene009088:CDS | 40.0% | |
GATAGAGAATCAATGCTCTC+AGG | - | chr8.1:38672968-38672987 | None:intergenic | 40.0% | |
GCATGATACACTTTCTCTTG+AGG | - | chr8.1:38671445-38671464 | None:intergenic | 40.0% | |
GTGGTGGTCCAATGTAATTA+TGG | - | chr8.1:38671629-38671648 | None:intergenic | 40.0% | |
TCAACAAGACCGCCAATAAT+AGG | - | chr8.1:38670999-38671018 | None:intergenic | 40.0% | |
TCACAAGTCTTTGTTCTGAC+TGG | - | chr8.1:38670509-38670528 | None:intergenic | 40.0% | |
TCGAGTGTCAATTGTGGAAA+TGG | + | chr8.1:38671391-38671410 | MS.gene009088:CDS | 40.0% | |
TGAGAAGGTGAAGTTGAAAG+AGG | + | chr8.1:38670427-38670446 | MS.gene009088:CDS | 40.0% | |
TGTAGTTCGAGTGTCAATTG+TGG | + | chr8.1:38671385-38671404 | MS.gene009088:CDS | 40.0% | |
TTCTTAGACCCTTTGTTGAG+AGG | + | chr8.1:38670114-38670133 | MS.gene009088:CDS | 40.0% | |
! | AACTTTTACCGAAATCGTGG+TGG | - | chr8.1:38671645-38671664 | None:intergenic | 40.0% |
! | AGAAGCAAGGTGTGTTTTCA+AGG | + | chr8.1:38672178-38672197 | MS.gene009088:CDS | 40.0% |
! | CCTATTTGTTACAAGCTAGC+CGG | - | chr8.1:38672508-38672527 | None:intergenic | 40.0% |
! | CTTTAGAAGTTGAGGACTGT+GGG | + | chr8.1:38671855-38671874 | MS.gene009088:CDS | 40.0% |
! | CTTTGGAAGGAAGTTACAAG+TGG | - | chr8.1:38672456-38672475 | None:intergenic | 40.0% |
! | GAGGTTAAATTTTGTCCCAC+AGG | + | chr8.1:38673026-38673045 | MS.gene009088:intron | 40.0% |
!! | AGGTGTGTTTTCAAGGTTGA+TGG | + | chr8.1:38672185-38672204 | MS.gene009088:CDS | 40.0% |
!! | ATCCTCTCAATTTTGGCAGA+TGG | + | chr8.1:38671748-38671767 | MS.gene009088:intron | 40.0% |
!!! | ATGTTTTGACAGGACTCAGT+TGG | + | chr8.1:38670957-38670976 | MS.gene009088:intron | 40.0% |
ACAGACACTAGACACGGATA+TGG | - | chr8.1:38670303-38670322 | None:intergenic | 45.0% | |
ACATTGGACCACCACGATTT+CGG | + | chr8.1:38671634-38671653 | MS.gene009088:intron | 45.0% | |
ACCAAGATGGCTTATCCATG+AGG | + | chr8.1:38670855-38670874 | MS.gene009088:CDS | 45.0% | |
ACCTCATGGATAAGCCATCT+TGG | - | chr8.1:38670859-38670878 | None:intergenic | 45.0% | |
ATATCCGTGTCTAGTGTCTG+TGG | + | chr8.1:38670302-38670321 | MS.gene009088:intron | 45.0% | |
ATCAGGACACATCTAATCCG+AGG | - | chr8.1:38670245-38670264 | None:intergenic | 45.0% | |
CACTAGAAAGACGCAAATGG+AGG | + | chr8.1:38671976-38671995 | MS.gene009088:CDS | 45.0% | |
CCAAGCTTTCCTCTCAACAA+AGG | - | chr8.1:38670126-38670145 | None:intergenic | 45.0% | |
CCTTTGTTGAGAGGAAAGCT+TGG | + | chr8.1:38670123-38670142 | MS.gene009088:CDS | 45.0% | |
GATTAAGATCGGTGAGAGGT+AGG | - | chr8.1:38671940-38671959 | None:intergenic | 45.0% | |
GATTAGGCGTGCAACAATGT+CGG | + | chr8.1:38670620-38670639 | MS.gene009088:intron | 45.0% | |
GCAACTTATGAACTTACGGG+TGG | - | chr8.1:38672991-38673010 | None:intergenic | 45.0% | |
GGACAGAGTAGCAATTCTTG+AGG | + | chr8.1:38671769-38671788 | MS.gene009088:CDS | 45.0% | |
GTCCATCTGCCAAAATTGAG+AGG | - | chr8.1:38671753-38671772 | None:intergenic | 45.0% | |
GTGATATTGCTACCTCTGCA+TGG | - | chr8.1:38670831-38670850 | None:intergenic | 45.0% | |
! | ATTATGTGTGTCGGTGGTGT+CGG | - | chr8.1:38670659-38670678 | None:intergenic | 45.0% |
!! | CCGGCTAGCTTGTAACAAAT+AGG | + | chr8.1:38672505-38672524 | MS.gene009088:intron | 45.0% |
!! | GCTTTAGAAGTTGAGGACTG+TGG | + | chr8.1:38671854-38671873 | MS.gene009088:CDS | 45.0% |
!! | GGTCAAGGCTTTAGAAGTTG+AGG | + | chr8.1:38671847-38671866 | MS.gene009088:CDS | 45.0% |
!! | AAATATTAAAAGATTATATT+AGG | - | chr8.1:38672091-38672110 | None:intergenic | 5.0% |
ATCGGTGAGAGGTAGGTTTC+TGG | - | chr8.1:38671933-38671952 | None:intergenic | 50.0% | |
GACACCACAGACACTAGACA+CGG | - | chr8.1:38670309-38670328 | None:intergenic | 50.0% | |
GATCTACAGTGTCCATGCAG+AGG | + | chr8.1:38670816-38670835 | MS.gene009088:intron | 50.0% | |
TTGTGCTGTGAGCAGAAGCA+AGG | + | chr8.1:38672165-38672184 | MS.gene009088:CDS | 50.0% | |
! | TGGTTGGGTTGTTGCTGTTG+TGG | + | chr8.1:38670395-38670414 | MS.gene009088:CDS | 50.0% |
! | TTGGGTTGTTGCTGTTGTGG+TGG | + | chr8.1:38670398-38670417 | MS.gene009088:CDS | 50.0% |
ATATCCTGCGCAGTTGCCTG+TGG | - | chr8.1:38673045-38673064 | None:intergenic | 55.0% | |
TATCCTGCGCAGTTGCCTGT+GGG | - | chr8.1:38673044-38673063 | None:intergenic | 55.0% | |
TGTCTGAGTCTGTGCTGCAC+AGG | + | chr8.1:38670325-38670344 | MS.gene009088:intron | 55.0% | |
TGTCCCACAGGCAACTGCGC+AGG | + | chr8.1:38673038-38673057 | MS.gene009088:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 38670098 | 38673110 | 38670098 | ID=MS.gene009088 |
chr8.1 | mRNA | 38670098 | 38673110 | 38670098 | ID=MS.gene009088.t1;Parent=MS.gene009088 |
chr8.1 | exon | 38670098 | 38670186 | 38670098 | ID=MS.gene009088.t1.exon1;Parent=MS.gene009088.t1 |
chr8.1 | CDS | 38670098 | 38670186 | 38670098 | ID=cds.MS.gene009088.t1;Parent=MS.gene009088.t1 |
chr8.1 | exon | 38670385 | 38670570 | 38670385 | ID=MS.gene009088.t1.exon2;Parent=MS.gene009088.t1 |
chr8.1 | CDS | 38670385 | 38670570 | 38670385 | ID=cds.MS.gene009088.t1;Parent=MS.gene009088.t1 |
chr8.1 | exon | 38670825 | 38670876 | 38670825 | ID=MS.gene009088.t1.exon3;Parent=MS.gene009088.t1 |
chr8.1 | CDS | 38670825 | 38670876 | 38670825 | ID=cds.MS.gene009088.t1;Parent=MS.gene009088.t1 |
chr8.1 | exon | 38670969 | 38671037 | 38670969 | ID=MS.gene009088.t1.exon4;Parent=MS.gene009088.t1 |
chr8.1 | CDS | 38670969 | 38671037 | 38670969 | ID=cds.MS.gene009088.t1;Parent=MS.gene009088.t1 |
chr8.1 | exon | 38671133 | 38671552 | 38671133 | ID=MS.gene009088.t1.exon5;Parent=MS.gene009088.t1 |
chr8.1 | CDS | 38671133 | 38671552 | 38671133 | ID=cds.MS.gene009088.t1;Parent=MS.gene009088.t1 |
chr8.1 | exon | 38671767 | 38671997 | 38671767 | ID=MS.gene009088.t1.exon6;Parent=MS.gene009088.t1 |
chr8.1 | CDS | 38671767 | 38671997 | 38671767 | ID=cds.MS.gene009088.t1;Parent=MS.gene009088.t1 |
chr8.1 | exon | 38672117 | 38672293 | 38672117 | ID=MS.gene009088.t1.exon7;Parent=MS.gene009088.t1 |
chr8.1 | CDS | 38672117 | 38672293 | 38672117 | ID=cds.MS.gene009088.t1;Parent=MS.gene009088.t1 |
chr8.1 | exon | 38673048 | 38673110 | 38673048 | ID=MS.gene009088.t1.exon8;Parent=MS.gene009088.t1 |
chr8.1 | CDS | 38673048 | 38673110 | 38673048 | ID=cds.MS.gene009088.t1;Parent=MS.gene009088.t1 |
Gene Sequence |
Protein sequence |