AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene009088


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009088.t1 MTR_8g064700 90.210 429 31 3 1 428 1 419 0.0 796
MS.gene009088.t1 MTR_1g112680 30.534 524 250 17 3 428 9 516 1.18e-69 229
MS.gene009088.t1 MTR_2g038040 32.955 176 107 4 243 413 51 220 1.83e-24 101
MS.gene009088.t1 MTR_3g498695 30.000 220 127 5 218 424 270 475 4.71e-20 92.4
MS.gene009088.t1 MTR_3g498695 29.864 221 127 5 218 424 270 476 6.23e-20 92.0
MS.gene009088.t1 MTR_4g091910 30.918 207 114 5 222 422 19 202 3.90e-19 85.9
MS.gene009088.t1 MTR_3g030700 31.220 205 124 5 228 425 176 370 9.80e-19 87.8
MS.gene009088.t1 MTR_2g084280 31.481 162 93 3 236 396 125 269 2.37e-18 85.9
MS.gene009088.t1 MTR_4g057270 31.288 163 98 4 235 396 140 289 3.23e-17 82.8
MS.gene009088.t1 MTR_2g081040 27.368 190 122 4 243 425 176 356 8.51e-17 81.6
MS.gene009088.t1 MTR_4g091990 28.571 168 87 1 235 402 36 170 1.32e-16 78.2
MS.gene009088.t1 MTR_7g083900 28.283 198 110 5 243 424 285 466 1.81e-16 81.6
MS.gene009088.t1 MTR_7g083900 28.141 199 110 5 243 424 285 467 2.41e-16 81.3
MS.gene009088.t1 MTR_3g104100 28.205 195 114 6 243 425 194 374 6.97e-16 79.3
MS.gene009088.t1 MTR_4g097950 30.366 191 110 5 246 425 72 250 5.19e-15 75.1
MS.gene009088.t1 MTR_2g010450 28.177 181 117 3 227 407 160 327 1.55e-13 72.0
MS.gene009088.t1 MTR_4g092700 28.352 261 149 10 159 407 73 307 2.84e-13 70.9
MS.gene009088.t1 MTR_4g067010 25.434 173 104 3 239 407 142 293 5.10e-13 70.1
MS.gene009088.t1 MTR_0250s0040 25.610 164 106 3 245 407 89 237 8.20e-13 68.6
MS.gene009088.t1 MTR_5g014600 26.190 168 111 3 246 407 151 311 1.36e-12 68.9
MS.gene009088.t1 MTR_0246s0020 25.309 162 111 4 246 407 200 351 5.59e-12 67.4
MS.gene009088.t1 MTR_5g030430 29.630 162 104 4 248 408 497 649 5.65e-12 68.2
MS.gene009088.t1 MTR_0246s0020 25.309 162 111 4 246 407 200 351 6.68e-12 67.0
MS.gene009088.t1 MTR_5g014520 23.445 209 138 4 207 407 112 306 9.68e-12 66.2
MS.gene009088.t1 MTR_8g067280 29.012 162 103 5 249 408 467 618 1.06e-11 67.4
MS.gene009088.t1 MTR_4g009540 22.684 313 207 10 96 407 29 307 3.44e-11 64.3
MS.gene009088.t1 MTR_4g009540 23.003 313 206 11 96 407 29 307 5.53e-11 63.9
MS.gene009088.t1 MTR_0011s0260 26.543 162 105 3 246 407 185 332 6.36e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009088.t1 AT1G10610 31.839 446 261 10 3 425 10 435 5.81e-67 220
MS.gene009088.t1 AT1G10610 30.238 420 250 10 29 425 6 405 4.38e-52 180
MS.gene009088.t1 AT2G16910 42.763 152 73 5 3 147 8 152 4.14e-36 140
MS.gene009088.t1 AT2G16910 37.186 199 110 4 242 428 312 507 7.94e-30 122
MS.gene009088.t1 AT1G10610 27.451 357 222 8 87 425 1 338 1.25e-32 126
MS.gene009088.t1 AT5G57150 31.667 180 114 3 243 420 53 225 2.31e-26 107
MS.gene009088.t1 AT5G57150 32.353 170 106 3 243 410 54 216 5.92e-26 105
MS.gene009088.t1 AT5G57150 33.133 166 106 3 243 408 53 213 6.53e-26 105
MS.gene009088.t1 AT5G57150 32.738 168 104 3 243 408 54 214 7.37e-26 104
MS.gene009088.t1 AT5G57150 33.133 166 106 3 243 408 54 214 1.31e-25 105
MS.gene009088.t1 AT4G29930 28.492 179 113 4 243 410 53 227 2.33e-19 87.8
MS.gene009088.t1 AT4G29930 28.492 179 113 4 243 410 53 227 2.33e-19 87.8
MS.gene009088.t1 AT4G29930 28.652 178 112 4 243 409 53 226 2.69e-19 87.4
MS.gene009088.t1 AT4G29930 27.545 167 102 2 243 409 53 200 5.38e-19 85.9
MS.gene009088.t1 AT4G29930 26.786 168 101 3 243 410 53 198 2.16e-18 84.3
MS.gene009088.t1 AT4G29930 26.946 167 100 3 243 409 53 197 2.23e-18 84.0
MS.gene009088.t1 AT2G28160 30.818 159 97 3 239 396 126 272 4.19e-18 85.1
MS.gene009088.t1 AT2G28160 30.818 159 97 3 239 396 126 272 4.45e-18 85.1
MS.gene009088.t1 AT1G12860 32.065 184 115 4 243 424 266 441 4.85e-18 86.3
MS.gene009088.t1 AT1G12860 34.337 166 101 3 243 408 266 423 2.18e-17 84.3
MS.gene009088.t1 AT3G26744 27.320 194 115 3 243 424 306 485 6.44e-16 80.1
MS.gene009088.t1 AT3G26744 27.320 194 115 3 243 424 306 485 6.44e-16 80.1
MS.gene009088.t1 AT3G26744 27.320 194 115 3 243 424 306 485 6.44e-16 80.1
MS.gene009088.t1 AT3G26744 28.409 176 102 2 243 408 306 467 2.43e-15 78.2
MS.gene009088.t1 AT4G29930 45.070 71 35 1 243 313 53 119 1.24e-14 72.4
MS.gene009088.t1 AT5G46760 28.111 217 117 6 229 424 387 585 1.77e-14 75.9
MS.gene009088.t1 AT4G21330 28.652 178 109 4 229 402 16 179 2.50e-14 72.0
MS.gene009088.t1 AT4G37850 28.111 217 115 7 204 414 128 309 1.13e-13 72.0
MS.gene009088.t1 AT4G37850 28.111 217 115 7 204 414 128 309 1.13e-13 72.0
MS.gene009088.t1 AT4G17880 31.138 167 84 7 248 408 420 561 1.68e-13 72.8
MS.gene009088.t1 AT5G41315 24.444 180 121 3 232 399 429 605 1.28e-12 70.1
MS.gene009088.t1 AT5G41315 24.444 180 121 3 232 399 434 610 1.39e-12 70.1
MS.gene009088.t1 AT5G41315 24.444 180 121 3 232 399 437 613 1.44e-12 70.1
MS.gene009088.t1 AT1G63650 26.744 172 111 4 236 399 400 564 3.87e-12 68.6
MS.gene009088.t1 AT1G63650 26.744 172 111 4 236 399 400 564 3.87e-12 68.6
MS.gene009088.t1 AT1G63650 26.744 172 111 4 236 399 400 564 3.87e-12 68.6
MS.gene009088.t1 AT1G32640 31.522 184 99 7 248 428 456 615 8.75e-12 67.4
MS.gene009088.t1 AT5G46830 26.667 180 114 5 248 426 347 509 5.11e-11 65.1

Find 71 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATATACCTTGGTTATATT+AGG 0.201515 8.1:-38671538 None:intergenic
TTACAGTGTCTCTTTATTCT+AGG 0.204070 8.1:+38670549 MS.gene009088:CDS
TATGTTGTTGTTTGGAAATA+TGG 0.204753 8.1:+38670149 MS.gene009088:CDS
TTCATGATATTTATATCTTC+TGG 0.214432 8.1:-38671136 None:intergenic
TCAACAAGACCGCCAATAAT+AGG 0.227144 8.1:-38670996 None:intergenic
CAAAGTTCTGAACATTATTA+TGG 0.236450 8.1:+38672266 MS.gene009088:CDS
ATCGGTGAGAGGTAGGTTTC+TGG 0.265091 8.1:-38671930 None:intergenic
TTCTGACTGGATGATGAAAA+AGG 0.289400 8.1:-38670493 None:intergenic
GATATACCTTGGTTATATTA+GGG 0.312920 8.1:-38671537 None:intergenic
GAATAAAGAGACACTGTAAA+AGG 0.342258 8.1:-38670545 None:intergenic
CTTGGGATTATGTTGTTGTT+TGG 0.348246 8.1:+38670141 MS.gene009088:CDS
ATGGAAGCAATAGATTCATT+TGG 0.358052 8.1:+38672204 MS.gene009088:CDS
TCATGATATTTATATCTTCT+GGG 0.361224 8.1:-38671135 None:intergenic
ATAATTTGTCTTCCATTTGT+AGG 0.364717 8.1:+38670465 MS.gene009088:CDS
TTGTAGGTTTATTGAGTGGT+TGG 0.389203 8.1:+38670379 MS.gene009088:intron
TTGCGTCTTTCTAGTGAAAT+CGG 0.394853 8.1:-38671969 None:intergenic
CAACAAGACCGCCAATAATA+GGG 0.398653 8.1:-38670995 None:intergenic
TATAAAGCAAGAAGCAATAT+CGG 0.417550 8.1:+38671186 MS.gene009088:CDS
ATATACTCTCTAAGTTTCTT+CGG 0.420467 8.1:-38673069 None:intergenic
GCAAACATGACAACATTTGA+TGG 0.420827 8.1:+38672243 MS.gene009088:CDS
ACCTCATGGATAAGCCATCT+TGG 0.422456 8.1:-38670856 None:intergenic
TGTAGGTTTATTGAGTGGTT+GGG 0.424285 8.1:+38670380 MS.gene009088:intron
GGATGCGATTGAATATATAA+TGG 0.425745 8.1:+38671790 MS.gene009088:CDS
ATCTTATCACAGAGAGGAAT+AGG 0.426459 8.1:+38671470 MS.gene009088:CDS
TCGAGTGTCAATTGTGGAAA+TGG 0.426586 8.1:+38671391 MS.gene009088:CDS
CTTTGTTGAGAGGAAAGCTT+GGG 0.443033 8.1:+38670124 MS.gene009088:CDS
TCTGAACATTATTATGGTTG+AGG 0.445865 8.1:+38672272 MS.gene009088:CDS
AATGATAAGTGCTCAGTTGA+AGG 0.446352 8.1:-38671271 None:intergenic
TGGTTGGGTTGTTGCTGTTG+TGG 0.457628 8.1:+38670395 MS.gene009088:CDS
TCACAAGTCTTTGTTCTGAC+TGG 0.460884 8.1:-38670506 None:intergenic
TAATTTGTCTTCCATTTGTA+GGG 0.462306 8.1:+38670466 MS.gene009088:CDS
AGAGAAAGAATTTCAAGAAA+AGG 0.468091 8.1:+38671826 MS.gene009088:CDS
AGATAAAGAAAATATTGTTA+AGG 0.491618 8.1:+38671417 MS.gene009088:CDS
TTGGGTTGTTGCTGTTGTGG+TGG 0.496316 8.1:+38670398 MS.gene009088:CDS
CCTTTGTTGAGAGGAAAGCT+TGG 0.499952 8.1:+38670123 MS.gene009088:CDS
TGAGAAGGTGAAGTTGAAAG+AGG 0.517970 8.1:+38670427 MS.gene009088:CDS
TGTCCCACAGGCAACTGCGC+AGG 0.521275 8.1:+38673038 MS.gene009088:intron
TTCTTAGACCCTTTGTTGAG+AGG 0.521603 8.1:+38670114 MS.gene009088:CDS
TTTCACTAGAAAGACGCAAA+TGG 0.523736 8.1:+38671973 MS.gene009088:CDS
CAAGCTTTCCTCTCAACAAA+GGG 0.525491 8.1:-38670122 None:intergenic
GGTCAAGGCTTTAGAAGTTG+AGG 0.529656 8.1:+38671847 MS.gene009088:CDS
AGACACTGTAAAAGGAAGCT+TGG 0.535351 8.1:-38670537 None:intergenic
CTTTAGAAGTTGAGGACTGT+GGG 0.546640 8.1:+38671855 MS.gene009088:CDS
CCAAGCTTTCCTCTCAACAA+AGG 0.551769 8.1:-38670123 None:intergenic
GGACGAACTTTGATTAAGAT+CGG 0.554545 8.1:-38671948 None:intergenic
GATTAAGATCGGTGAGAGGT+AGG 0.559917 8.1:-38671937 None:intergenic
GCATGATACACTTTCTCTTG+AGG 0.560146 8.1:-38671442 None:intergenic
GCTAAAATTGAAGTTCATGT+TGG 0.562915 8.1:-38671221 None:intergenic
TTATCATTTGATTCAAACGA+TGG 0.566969 8.1:+38671286 MS.gene009088:CDS
AGTATATGATGCAGCAAACA+AGG 0.569068 8.1:+38673085 MS.gene009088:CDS
AAAGACAAAGAGCTTGGAGA+AGG 0.576282 8.1:+38671905 MS.gene009088:CDS
AGAATTTCAAGAAAAGGTCA+AGG 0.584855 8.1:+38671832 MS.gene009088:CDS
GTGATATTGCTACCTCTGCA+TGG 0.587930 8.1:-38670828 None:intergenic
CAATATCACAACAACCAAGA+TGG 0.588239 8.1:+38670842 MS.gene009088:CDS
GTAGAAGTGAATCATATCAC+CGG 0.592424 8.1:+38672123 MS.gene009088:CDS
GCTTTAGAAGTTGAGGACTG+TGG 0.603990 8.1:+38671854 MS.gene009088:CDS
TGTAGTTCGAGTGTCAATTG+TGG 0.604436 8.1:+38671385 MS.gene009088:CDS
GGTTGATTCAAATATTCAAG+CGG 0.621147 8.1:-38671319 None:intergenic
AATATATAATGGAATTGCAG+AGG 0.626528 8.1:+38671801 MS.gene009088:CDS
GGACAGAGTAGCAATTCTTG+AGG 0.640821 8.1:+38671769 MS.gene009088:CDS
GATCTACAGTGTCCATGCAG+AGG 0.648208 8.1:+38670816 MS.gene009088:intron
CACTAGAAAGACGCAAATGG+AGG 0.648901 8.1:+38671976 MS.gene009088:CDS
AGGAGAAACAGAATAAAACA+AGG 0.649066 8.1:+38671490 MS.gene009088:CDS
TCTAGTCCCTAATATAACCA+AGG 0.659673 8.1:+38671531 MS.gene009088:CDS
ACCAAGATGGCTTATCCATG+AGG 0.659718 8.1:+38670855 MS.gene009088:CDS
GGAGAAACAGAATAAAACAA+GGG 0.669280 8.1:+38671491 MS.gene009088:CDS
CTTTGATTAAGATCGGTGAG+AGG 0.675164 8.1:-38671941 None:intergenic
TTGTGGTGGAAATATTGAGA+AGG 0.686408 8.1:+38670412 MS.gene009088:CDS
TTGTGCTGTGAGCAGAAGCA+AGG 0.689984 8.1:+38672165 MS.gene009088:CDS
AGTCAGAACAAAGACTTGTG+AGG 0.691527 8.1:+38670508 MS.gene009088:CDS
AATATGGAAATGATCCAACA+AGG 0.709023 8.1:+38670165 MS.gene009088:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGATTAAACATAAAAAAA+TGG - chr8.1:38670769-38670788 None:intergenic 10.0%
!! AAAATTAGATATTTCATTCA+TGG + chr8.1:38672894-38672913 MS.gene009088:intron 15.0%
!! AGATAAAGAAAATATTGTTA+AGG + chr8.1:38671417-38671436 MS.gene009088:CDS 15.0%
!!! TAATTTTTCAAAATTGTCTA+CGG - chr8.1:38672881-38672900 None:intergenic 15.0%
!! AAATCTTAGCACTTATTTAT+TGG + chr8.1:38671047-38671066 MS.gene009088:intron 20.0%
!! AAATTTCAATTAAGATAGTG+AGG - chr8.1:38672688-38672707 None:intergenic 20.0%
!! AATTTCAATTAAGATAGTGA+GGG - chr8.1:38672687-38672706 None:intergenic 20.0%
!! ACAAAAATTAATTTACCTCA+TGG - chr8.1:38670873-38670892 None:intergenic 20.0%
!! ATTGAGTATTTAAATTAGAC+AGG + chr8.1:38672426-38672445 MS.gene009088:intron 20.0%
!! TAAACAATTTAGATATACCT+TGG - chr8.1:38671551-38671570 None:intergenic 20.0%
!! TATTTATGCACTTAACTATT+AGG - chr8.1:38672311-38672330 None:intergenic 20.0%
!! TCATGATATTTATATCTTCT+GGG - chr8.1:38671138-38671157 None:intergenic 20.0%
!! TCTAATTTAAATACTCAATC+TGG - chr8.1:38672425-38672444 None:intergenic 20.0%
!! TGTTTAATCATTGAAATGAA+AGG + chr8.1:38670777-38670796 MS.gene009088:intron 20.0%
!! TTACTAATGAATAACAAGAT+AGG - chr8.1:38670200-38670219 None:intergenic 20.0%
!! TTCAATATAATTATGTGTGT+CGG - chr8.1:38670668-38670687 None:intergenic 20.0%
!! TTCATGATATTTATATCTTC+TGG - chr8.1:38671139-38671158 None:intergenic 20.0%
!!! AATTTTATTGCTTCTTTTCT+TGG + chr8.1:38672062-38672081 MS.gene009088:intron 20.0%
!!! TATATTCAATTTGAAGTGTT+CGG - chr8.1:38672785-38672804 None:intergenic 20.0%
!!! TCATTTTCTCAAGTTATTAT+TGG + chr8.1:38670266-38670285 MS.gene009088:intron 20.0%
! AACCTACAAAAGAGAAATAT+TGG - chr8.1:38670368-38670387 None:intergenic 25.0%
! AATGAAGCATAAATACTCTT+CGG + chr8.1:38670598-38670617 MS.gene009088:intron 25.0%
! AGAGAAAGAATTTCAAGAAA+AGG + chr8.1:38671826-38671845 MS.gene009088:CDS 25.0%
! AGATATACCTTGGTTATATT+AGG - chr8.1:38671541-38671560 None:intergenic 25.0%
! ATATACTCTCTAAGTTTCTT+CGG - chr8.1:38673072-38673091 None:intergenic 25.0%
! CCAAAAACGCAATAAAATTT+CGG + chr8.1:38671351-38671370 MS.gene009088:CDS 25.0%
! GATATACCTTGGTTATATTA+GGG - chr8.1:38671540-38671559 None:intergenic 25.0%
! TAACCTCATTACAATAGAAA+GGG - chr8.1:38673013-38673032 None:intergenic 25.0%
! TATAAAGCAAGAAGCAATAT+CGG + chr8.1:38671186-38671205 MS.gene009088:CDS 25.0%
! TGTAACCATATTTAAAGACT+AGG + chr8.1:38672925-38672944 MS.gene009088:intron 25.0%
! TTAACCTCATTACAATAGAA+AGG - chr8.1:38673014-38673033 None:intergenic 25.0%
! TTATCATTTGATTCAAACGA+TGG + chr8.1:38671286-38671305 MS.gene009088:CDS 25.0%
! TTGAAGCTTCAACAAAATTA+CGG + chr8.1:38671670-38671689 MS.gene009088:intron 25.0%
!! AATATATAATGGAATTGCAG+AGG + chr8.1:38671801-38671820 MS.gene009088:CDS 25.0%
!! ATAATTTGTCTTCCATTTGT+AGG + chr8.1:38670465-38670484 MS.gene009088:CDS 25.0%
!! ATCCAATATTTCTCTTTTGT+AGG + chr8.1:38670363-38670382 MS.gene009088:intron 25.0%
!! CTTAATCATGAAATCTTTTC+CGG - chr8.1:38672145-38672164 None:intergenic 25.0%
!! GAGGTAAATTAATTTTTGTG+TGG + chr8.1:38670874-38670893 MS.gene009088:intron 25.0%
!! GGAATGTAAAAAGTATGATT+TGG - chr8.1:38672404-38672423 None:intergenic 25.0%
!! TAATTTGTCTTCCATTTGTA+GGG + chr8.1:38670466-38670485 MS.gene009088:CDS 25.0%
!!! CAAAGTTCTGAACATTATTA+TGG + chr8.1:38672266-38672285 MS.gene009088:CDS 25.0%
!!! CAAGTTTTAATCCCTATTAT+TGG + chr8.1:38670984-38671003 MS.gene009088:CDS 25.0%
!!! GTCGTTTTATATTTATCAGT+TGG + chr8.1:38672738-38672757 MS.gene009088:intron 25.0%
!!! TAAAAAGTATGATTTGGTGT+GGG - chr8.1:38672398-38672417 None:intergenic 25.0%
!!! TATGTTGTTGTTTGGAAATA+TGG + chr8.1:38670149-38670168 MS.gene009088:CDS 25.0%
!!! TTAACTGTTAATGTTTTGAC+AGG + chr8.1:38670947-38670966 MS.gene009088:intron 25.0%
AACATAGCCTAATCATTCTT+TGG - chr8.1:38672473-38672492 None:intergenic 30.0%
AAGAATGATTAGGCTATGTT+TGG + chr8.1:38672473-38672492 MS.gene009088:intron 30.0%
AATATAATTATGTGTGTCGG+TGG - chr8.1:38670665-38670684 None:intergenic 30.0%
AATATGGAAATGATCCAACA+AGG + chr8.1:38670165-38670184 MS.gene009088:CDS 30.0%
ACATTATTATGGTTGAGGTA+AGG + chr8.1:38672277-38672296 MS.gene009088:intron 30.0%
AGAATTTCAAGAAAAGGTCA+AGG + chr8.1:38671832-38671851 MS.gene009088:CDS 30.0%
AGGAGAAACAGAATAAAACA+AGG + chr8.1:38671490-38671509 MS.gene009088:CDS 30.0%
ATGGAAGCAATAGATTCATT+TGG + chr8.1:38672204-38672223 MS.gene009088:CDS 30.0%
CATTATTATGGTTGAGGTAA+GGG + chr8.1:38672278-38672297 MS.gene009088:intron 30.0%
CTAAAAATCTTATCACAGAG+AGG + chr8.1:38671464-38671483 MS.gene009088:CDS 30.0%
GAATAAAGAGACACTGTAAA+AGG - chr8.1:38670548-38670567 None:intergenic 30.0%
GCTAAAATTGAAGTTCATGT+TGG - chr8.1:38671224-38671243 None:intergenic 30.0%
GGAGAAACAGAATAAAACAA+GGG + chr8.1:38671491-38671510 MS.gene009088:CDS 30.0%
GGATGCGATTGAATATATAA+TGG + chr8.1:38671790-38671809 MS.gene009088:CDS 30.0%
TAACTTGAGAAAATGACATC+AGG - chr8.1:38670262-38670281 None:intergenic 30.0%
TATGAAACACATATACTCCT+CGG + chr8.1:38670225-38670244 MS.gene009088:intron 30.0%
TCTGAACATTATTATGGTTG+AGG + chr8.1:38672272-38672291 MS.gene009088:CDS 30.0%
TGAAAAATCATGAGCTAGTT+TGG + chr8.1:38672352-38672371 MS.gene009088:intron 30.0%
TGAGTTTGCCATAATTACAT+TGG + chr8.1:38671618-38671637 MS.gene009088:intron 30.0%
TTACAGTGTCTCTTTATTCT+AGG + chr8.1:38670549-38670568 MS.gene009088:CDS 30.0%
TTTGAGCTTATAGCTTACAT+CGG + chr8.1:38672651-38672670 MS.gene009088:intron 30.0%
! AACTAGCTCATGATTTTTCA+TGG - chr8.1:38672352-38672371 None:intergenic 30.0%
! ATCGACCTAGTCTTTAAATA+TGG - chr8.1:38672933-38672952 None:intergenic 30.0%
! CCGAAATTTTATTGCGTTTT+TGG - chr8.1:38671354-38671373 None:intergenic 30.0%
! GATGTTCTTTTACTATGTCA+TGG + chr8.1:38672027-38672046 MS.gene009088:intron 30.0%
! GGTTGATTCAAATATTCAAG+CGG - chr8.1:38671322-38671341 None:intergenic 30.0%
! TATAACTTTTACCGAAATCG+TGG - chr8.1:38671648-38671667 None:intergenic 30.0%
! TCTTTTGTAGGTTTATTGAG+TGG + chr8.1:38670375-38670394 MS.gene009088:intron 30.0%
!! AACTTCAATTTTAGCATGGA+AGG + chr8.1:38671229-38671248 MS.gene009088:CDS 30.0%
!! CATGAACTTCAATTTTAGCA+TGG + chr8.1:38671225-38671244 MS.gene009088:CDS 30.0%
!! GTAAAAAGTATGATTTGGTG+TGG - chr8.1:38672399-38672418 None:intergenic 30.0%
!! GTTTTAATCCCTATTATTGG+CGG + chr8.1:38670987-38671006 MS.gene009088:CDS 30.0%
!!! ATAGGTTTTTAGTACCTTGT+TGG - chr8.1:38670182-38670201 None:intergenic 30.0%
AAGGGCAACTTATGAACTTA+CGG - chr8.1:38672995-38673014 None:intergenic 35.0%
AATGATAAGTGCTCAGTTGA+AGG - chr8.1:38671274-38671293 None:intergenic 35.0%
AGCTCAAATACTACTTGAAG+TGG - chr8.1:38672639-38672658 None:intergenic 35.0%
AGTATATGATGCAGCAAACA+AGG + chr8.1:38673085-38673104 MS.gene009088:CDS 35.0%
ATAGAGAATCAATGCTCTCA+GGG - chr8.1:38672967-38672986 None:intergenic 35.0%
ATCTTATCACAGAGAGGAAT+AGG + chr8.1:38671470-38671489 MS.gene009088:CDS 35.0%
ATGAAGTATAGACTCAGACA+CGG - chr8.1:38670730-38670749 None:intergenic 35.0%
CAATATCACAACAACCAAGA+TGG + chr8.1:38670842-38670861 MS.gene009088:CDS 35.0%
CTTCCTTCCAAAGAATGATT+AGG + chr8.1:38672463-38672482 MS.gene009088:intron 35.0%
GACGAGATTATAGTAGAAAG+TGG - chr8.1:38672816-38672835 None:intergenic 35.0%
GCAAACATGACAACATTTGA+TGG + chr8.1:38672243-38672262 MS.gene009088:CDS 35.0%
GCATAAATACTCTTCGGATT+AGG + chr8.1:38670604-38670623 MS.gene009088:intron 35.0%
GGACGAACTTTGATTAAGAT+CGG - chr8.1:38671951-38671970 None:intergenic 35.0%
GTAGAAGTGAATCATATCAC+CGG + chr8.1:38672123-38672142 MS.gene009088:CDS 35.0%
GTTCAAAAAGACAAAGAGCT+TGG + chr8.1:38671899-38671918 MS.gene009088:CDS 35.0%
TAGCCTAATCATTCTTTGGA+AGG - chr8.1:38672469-38672488 None:intergenic 35.0%
TCTAGTCCCTAATATAACCA+AGG + chr8.1:38671531-38671550 MS.gene009088:CDS 35.0%
TCTGACTGGATGATGAAAAA+GGG - chr8.1:38670495-38670514 None:intergenic 35.0%
TGTAGGTTTATTGAGTGGTT+GGG + chr8.1:38670380-38670399 MS.gene009088:intron 35.0%
TTCTGACTGGATGATGAAAA+AGG - chr8.1:38670496-38670515 None:intergenic 35.0%
TTGCCCTTTCTATTGTAATG+AGG + chr8.1:38673007-38673026 MS.gene009088:intron 35.0%
TTGTAGGTTTATTGAGTGGT+TGG + chr8.1:38670379-38670398 MS.gene009088:intron 35.0%
TTTCACTAGAAAGACGCAAA+TGG + chr8.1:38671973-38671992 MS.gene009088:CDS 35.0%
! AACAAGGGCTTTTTACTCTA+AGG + chr8.1:38671506-38671525 MS.gene009088:CDS 35.0%
! CTTGGGATTATGTTGTTGTT+TGG + chr8.1:38670141-38670160 MS.gene009088:CDS 35.0%
! GTGTCTAATCCTCTCAATTT+TGG + chr8.1:38671741-38671760 MS.gene009088:intron 35.0%
! TTGCGTCTTTCTAGTGAAAT+CGG - chr8.1:38671972-38671991 None:intergenic 35.0%
! TTGTGGTGGAAATATTGAGA+AGG + chr8.1:38670412-38670431 MS.gene009088:CDS 35.0%
!! AAAAAGGGTATCCCTACAAA+TGG - chr8.1:38670480-38670499 None:intergenic 35.0%
!! TCAAGTTATTATTGGTGTCG+AGG + chr8.1:38670274-38670293 MS.gene009088:intron 35.0%
!!! GAGCTAGTTTGGTTTTATCT+TGG + chr8.1:38672363-38672382 MS.gene009088:intron 35.0%
!!! TTGCGTTTTTGGCTTTTAAG+TGG - chr8.1:38671343-38671362 None:intergenic 35.0%
AAAGACAAAGAGCTTGGAGA+AGG + chr8.1:38671905-38671924 MS.gene009088:CDS 40.0%
AAATTGTCTACGGCTCTGTT+TGG - chr8.1:38672871-38672890 None:intergenic 40.0%
AGACACTGTAAAAGGAAGCT+TGG - chr8.1:38670540-38670559 None:intergenic 40.0%
AGGGCAACTTATGAACTTAC+GGG - chr8.1:38672994-38673013 None:intergenic 40.0%
AGTCAGAACAAAGACTTGTG+AGG + chr8.1:38670508-38670527 MS.gene009088:CDS 40.0%
CAACAAGACCGCCAATAATA+GGG - chr8.1:38670998-38671017 None:intergenic 40.0%
CAACTTATGAACTTACGGGT+GGG - chr8.1:38672990-38673009 None:intergenic 40.0%
CAAGCTTTCCTCTCAACAAA+GGG - chr8.1:38670125-38670144 None:intergenic 40.0%
CTATGTTTGGCAAGACAAAC+CGG + chr8.1:38672486-38672505 MS.gene009088:intron 40.0%
CTTTGATTAAGATCGGTGAG+AGG - chr8.1:38671944-38671963 None:intergenic 40.0%
CTTTGTTGAGAGGAAAGCTT+GGG + chr8.1:38670124-38670143 MS.gene009088:CDS 40.0%
GATAGAGAATCAATGCTCTC+AGG - chr8.1:38672968-38672987 None:intergenic 40.0%
GCATGATACACTTTCTCTTG+AGG - chr8.1:38671445-38671464 None:intergenic 40.0%
GTGGTGGTCCAATGTAATTA+TGG - chr8.1:38671629-38671648 None:intergenic 40.0%
TCAACAAGACCGCCAATAAT+AGG - chr8.1:38670999-38671018 None:intergenic 40.0%
TCACAAGTCTTTGTTCTGAC+TGG - chr8.1:38670509-38670528 None:intergenic 40.0%
TCGAGTGTCAATTGTGGAAA+TGG + chr8.1:38671391-38671410 MS.gene009088:CDS 40.0%
TGAGAAGGTGAAGTTGAAAG+AGG + chr8.1:38670427-38670446 MS.gene009088:CDS 40.0%
TGTAGTTCGAGTGTCAATTG+TGG + chr8.1:38671385-38671404 MS.gene009088:CDS 40.0%
TTCTTAGACCCTTTGTTGAG+AGG + chr8.1:38670114-38670133 MS.gene009088:CDS 40.0%
! AACTTTTACCGAAATCGTGG+TGG - chr8.1:38671645-38671664 None:intergenic 40.0%
! AGAAGCAAGGTGTGTTTTCA+AGG + chr8.1:38672178-38672197 MS.gene009088:CDS 40.0%
! CCTATTTGTTACAAGCTAGC+CGG - chr8.1:38672508-38672527 None:intergenic 40.0%
! CTTTAGAAGTTGAGGACTGT+GGG + chr8.1:38671855-38671874 MS.gene009088:CDS 40.0%
! CTTTGGAAGGAAGTTACAAG+TGG - chr8.1:38672456-38672475 None:intergenic 40.0%
! GAGGTTAAATTTTGTCCCAC+AGG + chr8.1:38673026-38673045 MS.gene009088:intron 40.0%
!! AGGTGTGTTTTCAAGGTTGA+TGG + chr8.1:38672185-38672204 MS.gene009088:CDS 40.0%
!! ATCCTCTCAATTTTGGCAGA+TGG + chr8.1:38671748-38671767 MS.gene009088:intron 40.0%
!!! ATGTTTTGACAGGACTCAGT+TGG + chr8.1:38670957-38670976 MS.gene009088:intron 40.0%
ACAGACACTAGACACGGATA+TGG - chr8.1:38670303-38670322 None:intergenic 45.0%
ACATTGGACCACCACGATTT+CGG + chr8.1:38671634-38671653 MS.gene009088:intron 45.0%
ACCAAGATGGCTTATCCATG+AGG + chr8.1:38670855-38670874 MS.gene009088:CDS 45.0%
ACCTCATGGATAAGCCATCT+TGG - chr8.1:38670859-38670878 None:intergenic 45.0%
ATATCCGTGTCTAGTGTCTG+TGG + chr8.1:38670302-38670321 MS.gene009088:intron 45.0%
ATCAGGACACATCTAATCCG+AGG - chr8.1:38670245-38670264 None:intergenic 45.0%
CACTAGAAAGACGCAAATGG+AGG + chr8.1:38671976-38671995 MS.gene009088:CDS 45.0%
CCAAGCTTTCCTCTCAACAA+AGG - chr8.1:38670126-38670145 None:intergenic 45.0%
CCTTTGTTGAGAGGAAAGCT+TGG + chr8.1:38670123-38670142 MS.gene009088:CDS 45.0%
GATTAAGATCGGTGAGAGGT+AGG - chr8.1:38671940-38671959 None:intergenic 45.0%
GATTAGGCGTGCAACAATGT+CGG + chr8.1:38670620-38670639 MS.gene009088:intron 45.0%
GCAACTTATGAACTTACGGG+TGG - chr8.1:38672991-38673010 None:intergenic 45.0%
GGACAGAGTAGCAATTCTTG+AGG + chr8.1:38671769-38671788 MS.gene009088:CDS 45.0%
GTCCATCTGCCAAAATTGAG+AGG - chr8.1:38671753-38671772 None:intergenic 45.0%
GTGATATTGCTACCTCTGCA+TGG - chr8.1:38670831-38670850 None:intergenic 45.0%
! ATTATGTGTGTCGGTGGTGT+CGG - chr8.1:38670659-38670678 None:intergenic 45.0%
!! CCGGCTAGCTTGTAACAAAT+AGG + chr8.1:38672505-38672524 MS.gene009088:intron 45.0%
!! GCTTTAGAAGTTGAGGACTG+TGG + chr8.1:38671854-38671873 MS.gene009088:CDS 45.0%
!! GGTCAAGGCTTTAGAAGTTG+AGG + chr8.1:38671847-38671866 MS.gene009088:CDS 45.0%
!! AAATATTAAAAGATTATATT+AGG - chr8.1:38672091-38672110 None:intergenic 5.0%
ATCGGTGAGAGGTAGGTTTC+TGG - chr8.1:38671933-38671952 None:intergenic 50.0%
GACACCACAGACACTAGACA+CGG - chr8.1:38670309-38670328 None:intergenic 50.0%
GATCTACAGTGTCCATGCAG+AGG + chr8.1:38670816-38670835 MS.gene009088:intron 50.0%
TTGTGCTGTGAGCAGAAGCA+AGG + chr8.1:38672165-38672184 MS.gene009088:CDS 50.0%
! TGGTTGGGTTGTTGCTGTTG+TGG + chr8.1:38670395-38670414 MS.gene009088:CDS 50.0%
! TTGGGTTGTTGCTGTTGTGG+TGG + chr8.1:38670398-38670417 MS.gene009088:CDS 50.0%
ATATCCTGCGCAGTTGCCTG+TGG - chr8.1:38673045-38673064 None:intergenic 55.0%
TATCCTGCGCAGTTGCCTGT+GGG - chr8.1:38673044-38673063 None:intergenic 55.0%
TGTCTGAGTCTGTGCTGCAC+AGG + chr8.1:38670325-38670344 MS.gene009088:intron 55.0%
TGTCCCACAGGCAACTGCGC+AGG + chr8.1:38673038-38673057 MS.gene009088:intron 65.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 38670098 38673110 38670098 ID=MS.gene009088
chr8.1 mRNA 38670098 38673110 38670098 ID=MS.gene009088.t1;Parent=MS.gene009088
chr8.1 exon 38670098 38670186 38670098 ID=MS.gene009088.t1.exon1;Parent=MS.gene009088.t1
chr8.1 CDS 38670098 38670186 38670098 ID=cds.MS.gene009088.t1;Parent=MS.gene009088.t1
chr8.1 exon 38670385 38670570 38670385 ID=MS.gene009088.t1.exon2;Parent=MS.gene009088.t1
chr8.1 CDS 38670385 38670570 38670385 ID=cds.MS.gene009088.t1;Parent=MS.gene009088.t1
chr8.1 exon 38670825 38670876 38670825 ID=MS.gene009088.t1.exon3;Parent=MS.gene009088.t1
chr8.1 CDS 38670825 38670876 38670825 ID=cds.MS.gene009088.t1;Parent=MS.gene009088.t1
chr8.1 exon 38670969 38671037 38670969 ID=MS.gene009088.t1.exon4;Parent=MS.gene009088.t1
chr8.1 CDS 38670969 38671037 38670969 ID=cds.MS.gene009088.t1;Parent=MS.gene009088.t1
chr8.1 exon 38671133 38671552 38671133 ID=MS.gene009088.t1.exon5;Parent=MS.gene009088.t1
chr8.1 CDS 38671133 38671552 38671133 ID=cds.MS.gene009088.t1;Parent=MS.gene009088.t1
chr8.1 exon 38671767 38671997 38671767 ID=MS.gene009088.t1.exon6;Parent=MS.gene009088.t1
chr8.1 CDS 38671767 38671997 38671767 ID=cds.MS.gene009088.t1;Parent=MS.gene009088.t1
chr8.1 exon 38672117 38672293 38672117 ID=MS.gene009088.t1.exon7;Parent=MS.gene009088.t1
chr8.1 CDS 38672117 38672293 38672117 ID=cds.MS.gene009088.t1;Parent=MS.gene009088.t1
chr8.1 exon 38673048 38673110 38673048 ID=MS.gene009088.t1.exon8;Parent=MS.gene009088.t1
chr8.1 CDS 38673048 38673110 38673048 ID=cds.MS.gene009088.t1;Parent=MS.gene009088.t1
Gene Sequence

>MS.gene009088

ATGGGCGTTGTTGAATTTCTTAGACCCTTTGTTGAGAGGAAAGCTTGGGATTATGTTGTTGTTTGGAAATATGGAAATGATCCAACAAGGTACTAAAAACCTATCTTGTTATTCATTAGTAAATTGCTATGAAACACATATACTCCTCGGATTAGATGTGTCCTGATGTCATTTTCTCAAGTTATTATTGGTGTCGAGGTGTCCATATCCGTGTCTAGTGTCTGTGGTGTCTGAGTCTGTGCTGCACAGGTAAATTGTCTTTTTGATCCAATATTTCTCTTTTGTAGGTTTATTGAGTGGTTGGGTTGTTGCTGTTGTGGTGGAAATATTGAGAAGGTGAAGTTGAAAGAGGAAACTTGTGAAGAAAATAATTTGTCTTCCATTTGTAGGGATACCCTTTTTCATCATCCAGTCAGAACAAAGACTTGTGAGGCTCTTGCCAAGCTTCCTTTTACAGTGTCTCTTTATTCTAGGTCTCTCACTTTCTCTTCTCTCTTTATAATGAAGCATAAATACTCTTCGGATTAGGCGTGCAACAATGTCGGATATGTATCGTGTCCGACACCACCGACACACATAATTATATTGAATTATGTCATTTTTTCAAATTATTATGTGTATTAACGTGTCCGTGTCTGAGTCTATACTTCATGAATCGCATTAAATATCCATTTTTTTATGTTTAATCATTGAAATGAAAGGCTAAAGAGAAGTATTTGATCTACAGTGTCCATGCAGAGGTAGCAATATCACAACAACCAAGATGGCTTATCCATGAGGTAAATTAATTTTTGTGTGGAAATCAGCTTAATTAAGAACTTATATCATAAGTGTTTATCATATTGATTTTTAACTGTTAATGTTTTGACAGGACTCAGTTGGAACTCAAGTTTTAATCCCTATTATTGGCGGTCTTGTTGAGCTTTTCACTGCAAAGCATGTAAGATACAAATCTTAGCACTTATTTATTGGCATTATCTTCTGTTCTAAAATGATTGTGAATTTTCAAATTAATCAAGTGTTTATCTTTCTCAGATCCCAGAAGATATAAATATCATGAAGTTCATCTCAGCACACTGTTGTGTCTCTATAAAGCAAGAAGCAATATCGGCACATAGCTACGCCAACATGAACTTCAATTTTAGCATGGAAGGACACTTCAGTGAATCTAATCCTTCAACTGAGCACTTATCATTTGATTCAAACGATGGTTGCTTGATTCCGCTTGAATATTTGAATCAACCACTTAAAAGCCAAAAACGCAATAAAATTTCGGTGAAACGTCAGTGTAGTTCGAGTGTCAATTGTGGAAATGGCGAAGATAAAGAAAATATTGTTAAGGAGCCTCAAGAGAAAGTGTATCATGCTAAAAATCTTATCACAGAGAGGAATAGGAGAAACAGAATAAAACAAGGGCTTTTTACTCTAAGGTCTCTAGTCCCTAATATAACCAAGGTATATCTAAATTGTTTAACTCAATAGCATGAATGTAATACTTTTCGCTATTAATTTTGCACAAGTGAGTTTGCCATAATTACATTGGACCACCACGATTTCGGTAAAAGTTATACTTTGAAGCTTCAACAAAATTACGGTGTCAGCTTTATATCGTCAAATTGACTATTGATCTGAACATGCACTATGTGTCTAATCCTCTCAATTTTGGCAGATGGACAGAGTAGCAATTCTTGAGGATGCGATTGAATATATAATGGAATTGCAGAGGCAAGAGAAAGAATTTCAAGAAAAGGTCAAGGCTTTAGAAGTTGAGGACTGTGGGAAGAGCACACTACAAATAAGAGTTCAAAAAGACAAAGAGCTTGGAGAAGGAACCAGAAACCTACCTCTCACCGATCTTAATCAAAGTTCGTCCGATTTCACTAGAAAGACGCAAATGGAGGTACATAAAATGTGCATAATAACAGTTTCGATGTTCTTTTACTATGTCATGGATAATGAAACTGAATTTTATTGCTTCTTTTCTTGGACACCTAATATAATCTTTTAATATTTTCTTAGTTGCAAGTAGAAGTGAATCATATCACCGGAAAAGATTTCATGATTAAGTTGTGCTGTGAGCAGAAGCAAGGTGTGTTTTCAAGGTTGATGGAAGCAATAGATTCATTTGGACTGCATGTGTTAAGTGCAAACATGACAACATTTGATGGCAAAGTTCTGAACATTATTATGGTTGAGGTAAGGGTCTAAATCCTAATAGTTAAGTGCATAAATATACTATAAATAAGAATCACCATGAAAAATCATGAGCTAGTTTGGTTTTATCTTGGTTCTAAAATCCCACACCAAATCATACTTTTTACATTCCAGATTGAGTATTTAAATTAGACAGGAAATCCACTTGTAACTTCCTTCCAAAGAATGATTAGGCTATGTTTGGCAAGACAAACCGGCTAGCTTGTAACAAATAGGTTATAGAATATGAGTTCGTATGATCAAAATAGAGCTATTTTTGTAACAGTCTTTCTTTACGATCTTAAAGTGCTTTCTTTTCTCAAGCTTATAACATTATTTGAGATGCCACTTCAAGTAGTATTTGAGCTTATAGCTTACATCGGATCATTTTTACCCTCACTATCTTAATTGAAATTTTTTAAATATTAATTAGAAATATATTCTTAAGTCGTTTTATATTTATCAGTTGGTTCAATGACTAATTTAATTAACCGAACACTTCAAATTGAATATATAGCTTATCCACTTTCTACTATAATCTCGTCTATTATCAACAAGCTTGTCTTCTACTTTTTTACCAAACAGAGCCGTAGACAATTTTGAAAAATTAGATATTTCATTCATGGAAACTAAATGTAACCATATTTAAAGACTAGGTCGATCAAAACTATCACCCTGAGAGCATTGATTCTCTATCCCACCCGTAAGTTCATAAGTTGCCCTTTCTATTGTAATGAGGTTAAATTTTGTCCCACAGGCAACTGCGCAGGATATTCAGCCGAAGAAACTTAGAGAGTATATGATGCAGCAAACAAGGTAA

Protein sequence

>MS.gene009088.t1

MGVVEFLRPFVERKAWDYVVVWKYGNDPTRFIEWLGCCCCGGNIEKVKLKEETCEENNLSSICRDTLFHHPVRTKTCEALAKLPFTVSLYSSVHAEVAISQQPRWLIHEDSVGTQVLIPIIGGLVELFTAKHIPEDINIMKFISAHCCVSIKQEAISAHSYANMNFNFSMEGHFSESNPSTEHLSFDSNDGCLIPLEYLNQPLKSQKRNKISVKRQCSSSVNCGNGEDKENIVKEPQEKVYHAKNLITERNRRNRIKQGLFTLRSLVPNITKMDRVAILEDAIEYIMELQRQEKEFQEKVKALEVEDCGKSTLQIRVQKDKELGEGTRNLPLTDLNQSSSDFTRKTQMELQVEVNHITGKDFMIKLCCEQKQGVFSRLMEAIDSFGLHVLSANMTTFDGKVLNIIMVEATAQDIQPKKLREYMMQQTR