AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene009128

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009128.t1 MTR_8g063870 58.424 368 51 8 1 362 1 272 2.77e-132 379
MS.gene009128.t1 MTR_8g063600 61.871 278 70 4 1 265 1 255 3.43e-102 303
MS.gene009128.t1 MTR_8g063600 54.082 98 37 2 265 362 200 289 3.86e-21 92.4
MS.gene009128.t1 MTR_1g111830 51.124 178 62 3 10 170 23 192 3.46e-46 158
MS.gene009128.t1 MTR_4g111975 36.697 327 110 14 11 274 8 300 4.66e-45 157
MS.gene009128.t1 MTR_5g081860 40.724 221 114 4 10 219 26 240 9.82e-42 147
MS.gene009128.t1 MTR_3g462790 46.703 182 74 5 6 169 38 214 1.82e-41 148
MS.gene009128.t1 MTR_5g069710 43.229 192 91 5 11 187 29 217 2.15e-41 147
MS.gene009128.t1 MTR_7g067080 46.111 180 77 5 10 172 34 210 3.85e-39 141
MS.gene009128.t1 MTR_1g033600 49.265 136 46 4 1 114 3 137 1.93e-30 113
MS.gene009128.t1 MTR_5g075760 43.558 163 85 6 7 164 9 169 1.11e-29 114
MS.gene009128.t1 MTR_5g075790 41.358 162 89 5 7 164 18 177 3.20e-28 110
MS.gene009128.t1 MTR_1g033620 48.193 166 42 7 115 269 20 152 6.28e-28 110
MS.gene009128.t1 MTR_5g088010 59.155 71 28 1 99 168 59 129 3.24e-22 94.7
MS.gene009128.t1 MTR_5g088060 37.952 166 86 5 5 168 191 341 1.51e-21 95.9
MS.gene009128.t1 MTR_5g488160 37.952 166 86 5 5 168 191 341 1.51e-21 95.9
MS.gene009128.t1 MTR_5g027570 45.263 95 51 1 101 195 93 186 1.34e-20 89.7
MS.gene009128.t1 MTR_4g100630 35.000 180 68 7 71 213 68 235 1.32e-19 89.0
MS.gene009128.t1 MTR_6g092540 64.615 65 21 1 102 166 99 161 4.45e-19 86.7
MS.gene009128.t1 MTR_1g022290 40.909 110 47 2 6 115 2 93 6.37e-19 81.3
MS.gene009128.t1 MTR_2g100930 46.535 101 49 3 67 166 77 173 1.03e-18 86.7
MS.gene009128.t1 MTR_8g101650 60.000 65 23 1 102 166 107 168 2.03e-18 84.7
MS.gene009128.t1 MTR_4g015130 62.069 58 20 1 110 167 3 58 5.52e-18 78.2
MS.gene009128.t1 MTR_3g116720 52.308 65 31 0 11 75 16 80 2.66e-17 76.3
MS.gene009128.t1 MTR_3g111880 54.545 66 30 0 8 73 4 69 3.65e-17 76.3
MS.gene009128.t1 MTR_0036s0260 54.167 72 31 1 96 167 24 93 6.23e-17 79.0
MS.gene009128.t1 MTR_4g107230 75.556 45 11 0 102 146 86 130 1.53e-16 79.3
MS.gene009128.t1 MTR_1g083180 45.192 104 50 4 63 162 22 122 1.62e-16 77.4
MS.gene009128.t1 MTR_5g037080 59.091 66 25 1 102 167 104 167 2.72e-16 79.0
MS.gene009128.t1 MTR_2g090305 54.167 72 31 1 96 167 24 93 2.72e-16 76.6
MS.gene009128.t1 MTR_5g020170 59.375 64 26 0 8 71 16 79 2.77e-16 73.9
MS.gene009128.t1 MTR_5g027550 50.633 79 36 2 91 168 70 146 3.26e-15 74.7
MS.gene009128.t1 MTR_3g104370 42.697 89 48 2 102 188 93 180 1.03e-14 73.2
MS.gene009128.t1 MTR_6g004250 50.725 69 34 0 5 73 4 72 1.65e-14 68.6
MS.gene009128.t1 MTR_1g048660 45.833 72 37 1 102 173 14 83 6.92e-14 67.0
MS.gene009128.t1 MTR_7g089210 50.000 70 35 0 14 83 15 84 1.55e-13 66.2
MS.gene009128.t1 MTR_8g077360 42.857 70 39 1 11 80 5 73 1.01e-12 63.2
MS.gene009128.t1 MTR_8g077380 43.478 69 38 1 11 79 5 72 1.08e-12 63.2
MS.gene009128.t1 MTR_8g077390 43.478 69 38 1 11 79 5 72 1.08e-12 63.2
MS.gene009128.t1 MTR_3g070110 45.570 79 38 1 101 174 96 174 2.28e-12 66.2
MS.gene009128.t1 MTR_5g020540 50.820 61 29 1 11 71 4 63 4.30e-12 61.2
MS.gene009128.t1 MTR_8g073050 34.234 111 51 2 102 207 105 198 1.04e-11 64.3
MS.gene009128.t1 MTR_3g013440 47.826 69 35 1 6 73 5 73 1.43e-11 60.5
MS.gene009128.t1 MTR_3g111920 48.387 62 30 2 11 71 3 63 3.78e-11 59.3
MS.gene009128.t1 MTR_6g043480 45.902 61 33 0 102 162 109 169 4.48e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009128.t1 AT5G08520 47.925 265 98 10 11 241 12 270 1.31e-58 192
MS.gene009128.t1 AT5G23650 34.759 374 156 13 11 349 13 333 6.94e-44 155
MS.gene009128.t1 AT5G04760 43.939 198 101 4 8 200 3 195 1.17e-42 148
MS.gene009128.t1 AT2G38090 44.681 188 77 5 6 169 24 208 4.25e-41 146
MS.gene009128.t1 AT1G49010 42.439 205 78 5 11 177 8 210 1.66e-40 145
MS.gene009128.t1 AT5G58900 42.373 177 82 3 11 169 34 208 8.61e-39 140
MS.gene009128.t1 AT3G11280 42.473 186 84 6 11 187 33 204 3.41e-38 137
MS.gene009128.t1 AT3G11280 42.473 186 84 6 11 187 33 204 3.41e-38 137
MS.gene009128.t1 AT5G05790 43.094 181 76 4 7 169 27 198 9.47e-37 134
MS.gene009128.t1 AT5G05790 43.094 181 76 4 7 169 27 198 9.47e-37 134
MS.gene009128.t1 AT5G01200 40.526 190 84 5 7 169 26 213 2.35e-34 127
MS.gene009128.t1 AT4G09450 41.875 160 82 5 10 167 6 156 8.17e-26 103
MS.gene009128.t1 AT3G10580 37.949 195 98 7 11 198 8 186 4.30e-24 100
MS.gene009128.t1 AT3G10580 37.949 195 98 7 11 198 8 186 7.12e-24 100
MS.gene009128.t1 AT1G75250 52.857 70 33 0 11 80 12 81 1.11e-18 80.5
MS.gene009128.t1 AT3G10590 35.556 180 94 7 11 173 7 181 2.23e-18 83.2
MS.gene009128.t1 AT1G75250 52.857 70 33 0 11 80 12 81 3.43e-18 80.1
MS.gene009128.t1 AT5G47390 56.579 76 25 2 91 166 93 160 3.76e-18 85.1
MS.gene009128.t1 AT4G39250 52.381 63 30 0 11 73 14 76 2.36e-17 77.0
MS.gene009128.t1 AT3G16350 52.273 88 30 3 59 146 108 183 2.78e-17 82.8
MS.gene009128.t1 AT5G61620 57.576 66 26 1 102 167 110 173 5.96e-17 81.3
MS.gene009128.t1 AT1G70000 63.636 66 22 1 102 167 100 163 1.82e-16 79.0
MS.gene009128.t1 AT1G70000 63.636 66 22 1 102 167 100 163 1.82e-16 79.0
MS.gene009128.t1 AT5G56840 56.923 65 27 1 102 166 93 156 2.43e-16 77.8
MS.gene009128.t1 AT1G74840 68.889 45 14 0 102 146 98 142 5.06e-16 77.0
MS.gene009128.t1 AT1G74840 68.889 45 14 0 102 146 98 142 6.17e-16 77.4
MS.gene009128.t1 AT1G19510 46.479 71 38 0 14 84 15 85 1.16e-15 72.4
MS.gene009128.t1 AT2G21650 47.222 72 38 0 11 82 14 85 4.39e-15 70.9
MS.gene009128.t1 AT1G19000 66.667 45 15 0 102 146 104 148 1.56e-14 73.6
MS.gene009128.t1 AT1G19000 66.667 45 15 0 102 146 104 148 1.56e-14 73.6
MS.gene009128.t1 AT2G18328 52.632 57 27 0 15 71 15 71 3.77e-13 64.7
MS.gene009128.t1 AT3G10585 34.503 171 71 7 11 173 7 144 1.61e-11 62.8
MS.gene009128.t1 AT3G10595 24.590 183 122 5 11 193 6 172 2.83e-11 62.4

Find 119 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAACATCACTATGAGATTT+TGG 0.187100 8.1:-39661231 MS.gene009128:CDS
TGGATGATCATCTAAATTTC+TGG 0.206174 8.1:+39659985 None:intergenic
GATGAGCAGGTTATTTCTTA+TGG 0.229350 8.1:-39660524 MS.gene009128:intron
TCAATTGCTTGCCCGGTAAT+TGG 0.238961 8.1:+39660319 None:intergenic
AACAGCATCCTCGGGATTAT+TGG 0.247617 8.1:+39661307 None:intergenic
TATGTTGCAGCCCCGCCTTC+TGG 0.274061 8.1:-39660010 MS.gene009128:CDS
GTATCTGCTTTCGGCGCTGC+AGG 0.317922 8.1:-39659896 MS.gene009128:CDS
CAGAGGATAATTTGAAGTTC+TGG 0.320137 8.1:+39660234 None:intergenic
TCTGTTGGAACTAGAAATTT+AGG 0.321437 8.1:-39660178 MS.gene009128:CDS
ATGGTATTGGACCAGTTTCT+TGG 0.328363 8.1:-39659844 MS.gene009128:CDS
TGAAAGAGGAGCTGTGAAAA+AGG 0.334187 8.1:-39661123 MS.gene009128:CDS
CCGGGAGCAGTCAGAATTCC+TGG 0.337631 8.1:+39660067 None:intergenic
GATCATCCAGCCCCACTTGC+TGG 0.353540 8.1:-39659971 MS.gene009128:CDS
ATGAGCAGGTTATTTCTTAT+GGG 0.354456 8.1:-39660523 MS.gene009128:intron
GGCATATTTGTCCAAGAAAC+TGG 0.357689 8.1:+39659833 None:intergenic
GATATCCACAACATTGAATC+TGG 0.364726 8.1:-39661203 MS.gene009128:CDS
AGGCTACCGGTTCTTATCAT+TGG 0.374780 8.1:-39661094 MS.gene009128:CDS
CTTATGGGCGTGGAGAAGTA+TGG 0.382631 8.1:-39660508 MS.gene009128:CDS
GCTCCCGGACACATGGCTTA+TGG 0.384505 8.1:-39659863 MS.gene009128:CDS
GGACACATGGCTTATGGTAT+TGG 0.393934 8.1:-39659857 MS.gene009128:CDS
GAACCTCAAGGGCCAATTAC+CGG 0.396923 8.1:-39660331 MS.gene009128:CDS
AGACGGGTTGTATCTGCTTT+CGG 0.398815 8.1:-39659905 MS.gene009128:CDS
GCAGGGTTTCCTTCTGCTCC+CGG 0.401027 8.1:-39659878 MS.gene009128:CDS
GATACAACCAGTTCTCCTAT+AGG 0.413028 8.1:+39660103 None:intergenic
CCAGCCCCACTTGCTGGACT+CGG 0.416423 8.1:-39659965 MS.gene009128:CDS
AGCAAATTCTGCCGGACAAA+CGG 0.424545 8.1:-39660290 MS.gene009128:CDS
ATAGGTGATATCGTGTATTC+TGG 0.431284 8.1:+39660357 None:intergenic
AGAAGTATGGAAAGGGTAAA+TGG 0.436340 8.1:-39660495 MS.gene009128:CDS
CCTTGGATCGGGCAACCTAT+AGG 0.440600 8.1:-39659929 MS.gene009128:CDS
GCCAGGGGTACCAATGAACT+TGG 0.443338 8.1:-39659813 MS.gene009128:CDS
AAAACTCCAGCACGTGGGAT+TGG 0.444600 8.1:+39660148 None:intergenic
CCTAGAGAGGACCAACCTAT+AGG 0.444649 8.1:-39660118 MS.gene009128:CDS
GTTTATGATGTGCCTTGGAT+CGG 0.445975 8.1:-39659941 MS.gene009128:CDS
CCGAGTCCAGCAAGTGGGGC+TGG 0.451356 8.1:+39659965 None:intergenic
AGTTTGTGTGGCCGTTTGTC+CGG 0.453502 8.1:+39660279 None:intergenic
GATACAACCCGTCTTCCTAT+AGG 0.454270 8.1:+39659914 None:intergenic
TTCTGTCCAATGATAAGAAC+CGG 0.457832 8.1:+39661088 None:intergenic
CCATCGATCAACAGCATCCT+CGG 0.458092 8.1:+39661298 None:intergenic
TCCTTCTGCTCCCGGACACA+TGG 0.459304 8.1:-39659870 MS.gene009128:CDS
AATTTCTGGTTCCAGAAGGC+GGG 0.459732 8.1:+39659999 None:intergenic
CCTATAGGTTGGTCCTCTCT+AGG 0.460076 8.1:+39660118 None:intergenic
AAAATTGCGGCTGATGTGCC+CGG 0.461117 8.1:-39661272 MS.gene009128:CDS
TTTATGATGTGCCTTGGATC+GGG 0.462141 8.1:-39659940 MS.gene009128:CDS
GGACCAACCTATAGGAGAAC+TGG 0.467312 8.1:-39660110 MS.gene009128:CDS
GTCATAGGACCCAAGTTCAT+TGG 0.473573 8.1:+39659803 None:intergenic
CCCAAGTTCATTGGTACCCC+TGG 0.474063 8.1:+39659812 None:intergenic
CGAAAGAGAAGAAGGAAAGT+AGG 0.474467 8.1:-39660384 MS.gene009128:CDS
TGTAGAATCAATTGCTTGCC+CGG 0.476569 8.1:+39660312 None:intergenic
TCGGAGTTTATGATGTGCCT+TGG 0.477536 8.1:-39659946 MS.gene009128:CDS
TATCCTCTGGCTCCACCTGC+CGG 0.481371 8.1:-39660220 MS.gene009128:CDS
TATCTGCTTTCGGCGCTGCA+GGG 0.484566 8.1:-39659895 MS.gene009128:CDS
GTATCCGAAGTTGGCACTCC+AGG 0.488034 8.1:-39660085 MS.gene009128:CDS
CCAGGAATTCTGACTGCTCC+CGG 0.491706 8.1:-39660067 MS.gene009128:CDS
CAGGTTATTTCTTATGGGCG+TGG 0.501373 8.1:-39660518 MS.gene009128:CDS
TAAATTGTTCGAAAATGCAT+TGG 0.506339 8.1:-39661330 MS.gene009128:CDS
ACTCCAGCACGTGGGATTGG+AGG 0.509106 8.1:+39660151 None:intergenic
ACAAAGCGTGCTGGTGAAAG+AGG 0.509612 8.1:-39661137 MS.gene009128:CDS
AACCTCAAGGGCCAATTACC+GGG 0.512811 8.1:-39660330 MS.gene009128:CDS
AATCAAAATAATGGATGAAG+TGG 0.514101 8.1:-39661387 None:intergenic
CAGAACTTCAAATTATCCTC+TGG 0.519752 8.1:-39660233 MS.gene009128:CDS
AATACCATAAGCCATGTGTC+CGG 0.520964 8.1:+39659859 None:intergenic
CGAGGATGCTGTTGATCGAT+GGG 0.525087 8.1:-39661297 MS.gene009128:CDS
CCGAGGATGCTGTTGATCGA+TGG 0.527921 8.1:-39661298 MS.gene009128:CDS
GGCGTGGAGAAGTATGGAAA+GGG 0.531559 8.1:-39660502 MS.gene009128:CDS
TGGCGAAGCAGCATACATTC+CGG 0.533982 8.1:+39660201 None:intergenic
GCCATGTGTCCGGGAGCAGA+AGG 0.540860 8.1:+39659869 None:intergenic
GTTTCTTGGACAAATATGCC+AGG 0.542042 8.1:-39659830 MS.gene009128:CDS
CATCGATCAACAGCATCCTC+GGG 0.542757 8.1:+39661299 None:intergenic
AATCCTCCAATCCCACGTGC+TGG 0.542954 8.1:-39660154 MS.gene009128:CDS
GCTTGAGGAGCATAAACTCC+GGG 0.545991 8.1:+39660049 None:intergenic
GAATTCAACGAAAGAGAAGA+AGG 0.547173 8.1:-39660392 MS.gene009128:CDS
GAAGTTCTGGTACCAACAGA+TGG 0.547709 8.1:+39660247 None:intergenic
GAACTGGTTGTATCCGAAGT+TGG 0.550235 8.1:-39660094 MS.gene009128:CDS
CGGGCAACCTATAGGAAGAC+GGG 0.550451 8.1:-39659921 MS.gene009128:CDS
CATGCTCAGAAATACTTCAA+AGG 0.551854 8.1:-39660418 MS.gene009128:CDS
ATACCATAAGCCATGTGTCC+GGG 0.552377 8.1:+39659860 None:intergenic
GATTCTACAGCAAATTCTGC+CGG 0.557661 8.1:-39660298 MS.gene009128:CDS
TATGCTGCTTCGCCATCTGT+TGG 0.563547 8.1:-39660193 MS.gene009128:CDS
CCTATAGGTTGCCCGATCCA+AGG 0.564457 8.1:+39659929 None:intergenic
CAAAACCAGATTCAATGTTG+TGG 0.566485 8.1:+39661198 None:intergenic
GAAGCAGCATACATTCCGGC+AGG 0.568137 8.1:+39660205 None:intergenic
AAATTTCTGGTTCCAGAAGG+CGG 0.568201 8.1:+39659998 None:intergenic
ATTTCAGTAGGTGGAGCTTG+AGG 0.570653 8.1:+39660034 None:intergenic
AAGAGCTCAACAAAGCGTGC+TGG 0.576719 8.1:-39661146 MS.gene009128:CDS
AAATTTCTAGTTCCAACAGA+TGG 0.578638 8.1:+39660181 None:intergenic
TGGCCCTTGAGGTTCGACAT+AGG 0.580396 8.1:+39660339 None:intergenic
ATCACCTATGTCGAACCTCA+AGG 0.586168 8.1:-39660343 MS.gene009128:CDS
ATTTCTGGTTCCAGAAGGCG+GGG 0.586635 8.1:+39660000 None:intergenic
AATTCCTGGAGTGCCAACTT+CGG 0.593276 8.1:+39660081 None:intergenic
TTTCTTGGACAAATATGCCA+GGG 0.593394 8.1:-39659829 MS.gene009128:CDS
GCAGCATACATTCCGGCAGG+TGG 0.596107 8.1:+39660208 None:intergenic
GTACCAACAGATGGAGCTTG+AGG 0.598203 8.1:+39660256 None:intergenic
AAATTGCGGCTGATGTGCCC+GGG 0.599032 8.1:-39661271 MS.gene009128:CDS
CAACCAGTTCTCCTATAGGT+TGG 0.599335 8.1:+39660107 None:intergenic
TGCCCGGTAATTGGCCCTTG+AGG 0.600641 8.1:+39660328 None:intergenic
GCAACATACATTTCAGTAGG+TGG 0.602800 8.1:+39660025 None:intergenic
AAAGAATCATGATCTGGCAG+AGG 0.603467 8.1:+39661173 None:intergenic
TCTAAATTTCTGGTTCCAGA+AGG 0.603646 8.1:+39659995 None:intergenic
GGGCGTGGAGAAGTATGGAA+AGG 0.603697 8.1:-39660503 MS.gene009128:CDS
TCGGGCAACCTATAGGAAGA+CGG 0.605588 8.1:-39659922 MS.gene009128:CDS
ATCAAAATAATGGATGAAGT+GGG 0.606623 8.1:-39661386 None:intergenic
ACTCCTCAAGCTCCATCTGT+TGG 0.611272 8.1:-39660259 MS.gene009128:CDS
AAACTCCGAGTCCAGCAAGT+GGG 0.613833 8.1:+39659960 None:intergenic
ATTCCGGCAGGTGGAGCCAG+AGG 0.615826 8.1:+39660217 None:intergenic
GGAGCGAAAACTCCAGCACG+TGG 0.621781 8.1:+39660142 None:intergenic
AGCTTGAGGAGCATAAACTC+CGG 0.627574 8.1:+39660048 None:intergenic
ATTGGACAGAAGACGAACAC+AGG 0.628543 8.1:-39661076 MS.gene009128:intron
ATAGGTTGGTCCTCTCTAGG+AGG 0.628624 8.1:+39660121 None:intergenic
GCTGCAACATACATTTCAGT+AGG 0.629219 8.1:+39660022 None:intergenic
TCACCTATGTCGAACCTCAA+GGG 0.630804 8.1:-39660342 MS.gene009128:CDS
AACTCCGAGTCCAGCAAGTG+GGG 0.637926 8.1:+39659961 None:intergenic
CCAGGGGTACCAATGAACTT+GGG 0.650736 8.1:-39659812 MS.gene009128:CDS
TGCATTGGCCAATAATCCCG+AGG 0.661772 8.1:-39661315 MS.gene009128:CDS
TGGGTAGTAGAAGCTATGAG+TGG 0.665232 8.1:-39661367 MS.gene009128:CDS
TTCTTGGACAAATATGCCAG+GGG 0.665492 8.1:-39659828 MS.gene009128:CDS
TAAACTCCGAGTCCAGCAAG+TGG 0.668326 8.1:+39659959 None:intergenic
TGGAGCTTGAGGAGTTTGTG+TGG 0.688474 8.1:+39660267 None:intergenic
TGATCGATGGGAGAAAATTG+CGG 0.690864 8.1:-39661285 MS.gene009128:CDS
GAGCGAAAACTCCAGCACGT+GGG 0.731040 8.1:+39660143 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATAATTTATAATAATT+TGG + chr8.1:39660577-39660596 None:intergenic 0.0%
!! TAATGATATGATACTAATTA+AGG - chr8.1:39660190-39660209 MS.gene009128:CDS 15.0%
!! ATACAATAATTCCTTATACA+TGG + chr8.1:39660420-39660439 None:intergenic 20.0%
!! GTTATTATTTACAACTTACA+TGG - chr8.1:39660152-39660171 MS.gene009128:CDS 20.0%
!!! TATACATCAAATATTTCTAG+AGG - chr8.1:39660459-39660478 MS.gene009128:CDS 20.0%
! AAAAATATCAGAGAACTATG+TGG - chr8.1:39660679-39660698 MS.gene009128:intron 25.0%
! ACTCCTTCAACATAAAAAAA+AGG - chr8.1:39660340-39660359 MS.gene009128:CDS 25.0%
! AGCACTTTATCAATTATGAA+AGG + chr8.1:39660388-39660407 None:intergenic 25.0%
! CACACACATATATATTGATA+CGG + chr8.1:39660516-39660535 None:intergenic 25.0%
! CTAATTGTAATCCATGTATA+AGG - chr8.1:39660406-39660425 MS.gene009128:CDS 25.0%
! TAAATTGTTCGAAAATGCAT+TGG - chr8.1:39659819-39659838 MS.gene009128:CDS 25.0%
! TTTGAAAAAGAATCATGATC+TGG + chr8.1:39659985-39660004 None:intergenic 25.0%
!! TAAACATCACTATGAGATTT+TGG - chr8.1:39659918-39659937 MS.gene009128:CDS 25.0%
!! TATTTTCAAATTTGATGAGC+AGG - chr8.1:39660612-39660631 MS.gene009128:intron 25.0%
!!! ATGCCTTTTTTTTATGTTGA+AGG + chr8.1:39660346-39660365 None:intergenic 25.0%
ACTAATTAAGGTGAAGCTTT+GGG - chr8.1:39660202-39660221 MS.gene009128:CDS 30.0%
GTAAAACAAAGCTTAGCATA+TGG + chr8.1:39660555-39660574 None:intergenic 30.0%
TACTAATTAAGGTGAAGCTT+TGG - chr8.1:39660201-39660220 MS.gene009128:CDS 30.0%
TCTGTTGGAACTAGAAATTT+AGG - chr8.1:39660971-39660990 MS.gene009128:intron 30.0%
TGGATGATCATCTAAATTTC+TGG + chr8.1:39661167-39661186 None:intergenic 30.0%
! AAAAAAAAGGCATGAAGCTT+TGG - chr8.1:39660353-39660372 MS.gene009128:CDS 30.0%
! GTTTCTTGAGTTAGTTTCAA+TGG - chr8.1:39660317-39660336 MS.gene009128:CDS 30.0%
! TGAGCAAATGTATTTTGCAT+GGG + chr8.1:39661376-39661395 None:intergenic 30.0%
!! AAATTTCTAGTTCCAACAGA+TGG + chr8.1:39660971-39660990 None:intergenic 30.0%
!! ATGAGCAGGTTATTTCTTAT+GGG - chr8.1:39660626-39660645 MS.gene009128:intron 30.0%
!!! AATCTCTTCTAAAGTTTTCC+CGG + chr8.1:39659899-39659918 None:intergenic 30.0%
ATAGGTGATATCGTGTATTC+TGG + chr8.1:39660795-39660814 None:intergenic 35.0%
CAAAACCAGATTCAATGTTG+TGG + chr8.1:39659954-39659973 None:intergenic 35.0%
CAGAACTTCAAATTATCCTC+TGG - chr8.1:39660916-39660935 MS.gene009128:intron 35.0%
CATGCTCAGAAATACTTCAA+AGG - chr8.1:39660731-39660750 MS.gene009128:intron 35.0%
GAATTCAACGAAAGAGAAGA+AGG - chr8.1:39660757-39660776 MS.gene009128:intron 35.0%
GATATCCACAACATTGAATC+TGG - chr8.1:39659946-39659965 MS.gene009128:CDS 35.0%
TTCTGTCCAATGATAAGAAC+CGG + chr8.1:39660064-39660083 None:intergenic 35.0%
TTTCTTGGACAAATATGCCA+GGG - chr8.1:39661320-39661339 MS.gene009128:CDS 35.0%
! AGAAGTATGGAAAGGGTAAA+TGG - chr8.1:39660654-39660673 MS.gene009128:intron 35.0%
! CAGAGGATAATTTGAAGTTC+TGG + chr8.1:39660918-39660937 None:intergenic 35.0%
! GTGAGCAAATGTATTTTGCA+TGG + chr8.1:39661377-39661396 None:intergenic 35.0%
! TTTTGCATGGGAAATGTCAT+AGG + chr8.1:39661364-39661383 None:intergenic 35.0%
!! ATTATCTCTGGTGCTACTTT+AGG - chr8.1:39660280-39660299 MS.gene009128:CDS 35.0%
!! GATGAGCAGGTTATTTCTTA+TGG - chr8.1:39660625-39660644 MS.gene009128:intron 35.0%
!! TCTAAATTTCTGGTTCCAGA+AGG + chr8.1:39661157-39661176 None:intergenic 35.0%
!! TTATCTCTGGTGCTACTTTA+GGG - chr8.1:39660281-39660300 MS.gene009128:CDS 35.0%
!!! ATCTCTTCTAAAGTTTTCCC+GGG + chr8.1:39659898-39659917 None:intergenic 35.0%
AAAAAGGGAACTAAGGCTAC+CGG - chr8.1:39660042-39660061 MS.gene009128:CDS 40.0%
AAAGAATCATGATCTGGCAG+AGG + chr8.1:39659979-39659998 None:intergenic 40.0%
AATACCATAAGCCATGTGTC+CGG + chr8.1:39661293-39661312 None:intergenic 40.0%
AGCTGTGAAAAAGGGAACTA+AGG - chr8.1:39660035-39660054 MS.gene009128:CDS 40.0%
CATTAGAGTGTGCTCTATCA+AGG - chr8.1:39660246-39660265 MS.gene009128:CDS 40.0%
CGAAAGAGAAGAAGGAAAGT+AGG - chr8.1:39660765-39660784 MS.gene009128:intron 40.0%
GAAAGAGGAGCTGTGAAAAA+GGG - chr8.1:39660027-39660046 MS.gene009128:CDS 40.0%
GATACAACCAGTTCTCCTAT+AGG + chr8.1:39661049-39661068 None:intergenic 40.0%
GATTCTACAGCAAATTCTGC+CGG - chr8.1:39660851-39660870 MS.gene009128:intron 40.0%
GCAACATACATTTCAGTAGG+TGG + chr8.1:39661127-39661146 None:intergenic 40.0%
GCTGCAACATACATTTCAGT+AGG + chr8.1:39661130-39661149 None:intergenic 40.0%
GGCATATTTGTCCAAGAAAC+TGG + chr8.1:39661319-39661338 None:intergenic 40.0%
GTTTATGATGTGCCTTGGAT+CGG - chr8.1:39661208-39661227 MS.gene009128:CDS 40.0%
GTTTCTTGGACAAATATGCC+AGG - chr8.1:39661319-39661338 MS.gene009128:CDS 40.0%
TGAAAGAGGAGCTGTGAAAA+AGG - chr8.1:39660026-39660045 MS.gene009128:CDS 40.0%
TGATCGATGGGAGAAAATTG+CGG - chr8.1:39659864-39659883 MS.gene009128:CDS 40.0%
TGCTTTGCTTTGCTTTGCTT+TGG - chr8.1:39660108-39660127 MS.gene009128:CDS 40.0%
TGTAGAATCAATTGCTTGCC+CGG + chr8.1:39660840-39660859 None:intergenic 40.0%
TTCTTGGACAAATATGCCAG+GGG - chr8.1:39661321-39661340 MS.gene009128:CDS 40.0%
TTTATGATGTGCCTTGGATC+GGG - chr8.1:39661209-39661228 MS.gene009128:CDS 40.0%
! ATGGTATTGGACCAGTTTCT+TGG - chr8.1:39661305-39661324 MS.gene009128:CDS 40.0%
!! AAATTTCTGGTTCCAGAAGG+CGG + chr8.1:39661154-39661173 None:intergenic 40.0%
!! TGGTGCTACTTTAGGGTTTA+GGG - chr8.1:39660288-39660307 MS.gene009128:CDS 40.0%
AACAGCATCCTCGGGATTAT+TGG + chr8.1:39659845-39659864 None:intergenic 45.0%
AGCAAATTCTGCCGGACAAA+CGG - chr8.1:39660859-39660878 MS.gene009128:intron 45.0%
ATACCATAAGCCATGTGTCC+GGG + chr8.1:39661292-39661311 None:intergenic 45.0%
ATCACCTATGTCGAACCTCA+AGG - chr8.1:39660806-39660825 MS.gene009128:intron 45.0%
ATTGGACAGAAGACGAACAC+AGG - chr8.1:39660073-39660092 MS.gene009128:CDS 45.0%
ATTTCAGTAGGTGGAGCTTG+AGG + chr8.1:39661118-39661137 None:intergenic 45.0%
CAACCACTAATCCTAGCTAG+CGG + chr8.1:39660492-39660511 None:intergenic 45.0%
CAACCAGTTCTCCTATAGGT+TGG + chr8.1:39661045-39661064 None:intergenic 45.0%
GAACTGGTTGTATCCGAAGT+TGG - chr8.1:39661055-39661074 MS.gene009128:intron 45.0%
GATACAACCCGTCTTCCTAT+AGG + chr8.1:39661238-39661257 None:intergenic 45.0%
GGACACATGGCTTATGGTAT+TGG - chr8.1:39661292-39661311 MS.gene009128:CDS 45.0%
GTCATAGGACCCAAGTTCAT+TGG + chr8.1:39661349-39661368 None:intergenic 45.0%
GTCTCAGACTCGATTATCTC+TGG - chr8.1:39660268-39660287 MS.gene009128:CDS 45.0%
TCAATTGCTTGCCCGGTAAT+TGG + chr8.1:39660833-39660852 None:intergenic 45.0%
TCACCTATGTCGAACCTCAA+GGG - chr8.1:39660807-39660826 MS.gene009128:intron 45.0%
TCGGAGTTTATGATGTGCCT+TGG - chr8.1:39661203-39661222 MS.gene009128:CDS 45.0%
TGGGTAGTAGAAGCTATGAG+TGG - chr8.1:39659782-39659801 MS.gene009128:CDS 45.0%
! AATTCCTGGAGTGCCAACTT+CGG + chr8.1:39661071-39661090 None:intergenic 45.0%
! AGCTTGAGGAGCATAAACTC+CGG + chr8.1:39661104-39661123 None:intergenic 45.0%
! GAAGTTCTGGTACCAACAGA+TGG + chr8.1:39660905-39660924 None:intergenic 45.0%
!! AATTTCTGGTTCCAGAAGGC+GGG + chr8.1:39661153-39661172 None:intergenic 45.0%
!! AGACGGGTTGTATCTGCTTT+CGG - chr8.1:39661244-39661263 MS.gene009128:CDS 45.0%
!! AGGCTACCGGTTCTTATCAT+TGG - chr8.1:39660055-39660074 MS.gene009128:CDS 45.0%
!! CAGGTTATTTCTTATGGGCG+TGG - chr8.1:39660631-39660650 MS.gene009128:intron 45.0%
!! CTGGTGCTACTTTAGGGTTT+AGG - chr8.1:39660287-39660306 MS.gene009128:CDS 45.0%
AAAACTCCAGCACGTGGGAT+TGG + chr8.1:39661004-39661023 None:intergenic 50.0%
AAAATTGCGGCTGATGTGCC+CGG - chr8.1:39659877-39659896 MS.gene009128:CDS 50.0%
AAACTCCGAGTCCAGCAAGT+GGG + chr8.1:39661192-39661211 None:intergenic 50.0%
AACCTCAAGGGCCAATTACC+GGG - chr8.1:39660819-39660838 MS.gene009128:intron 50.0%
AAGAGCTCAACAAAGCGTGC+TGG - chr8.1:39660003-39660022 MS.gene009128:CDS 50.0%
ACTCCTCAAGCTCCATCTGT+TGG - chr8.1:39660890-39660909 MS.gene009128:intron 50.0%
AGTTTGTGTGGCCGTTTGTC+CGG + chr8.1:39660873-39660892 None:intergenic 50.0%
CATCGATCAACAGCATCCTC+GGG + chr8.1:39659853-39659872 None:intergenic 50.0%
CCATCGATCAACAGCATCCT+CGG + chr8.1:39659854-39659873 None:intergenic 50.0%
CCTAGAGAGGACCAACCTAT+AGG - chr8.1:39661031-39661050 MS.gene009128:intron 50.0%
CGAGGATGCTGTTGATCGAT+GGG - chr8.1:39659852-39659871 MS.gene009128:CDS 50.0%
CTTATGGGCGTGGAGAAGTA+TGG - chr8.1:39660641-39660660 MS.gene009128:intron 50.0%
GAACCTCAAGGGCCAATTAC+CGG - chr8.1:39660818-39660837 MS.gene009128:intron 50.0%
GGACCAACCTATAGGAGAAC+TGG - chr8.1:39661039-39661058 MS.gene009128:intron 50.0%
GTACCAACAGATGGAGCTTG+AGG + chr8.1:39660896-39660915 None:intergenic 50.0%
TAAACTCCGAGTCCAGCAAG+TGG + chr8.1:39661193-39661212 None:intergenic 50.0%
TCGGGCAACCTATAGGAAGA+CGG - chr8.1:39661227-39661246 MS.gene009128:CDS 50.0%
TGGAGCTTGAGGAGTTTGTG+TGG + chr8.1:39660885-39660904 None:intergenic 50.0%
TGGCGAAGCAGCATACATTC+CGG + chr8.1:39660951-39660970 None:intergenic 50.0%
! ACAAAGCGTGCTGGTGAAAG+AGG - chr8.1:39660012-39660031 MS.gene009128:CDS 50.0%
! AGTTTTCGCTCCTCCTAGAG+AGG - chr8.1:39661018-39661037 MS.gene009128:intron 50.0%
! GCTTGAGGAGCATAAACTCC+GGG + chr8.1:39661103-39661122 None:intergenic 50.0%
! GGCGTGGAGAAGTATGGAAA+GGG - chr8.1:39660647-39660666 MS.gene009128:intron 50.0%
! TATGCTGCTTCGCCATCTGT+TGG - chr8.1:39660956-39660975 MS.gene009128:intron 50.0%
! TGCATTGGCCAATAATCCCG+AGG - chr8.1:39659834-39659853 MS.gene009128:CDS 50.0%
!! ATAGGTTGGTCCTCTCTAGG+AGG + chr8.1:39661031-39661050 None:intergenic 50.0%
!! ATTTCTGGTTCCAGAAGGCG+GGG + chr8.1:39661152-39661171 None:intergenic 50.0%
!! CCAGGGGTACCAATGAACTT+GGG - chr8.1:39661337-39661356 MS.gene009128:CDS 50.0%
!! CCTATAGGTTGGTCCTCTCT+AGG + chr8.1:39661034-39661053 None:intergenic 50.0%
AAATTGCGGCTGATGTGCCC+GGG - chr8.1:39659878-39659897 MS.gene009128:CDS 55.0%
AACTCCGAGTCCAGCAAGTG+GGG + chr8.1:39661191-39661210 None:intergenic 55.0%
AATCCTCCAATCCCACGTGC+TGG - chr8.1:39660995-39661014 MS.gene009128:intron 55.0%
CCAGGAATTCTGACTGCTCC+CGG - chr8.1:39661082-39661101 MS.gene009128:CDS 55.0%
CCCAAGTTCATTGGTACCCC+TGG + chr8.1:39661340-39661359 None:intergenic 55.0%
CCGAGGATGCTGTTGATCGA+TGG - chr8.1:39659851-39659870 MS.gene009128:CDS 55.0%
CCTATAGGTTGCCCGATCCA+AGG + chr8.1:39661223-39661242 None:intergenic 55.0%
CCTTGGATCGGGCAACCTAT+AGG - chr8.1:39661220-39661239 MS.gene009128:CDS 55.0%
CGGGCAACCTATAGGAAGAC+GGG - chr8.1:39661228-39661247 MS.gene009128:CDS 55.0%
CGTCCGCTAGCTAGGATTAG+TGG - chr8.1:39660486-39660505 MS.gene009128:CDS 55.0%
GAAGCAGCATACATTCCGGC+AGG + chr8.1:39660947-39660966 None:intergenic 55.0%
GAGCGAAAACTCCAGCACGT+GGG + chr8.1:39661009-39661028 None:intergenic 55.0%
GAGGTTATCGTCCGCTAGCT+AGG - chr8.1:39660478-39660497 MS.gene009128:CDS 55.0%
GTATCCGAAGTTGGCACTCC+AGG - chr8.1:39661064-39661083 MS.gene009128:intron 55.0%
TATCTGCTTTCGGCGCTGCA+GGG - chr8.1:39661254-39661273 MS.gene009128:CDS 55.0%
TGGCCCTTGAGGTTCGACAT+AGG + chr8.1:39660813-39660832 None:intergenic 55.0%
! GGGCGTGGAGAAGTATGGAA+AGG - chr8.1:39660646-39660665 MS.gene009128:intron 55.0%
!! GCCAGGGGTACCAATGAACT+TGG - chr8.1:39661336-39661355 MS.gene009128:CDS 55.0%
ACTCCAGCACGTGGGATTGG+AGG + chr8.1:39661001-39661020 None:intergenic 60.0%
CCGGGAGCAGTCAGAATTCC+TGG + chr8.1:39661085-39661104 None:intergenic 60.0%
GATCATCCAGCCCCACTTGC+TGG - chr8.1:39661178-39661197 MS.gene009128:CDS 60.0%
GCAGCATACATTCCGGCAGG+TGG + chr8.1:39660944-39660963 None:intergenic 60.0%
GCAGGGTTTCCTTCTGCTCC+CGG - chr8.1:39661271-39661290 MS.gene009128:CDS 60.0%
GCTCCCGGACACATGGCTTA+TGG - chr8.1:39661286-39661305 MS.gene009128:CDS 60.0%
GGAGCGAAAACTCCAGCACG+TGG + chr8.1:39661010-39661029 None:intergenic 60.0%
GTATCTGCTTTCGGCGCTGC+AGG - chr8.1:39661253-39661272 MS.gene009128:CDS 60.0%
TATGTTGCAGCCCCGCCTTC+TGG - chr8.1:39661139-39661158 MS.gene009128:CDS 60.0%
TCCTTCTGCTCCCGGACACA+TGG - chr8.1:39661279-39661298 MS.gene009128:CDS 60.0%
TGCCCGGTAATTGGCCCTTG+AGG + chr8.1:39660824-39660843 None:intergenic 60.0%
! TATCCTCTGGCTCCACCTGC+CGG - chr8.1:39660929-39660948 MS.gene009128:intron 60.0%
ATTCCGGCAGGTGGAGCCAG+AGG + chr8.1:39660935-39660954 None:intergenic 65.0%
GCCATGTGTCCGGGAGCAGA+AGG + chr8.1:39661283-39661302 None:intergenic 65.0%
! CCAGCCCCACTTGCTGGACT+CGG - chr8.1:39661184-39661203 MS.gene009128:CDS 65.0%
CCGAGTCCAGCAAGTGGGGC+TGG + chr8.1:39661187-39661206 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 39659772 39661399 39659772 ID=MS.gene009128
chr8.1 mRNA 39659772 39661399 39659772 ID=MS.gene009128.t1;Parent=MS.gene009128
chr8.1 exon 39661077 39661399 39661077 ID=MS.gene009128.t1.exon1;Parent=MS.gene009128.t1
chr8.1 CDS 39661077 39661399 39661077 ID=cds.MS.gene009128.t1;Parent=MS.gene009128.t1
chr8.1 exon 39659772 39660537 39659772 ID=MS.gene009128.t1.exon2;Parent=MS.gene009128.t1
chr8.1 CDS 39659772 39660537 39659772 ID=cds.MS.gene009128.t1;Parent=MS.gene009128.t1
Gene Sequence

>MS.gene009128

ATGGATGAAGTGGGTAGTAGAAGCTATGAGTGGAGCAGCGAGCAAAATAAATTGTTCGAAAATGCATTGGCCAATAATCCCGAGGATGCTGTTGATCGATGGGAGAAAATTGCGGCTGATGTGCCCGGGAAAACTTTAGAAGAGATTAAACATCACTATGAGATTTTGGTGTATGATATCCACAACATTGAATCTGGTTTTGTGCCTCTGCCAGATCATGATTCTTTTTCAAAGAGCTCAACAAAGCGTGCTGGTGAAAGAGGAGCTGTGAAAAAGGGAACTAAGGCTACCGGTTCTTATCATTGGACAGAAGACGAACACAGGTTTGTTTATCTTTGCTTTGCTTTGCTTTGCTTTGGTAACTTAATTGTTTTTAGATTGTTATTATTTACAACTTACATGGCTGTTAAAAACATAATAATGATATGATACTAATTAAGGTGAAGCTTTGGGTCTACTAGCGTTGACTTGAGACATTAGAGTGTGCTCTATCAAGGTCTCAGACTCGATTATCTCTGGTGCTACTTTAGGGTTTAGGGTTTAGAGTTTCTTGAGTTAGTTTCAATGGACTCCTTCAACATAAAAAAAAGGCATGAAGCTTTGGTACAACTTACCTTTCATAATTGATAAAGTGCTAATTGTAATCCATGTATAAGGAATTATTGTATCTTAAATTATCATGTACACTATACATCAAATATTTCTAGAGGTTATCGTCCGCTAGCTAGGATTAGTGGTTGACCGTATCAATATATATGTGTGTGTTTTACATGCATGTTTCCATATGCTAAGCTTTGTTTTACCAAATTATTATAAATTATTATTAGTATTGTTTTTAAGTATTTTCAAATTTGATGAGCAGGTTATTTCTTATGGGCGTGGAGAAGTATGGAAAGGGTAAATGGCGAAAAATATCAGAGAACTATGTGGTGACAAGAACACATACACAAGTAGCAAGTCATGCTCAGAAATACTTCAAAGGTCTGAATTCAACGAAAGAGAAGAAGGAAAGTAGGCGATCCAGAATACACGATATCACCTATGTCGAACCTCAAGGGCCAATTACCGGGCAAGCAATTGATTCTACAGCAAATTCTGCCGGACAAACGGCCACACAAACTCCTCAAGCTCCATCTGTTGGTACCAGAACTTCAAATTATCCTCTGGCTCCACCTGCCGGAATGTATGCTGCTTCGCCATCTGTTGGAACTAGAAATTTAGGTAATCCTCCAATCCCACGTGCTGGAGTTTTCGCTCCTCCTAGAGAGGACCAACCTATAGGAGAACTGGTTGTATCCGAAGTTGGCACTCCAGGAATTCTGACTGCTCCCGGAGTTTATGCTCCTCAAGCTCCACCTACTGAAATGTATGTTGCAGCCCCGCCTTCTGGAACCAGAAATTTAGATGATCATCCAGCCCCACTTGCTGGACTCGGAGTTTATGATGTGCCTTGGATCGGGCAACCTATAGGAAGACGGGTTGTATCTGCTTTCGGCGCTGCAGGGTTTCCTTCTGCTCCCGGACACATGGCTTATGGTATTGGACCAGTTTCTTGGACAAATATGCCAGGGGTACCAATGAACTTGGGTCCTATGACATTTCCCATGCAAAATACATTTGCTCACTAA
Protein sequence

>MS.gene009128.t1

MDEVGSRSYEWSSEQNKLFENALANNPEDAVDRWEKIAADVPGKTLEEIKHHYEILVYDIHNIESGFVPLPDHDSFSKSSTKRAGERGAVKKGTKATGSYHWTEDEHRLFLMGVEKYGKGKWRKISENYVVTRTHTQVASHAQKYFKGLNSTKEKKESRRSRIHDITYVEPQGPITGQAIDSTANSAGQTATQTPQAPSVGTRTSNYPLAPPAGMYAASPSVGTRNLGNPPIPRAGVFAPPREDQPIGELVVSEVGTPGILTAPGVYAPQAPPTEMYVAAPPSGTRNLDDHPAPLAGLGVYDVPWIGQPIGRRVVSAFGAAGFPSAPGHMAYGIGPVSWTNMPGVPMNLGPMTFPMQNTFAH