AlfalfaGEDB | MS.gene009156

M. sativa cultivar XinJiangDaYe / MS.gene009156

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene009156.t1	AET03169.2	89.1	460	33	2	1	459	1	444	5.30E-162	580.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene009156.t1	Q9FY82	55.4	233	98	2	1	229	1	231	1.4e-73	278.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene009156.t1	G7LG55	89.1	460	33	2	1	459	1	444	3.8e-162	580.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene009156.t1	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene009156.t1	MTR_8g063550	86.522	460	45	3	1	459	1	444	0.0	796
MS.gene009156.t1	MTR_8g093580	73.361	488	90	11	1	453	1	483	0.0	674
MS.gene009156.t1	MTR_8g063550	84.655	391	43	3	1	390	1	375	0.0	661
MS.gene009156.t1	MTR_8g063550	88.235	340	36	1	1	340	1	336	0.0	613
MS.gene009156.t1	MTR_8g063550	46.341	82	28	2	282	362	222	288	1.67e-11	65.9
MS.gene009156.t1	MTR_3g096140	64.255	235	78	3	1	229	1	235	1.70e-106	317
MS.gene009156.t1	MTR_3g096140	64.255	235	78	3	1	229	1	235	6.24e-105	316
MS.gene009156.t1	MTR_3g096140	64.319	213	71	2	22	229	2	214	7.55e-96	292
MS.gene009156.t1	MTR_1g090723	54.070	172	74	2	8	176	10	179	3.36e-65	221
MS.gene009156.t1	MTR_1g097300	54.857	175	79	0	7	181	20	194	6.35e-65	219

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene009156.t1	AT5G09330	52.157	255	108	3	1	243	1	253	3.60e-87	275
MS.gene009156.t1	AT5G09330	52.157	255	108	3	1	243	1	253	3.60e-87	275
MS.gene009156.t1	AT5G09330	52.157	255	108	3	1	243	1	253	3.60e-87	275
MS.gene009156.t1	AT5G09330	52.157	255	108	3	1	243	1	253	3.60e-87	275
MS.gene009156.t1	AT5G09330	52.157	255	108	3	1	243	1	253	3.60e-87	275
MS.gene009156.t1	AT5G64060	54.741	232	95	2	1	228	1	226	4.95e-82	257
MS.gene009156.t1	AT5G04410	57.303	178	76	0	2	179	5	182	9.47e-74	242
MS.gene009156.t1	AT3G10500	57.059	170	73	0	2	171	5	174	1.71e-69	231
MS.gene009156.t1	AT3G10490	55.682	176	76	2	6	180	27	201	1.70e-67	216
MS.gene009156.t1	AT3G10480	56.897	174	73	2	6	178	27	199	8.48e-67	221

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Find 146 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACTGATATTTCATAC+TGG	0.437726	8.1:+39966311	MS.gene009156:CDS
AAAAGGAAGGTCCTGGTCCC+AGG	0.470057	8.1:+39967142	MS.gene009156:CDS
AAAGTGGGAGCTAGTGCAGC+TGG	0.489936	8.1:-39967240	None:intergenic
AAATACCTTACAGATTACAT+AGG	0.536956	8.1:-39967118	None:intergenic
AAATTCACGTCAAACAGGAT+TGG	0.579546	8.1:+39967638	MS.gene009156:CDS
AAATTCATGTAAAACAAGAT+TGG	0.499270	8.1:+39967683	MS.gene009156:CDS
AACAGAATAATCAAATTGTG+GGG	0.640227	8.1:+39966282	MS.gene009156:CDS
AACCATTATATCCAATAGCA+TGG	0.540691	8.1:-39967305	None:intergenic
AACCATTTAATGAGGAAGAC+TGG	0.493900	8.1:+39967184	MS.gene009156:CDS
AACTGATAAAGGAATTGTTC+AGG	0.431894	8.1:+39966400	MS.gene009156:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACCATTATATCCAATAGCA+TGG	-	chr8.1:39967308-39967327	None:intergenic	30.0%
AACTGATAAAGGAATTGTTC+AGG	+	chr8.1:39966400-39966419	MS.gene009156:CDS	30.0%
ACAAAACTATTAGATGTCAC+AGG	-	chr8.1:39967267-39967286	None:intergenic	30.0%
AGTAAAATAGGCACTTCATA+AGG	-	chr8.1:39966898-39966917	None:intergenic	30.0%
ATATGGGAAACCATTTAATG+AGG	+	chr8.1:39967176-39967195	MS.gene009156:CDS	30.0%
CTATTTGACATGAATTTGCA+GGG	-	chr8.1:39967470-39967489	None:intergenic	30.0%
CTGTTTGACATGAATTTGAA+GGG	-	chr8.1:39967554-39967573	None:intergenic	30.0%
CTTCAAATTCATGTCAAACA+GGG	+	chr8.1:39967553-39967572	MS.gene009156:CDS	30.0%
GAAAACAAAAAAACACGAGA+AGG	-	chr8.1:39967874-39967893	None:intergenic	30.0%
GAACAATTCCTTTATCAGTT+AGG	-	chr8.1:39966400-39966419	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	39965891	39968300	39965891	ID=MS.gene009156
chr8.1	mRNA	39965891	39968300	39965891	ID=MS.gene009156.t1;Parent=MS.gene009156
chr8.1	exon	39965891	39966047	39965891	ID=MS.gene009156.t1.exon1;Parent=MS.gene009156.t1
chr8.1	CDS	39965891	39966047	39965891	ID=cds.MS.gene009156.t1;Parent=MS.gene009156.t1
chr8.1	exon	39966144	39966421	39966144	ID=MS.gene009156.t1.exon2;Parent=MS.gene009156.t1
chr8.1	CDS	39966144	39966421	39966144	ID=cds.MS.gene009156.t1;Parent=MS.gene009156.t1
chr8.1	exon	39967114	39967848	39967114	ID=MS.gene009156.t1.exon3;Parent=MS.gene009156.t1
chr8.1	CDS	39967114	39967848	39967114	ID=cds.MS.gene009156.t1;Parent=MS.gene009156.t1
chr8.1	exon	39968091	39968300	39968091	ID=MS.gene009156.t1.exon4;Parent=MS.gene009156.t1
chr8.1	CDS	39968091	39968300	39968091	ID=cds.MS.gene009156.t1;Parent=MS.gene009156.t1

Gene Sequence

>MS.gene009156

ATGGCTATACCGAAATTGGTTCCGGGGTTTCGATTCTCTCCAACTGGAGTTGAATTGATCAAATATTTTCTCAAAAGGAAAGTGTTGGGGAAAAAGTTTCATAACGATGTCATTGCTGAACTTGACATATACAAATACGCACCTTGGGATCTCCCAGGTAGTTAATTAATTTCACAAATTTCGTATCATAGATTAATTTCTAAATGTGCTGTTAATAATTAAGTTTTGTTTTTTTTTTTGTTTGTTTTTTCAGATTTATCTTATCTCCAAAACGGGGATTTGGAGTGGTATTTCTTCTGTCCGATAGGGAAGAAGTATGGAAGTGGGTCGAGGATGAATCGATCTACGGAAACAGGGTTTTGGAAAGCTACTGGTAAGGATAGAGCTGTTCAACAGAATAATCAAATTGTGGGGATGATTAAAACACTGATATTTCATACTGGAAAAGCACCTCGTGGTGATCGCACTGATTGGGTTATGCATGAGTATAGGCTTGAAGATAAGGACCTAACTGATAAAGGAATTGTTCAGGTGTGTGTTCATTTATTTGCTATATGATTTGTATTGATAAAAATATTATATGCTAGAAATTGTTCAGTTGTTCATTTATTTGCTATATGATTTGTATTGATAAAAATATTATGTGCTTTATTATGGAGACATATGTGTAAGTTAGCATCTTGATATGTGGCAGTTTTGTAGTTGCGCTTTTGATTGTGGATGCACATAAAGTTATATTGTACTCTTAGTGTTGATGCTATTGGCATCTATTTTTTTCAATGTAGACTGTAGTAGATAAACGTTTATCTGTTTTTGAAGCATAGATATTACATTGGCTTTTATGTCTCCACCTACTATGTCACTAATGGCATTGACCTCCTCTAAATGTGGGGGTTGCATTTTAAAGTTTGAAGTGTGGAGTTCTCATTGACTGCAGTTTAGTTCATGATAATTTTGCATGCACATGTATAGGAGAATCCTTGAAATATTGTTGATCCTCCTTACCTTATGAAGTGCCTATTTTACTTTTGTTGAATCCTTGAAATAGAATCATGTTAATTTATGTTTTGATTGACACCCAAAATGAGATTTGCTGTTTTTACATGATGAAGTTGGTACGCCTTCTTGCATATTTTAATCATTTGATTGATAATTTTTCCGTCCTGTTTTCATTGTGAATACATTTTTAACAAGCTCTTTTGGTTTGTCTTTTTAAATCACAGGATTCCTATGTAATCTGTAAGGTATTTCAAAAGGAAGGTCCTGGTCCCAGGAATGGTGCACAATATGGGAAACCATTTAATGAGGAAGACTGGAGTGATGATGAAGTAGGAATACCATTTGCTGAGCCAGCTGCACTAGCTCCCACTTTGCCTGTGACATCTAATAGTTTTGTTCTAAATGACCAGAATCTCCATGCTATTGGATATAATGGTTCAATATCCATGCCATGTCAATCAGGATTGATGCCTTCTCCCGATCCAGCAAATTCATGTCAAACAGGATTACAAACAGGATTACCGCCTTCTCCCGACCCTGCAAATTCATGTCAAACAGGAGTTCCACCTTCTCCCTACCCTGCAAATTCATGTCAAATAGGATTGACGCCTTCTGTAGACCCTGTGAATTCATGTCAAACAGGATTTATGCCGTCTCCCGACCCTTCAAATTCATGTCAAACAGGGTATATGCCGTCTCCCGATCCTGCAAATGAATGTCAAATAGGATTTATGTCTCCCGACCCTGCAAATTCACGTCAAACAGGATTGGAGCTGTCTCCCACTGGCCCTGCAAATTCATGTAAAACAAGATTGGTGCCTTCTCCCGACCCTGTGGATAATTCATATCATCAAGCTGTTAATAATGATGACCCTGTGGATAATTCATATCATCAAGCTGTTAATAATGATGACATTTTATCAATGCTTGATATGTTCGACGACGACATATTGCCTGAGGTATGCTTATCTGTTTCTTCAACCTTCTCGTGTTTTTTTGTTTTCTTGGAAACAGTATGATGTTTCTTTTTTATGTATGGTTTTAGTGTTTTCTACTCTTGTAGGCTTCGTGTTTTAGCTATCCCCTGCAGTTTGCATTGTCTCCTCATAATGTTAATGCCATTTTACTAAATGATTGTGATATATATAGCGACTCTTGATTTCTTTAAGGTTAACCGAATACTGACATTATTTTTGGCCAGGAAAACAATGCTGAAGGTGCACTATCAACTGACTTTTTTGATGGTTTGGGAGACCTGGATTGCTTGGGACCTGTTGGCCAGAATGCTGACTTTAGCACATACGGAATGGCTCCTACGGGGGATGACTACTTGGATTTCATGGAGTTGATTGATCTAGACTCCGAGATGTTCTGGCAGAGTGCTGCGGAACCTAAGTTGGACCCAAAATAA

Protein sequence

>MS.gene009156.t1

MAIPKLVPGFRFSPTGVELIKYFLKRKVLGKKFHNDVIAELDIYKYAPWDLPDLSYLQNGDLEWYFFCPIGKKYGSGSRMNRSTETGFWKATGKDRAVQQNNQIVGMIKTLIFHTGKAPRGDRTDWVMHEYRLEDKDLTDKGIVQDSYVICKVFQKEGPGPRNGAQYGKPFNEEDWSDDEVGIPFAEPAALAPTLPVTSNSFVLNDQNLHAIGYNGSISMPCQSGLMPSPDPANSCQTGLQTGLPPSPDPANSCQTGVPPSPYPANSCQIGLTPSVDPVNSCQTGFMPSPDPSNSCQTGYMPSPDPANECQIGFMSPDPANSRQTGLELSPTGPANSCKTRLVPSPDPVDNSYHQAVNNDDPVDNSYHQAVNNDDILSMLDMFDDDILPEENNAEGALSTDFFDGLGDLDCLGPVGQNADFSTYGMAPTGDDYLDFMELIDLDSEMFWQSAAEPKLDPK