Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009164.t1 | XP_003628698.1 | 96.3 | 190 | 7 | 0 | 1 | 190 | 1 | 190 | 1.90E-100 | 375.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009164.t1 | Q9FNN6 | 55.7 | 201 | 75 | 3 | 1 | 190 | 3 | 200 | 3.7e-52 | 206.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009164.t1 | G7I733 | 96.3 | 190 | 7 | 0 | 1 | 190 | 1 | 190 | 1.4e-100 | 375.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene009164.t1 | TF | MYB |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009164.t1 | MTR_8g063600 | 96.429 | 196 | 7 | 0 | 1 | 196 | 1 | 196 | 3.11e-142 | 398 |
MS.gene009164.t1 | MTR_8g063870 | 67.179 | 195 | 50 | 4 | 1 | 195 | 1 | 181 | 9.91e-82 | 244 |
MS.gene009164.t1 | MTR_4g111975 | 48.661 | 224 | 78 | 6 | 6 | 194 | 4 | 225 | 1.46e-59 | 188 |
MS.gene009164.t1 | MTR_1g111830 | 54.444 | 180 | 76 | 3 | 8 | 183 | 22 | 199 | 4.85e-55 | 175 |
MS.gene009164.t1 | MTR_5g081860 | 50.000 | 178 | 87 | 1 | 8 | 183 | 25 | 202 | 5.54e-54 | 173 |
MS.gene009164.t1 | MTR_3g462790 | 47.872 | 188 | 88 | 3 | 2 | 181 | 35 | 220 | 1.03e-53 | 174 |
MS.gene009164.t1 | MTR_5g069710 | 48.619 | 181 | 82 | 4 | 2 | 175 | 23 | 199 | 1.78e-52 | 170 |
MS.gene009164.t1 | MTR_7g067080 | 47.283 | 184 | 86 | 2 | 9 | 183 | 34 | 215 | 3.28e-50 | 165 |
MS.gene009164.t1 | MTR_1g033600 | 56.250 | 128 | 42 | 1 | 1 | 114 | 3 | 130 | 7.86e-43 | 140 |
MS.gene009164.t1 | MTR_1g033620 | 69.737 | 76 | 21 | 1 | 121 | 196 | 20 | 93 | 2.85e-28 | 106 |
MS.gene009164.t1 | MTR_5g075760 | 39.779 | 181 | 89 | 8 | 5 | 177 | 8 | 176 | 1.69e-26 | 101 |
MS.gene009164.t1 | MTR_6g092540 | 67.568 | 74 | 22 | 1 | 100 | 173 | 91 | 162 | 7.68e-26 | 101 |
MS.gene009164.t1 | MTR_5g075790 | 37.500 | 176 | 99 | 6 | 5 | 177 | 17 | 184 | 1.09e-25 | 99.4 |
MS.gene009164.t1 | MTR_5g088010 | 59.740 | 77 | 30 | 1 | 102 | 177 | 56 | 132 | 1.90e-25 | 99.4 |
MS.gene009164.t1 | MTR_4g100630 | 60.256 | 78 | 29 | 1 | 95 | 172 | 84 | 159 | 2.10e-25 | 100 |
MS.gene009164.t1 | MTR_2g100930 | 62.195 | 82 | 25 | 2 | 95 | 172 | 94 | 173 | 3.17e-25 | 100 |
MS.gene009164.t1 | MTR_8g101650 | 63.014 | 73 | 24 | 1 | 100 | 172 | 99 | 168 | 8.52e-25 | 98.2 |
MS.gene009164.t1 | MTR_5g088060 | 63.158 | 76 | 26 | 2 | 103 | 177 | 270 | 344 | 1.52e-23 | 97.1 |
MS.gene009164.t1 | MTR_5g488160 | 63.158 | 76 | 26 | 2 | 103 | 177 | 270 | 344 | 1.52e-23 | 97.1 |
MS.gene009164.t1 | MTR_5g027570 | 54.430 | 79 | 36 | 0 | 102 | 180 | 88 | 166 | 3.05e-23 | 93.2 |
MS.gene009164.t1 | MTR_1g022290 | 56.522 | 69 | 30 | 0 | 4 | 72 | 1 | 69 | 3.86e-22 | 86.3 |
MS.gene009164.t1 | MTR_5g037080 | 60.759 | 79 | 29 | 1 | 95 | 173 | 91 | 167 | 9.01e-21 | 87.8 |
MS.gene009164.t1 | MTR_3g116720 | 52.308 | 65 | 31 | 0 | 10 | 74 | 16 | 80 | 2.22e-20 | 81.3 |
MS.gene009164.t1 | MTR_4g107230 | 71.154 | 52 | 15 | 0 | 100 | 151 | 78 | 129 | 4.48e-20 | 85.5 |
MS.gene009164.t1 | MTR_3g111880 | 53.623 | 69 | 32 | 0 | 4 | 72 | 1 | 69 | 8.23e-20 | 80.1 |
MS.gene009164.t1 | MTR_3g104370 | 50.000 | 84 | 41 | 1 | 96 | 178 | 81 | 164 | 1.23e-19 | 83.6 |
MS.gene009164.t1 | MTR_5g027550 | 42.593 | 108 | 59 | 2 | 74 | 180 | 47 | 152 | 1.02e-18 | 80.9 |
MS.gene009164.t1 | MTR_0036s0260 | 54.412 | 68 | 29 | 1 | 106 | 173 | 28 | 93 | 6.45e-18 | 78.6 |
MS.gene009164.t1 | MTR_5g020170 | 52.941 | 68 | 32 | 0 | 5 | 72 | 14 | 81 | 8.87e-18 | 75.1 |
MS.gene009164.t1 | MTR_7g089210 | 52.174 | 69 | 33 | 0 | 14 | 82 | 16 | 84 | 1.93e-17 | 73.9 |
MS.gene009164.t1 | MTR_2g090305 | 54.412 | 68 | 29 | 1 | 106 | 173 | 28 | 93 | 1.00e-16 | 74.7 |
MS.gene009164.t1 | MTR_6g004250 | 50.000 | 72 | 36 | 0 | 1 | 72 | 1 | 72 | 1.32e-16 | 71.6 |
MS.gene009164.t1 | MTR_4g015130 | 60.000 | 60 | 22 | 1 | 116 | 175 | 3 | 60 | 1.79e-16 | 71.2 |
MS.gene009164.t1 | MTR_3g013440 | 49.315 | 73 | 36 | 1 | 1 | 72 | 1 | 73 | 7.93e-16 | 69.7 |
MS.gene009164.t1 | MTR_3g070110 | 33.939 | 165 | 95 | 6 | 17 | 173 | 9 | 167 | 3.78e-14 | 68.6 |
MS.gene009164.t1 | MTR_1g048660 | 45.455 | 77 | 38 | 2 | 107 | 182 | 13 | 86 | 4.70e-14 | 65.5 |
MS.gene009164.t1 | MTR_3g111920 | 45.312 | 64 | 33 | 2 | 10 | 72 | 3 | 65 | 6.98e-13 | 62.0 |
MS.gene009164.t1 | MTR_8g077360 | 38.356 | 73 | 44 | 1 | 7 | 79 | 2 | 73 | 7.20e-13 | 61.6 |
MS.gene009164.t1 | MTR_8g077380 | 38.889 | 72 | 43 | 1 | 7 | 78 | 2 | 72 | 9.43e-13 | 61.2 |
MS.gene009164.t1 | MTR_8g077390 | 38.889 | 72 | 43 | 1 | 7 | 78 | 2 | 72 | 9.43e-13 | 61.2 |
MS.gene009164.t1 | MTR_1g083180 | 45.679 | 81 | 42 | 2 | 108 | 187 | 63 | 142 | 2.21e-12 | 63.2 |
MS.gene009164.t1 | MTR_8g077420 | 43.284 | 67 | 35 | 2 | 4 | 70 | 1 | 64 | 5.64e-12 | 59.3 |
MS.gene009164.t1 | MTR_5g020540 | 47.541 | 61 | 31 | 1 | 10 | 70 | 4 | 63 | 1.85e-11 | 57.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009164.t1 | AT5G08520 | 59.000 | 200 | 70 | 2 | 1 | 190 | 3 | 200 | 3.18e-74 | 226 |
MS.gene009164.t1 | AT5G23650 | 49.261 | 203 | 90 | 3 | 3 | 194 | 6 | 206 | 3.64e-53 | 173 |
MS.gene009164.t1 | AT5G58900 | 47.253 | 182 | 83 | 2 | 5 | 175 | 29 | 208 | 9.74e-52 | 168 |
MS.gene009164.t1 | AT5G04760 | 52.941 | 170 | 75 | 3 | 6 | 175 | 2 | 166 | 1.25e-51 | 165 |
MS.gene009164.t1 | AT2G38090 | 47.826 | 184 | 78 | 3 | 8 | 175 | 27 | 208 | 1.32e-51 | 168 |
MS.gene009164.t1 | AT1G49010 | 47.475 | 198 | 72 | 4 | 10 | 177 | 8 | 203 | 1.82e-51 | 168 |
MS.gene009164.t1 | AT5G05790 | 46.448 | 183 | 90 | 4 | 7 | 183 | 28 | 208 | 3.00e-48 | 159 |
MS.gene009164.t1 | AT5G05790 | 46.448 | 183 | 90 | 4 | 7 | 183 | 28 | 208 | 3.00e-48 | 159 |
MS.gene009164.t1 | AT3G11280 | 50.610 | 164 | 77 | 2 | 10 | 173 | 33 | 192 | 5.20e-48 | 157 |
MS.gene009164.t1 | AT3G11280 | 50.610 | 164 | 77 | 2 | 10 | 173 | 33 | 192 | 5.20e-48 | 157 |
MS.gene009164.t1 | AT5G01200 | 44.086 | 186 | 82 | 5 | 10 | 175 | 30 | 213 | 1.85e-42 | 144 |
MS.gene009164.t1 | AT3G10580 | 42.222 | 180 | 79 | 5 | 10 | 183 | 8 | 168 | 2.00e-37 | 130 |
MS.gene009164.t1 | AT3G10580 | 42.222 | 180 | 79 | 5 | 10 | 183 | 8 | 168 | 5.02e-37 | 130 |
MS.gene009164.t1 | AT4G09450 | 42.105 | 171 | 85 | 3 | 4 | 174 | 1 | 157 | 2.96e-34 | 120 |
MS.gene009164.t1 | AT5G47390 | 57.732 | 97 | 39 | 1 | 84 | 180 | 74 | 168 | 9.60e-28 | 107 |
MS.gene009164.t1 | AT5G56840 | 59.740 | 77 | 30 | 1 | 101 | 177 | 86 | 161 | 2.18e-23 | 93.6 |
MS.gene009164.t1 | AT3G10590 | 35.829 | 187 | 93 | 8 | 4 | 174 | 1 | 176 | 8.03e-23 | 91.3 |
MS.gene009164.t1 | AT1G70000 | 58.228 | 79 | 31 | 1 | 95 | 173 | 87 | 163 | 8.98e-21 | 87.0 |
MS.gene009164.t1 | AT1G70000 | 58.228 | 79 | 31 | 1 | 95 | 173 | 87 | 163 | 8.98e-21 | 87.0 |
MS.gene009164.t1 | AT5G61620 | 52.439 | 82 | 37 | 1 | 93 | 174 | 95 | 174 | 1.04e-20 | 87.8 |
MS.gene009164.t1 | AT3G16350 | 61.429 | 70 | 19 | 1 | 84 | 153 | 123 | 184 | 1.41e-20 | 88.2 |
MS.gene009164.t1 | AT4G39250 | 47.368 | 76 | 40 | 0 | 10 | 85 | 14 | 89 | 2.43e-20 | 82.0 |
MS.gene009164.t1 | AT1G75250 | 49.333 | 75 | 38 | 0 | 5 | 79 | 7 | 81 | 7.27e-20 | 80.5 |
MS.gene009164.t1 | AT1G75250 | 49.333 | 75 | 38 | 0 | 5 | 79 | 7 | 81 | 2.99e-19 | 79.7 |
MS.gene009164.t1 | AT1G74840 | 70.588 | 51 | 15 | 0 | 101 | 151 | 91 | 141 | 2.62e-18 | 80.1 |
MS.gene009164.t1 | AT1G74840 | 70.588 | 51 | 15 | 0 | 101 | 151 | 91 | 141 | 3.21e-18 | 80.5 |
MS.gene009164.t1 | AT1G19000 | 61.667 | 60 | 23 | 0 | 92 | 151 | 88 | 147 | 4.50e-18 | 80.1 |
MS.gene009164.t1 | AT1G19000 | 61.667 | 60 | 23 | 0 | 92 | 151 | 88 | 147 | 4.50e-18 | 80.1 |
MS.gene009164.t1 | AT2G21650 | 50.000 | 72 | 36 | 0 | 10 | 81 | 14 | 85 | 2.63e-17 | 73.9 |
MS.gene009164.t1 | AT2G18328 | 55.932 | 59 | 26 | 0 | 14 | 72 | 15 | 73 | 5.09e-16 | 70.1 |
MS.gene009164.t1 | AT1G19510 | 46.377 | 69 | 37 | 0 | 14 | 82 | 16 | 84 | 5.24e-15 | 68.2 |
Find 51 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGCTTGCTTGACCGGTAAT+TGG | 0.261142 | 8.1:-40083178 | None:intergenic |
TCACAGAACAATGGATGAAA+TGG | 0.332083 | 8.1:+40080413 | None:intergenic |
GATATCAACCACATTGAATC+TGG | 0.363693 | 8.1:+40080594 | MS.gene009164:CDS |
CACCCCATCCATGGTTCTCC+AGG | 0.402855 | 8.1:-40082979 | None:intergenic |
CCATCGATCCACAGCGTCCT+CGG | 0.411794 | 8.1:-40080499 | None:intergenic |
TTGAACAGGCTATTTCTTCA+AGG | 0.422344 | 8.1:+40082956 | MS.gene009164:intron |
AGCAGAATTGCTTGCTTGAC+CGG | 0.425370 | 8.1:-40083185 | None:intergenic |
GCACCTCAAGGACCAATTAC+CGG | 0.448210 | 8.1:+40083166 | MS.gene009164:CDS |
CAGGCTATTTCTTCAAGGCC+TGG | 0.460201 | 8.1:+40082961 | MS.gene009164:intron |
GTGAAGGAGGAGCTGTGAAA+AGG | 0.473544 | 8.1:+40080673 | MS.gene009164:CDS |
CACAGAACAATGGATGAAAT+GGG | 0.481775 | 8.1:+40080414 | None:intergenic |
TGAAGGAGGAGCTGTGAAAA+GGG | 0.482163 | 8.1:+40080674 | MS.gene009164:CDS |
AGAACCATGGATGGGGTGAC+TGG | 0.483144 | 8.1:+40082984 | MS.gene009164:CDS |
TTCTTATCAAGAACGGCGAA+AGG | 0.494765 | 8.1:+40080713 | MS.gene009164:CDS |
AACGGCGAAAGGGTGTTCCT+TGG | 0.495446 | 8.1:+40080724 | MS.gene009164:CDS |
CATCGATCCACAGCGTCCTC+GGG | 0.504680 | 8.1:-40080498 | None:intergenic |
AGCTGTGAAAAGGGGAGCTA+AGG | 0.515551 | 8.1:+40080683 | MS.gene009164:CDS |
TCAGAAATACAAAATTCGTC+AGG | 0.519592 | 8.1:+40083066 | MS.gene009164:CDS |
AAAGGTAACATCATGTATGC+TGG | 0.520807 | 8.1:-40083122 | None:intergenic |
AAAATCGCGGCTGATGTACC+CGG | 0.524444 | 8.1:+40080525 | MS.gene009164:CDS |
CAAAGCATTTGAAAATGCAT+TGG | 0.524922 | 8.1:+40080467 | MS.gene009164:CDS |
TGAAAGAGAAGAAAGAAAGA+AGG | 0.525485 | 8.1:+40083095 | MS.gene009164:CDS |
CCGAGGACGCTGTGGATCGA+TGG | 0.531444 | 8.1:+40080499 | MS.gene009164:CDS |
GCATGGCTTGCTACTTGTGT+AGG | 0.536057 | 8.1:-40083043 | None:intergenic |
CTATGTTCATCTTCCGTCCA+AGG | 0.545058 | 8.1:-40080741 | None:intergenic |
AAGAGTTCAACAAAGCGTAC+TGG | 0.557383 | 8.1:+40080651 | MS.gene009164:CDS |
AAGGCCTGGAGAACCATGGA+TGG | 0.559427 | 8.1:+40082975 | MS.gene009164:CDS |
TCAACAAAGCGTACTGGTGA+AGG | 0.564550 | 8.1:+40080657 | MS.gene009164:CDS |
CGAGGACGCTGTGGATCGAT+GGG | 0.568594 | 8.1:+40080500 | MS.gene009164:CDS |
CTTGGACGGAAGATGAACAT+AGG | 0.569094 | 8.1:+40080742 | MS.gene009164:CDS |
TTCGCCAGTCACCCCATCCA+TGG | 0.577904 | 8.1:-40082988 | None:intergenic |
GCGAAAGGGTGTTCCTTGGA+CGG | 0.581376 | 8.1:+40080728 | MS.gene009164:CDS |
AGGCCTGGAGAACCATGGAT+GGG | 0.582995 | 8.1:+40082976 | MS.gene009164:CDS |
TCTTATCAAGAACGGCGAAA+GGG | 0.585934 | 8.1:+40080714 | MS.gene009164:CDS |
AAAGAATCATAATCTGGCAG+AGG | 0.587497 | 8.1:-40080624 | None:intergenic |
CTTCGAGTTCTTATCAAGAA+CGG | 0.593298 | 8.1:+40080706 | MS.gene009164:CDS |
AGAGATTAAGCGTCACTATG+TGG | 0.598823 | 8.1:+40080560 | MS.gene009164:CDS |
CTTCAAGGCCTGGAGAACCA+TGG | 0.600275 | 8.1:+40082971 | MS.gene009164:CDS |
GTGACTGGCGAAGTATATCA+AGG | 0.602104 | 8.1:+40082999 | MS.gene009164:CDS |
GGCCTGGAGAACCATGGATG+GGG | 0.620882 | 8.1:+40082977 | MS.gene009164:CDS |
AAATCGCGGCTGATGTACCC+GGG | 0.624584 | 8.1:+40080526 | MS.gene009164:CDS |
AAATGGGTAGCAGCTGTGAG+TGG | 0.631015 | 8.1:+40080430 | MS.gene009164:CDS |
GGAGACATTTCAGCACCTCA+AGG | 0.642144 | 8.1:+40083154 | MS.gene009164:CDS |
ACAAAGCGTACTGGTGAAGG+AGG | 0.643312 | 8.1:+40080660 | MS.gene009164:CDS |
GAAGGAGGAGCTGTGAAAAG+GGG | 0.644294 | 8.1:+40080675 | MS.gene009164:CDS |
GAATTATCCCGAGGACGCTG+TGG | 0.679154 | 8.1:+40080491 | MS.gene009164:CDS |
TGCATTGGCGAATTATCCCG+AGG | 0.693717 | 8.1:+40080482 | MS.gene009164:CDS |
TGACCGGTAATTGGTCCTTG+AGG | 0.703451 | 8.1:-40083169 | None:intergenic |
GGATCGATGGGAGAAAATCG+CGG | 0.708384 | 8.1:+40080512 | MS.gene009164:CDS |
AAGTATATCAAGGTACAGTG+TGG | 0.727880 | 8.1:+40083009 | MS.gene009164:CDS |
GCACAAAACCAGATTCAATG+TGG | 0.730016 | 8.1:-40080602 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATATATTTAAATAAAATAA+AGG | - | chr8.1:40081067-40081086 | None:intergenic | 0.0% |
!! | ACTAAAATCATATTTAAATA+CGG | - | chr8.1:40080777-40080796 | None:intergenic | 10.0% |
!!! | ATCTTGTAAATTTTTTTTAT+TGG | + | chr8.1:40080827-40080846 | MS.gene009164:intron | 10.0% |
!!! | TTAATAATTATAGTGTTTTT+TGG | - | chr8.1:40081019-40081038 | None:intergenic | 10.0% |
!! | AATCTAAACAAAAAAACTTA+GGG | + | chr8.1:40080984-40081003 | MS.gene009164:intron | 15.0% |
!! | TATTTAAATATATACTCTTG+AGG | + | chr8.1:40081073-40081092 | MS.gene009164:intron | 15.0% |
!!! | TATAAAAACTTTTCTAACAT+GGG | + | chr8.1:40082595-40082614 | MS.gene009164:intron | 15.0% |
!!! | TTCATTGATGTTTTAATTTT+AGG | - | chr8.1:40081914-40081933 | None:intergenic | 15.0% |
!! | AAAACATCAATGAAAATGTA+TGG | + | chr8.1:40081920-40081939 | MS.gene009164:intron | 20.0% |
!! | AAACATCAATGAAAATGTAT+GGG | + | chr8.1:40081921-40081940 | MS.gene009164:intron | 20.0% |
!! | ACACTATAATTATTAATTGC+AGG | + | chr8.1:40081023-40081042 | MS.gene009164:intron | 20.0% |
!! | ATAAAACTATGGATTTAATG+AGG | + | chr8.1:40081581-40081600 | MS.gene009164:intron | 20.0% |
!! | CACTATAATTATTAATTGCA+GGG | + | chr8.1:40081024-40081043 | MS.gene009164:intron | 20.0% |
!! | GAATCTAAACAAAAAAACTT+AGG | + | chr8.1:40080983-40081002 | MS.gene009164:intron | 20.0% |
!! | GAATGAAGTAAATAAAACTA+TGG | + | chr8.1:40081570-40081589 | MS.gene009164:intron | 20.0% |
!! | GATATGAATGATTAAAATGA+TGG | + | chr8.1:40081226-40081245 | MS.gene009164:intron | 20.0% |
!! | TTGGTAAATACTGATAAATA+AGG | + | chr8.1:40082637-40082656 | MS.gene009164:intron | 20.0% |
!! | TTTGAAAAAGAATCATAATC+TGG | - | chr8.1:40080633-40080652 | None:intergenic | 20.0% |
!!! | GTAAGTTCTAATAAATACAT+TGG | - | chr8.1:40081716-40081735 | None:intergenic | 20.0% |
!!! | GTATAAAAACTTTTCTAACA+TGG | + | chr8.1:40082594-40082613 | MS.gene009164:intron | 20.0% |
!!! | TTTTAGGATGTTTTAATTCT+AGG | - | chr8.1:40081898-40081917 | None:intergenic | 20.0% |
!!! | TTTTTTAAGCTTATATGTGT+CGG | + | chr8.1:40081097-40081116 | MS.gene009164:intron | 20.0% |
! | AAAACCAAAAAGATCTGATA+GGG | - | chr8.1:40082800-40082819 | None:intergenic | 25.0% |
! | AAAGTTTGAATTAGGAAGTT+TGG | + | chr8.1:40082618-40082637 | MS.gene009164:intron | 25.0% |
! | AACATCAATGAAAATGTATG+GGG | + | chr8.1:40081922-40081941 | MS.gene009164:intron | 25.0% |
! | AATTGCAGACATTAGTTATA+TGG | + | chr8.1:40082860-40082879 | MS.gene009164:intron | 25.0% |
! | AGACTTTGATACATTGATAT+AGG | + | chr8.1:40082109-40082128 | MS.gene009164:intron | 25.0% |
! | GATAAATAAGGACTAGAATT+GGG | + | chr8.1:40082649-40082668 | MS.gene009164:intron | 25.0% |
! | GATGTTACCTTTGTAAAAAA+TGG | + | chr8.1:40083133-40083152 | MS.gene009164:CDS | 25.0% |
! | TAAAACCAAAAAGATCTGAT+AGG | - | chr8.1:40082801-40082820 | None:intergenic | 25.0% |
! | TAGGATATTGTGTTAGTATT+AGG | - | chr8.1:40082031-40082050 | None:intergenic | 25.0% |
! | TAGTAGGATTAAATAGTGTT+GGG | + | chr8.1:40081763-40081782 | MS.gene009164:intron | 25.0% |
! | TGATAAATAAGGACTAGAAT+TGG | + | chr8.1:40082648-40082667 | MS.gene009164:intron | 25.0% |
! | TGTAATAAATTCTTCTGATG+TGG | + | chr8.1:40081679-40081698 | MS.gene009164:intron | 25.0% |
! | TGTTACTGATAATCATCTAA+TGG | - | chr8.1:40082838-40082857 | None:intergenic | 25.0% |
!! | AGATCCGTTGAAAAATTTTA+AGG | - | chr8.1:40081445-40081464 | None:intergenic | 25.0% |
!! | TTAGTAACTTTTCCAAAGAT+TGG | - | chr8.1:40082210-40082229 | None:intergenic | 25.0% |
!! | TTGACTAAATTTAGAGTTAC+TGG | + | chr8.1:40082491-40082510 | MS.gene009164:intron | 25.0% |
!! | TTTTACTAAACCATTGTATC+TGG | + | chr8.1:40081503-40081522 | MS.gene009164:intron | 25.0% |
!!! | AAACACAGAAGTTTTTTACT+AGG | + | chr8.1:40082689-40082708 | MS.gene009164:intron | 25.0% |
!!! | AATGTCTCCATTTTTTACAA+AGG | - | chr8.1:40083143-40083162 | None:intergenic | 25.0% |
!!! | CAACCATTTTTGAATTTACT+GGG | + | chr8.1:40080957-40080976 | MS.gene009164:intron | 25.0% |
!!! | TAGCATTTATCTAAGGTTTT+AGG | + | chr8.1:40081544-40081563 | MS.gene009164:intron | 25.0% |
!!! | TATTTTCAAGTTTGTTGAAC+AGG | + | chr8.1:40082942-40082961 | MS.gene009164:intron | 25.0% |
!!! | TGTGCCTTAAAATTTTTCAA+CGG | + | chr8.1:40081438-40081457 | MS.gene009164:intron | 25.0% |
AAAAAAACGCTATAGTTGCA+AGG | - | chr8.1:40080800-40080819 | None:intergenic | 30.0% | |
AACATGGGAAAGTTTGAATT+AGG | + | chr8.1:40082610-40082629 | MS.gene009164:intron | 30.0% | |
AATGTAGAACAATGTATTGC+TGG | + | chr8.1:40082276-40082295 | MS.gene009164:intron | 30.0% | |
AATGTATCAAAGTCTAAACG+AGG | - | chr8.1:40082104-40082123 | None:intergenic | 30.0% | |
ACAAACCACTAAAATCATCA+AGG | - | chr8.1:40082004-40082023 | None:intergenic | 30.0% | |
ACTTACTACACTTCTAATGA+CGG | + | chr8.1:40081730-40081749 | MS.gene009164:intron | 30.0% | |
ATAAATACATTGGATCACAG+AGG | - | chr8.1:40081706-40081725 | None:intergenic | 30.0% | |
ATATCAGATCTGTGAAACAA+TGG | + | chr8.1:40082229-40082248 | MS.gene009164:intron | 30.0% | |
ATATCAGTATCGTCAAATAG+CGG | - | chr8.1:40081396-40081415 | None:intergenic | 30.0% | |
ATCTGTGAAACAATGGTATT+AGG | + | chr8.1:40082236-40082255 | MS.gene009164:intron | 30.0% | |
CAAATGCCAATATCATTTAC+TGG | + | chr8.1:40082331-40082350 | MS.gene009164:intron | 30.0% | |
CTAAACAAAAAAACTTAGGG+AGG | + | chr8.1:40080987-40081006 | MS.gene009164:intron | 30.0% | |
CTAGTAGGATTAAATAGTGT+TGG | + | chr8.1:40081762-40081781 | MS.gene009164:intron | 30.0% | |
TAATTCAAATGCATGCTTCA+CGG | - | chr8.1:40081867-40081886 | None:intergenic | 30.0% | |
TCAGAAATACAAAATTCGTC+AGG | + | chr8.1:40083066-40083085 | MS.gene009164:CDS | 30.0% | |
TGAAAGAGAAGAAAGAAAGA+AGG | + | chr8.1:40083095-40083114 | MS.gene009164:CDS | 30.0% | |
! | CAAAGCATTTGAAAATGCAT+TGG | + | chr8.1:40080467-40080486 | MS.gene009164:CDS | 30.0% |
! | CATTTTTGAATTTACTGGGA+CGG | + | chr8.1:40080961-40080980 | MS.gene009164:intron | 30.0% |
! | TCACGTGATGTGATTTTATT+GGG | + | chr8.1:40080908-40080927 | MS.gene009164:intron | 30.0% |
! | TGTTTTGCTGGATTTTGTTA+TGG | + | chr8.1:40082177-40082196 | MS.gene009164:intron | 30.0% |
!! | AACTTCCTTGATGATTTTAG+TGG | + | chr8.1:40081996-40082015 | MS.gene009164:intron | 30.0% |
!! | GAATTTTGTATTTCTGAGCA+TGG | - | chr8.1:40083063-40083082 | None:intergenic | 30.0% |
!! | GCAACCATTTTTGAATTTAC+TGG | + | chr8.1:40080956-40080975 | MS.gene009164:intron | 30.0% |
!! | GTTTTGCTGGATTTTGTTAT+GGG | + | chr8.1:40082178-40082197 | MS.gene009164:intron | 30.0% |
!!! | AATCTCTTCTAAAGTTTTCC+CGG | - | chr8.1:40080547-40080566 | None:intergenic | 30.0% |
!!! | ACAGAAGTTTTTTACTAGGT+TGG | + | chr8.1:40082693-40082712 | MS.gene009164:intron | 30.0% |
AAACAGTCACAGTAGTTAAC+TGG | - | chr8.1:40081486-40081505 | None:intergenic | 35.0% | |
AAAGAATCATAATCTGGCAG+AGG | - | chr8.1:40080627-40080646 | None:intergenic | 35.0% | |
AAAGGTAACATCATGTATGC+TGG | - | chr8.1:40083125-40083144 | None:intergenic | 35.0% | |
AAGCTAACATCAGGAACTAA+AGG | - | chr8.1:40080882-40080901 | None:intergenic | 35.0% | |
AAGTATATCAAGGTACAGTG+TGG | + | chr8.1:40083009-40083028 | MS.gene009164:CDS | 35.0% | |
AATCACAATCCCTTCTAACA+TGG | - | chr8.1:40081645-40081664 | None:intergenic | 35.0% | |
ACTAAGATCCAGCAAAAAGA+TGG | - | chr8.1:40082576-40082595 | None:intergenic | 35.0% | |
AGAACATCTAACATCGTTGT+AGG | - | chr8.1:40082050-40082069 | None:intergenic | 35.0% | |
ATCCTTGCACAAATTGTCTA+TGG | - | chr8.1:40082380-40082399 | None:intergenic | 35.0% | |
ATTGCGAAAAATAGCCATGA+CGG | + | chr8.1:40081134-40081153 | MS.gene009164:intron | 35.0% | |
CAGTACGTAGCATTTATCTA+AGG | + | chr8.1:40081537-40081556 | MS.gene009164:intron | 35.0% | |
CGTCATATCCAATCAGTAAA+GGG | + | chr8.1:40081183-40081202 | MS.gene009164:intron | 35.0% | |
CGTCCCAGTAAATTCAAAAA+TGG | - | chr8.1:40080963-40080982 | None:intergenic | 35.0% | |
CTTAGATAAATGCTACGTAC+TGG | - | chr8.1:40081539-40081558 | None:intergenic | 35.0% | |
GACTATTAGTTACTTGTCAG+AGG | - | chr8.1:40082778-40082797 | None:intergenic | 35.0% | |
GATATCAACCACATTGAATC+TGG | + | chr8.1:40080594-40080613 | MS.gene009164:CDS | 35.0% | |
GTGAAGCATGCATTTGAATT+AGG | + | chr8.1:40081866-40081885 | MS.gene009164:intron | 35.0% | |
GTGCTACACTATTAAGTACA+AGG | - | chr8.1:40081313-40081332 | None:intergenic | 35.0% | |
TAAAGGAGAACCAGATACAA+TGG | - | chr8.1:40081516-40081535 | None:intergenic | 35.0% | |
TAGTTACTTGTCAGAGGTAA+TGG | - | chr8.1:40082772-40082791 | None:intergenic | 35.0% | |
TATGGGTTTACTCCAATCTT+TGG | + | chr8.1:40082195-40082214 | MS.gene009164:intron | 35.0% | |
TTCCATCATCCATGTTAGAA+GGG | + | chr8.1:40081633-40081652 | MS.gene009164:intron | 35.0% | |
! | AGTTCCTGATGTTAGCTTAT+TGG | + | chr8.1:40080884-40080903 | MS.gene009164:intron | 35.0% |
! | ATTGTAGCCAGTGTTATTGA+TGG | - | chr8.1:40081267-40081286 | None:intergenic | 35.0% |
! | CCTTTACTGATTGGATATGA+CGG | - | chr8.1:40081185-40081204 | None:intergenic | 35.0% |
! | CTTCGAGTTCTTATCAAGAA+CGG | + | chr8.1:40080706-40080725 | MS.gene009164:CDS | 35.0% |
! | GGATTGTGGTAACAGATTTT+TGG | + | chr8.1:40081155-40081174 | MS.gene009164:intron | 35.0% |
! | GTCACGTGATGTGATTTTAT+TGG | + | chr8.1:40080907-40080926 | MS.gene009164:intron | 35.0% |
! | GTTCCTGATGTTAGCTTATT+GGG | + | chr8.1:40080885-40080904 | MS.gene009164:intron | 35.0% |
! | TAAATGCTACGTACTGGTAA+AGG | - | chr8.1:40081533-40081552 | None:intergenic | 35.0% |
! | TAGTCCCTATCAGATCTTTT+TGG | + | chr8.1:40082793-40082812 | MS.gene009164:intron | 35.0% |
! | TTGTAGCCAGTGTTATTGAT+GGG | - | chr8.1:40081266-40081285 | None:intergenic | 35.0% |
!! | TTGAACAGGCTATTTCTTCA+AGG | + | chr8.1:40082956-40082975 | MS.gene009164:intron | 35.0% |
!! | TTTTTACTAGGTTGGAAGCT+CGG | + | chr8.1:40082701-40082720 | MS.gene009164:intron | 35.0% |
!!! | AAGGGCATCATAGTGTTTTA+TGG | + | chr8.1:40081201-40081220 | MS.gene009164:intron | 35.0% |
!!! | ATCTCTTCTAAAGTTTTCCC+GGG | - | chr8.1:40080546-40080565 | None:intergenic | 35.0% |
AAATCCTAGTGGTCCTTGAT+TGG | + | chr8.1:40081803-40081822 | MS.gene009164:intron | 40.0% | |
AAGAGTTCAACAAAGCGTAC+TGG | + | chr8.1:40080651-40080670 | MS.gene009164:CDS | 40.0% | |
AATATCATTTACTGGCGTGG+CGG | + | chr8.1:40082339-40082358 | MS.gene009164:intron | 40.0% | |
AATGTTGCAGTGAGTTACAC+TGG | + | chr8.1:40082152-40082171 | MS.gene009164:intron | 40.0% | |
AGAGATTAAGCGTCACTATG+TGG | + | chr8.1:40080560-40080579 | MS.gene009164:CDS | 40.0% | |
AGTGTAACTCACTGCAACAT+TGG | - | chr8.1:40082153-40082172 | None:intergenic | 40.0% | |
ATCCCTTCTAACATGGATGA+TGG | - | chr8.1:40081638-40081657 | None:intergenic | 40.0% | |
CACCATAGACAATTTGTGCA+AGG | + | chr8.1:40082375-40082394 | MS.gene009164:intron | 40.0% | |
CCGTCATATCCAATCAGTAA+AGG | + | chr8.1:40081182-40081201 | MS.gene009164:intron | 40.0% | |
CTATGATGCCCTTTACTGAT+TGG | - | chr8.1:40081194-40081213 | None:intergenic | 40.0% | |
CTTGCACAAATTGTCTATGG+TGG | - | chr8.1:40082377-40082396 | None:intergenic | 40.0% | |
GCACAAAACCAGATTCAATG+TGG | - | chr8.1:40080605-40080624 | None:intergenic | 40.0% | |
GTTCCATCATCCATGTTAGA+AGG | + | chr8.1:40081632-40081651 | MS.gene009164:intron | 40.0% | |
TCCAAATGACCTACCAATCA+AGG | - | chr8.1:40081819-40081838 | None:intergenic | 40.0% | |
TCCTTGATTGGTAGGTCATT+TGG | + | chr8.1:40081815-40081834 | MS.gene009164:intron | 40.0% | |
TCTTATCAAGAACGGCGAAA+GGG | + | chr8.1:40080714-40080733 | MS.gene009164:CDS | 40.0% | |
TGACCCAATAAGCTAACATC+AGG | - | chr8.1:40080891-40080910 | None:intergenic | 40.0% | |
TTCTTATCAAGAACGGCGAA+AGG | + | chr8.1:40080713-40080732 | MS.gene009164:CDS | 40.0% | |
TTGATTGGTAGGTCATTTGG+AGG | + | chr8.1:40081818-40081837 | MS.gene009164:intron | 40.0% | |
! | ATAGTGTTGGGTAAAGCGTT+TGG | + | chr8.1:40081775-40081794 | MS.gene009164:intron | 40.0% |
! | GGCATCATAGTGTTTTATGG+TGG | + | chr8.1:40081204-40081223 | MS.gene009164:intron | 40.0% |
! | TAGTGTTGGGTAAAGCGTTT+GGG | + | chr8.1:40081776-40081795 | MS.gene009164:intron | 40.0% |
! | TGTAGCCAGTGTTATTGATG+GGG | - | chr8.1:40081265-40081284 | None:intergenic | 40.0% |
!! | AAAATAGCCATGACGGATTG+TGG | + | chr8.1:40081141-40081160 | MS.gene009164:intron | 40.0% |
!! | ATGTGTCGGTGTTACAATTG+CGG | + | chr8.1:40081111-40081130 | MS.gene009164:intron | 40.0% |
!! | GTTACACTGGATTGTTTTGC+TGG | + | chr8.1:40082165-40082184 | MS.gene009164:intron | 40.0% |
!!! | GGCTGCAATGCTGTTTTTTA+CGG | + | chr8.1:40082421-40082440 | MS.gene009164:intron | 40.0% |
!!! | TGCAATGCTGTTTTTTACGG+CGG | + | chr8.1:40082424-40082443 | MS.gene009164:intron | 40.0% |
AGCAGAATTGCTTGCTTGAC+CGG | - | chr8.1:40083188-40083207 | None:intergenic | 45.0% | |
AGGCACAGCTAACATAGCTT+AGG | - | chr8.1:40081425-40081444 | None:intergenic | 45.0% | |
CTATGTTCATCTTCCGTCCA+AGG | - | chr8.1:40080744-40080763 | None:intergenic | 45.0% | |
CTTGGACGGAAGATGAACAT+AGG | + | chr8.1:40080742-40080761 | MS.gene009164:CDS | 45.0% | |
CTTTCCCCCATCAATAACAC+TGG | + | chr8.1:40081257-40081276 | MS.gene009164:intron | 45.0% | |
GCCAATATCATTTACTGGCG+TGG | + | chr8.1:40082336-40082355 | MS.gene009164:intron | 45.0% | |
GCCACGCCAGTAAATGATAT+TGG | - | chr8.1:40082340-40082359 | None:intergenic | 45.0% | |
GTAACTCACTGCAACATTGG+AGG | - | chr8.1:40082150-40082169 | None:intergenic | 45.0% | |
GTGACTGGCGAAGTATATCA+AGG | + | chr8.1:40082999-40083018 | MS.gene009164:CDS | 45.0% | |
TCTGTTACCACAATCCGTCA+TGG | - | chr8.1:40081151-40081170 | None:intergenic | 45.0% | |
TGAAGGAGGAGCTGTGAAAA+GGG | + | chr8.1:40080674-40080693 | MS.gene009164:CDS | 45.0% | |
TTGCTTGCTTGACCGGTAAT+TGG | - | chr8.1:40083181-40083200 | None:intergenic | 45.0% | |
! | ACGAGTCTCCATCTTTTTGC+TGG | + | chr8.1:40082565-40082584 | MS.gene009164:intron | 45.0% |
! | AGTGTTGGGTAAAGCGTTTG+GGG | + | chr8.1:40081777-40081796 | MS.gene009164:intron | 45.0% |
! | GTAGCCAGTGTTATTGATGG+GGG | - | chr8.1:40081264-40081283 | None:intergenic | 45.0% |
! | GTTTGGGGTTCAAATCCTAG+TGG | + | chr8.1:40081792-40081811 | MS.gene009164:intron | 45.0% |
! | TCAACAAAGCGTACTGGTGA+AGG | + | chr8.1:40080657-40080676 | MS.gene009164:CDS | 45.0% |
! | TGACGGTTGACTCAACTAGT+AGG | + | chr8.1:40081747-40081766 | MS.gene009164:intron | 45.0% |
! | TTGTGCAAGGATGCTTGCTA+TGG | + | chr8.1:40082388-40082407 | MS.gene009164:intron | 45.0% |
!! | TGTGCAAGGATGCTTGCTAT+GGG | + | chr8.1:40082389-40082408 | MS.gene009164:intron | 45.0% |
AAAATCGCGGCTGATGTACC+CGG | + | chr8.1:40080525-40080544 | MS.gene009164:CDS | 50.0% | |
AAATGGGTAGCAGCTGTGAG+TGG | + | chr8.1:40080430-40080449 | MS.gene009164:CDS | 50.0% | |
AGCTGTGAAAAGGGGAGCTA+AGG | + | chr8.1:40080683-40080702 | MS.gene009164:CDS | 50.0% | |
CAGTTTCGTCGACGTCAGAA+TGG | - | chr8.1:40082456-40082475 | None:intergenic | 50.0% | |
CCTACCAATCAAGGACCACT+AGG | - | chr8.1:40081810-40081829 | None:intergenic | 50.0% | |
CCTAGTGGTCCTTGATTGGT+AGG | + | chr8.1:40081807-40081826 | MS.gene009164:intron | 50.0% | |
GAAGGAGGAGCTGTGAAAAG+GGG | + | chr8.1:40080675-40080694 | MS.gene009164:CDS | 50.0% | |
GCACCTCAAGGACCAATTAC+CGG | + | chr8.1:40083166-40083185 | MS.gene009164:CDS | 50.0% | |
GGAGACATTTCAGCACCTCA+AGG | + | chr8.1:40083154-40083173 | MS.gene009164:CDS | 50.0% | |
GGATCGATGGGAGAAAATCG+CGG | + | chr8.1:40080512-40080531 | MS.gene009164:CDS | 50.0% | |
GTGAAGGAGGAGCTGTGAAA+AGG | + | chr8.1:40080673-40080692 | MS.gene009164:CDS | 50.0% | |
TCGTCAAATAGCGGCTGTAG+TGG | - | chr8.1:40081387-40081406 | None:intergenic | 50.0% | |
TGACCGGTAATTGGTCCTTG+AGG | - | chr8.1:40083172-40083191 | None:intergenic | 50.0% | |
TGACGTCGACGAAACTGATC+AGG | + | chr8.1:40082459-40082478 | MS.gene009164:intron | 50.0% | |
! | ACAAAGCGTACTGGTGAAGG+AGG | + | chr8.1:40080660-40080679 | MS.gene009164:CDS | 50.0% |
! | TGCATTGGCGAATTATCCCG+AGG | + | chr8.1:40080482-40080501 | MS.gene009164:CDS | 50.0% |
!! | CAGGCTATTTCTTCAAGGCC+TGG | + | chr8.1:40082961-40082980 | MS.gene009164:intron | 50.0% |
!! | GCATGGCTTGCTACTTGTGT+AGG | - | chr8.1:40083046-40083065 | None:intergenic | 50.0% |
!! | GTGCAAGGATGCTTGCTATG+GGG | + | chr8.1:40082390-40082409 | MS.gene009164:intron | 50.0% |
!! | TGCAAGGATGCTTGCTATGG+GGG | + | chr8.1:40082391-40082410 | MS.gene009164:intron | 50.0% |
AAATCGCGGCTGATGTACCC+GGG | + | chr8.1:40080526-40080545 | MS.gene009164:CDS | 55.0% | |
AAGGCCTGGAGAACCATGGA+TGG | + | chr8.1:40082975-40082994 | MS.gene009164:CDS | 55.0% | |
AGAACCATGGATGGGGTGAC+TGG | + | chr8.1:40082984-40083003 | MS.gene009164:CDS | 55.0% | |
AGGCCTGGAGAACCATGGAT+GGG | + | chr8.1:40082976-40082995 | MS.gene009164:CDS | 55.0% | |
CTTCAAGGCCTGGAGAACCA+TGG | + | chr8.1:40082971-40082990 | MS.gene009164:CDS | 55.0% | |
GAATTATCCCGAGGACGCTG+TGG | + | chr8.1:40080491-40080510 | MS.gene009164:CDS | 55.0% | |
!! | AACGGCGAAAGGGTGTTCCT+TGG | + | chr8.1:40080724-40080743 | MS.gene009164:CDS | 55.0% |
!! | GCGAAAGGGTGTTCCTTGGA+CGG | + | chr8.1:40080728-40080747 | MS.gene009164:CDS | 55.0% |
!! | GCTTGCTATGGGGGTGCTAT+CGG | + | chr8.1:40082400-40082419 | MS.gene009164:intron | 55.0% |
CACCCCATCCATGGTTCTCC+AGG | - | chr8.1:40082982-40083001 | None:intergenic | 60.0% | |
CATCGATCCACAGCGTCCTC+GGG | - | chr8.1:40080501-40080520 | None:intergenic | 60.0% | |
CCATCGATCCACAGCGTCCT+CGG | - | chr8.1:40080502-40080521 | None:intergenic | 60.0% | |
CGAGGACGCTGTGGATCGAT+GGG | + | chr8.1:40080500-40080519 | MS.gene009164:CDS | 60.0% | |
GGCCTGGAGAACCATGGATG+GGG | + | chr8.1:40082977-40082996 | MS.gene009164:CDS | 60.0% | |
TTCGCCAGTCACCCCATCCA+TGG | - | chr8.1:40082991-40083010 | None:intergenic | 60.0% | |
CCGAGGACGCTGTGGATCGA+TGG | + | chr8.1:40080499-40080518 | MS.gene009164:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 40080423 | 40083211 | 40080423 | ID=MS.gene009164 |
chr8.1 | mRNA | 40080423 | 40083211 | 40080423 | ID=MS.gene009164.t1;Parent=MS.gene009164 |
chr8.1 | exon | 40080423 | 40080763 | 40080423 | ID=MS.gene009164.t1.exon1;Parent=MS.gene009164.t1 |
chr8.1 | CDS | 40080423 | 40080763 | 40080423 | ID=cds.MS.gene009164.t1;Parent=MS.gene009164.t1 |
chr8.1 | exon | 40082964 | 40083211 | 40082964 | ID=MS.gene009164.t1.exon2;Parent=MS.gene009164.t1 |
chr8.1 | CDS | 40082964 | 40083211 | 40082964 | ID=cds.MS.gene009164.t1;Parent=MS.gene009164.t1 |
Gene Sequence |
Protein sequence |