AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene009164


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009164.t1 MTR_8g063600 96.429 196 7 0 1 196 1 196 3.11e-142 398
MS.gene009164.t1 MTR_8g063870 67.179 195 50 4 1 195 1 181 9.91e-82 244
MS.gene009164.t1 MTR_4g111975 48.661 224 78 6 6 194 4 225 1.46e-59 188
MS.gene009164.t1 MTR_1g111830 54.444 180 76 3 8 183 22 199 4.85e-55 175
MS.gene009164.t1 MTR_5g081860 50.000 178 87 1 8 183 25 202 5.54e-54 173
MS.gene009164.t1 MTR_3g462790 47.872 188 88 3 2 181 35 220 1.03e-53 174
MS.gene009164.t1 MTR_5g069710 48.619 181 82 4 2 175 23 199 1.78e-52 170
MS.gene009164.t1 MTR_7g067080 47.283 184 86 2 9 183 34 215 3.28e-50 165
MS.gene009164.t1 MTR_1g033600 56.250 128 42 1 1 114 3 130 7.86e-43 140
MS.gene009164.t1 MTR_1g033620 69.737 76 21 1 121 196 20 93 2.85e-28 106
MS.gene009164.t1 MTR_5g075760 39.779 181 89 8 5 177 8 176 1.69e-26 101
MS.gene009164.t1 MTR_6g092540 67.568 74 22 1 100 173 91 162 7.68e-26 101
MS.gene009164.t1 MTR_5g075790 37.500 176 99 6 5 177 17 184 1.09e-25 99.4
MS.gene009164.t1 MTR_5g088010 59.740 77 30 1 102 177 56 132 1.90e-25 99.4
MS.gene009164.t1 MTR_4g100630 60.256 78 29 1 95 172 84 159 2.10e-25 100
MS.gene009164.t1 MTR_2g100930 62.195 82 25 2 95 172 94 173 3.17e-25 100
MS.gene009164.t1 MTR_8g101650 63.014 73 24 1 100 172 99 168 8.52e-25 98.2
MS.gene009164.t1 MTR_5g088060 63.158 76 26 2 103 177 270 344 1.52e-23 97.1
MS.gene009164.t1 MTR_5g488160 63.158 76 26 2 103 177 270 344 1.52e-23 97.1
MS.gene009164.t1 MTR_5g027570 54.430 79 36 0 102 180 88 166 3.05e-23 93.2
MS.gene009164.t1 MTR_1g022290 56.522 69 30 0 4 72 1 69 3.86e-22 86.3
MS.gene009164.t1 MTR_5g037080 60.759 79 29 1 95 173 91 167 9.01e-21 87.8
MS.gene009164.t1 MTR_3g116720 52.308 65 31 0 10 74 16 80 2.22e-20 81.3
MS.gene009164.t1 MTR_4g107230 71.154 52 15 0 100 151 78 129 4.48e-20 85.5
MS.gene009164.t1 MTR_3g111880 53.623 69 32 0 4 72 1 69 8.23e-20 80.1
MS.gene009164.t1 MTR_3g104370 50.000 84 41 1 96 178 81 164 1.23e-19 83.6
MS.gene009164.t1 MTR_5g027550 42.593 108 59 2 74 180 47 152 1.02e-18 80.9
MS.gene009164.t1 MTR_0036s0260 54.412 68 29 1 106 173 28 93 6.45e-18 78.6
MS.gene009164.t1 MTR_5g020170 52.941 68 32 0 5 72 14 81 8.87e-18 75.1
MS.gene009164.t1 MTR_7g089210 52.174 69 33 0 14 82 16 84 1.93e-17 73.9
MS.gene009164.t1 MTR_2g090305 54.412 68 29 1 106 173 28 93 1.00e-16 74.7
MS.gene009164.t1 MTR_6g004250 50.000 72 36 0 1 72 1 72 1.32e-16 71.6
MS.gene009164.t1 MTR_4g015130 60.000 60 22 1 116 175 3 60 1.79e-16 71.2
MS.gene009164.t1 MTR_3g013440 49.315 73 36 1 1 72 1 73 7.93e-16 69.7
MS.gene009164.t1 MTR_3g070110 33.939 165 95 6 17 173 9 167 3.78e-14 68.6
MS.gene009164.t1 MTR_1g048660 45.455 77 38 2 107 182 13 86 4.70e-14 65.5
MS.gene009164.t1 MTR_3g111920 45.312 64 33 2 10 72 3 65 6.98e-13 62.0
MS.gene009164.t1 MTR_8g077360 38.356 73 44 1 7 79 2 73 7.20e-13 61.6
MS.gene009164.t1 MTR_8g077380 38.889 72 43 1 7 78 2 72 9.43e-13 61.2
MS.gene009164.t1 MTR_8g077390 38.889 72 43 1 7 78 2 72 9.43e-13 61.2
MS.gene009164.t1 MTR_1g083180 45.679 81 42 2 108 187 63 142 2.21e-12 63.2
MS.gene009164.t1 MTR_8g077420 43.284 67 35 2 4 70 1 64 5.64e-12 59.3
MS.gene009164.t1 MTR_5g020540 47.541 61 31 1 10 70 4 63 1.85e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009164.t1 AT5G08520 59.000 200 70 2 1 190 3 200 3.18e-74 226
MS.gene009164.t1 AT5G23650 49.261 203 90 3 3 194 6 206 3.64e-53 173
MS.gene009164.t1 AT5G58900 47.253 182 83 2 5 175 29 208 9.74e-52 168
MS.gene009164.t1 AT5G04760 52.941 170 75 3 6 175 2 166 1.25e-51 165
MS.gene009164.t1 AT2G38090 47.826 184 78 3 8 175 27 208 1.32e-51 168
MS.gene009164.t1 AT1G49010 47.475 198 72 4 10 177 8 203 1.82e-51 168
MS.gene009164.t1 AT5G05790 46.448 183 90 4 7 183 28 208 3.00e-48 159
MS.gene009164.t1 AT5G05790 46.448 183 90 4 7 183 28 208 3.00e-48 159
MS.gene009164.t1 AT3G11280 50.610 164 77 2 10 173 33 192 5.20e-48 157
MS.gene009164.t1 AT3G11280 50.610 164 77 2 10 173 33 192 5.20e-48 157
MS.gene009164.t1 AT5G01200 44.086 186 82 5 10 175 30 213 1.85e-42 144
MS.gene009164.t1 AT3G10580 42.222 180 79 5 10 183 8 168 2.00e-37 130
MS.gene009164.t1 AT3G10580 42.222 180 79 5 10 183 8 168 5.02e-37 130
MS.gene009164.t1 AT4G09450 42.105 171 85 3 4 174 1 157 2.96e-34 120
MS.gene009164.t1 AT5G47390 57.732 97 39 1 84 180 74 168 9.60e-28 107
MS.gene009164.t1 AT5G56840 59.740 77 30 1 101 177 86 161 2.18e-23 93.6
MS.gene009164.t1 AT3G10590 35.829 187 93 8 4 174 1 176 8.03e-23 91.3
MS.gene009164.t1 AT1G70000 58.228 79 31 1 95 173 87 163 8.98e-21 87.0
MS.gene009164.t1 AT1G70000 58.228 79 31 1 95 173 87 163 8.98e-21 87.0
MS.gene009164.t1 AT5G61620 52.439 82 37 1 93 174 95 174 1.04e-20 87.8
MS.gene009164.t1 AT3G16350 61.429 70 19 1 84 153 123 184 1.41e-20 88.2
MS.gene009164.t1 AT4G39250 47.368 76 40 0 10 85 14 89 2.43e-20 82.0
MS.gene009164.t1 AT1G75250 49.333 75 38 0 5 79 7 81 7.27e-20 80.5
MS.gene009164.t1 AT1G75250 49.333 75 38 0 5 79 7 81 2.99e-19 79.7
MS.gene009164.t1 AT1G74840 70.588 51 15 0 101 151 91 141 2.62e-18 80.1
MS.gene009164.t1 AT1G74840 70.588 51 15 0 101 151 91 141 3.21e-18 80.5
MS.gene009164.t1 AT1G19000 61.667 60 23 0 92 151 88 147 4.50e-18 80.1
MS.gene009164.t1 AT1G19000 61.667 60 23 0 92 151 88 147 4.50e-18 80.1
MS.gene009164.t1 AT2G21650 50.000 72 36 0 10 81 14 85 2.63e-17 73.9
MS.gene009164.t1 AT2G18328 55.932 59 26 0 14 72 15 73 5.09e-16 70.1
MS.gene009164.t1 AT1G19510 46.377 69 37 0 14 82 16 84 5.24e-15 68.2

Find 51 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCTTGCTTGACCGGTAAT+TGG 0.261142 8.1:-40083178 None:intergenic
TCACAGAACAATGGATGAAA+TGG 0.332083 8.1:+40080413 None:intergenic
GATATCAACCACATTGAATC+TGG 0.363693 8.1:+40080594 MS.gene009164:CDS
CACCCCATCCATGGTTCTCC+AGG 0.402855 8.1:-40082979 None:intergenic
CCATCGATCCACAGCGTCCT+CGG 0.411794 8.1:-40080499 None:intergenic
TTGAACAGGCTATTTCTTCA+AGG 0.422344 8.1:+40082956 MS.gene009164:intron
AGCAGAATTGCTTGCTTGAC+CGG 0.425370 8.1:-40083185 None:intergenic
GCACCTCAAGGACCAATTAC+CGG 0.448210 8.1:+40083166 MS.gene009164:CDS
CAGGCTATTTCTTCAAGGCC+TGG 0.460201 8.1:+40082961 MS.gene009164:intron
GTGAAGGAGGAGCTGTGAAA+AGG 0.473544 8.1:+40080673 MS.gene009164:CDS
CACAGAACAATGGATGAAAT+GGG 0.481775 8.1:+40080414 None:intergenic
TGAAGGAGGAGCTGTGAAAA+GGG 0.482163 8.1:+40080674 MS.gene009164:CDS
AGAACCATGGATGGGGTGAC+TGG 0.483144 8.1:+40082984 MS.gene009164:CDS
TTCTTATCAAGAACGGCGAA+AGG 0.494765 8.1:+40080713 MS.gene009164:CDS
AACGGCGAAAGGGTGTTCCT+TGG 0.495446 8.1:+40080724 MS.gene009164:CDS
CATCGATCCACAGCGTCCTC+GGG 0.504680 8.1:-40080498 None:intergenic
AGCTGTGAAAAGGGGAGCTA+AGG 0.515551 8.1:+40080683 MS.gene009164:CDS
TCAGAAATACAAAATTCGTC+AGG 0.519592 8.1:+40083066 MS.gene009164:CDS
AAAGGTAACATCATGTATGC+TGG 0.520807 8.1:-40083122 None:intergenic
AAAATCGCGGCTGATGTACC+CGG 0.524444 8.1:+40080525 MS.gene009164:CDS
CAAAGCATTTGAAAATGCAT+TGG 0.524922 8.1:+40080467 MS.gene009164:CDS
TGAAAGAGAAGAAAGAAAGA+AGG 0.525485 8.1:+40083095 MS.gene009164:CDS
CCGAGGACGCTGTGGATCGA+TGG 0.531444 8.1:+40080499 MS.gene009164:CDS
GCATGGCTTGCTACTTGTGT+AGG 0.536057 8.1:-40083043 None:intergenic
CTATGTTCATCTTCCGTCCA+AGG 0.545058 8.1:-40080741 None:intergenic
AAGAGTTCAACAAAGCGTAC+TGG 0.557383 8.1:+40080651 MS.gene009164:CDS
AAGGCCTGGAGAACCATGGA+TGG 0.559427 8.1:+40082975 MS.gene009164:CDS
TCAACAAAGCGTACTGGTGA+AGG 0.564550 8.1:+40080657 MS.gene009164:CDS
CGAGGACGCTGTGGATCGAT+GGG 0.568594 8.1:+40080500 MS.gene009164:CDS
CTTGGACGGAAGATGAACAT+AGG 0.569094 8.1:+40080742 MS.gene009164:CDS
TTCGCCAGTCACCCCATCCA+TGG 0.577904 8.1:-40082988 None:intergenic
GCGAAAGGGTGTTCCTTGGA+CGG 0.581376 8.1:+40080728 MS.gene009164:CDS
AGGCCTGGAGAACCATGGAT+GGG 0.582995 8.1:+40082976 MS.gene009164:CDS
TCTTATCAAGAACGGCGAAA+GGG 0.585934 8.1:+40080714 MS.gene009164:CDS
AAAGAATCATAATCTGGCAG+AGG 0.587497 8.1:-40080624 None:intergenic
CTTCGAGTTCTTATCAAGAA+CGG 0.593298 8.1:+40080706 MS.gene009164:CDS
AGAGATTAAGCGTCACTATG+TGG 0.598823 8.1:+40080560 MS.gene009164:CDS
CTTCAAGGCCTGGAGAACCA+TGG 0.600275 8.1:+40082971 MS.gene009164:CDS
GTGACTGGCGAAGTATATCA+AGG 0.602104 8.1:+40082999 MS.gene009164:CDS
GGCCTGGAGAACCATGGATG+GGG 0.620882 8.1:+40082977 MS.gene009164:CDS
AAATCGCGGCTGATGTACCC+GGG 0.624584 8.1:+40080526 MS.gene009164:CDS
AAATGGGTAGCAGCTGTGAG+TGG 0.631015 8.1:+40080430 MS.gene009164:CDS
GGAGACATTTCAGCACCTCA+AGG 0.642144 8.1:+40083154 MS.gene009164:CDS
ACAAAGCGTACTGGTGAAGG+AGG 0.643312 8.1:+40080660 MS.gene009164:CDS
GAAGGAGGAGCTGTGAAAAG+GGG 0.644294 8.1:+40080675 MS.gene009164:CDS
GAATTATCCCGAGGACGCTG+TGG 0.679154 8.1:+40080491 MS.gene009164:CDS
TGCATTGGCGAATTATCCCG+AGG 0.693717 8.1:+40080482 MS.gene009164:CDS
TGACCGGTAATTGGTCCTTG+AGG 0.703451 8.1:-40083169 None:intergenic
GGATCGATGGGAGAAAATCG+CGG 0.708384 8.1:+40080512 MS.gene009164:CDS
AAGTATATCAAGGTACAGTG+TGG 0.727880 8.1:+40083009 MS.gene009164:CDS
GCACAAAACCAGATTCAATG+TGG 0.730016 8.1:-40080602 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATTTAAATAAAATAA+AGG - chr8.1:40081067-40081086 None:intergenic 0.0%
!! ACTAAAATCATATTTAAATA+CGG - chr8.1:40080777-40080796 None:intergenic 10.0%
!!! ATCTTGTAAATTTTTTTTAT+TGG + chr8.1:40080827-40080846 MS.gene009164:intron 10.0%
!!! TTAATAATTATAGTGTTTTT+TGG - chr8.1:40081019-40081038 None:intergenic 10.0%
!! AATCTAAACAAAAAAACTTA+GGG + chr8.1:40080984-40081003 MS.gene009164:intron 15.0%
!! TATTTAAATATATACTCTTG+AGG + chr8.1:40081073-40081092 MS.gene009164:intron 15.0%
!!! TATAAAAACTTTTCTAACAT+GGG + chr8.1:40082595-40082614 MS.gene009164:intron 15.0%
!!! TTCATTGATGTTTTAATTTT+AGG - chr8.1:40081914-40081933 None:intergenic 15.0%
!! AAAACATCAATGAAAATGTA+TGG + chr8.1:40081920-40081939 MS.gene009164:intron 20.0%
!! AAACATCAATGAAAATGTAT+GGG + chr8.1:40081921-40081940 MS.gene009164:intron 20.0%
!! ACACTATAATTATTAATTGC+AGG + chr8.1:40081023-40081042 MS.gene009164:intron 20.0%
!! ATAAAACTATGGATTTAATG+AGG + chr8.1:40081581-40081600 MS.gene009164:intron 20.0%
!! CACTATAATTATTAATTGCA+GGG + chr8.1:40081024-40081043 MS.gene009164:intron 20.0%
!! GAATCTAAACAAAAAAACTT+AGG + chr8.1:40080983-40081002 MS.gene009164:intron 20.0%
!! GAATGAAGTAAATAAAACTA+TGG + chr8.1:40081570-40081589 MS.gene009164:intron 20.0%
!! GATATGAATGATTAAAATGA+TGG + chr8.1:40081226-40081245 MS.gene009164:intron 20.0%
!! TTGGTAAATACTGATAAATA+AGG + chr8.1:40082637-40082656 MS.gene009164:intron 20.0%
!! TTTGAAAAAGAATCATAATC+TGG - chr8.1:40080633-40080652 None:intergenic 20.0%
!!! GTAAGTTCTAATAAATACAT+TGG - chr8.1:40081716-40081735 None:intergenic 20.0%
!!! GTATAAAAACTTTTCTAACA+TGG + chr8.1:40082594-40082613 MS.gene009164:intron 20.0%
!!! TTTTAGGATGTTTTAATTCT+AGG - chr8.1:40081898-40081917 None:intergenic 20.0%
!!! TTTTTTAAGCTTATATGTGT+CGG + chr8.1:40081097-40081116 MS.gene009164:intron 20.0%
! AAAACCAAAAAGATCTGATA+GGG - chr8.1:40082800-40082819 None:intergenic 25.0%
! AAAGTTTGAATTAGGAAGTT+TGG + chr8.1:40082618-40082637 MS.gene009164:intron 25.0%
! AACATCAATGAAAATGTATG+GGG + chr8.1:40081922-40081941 MS.gene009164:intron 25.0%
! AATTGCAGACATTAGTTATA+TGG + chr8.1:40082860-40082879 MS.gene009164:intron 25.0%
! AGACTTTGATACATTGATAT+AGG + chr8.1:40082109-40082128 MS.gene009164:intron 25.0%
! GATAAATAAGGACTAGAATT+GGG + chr8.1:40082649-40082668 MS.gene009164:intron 25.0%
! GATGTTACCTTTGTAAAAAA+TGG + chr8.1:40083133-40083152 MS.gene009164:CDS 25.0%
! TAAAACCAAAAAGATCTGAT+AGG - chr8.1:40082801-40082820 None:intergenic 25.0%
! TAGGATATTGTGTTAGTATT+AGG - chr8.1:40082031-40082050 None:intergenic 25.0%
! TAGTAGGATTAAATAGTGTT+GGG + chr8.1:40081763-40081782 MS.gene009164:intron 25.0%
! TGATAAATAAGGACTAGAAT+TGG + chr8.1:40082648-40082667 MS.gene009164:intron 25.0%
! TGTAATAAATTCTTCTGATG+TGG + chr8.1:40081679-40081698 MS.gene009164:intron 25.0%
! TGTTACTGATAATCATCTAA+TGG - chr8.1:40082838-40082857 None:intergenic 25.0%
!! AGATCCGTTGAAAAATTTTA+AGG - chr8.1:40081445-40081464 None:intergenic 25.0%
!! TTAGTAACTTTTCCAAAGAT+TGG - chr8.1:40082210-40082229 None:intergenic 25.0%
!! TTGACTAAATTTAGAGTTAC+TGG + chr8.1:40082491-40082510 MS.gene009164:intron 25.0%
!! TTTTACTAAACCATTGTATC+TGG + chr8.1:40081503-40081522 MS.gene009164:intron 25.0%
!!! AAACACAGAAGTTTTTTACT+AGG + chr8.1:40082689-40082708 MS.gene009164:intron 25.0%
!!! AATGTCTCCATTTTTTACAA+AGG - chr8.1:40083143-40083162 None:intergenic 25.0%
!!! CAACCATTTTTGAATTTACT+GGG + chr8.1:40080957-40080976 MS.gene009164:intron 25.0%
!!! TAGCATTTATCTAAGGTTTT+AGG + chr8.1:40081544-40081563 MS.gene009164:intron 25.0%
!!! TATTTTCAAGTTTGTTGAAC+AGG + chr8.1:40082942-40082961 MS.gene009164:intron 25.0%
!!! TGTGCCTTAAAATTTTTCAA+CGG + chr8.1:40081438-40081457 MS.gene009164:intron 25.0%
AAAAAAACGCTATAGTTGCA+AGG - chr8.1:40080800-40080819 None:intergenic 30.0%
AACATGGGAAAGTTTGAATT+AGG + chr8.1:40082610-40082629 MS.gene009164:intron 30.0%
AATGTAGAACAATGTATTGC+TGG + chr8.1:40082276-40082295 MS.gene009164:intron 30.0%
AATGTATCAAAGTCTAAACG+AGG - chr8.1:40082104-40082123 None:intergenic 30.0%
ACAAACCACTAAAATCATCA+AGG - chr8.1:40082004-40082023 None:intergenic 30.0%
ACTTACTACACTTCTAATGA+CGG + chr8.1:40081730-40081749 MS.gene009164:intron 30.0%
ATAAATACATTGGATCACAG+AGG - chr8.1:40081706-40081725 None:intergenic 30.0%
ATATCAGATCTGTGAAACAA+TGG + chr8.1:40082229-40082248 MS.gene009164:intron 30.0%
ATATCAGTATCGTCAAATAG+CGG - chr8.1:40081396-40081415 None:intergenic 30.0%
ATCTGTGAAACAATGGTATT+AGG + chr8.1:40082236-40082255 MS.gene009164:intron 30.0%
CAAATGCCAATATCATTTAC+TGG + chr8.1:40082331-40082350 MS.gene009164:intron 30.0%
CTAAACAAAAAAACTTAGGG+AGG + chr8.1:40080987-40081006 MS.gene009164:intron 30.0%
CTAGTAGGATTAAATAGTGT+TGG + chr8.1:40081762-40081781 MS.gene009164:intron 30.0%
TAATTCAAATGCATGCTTCA+CGG - chr8.1:40081867-40081886 None:intergenic 30.0%
TCAGAAATACAAAATTCGTC+AGG + chr8.1:40083066-40083085 MS.gene009164:CDS 30.0%
TGAAAGAGAAGAAAGAAAGA+AGG + chr8.1:40083095-40083114 MS.gene009164:CDS 30.0%
! CAAAGCATTTGAAAATGCAT+TGG + chr8.1:40080467-40080486 MS.gene009164:CDS 30.0%
! CATTTTTGAATTTACTGGGA+CGG + chr8.1:40080961-40080980 MS.gene009164:intron 30.0%
! TCACGTGATGTGATTTTATT+GGG + chr8.1:40080908-40080927 MS.gene009164:intron 30.0%
! TGTTTTGCTGGATTTTGTTA+TGG + chr8.1:40082177-40082196 MS.gene009164:intron 30.0%
!! AACTTCCTTGATGATTTTAG+TGG + chr8.1:40081996-40082015 MS.gene009164:intron 30.0%
!! GAATTTTGTATTTCTGAGCA+TGG - chr8.1:40083063-40083082 None:intergenic 30.0%
!! GCAACCATTTTTGAATTTAC+TGG + chr8.1:40080956-40080975 MS.gene009164:intron 30.0%
!! GTTTTGCTGGATTTTGTTAT+GGG + chr8.1:40082178-40082197 MS.gene009164:intron 30.0%
!!! AATCTCTTCTAAAGTTTTCC+CGG - chr8.1:40080547-40080566 None:intergenic 30.0%
!!! ACAGAAGTTTTTTACTAGGT+TGG + chr8.1:40082693-40082712 MS.gene009164:intron 30.0%
AAACAGTCACAGTAGTTAAC+TGG - chr8.1:40081486-40081505 None:intergenic 35.0%
AAAGAATCATAATCTGGCAG+AGG - chr8.1:40080627-40080646 None:intergenic 35.0%
AAAGGTAACATCATGTATGC+TGG - chr8.1:40083125-40083144 None:intergenic 35.0%
AAGCTAACATCAGGAACTAA+AGG - chr8.1:40080882-40080901 None:intergenic 35.0%
AAGTATATCAAGGTACAGTG+TGG + chr8.1:40083009-40083028 MS.gene009164:CDS 35.0%
AATCACAATCCCTTCTAACA+TGG - chr8.1:40081645-40081664 None:intergenic 35.0%
ACTAAGATCCAGCAAAAAGA+TGG - chr8.1:40082576-40082595 None:intergenic 35.0%
AGAACATCTAACATCGTTGT+AGG - chr8.1:40082050-40082069 None:intergenic 35.0%
ATCCTTGCACAAATTGTCTA+TGG - chr8.1:40082380-40082399 None:intergenic 35.0%
ATTGCGAAAAATAGCCATGA+CGG + chr8.1:40081134-40081153 MS.gene009164:intron 35.0%
CAGTACGTAGCATTTATCTA+AGG + chr8.1:40081537-40081556 MS.gene009164:intron 35.0%
CGTCATATCCAATCAGTAAA+GGG + chr8.1:40081183-40081202 MS.gene009164:intron 35.0%
CGTCCCAGTAAATTCAAAAA+TGG - chr8.1:40080963-40080982 None:intergenic 35.0%
CTTAGATAAATGCTACGTAC+TGG - chr8.1:40081539-40081558 None:intergenic 35.0%
GACTATTAGTTACTTGTCAG+AGG - chr8.1:40082778-40082797 None:intergenic 35.0%
GATATCAACCACATTGAATC+TGG + chr8.1:40080594-40080613 MS.gene009164:CDS 35.0%
GTGAAGCATGCATTTGAATT+AGG + chr8.1:40081866-40081885 MS.gene009164:intron 35.0%
GTGCTACACTATTAAGTACA+AGG - chr8.1:40081313-40081332 None:intergenic 35.0%
TAAAGGAGAACCAGATACAA+TGG - chr8.1:40081516-40081535 None:intergenic 35.0%
TAGTTACTTGTCAGAGGTAA+TGG - chr8.1:40082772-40082791 None:intergenic 35.0%
TATGGGTTTACTCCAATCTT+TGG + chr8.1:40082195-40082214 MS.gene009164:intron 35.0%
TTCCATCATCCATGTTAGAA+GGG + chr8.1:40081633-40081652 MS.gene009164:intron 35.0%
! AGTTCCTGATGTTAGCTTAT+TGG + chr8.1:40080884-40080903 MS.gene009164:intron 35.0%
! ATTGTAGCCAGTGTTATTGA+TGG - chr8.1:40081267-40081286 None:intergenic 35.0%
! CCTTTACTGATTGGATATGA+CGG - chr8.1:40081185-40081204 None:intergenic 35.0%
! CTTCGAGTTCTTATCAAGAA+CGG + chr8.1:40080706-40080725 MS.gene009164:CDS 35.0%
! GGATTGTGGTAACAGATTTT+TGG + chr8.1:40081155-40081174 MS.gene009164:intron 35.0%
! GTCACGTGATGTGATTTTAT+TGG + chr8.1:40080907-40080926 MS.gene009164:intron 35.0%
! GTTCCTGATGTTAGCTTATT+GGG + chr8.1:40080885-40080904 MS.gene009164:intron 35.0%
! TAAATGCTACGTACTGGTAA+AGG - chr8.1:40081533-40081552 None:intergenic 35.0%
! TAGTCCCTATCAGATCTTTT+TGG + chr8.1:40082793-40082812 MS.gene009164:intron 35.0%
! TTGTAGCCAGTGTTATTGAT+GGG - chr8.1:40081266-40081285 None:intergenic 35.0%
!! TTGAACAGGCTATTTCTTCA+AGG + chr8.1:40082956-40082975 MS.gene009164:intron 35.0%
!! TTTTTACTAGGTTGGAAGCT+CGG + chr8.1:40082701-40082720 MS.gene009164:intron 35.0%
!!! AAGGGCATCATAGTGTTTTA+TGG + chr8.1:40081201-40081220 MS.gene009164:intron 35.0%
!!! ATCTCTTCTAAAGTTTTCCC+GGG - chr8.1:40080546-40080565 None:intergenic 35.0%
AAATCCTAGTGGTCCTTGAT+TGG + chr8.1:40081803-40081822 MS.gene009164:intron 40.0%
AAGAGTTCAACAAAGCGTAC+TGG + chr8.1:40080651-40080670 MS.gene009164:CDS 40.0%
AATATCATTTACTGGCGTGG+CGG + chr8.1:40082339-40082358 MS.gene009164:intron 40.0%
AATGTTGCAGTGAGTTACAC+TGG + chr8.1:40082152-40082171 MS.gene009164:intron 40.0%
AGAGATTAAGCGTCACTATG+TGG + chr8.1:40080560-40080579 MS.gene009164:CDS 40.0%
AGTGTAACTCACTGCAACAT+TGG - chr8.1:40082153-40082172 None:intergenic 40.0%
ATCCCTTCTAACATGGATGA+TGG - chr8.1:40081638-40081657 None:intergenic 40.0%
CACCATAGACAATTTGTGCA+AGG + chr8.1:40082375-40082394 MS.gene009164:intron 40.0%
CCGTCATATCCAATCAGTAA+AGG + chr8.1:40081182-40081201 MS.gene009164:intron 40.0%
CTATGATGCCCTTTACTGAT+TGG - chr8.1:40081194-40081213 None:intergenic 40.0%
CTTGCACAAATTGTCTATGG+TGG - chr8.1:40082377-40082396 None:intergenic 40.0%
GCACAAAACCAGATTCAATG+TGG - chr8.1:40080605-40080624 None:intergenic 40.0%
GTTCCATCATCCATGTTAGA+AGG + chr8.1:40081632-40081651 MS.gene009164:intron 40.0%
TCCAAATGACCTACCAATCA+AGG - chr8.1:40081819-40081838 None:intergenic 40.0%
TCCTTGATTGGTAGGTCATT+TGG + chr8.1:40081815-40081834 MS.gene009164:intron 40.0%
TCTTATCAAGAACGGCGAAA+GGG + chr8.1:40080714-40080733 MS.gene009164:CDS 40.0%
TGACCCAATAAGCTAACATC+AGG - chr8.1:40080891-40080910 None:intergenic 40.0%
TTCTTATCAAGAACGGCGAA+AGG + chr8.1:40080713-40080732 MS.gene009164:CDS 40.0%
TTGATTGGTAGGTCATTTGG+AGG + chr8.1:40081818-40081837 MS.gene009164:intron 40.0%
! ATAGTGTTGGGTAAAGCGTT+TGG + chr8.1:40081775-40081794 MS.gene009164:intron 40.0%
! GGCATCATAGTGTTTTATGG+TGG + chr8.1:40081204-40081223 MS.gene009164:intron 40.0%
! TAGTGTTGGGTAAAGCGTTT+GGG + chr8.1:40081776-40081795 MS.gene009164:intron 40.0%
! TGTAGCCAGTGTTATTGATG+GGG - chr8.1:40081265-40081284 None:intergenic 40.0%
!! AAAATAGCCATGACGGATTG+TGG + chr8.1:40081141-40081160 MS.gene009164:intron 40.0%
!! ATGTGTCGGTGTTACAATTG+CGG + chr8.1:40081111-40081130 MS.gene009164:intron 40.0%
!! GTTACACTGGATTGTTTTGC+TGG + chr8.1:40082165-40082184 MS.gene009164:intron 40.0%
!!! GGCTGCAATGCTGTTTTTTA+CGG + chr8.1:40082421-40082440 MS.gene009164:intron 40.0%
!!! TGCAATGCTGTTTTTTACGG+CGG + chr8.1:40082424-40082443 MS.gene009164:intron 40.0%
AGCAGAATTGCTTGCTTGAC+CGG - chr8.1:40083188-40083207 None:intergenic 45.0%
AGGCACAGCTAACATAGCTT+AGG - chr8.1:40081425-40081444 None:intergenic 45.0%
CTATGTTCATCTTCCGTCCA+AGG - chr8.1:40080744-40080763 None:intergenic 45.0%
CTTGGACGGAAGATGAACAT+AGG + chr8.1:40080742-40080761 MS.gene009164:CDS 45.0%
CTTTCCCCCATCAATAACAC+TGG + chr8.1:40081257-40081276 MS.gene009164:intron 45.0%
GCCAATATCATTTACTGGCG+TGG + chr8.1:40082336-40082355 MS.gene009164:intron 45.0%
GCCACGCCAGTAAATGATAT+TGG - chr8.1:40082340-40082359 None:intergenic 45.0%
GTAACTCACTGCAACATTGG+AGG - chr8.1:40082150-40082169 None:intergenic 45.0%
GTGACTGGCGAAGTATATCA+AGG + chr8.1:40082999-40083018 MS.gene009164:CDS 45.0%
TCTGTTACCACAATCCGTCA+TGG - chr8.1:40081151-40081170 None:intergenic 45.0%
TGAAGGAGGAGCTGTGAAAA+GGG + chr8.1:40080674-40080693 MS.gene009164:CDS 45.0%
TTGCTTGCTTGACCGGTAAT+TGG - chr8.1:40083181-40083200 None:intergenic 45.0%
! ACGAGTCTCCATCTTTTTGC+TGG + chr8.1:40082565-40082584 MS.gene009164:intron 45.0%
! AGTGTTGGGTAAAGCGTTTG+GGG + chr8.1:40081777-40081796 MS.gene009164:intron 45.0%
! GTAGCCAGTGTTATTGATGG+GGG - chr8.1:40081264-40081283 None:intergenic 45.0%
! GTTTGGGGTTCAAATCCTAG+TGG + chr8.1:40081792-40081811 MS.gene009164:intron 45.0%
! TCAACAAAGCGTACTGGTGA+AGG + chr8.1:40080657-40080676 MS.gene009164:CDS 45.0%
! TGACGGTTGACTCAACTAGT+AGG + chr8.1:40081747-40081766 MS.gene009164:intron 45.0%
! TTGTGCAAGGATGCTTGCTA+TGG + chr8.1:40082388-40082407 MS.gene009164:intron 45.0%
!! TGTGCAAGGATGCTTGCTAT+GGG + chr8.1:40082389-40082408 MS.gene009164:intron 45.0%
AAAATCGCGGCTGATGTACC+CGG + chr8.1:40080525-40080544 MS.gene009164:CDS 50.0%
AAATGGGTAGCAGCTGTGAG+TGG + chr8.1:40080430-40080449 MS.gene009164:CDS 50.0%
AGCTGTGAAAAGGGGAGCTA+AGG + chr8.1:40080683-40080702 MS.gene009164:CDS 50.0%
CAGTTTCGTCGACGTCAGAA+TGG - chr8.1:40082456-40082475 None:intergenic 50.0%
CCTACCAATCAAGGACCACT+AGG - chr8.1:40081810-40081829 None:intergenic 50.0%
CCTAGTGGTCCTTGATTGGT+AGG + chr8.1:40081807-40081826 MS.gene009164:intron 50.0%
GAAGGAGGAGCTGTGAAAAG+GGG + chr8.1:40080675-40080694 MS.gene009164:CDS 50.0%
GCACCTCAAGGACCAATTAC+CGG + chr8.1:40083166-40083185 MS.gene009164:CDS 50.0%
GGAGACATTTCAGCACCTCA+AGG + chr8.1:40083154-40083173 MS.gene009164:CDS 50.0%
GGATCGATGGGAGAAAATCG+CGG + chr8.1:40080512-40080531 MS.gene009164:CDS 50.0%
GTGAAGGAGGAGCTGTGAAA+AGG + chr8.1:40080673-40080692 MS.gene009164:CDS 50.0%
TCGTCAAATAGCGGCTGTAG+TGG - chr8.1:40081387-40081406 None:intergenic 50.0%
TGACCGGTAATTGGTCCTTG+AGG - chr8.1:40083172-40083191 None:intergenic 50.0%
TGACGTCGACGAAACTGATC+AGG + chr8.1:40082459-40082478 MS.gene009164:intron 50.0%
! ACAAAGCGTACTGGTGAAGG+AGG + chr8.1:40080660-40080679 MS.gene009164:CDS 50.0%
! TGCATTGGCGAATTATCCCG+AGG + chr8.1:40080482-40080501 MS.gene009164:CDS 50.0%
!! CAGGCTATTTCTTCAAGGCC+TGG + chr8.1:40082961-40082980 MS.gene009164:intron 50.0%
!! GCATGGCTTGCTACTTGTGT+AGG - chr8.1:40083046-40083065 None:intergenic 50.0%
!! GTGCAAGGATGCTTGCTATG+GGG + chr8.1:40082390-40082409 MS.gene009164:intron 50.0%
!! TGCAAGGATGCTTGCTATGG+GGG + chr8.1:40082391-40082410 MS.gene009164:intron 50.0%
AAATCGCGGCTGATGTACCC+GGG + chr8.1:40080526-40080545 MS.gene009164:CDS 55.0%
AAGGCCTGGAGAACCATGGA+TGG + chr8.1:40082975-40082994 MS.gene009164:CDS 55.0%
AGAACCATGGATGGGGTGAC+TGG + chr8.1:40082984-40083003 MS.gene009164:CDS 55.0%
AGGCCTGGAGAACCATGGAT+GGG + chr8.1:40082976-40082995 MS.gene009164:CDS 55.0%
CTTCAAGGCCTGGAGAACCA+TGG + chr8.1:40082971-40082990 MS.gene009164:CDS 55.0%
GAATTATCCCGAGGACGCTG+TGG + chr8.1:40080491-40080510 MS.gene009164:CDS 55.0%
!! AACGGCGAAAGGGTGTTCCT+TGG + chr8.1:40080724-40080743 MS.gene009164:CDS 55.0%
!! GCGAAAGGGTGTTCCTTGGA+CGG + chr8.1:40080728-40080747 MS.gene009164:CDS 55.0%
!! GCTTGCTATGGGGGTGCTAT+CGG + chr8.1:40082400-40082419 MS.gene009164:intron 55.0%
CACCCCATCCATGGTTCTCC+AGG - chr8.1:40082982-40083001 None:intergenic 60.0%
CATCGATCCACAGCGTCCTC+GGG - chr8.1:40080501-40080520 None:intergenic 60.0%
CCATCGATCCACAGCGTCCT+CGG - chr8.1:40080502-40080521 None:intergenic 60.0%
CGAGGACGCTGTGGATCGAT+GGG + chr8.1:40080500-40080519 MS.gene009164:CDS 60.0%
GGCCTGGAGAACCATGGATG+GGG + chr8.1:40082977-40082996 MS.gene009164:CDS 60.0%
TTCGCCAGTCACCCCATCCA+TGG - chr8.1:40082991-40083010 None:intergenic 60.0%
CCGAGGACGCTGTGGATCGA+TGG + chr8.1:40080499-40080518 MS.gene009164:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 40080423 40083211 40080423 ID=MS.gene009164
chr8.1 mRNA 40080423 40083211 40080423 ID=MS.gene009164.t1;Parent=MS.gene009164
chr8.1 exon 40080423 40080763 40080423 ID=MS.gene009164.t1.exon1;Parent=MS.gene009164.t1
chr8.1 CDS 40080423 40080763 40080423 ID=cds.MS.gene009164.t1;Parent=MS.gene009164.t1
chr8.1 exon 40082964 40083211 40082964 ID=MS.gene009164.t1.exon2;Parent=MS.gene009164.t1
chr8.1 CDS 40082964 40083211 40082964 ID=cds.MS.gene009164.t1;Parent=MS.gene009164.t1
Gene Sequence

>MS.gene009164

ATGGATGAAATGGGTAGCAGCTGTGAGTGGAGCAGAGATCAAGACAAAGCATTTGAAAATGCATTGGCGAATTATCCCGAGGACGCTGTGGATCGATGGGAGAAAATCGCGGCTGATGTACCCGGGAAAACTTTAGAAGAGATTAAGCGTCACTATGTGGTTTTGTTTGACGATATCAACCACATTGAATCTGGTTTTGTGCCTCTGCCAGATTATGATTCTTTTTCAAAGAGTTCAACAAAGCGTACTGGTGAAGGAGGAGCTGTGAAAAGGGGAGCTAAGGCTTCGAGTTCTTATCAAGAACGGCGAAAGGGTGTTCCTTGGACGGAAGATGAACATAGGTTAGTTTATCCGTATTTAAATATGATTTTAGTCCTTGCAACTATAGCGTTTTTTTTGTTTTAATCTTGTAAATTTTTTTTATTGGATTAAATCTCTGCAAATTCAAAAGTATTGCCTTTAGTTCCTGATGTTAGCTTATTGGGTCACGTGATGTGATTTTATTGGGTCATGTATAACGTTAGAGACTAAAAGCAACCATTTTTGAATTTACTGGGACGGAATCTAAACAAAAAAACTTAGGGAGGCTAAAACCAAAAAACACTATAATTATTAATTGCAGGGACTAAAATCATATTAAACCTTTATTTTATTTAAATATATACTCTTGAGGTTTTTTTAAGCTTATATGTGTCGGTGTTACAATTGCGGATTGCGAAAAATAGCCATGACGGATTGTGGTAACAGATTTTTGGACAACCGTCATATCCAATCAGTAAAGGGCATCATAGTGTTTTATGGTGGATATGAATGATTAAAATGATGGATTTTTTGCTTTCCCCCATCAATAACACTGGCTACAATATTATAGTCGCTATTTGACAACACCTTGTACTTAATAGTGTAGCACAAAATCATAGCAATTTGTTCAAATTCTGCTATGCTATATAGTGATATAGTGCCACTACAGCCGCTATTTGACGATACTGATATATACATCCTAAGCTATGTTAGCTGTGCCTTAAAATTTTTCAACGGATCTTTGTTAGAGAAGTTTATGCCAGTTAACTACTGTGACTGTTTTACTAAACCATTGTATCTGGTTCTCCTTTACCAGTACGTAGCATTTATCTAAGGTTTTAGGTAAGAATGAAGTAAATAAAACTATGGATTTAATGAGGACTTATATGAATGAATTGAGTTCTGCTAGTTCCATCATCCATGTTAGAAGGGATTGTGATTACTAACTATGTTACTGTAATAAATTCTTCTGATGTGGTCCTCTGTGATCCAATGTATTTATTAGAACTTACTACACTTCTAATGACGGTTGACTCAACTAGTAGGATTAAATAGTGTTGGGTAAAGCGTTTGGGGTTCAAATCCTAGTGGTCCTTGATTGGTAGGTCATTTGGAGGTACTTCTCTAAGTGTTCACTGAACCGTGAAGCATGCATTTGAATTAGGCAATATCCTAGAATTAAAACATCCTAAAATTAAAACATCAATGAAAATGTATGGGGTTCTAATTTTTTTATTCATAAAGAGAAAAGTGATATCAAAATTAAAACATGAACTTCCTTGATGATTTTAGTGGTTTGTTTCTCCTAATACTAACACAATATCCTACAACGATGTTAGATGTTCTACTCATCATGTACACATTAGAATTTAGTGTGCCTCGTTTAGACTTTGATACATTGATATAGGATTTATGATAATTTGCCTCCAATGTTGCAGTGAGTTACACTGGATTGTTTTGCTGGATTTTGTTATGGGTTTACTCCAATCTTTGGAAAAGTTACTAATATCAGATCTGTGAAACAATGGTATTAGGAGATTCTTTGACAACGTAATGTAGAACAATGTATTGCTGGCTTTTAGAAACATTTGATGAGTTTGTTTGTTACAAATGCCAATATCATTTACTGGCGTGGCGGATTTTTTGACAACCACCATAGACAATTTGTGCAAGGATGCTTGCTATGGGGGTGCTATCGGCTGCAATGCTGTTTTTTACGGCGGATTTTGCCATTCTGACGTCGACGAAACTGATCAGGATTAGTTTGTTGACTAAATTTAGAGTTACTGGTTAAGAAAAGCTCTCATTTTAGCATTTGATCATCTTTGAATATGATTATACACGAGTCTCCATCTTTTTGCTGGATCTTAGTATAAAAACTTTTCTAACATGGGAAAGTTTGAATTAGGAAGTTTGGTAAATACTGATAAATAAGGACTAGAATTGGGTAAGTTTAACATATACTAAACACAGAAGTTTTTTACTAGGTTGGAAGCTCGGTTATTGATGTTTTCTTTGTCTGCTCATGATAGTGCTAAAATGATTCCATTACCTCTGACAAGTAACTAATAGTCCCTATCAGATCTTTTTGGTTTTAAGTTTGATGTTCAGCCATTAGATGATTATCAGTAACATTAATTGCAGACATTAGTTATATGGTTGTCAATAGCATATTAATCACAACTATTATTGTTGTTGTTGTTGTTGTTGTTTTTAAGTATTTTCAAGTTTGTTGAACAGGCTATTTCTTCAAGGCCTGGAGAACCATGGATGGGGTGACTGGCGAAGTATATCAAGGTACAGTGTGGTGACAAGAACACCTACACAAGTAGCAAGCCATGCTCAGAAATACAAAATTCGTCAGGATTCAATGAAAGAGAAGAAAGAAAGAAGGCGATCCAGCATACATGATGTTACCTTTGTAAAAAATGGAGACATTTCAGCACCTCAAGGACCAATTACCGGTCAAGCAAGCAATTCTGCTGCAA

Protein sequence

>MS.gene009164.t1

MDEMGSSCEWSRDQDKAFENALANYPEDAVDRWEKIAADVPGKTLEEIKRHYVVLFDDINHIESGFVPLPDYDSFSKSSTKRTGEGGAVKRGAKASSSYQERRKGVPWTEDEHRLFLQGLENHGWGDWRSISRYSVVTRTPTQVASHAQKYKIRQDSMKEKKERRRSSIHDVTFVKNGDISAPQGPITGQASNSAA