Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009270.t1 | XP_003598025.2 | 77.2 | 523 | 116 | 2 | 1 | 522 | 20 | 540 | 4.30E-232 | 813.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009270.t1 | Q8L3W1 | 28.1 | 338 | 154 | 5 | 271 | 522 | 6 | 340 | 1.2e-28 | 129.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009270.t1 | G7IYE4 | 77.2 | 523 | 116 | 2 | 1 | 522 | 20 | 540 | 3.1e-232 | 813.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene009270.t1 | TF | B3 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009270.t1 | MTR_3g005420 | 77.247 | 523 | 116 | 2 | 1 | 522 | 20 | 540 | 0.0 | 821 |
MS.gene009270.t1 | MTR_3g005420 | 71.128 | 523 | 113 | 3 | 1 | 522 | 1 | 486 | 0.0 | 739 |
MS.gene009270.t1 | MTR_3g005440 | 79.458 | 443 | 56 | 3 | 37 | 478 | 34 | 442 | 0.0 | 698 |
MS.gene009270.t1 | MTR_3g005440 | 51.707 | 205 | 70 | 2 | 18 | 200 | 237 | 434 | 3.14e-59 | 202 |
MS.gene009270.t1 | MTR_3g005460 | 63.346 | 532 | 174 | 5 | 1 | 522 | 1 | 521 | 0.0 | 644 |
MS.gene009270.t1 | MTR_3g005495 | 57.796 | 481 | 166 | 8 | 38 | 516 | 28 | 473 | 0.0 | 519 |
MS.gene009270.t1 | MTR_3g005495 | 49.167 | 240 | 110 | 5 | 18 | 248 | 238 | 474 | 2.78e-61 | 209 |
MS.gene009270.t1 | MTR_3g005490 | 66.023 | 259 | 77 | 2 | 266 | 523 | 16 | 264 | 5.57e-119 | 351 |
MS.gene009270.t1 | MTR_3g005490 | 58.167 | 251 | 91 | 3 | 5 | 242 | 4 | 253 | 4.35e-89 | 275 |
MS.gene009270.t1 | MTR_5g070440 | 66.148 | 257 | 87 | 0 | 266 | 522 | 16 | 272 | 2.40e-116 | 345 |
MS.gene009270.t1 | MTR_5g070440 | 56.818 | 264 | 90 | 2 | 1 | 242 | 1 | 262 | 4.97e-93 | 285 |
MS.gene009270.t1 | MTR_3g005480 | 64.479 | 259 | 80 | 2 | 266 | 522 | 16 | 264 | 2.28e-115 | 342 |
MS.gene009270.t1 | MTR_3g005480 | 56.746 | 252 | 94 | 3 | 5 | 242 | 4 | 254 | 1.20e-84 | 263 |
MS.gene009270.t1 | MTR_3g098790 | 29.693 | 293 | 163 | 6 | 270 | 521 | 12 | 302 | 3.16e-29 | 118 |
MS.gene009270.t1 | MTR_3g098790 | 27.046 | 281 | 144 | 7 | 16 | 235 | 6 | 286 | 1.16e-19 | 90.5 |
MS.gene009270.t1 | MTR_8g103940 | 29.630 | 297 | 156 | 9 | 271 | 518 | 39 | 331 | 1.16e-27 | 116 |
MS.gene009270.t1 | MTR_8g103940 | 32.323 | 99 | 67 | 0 | 23 | 121 | 39 | 137 | 7.70e-14 | 74.3 |
MS.gene009270.t1 | MTR_7g050710 | 28.296 | 311 | 174 | 7 | 263 | 524 | 3 | 313 | 1.54e-27 | 113 |
MS.gene009270.t1 | MTR_7g050710 | 24.855 | 346 | 198 | 10 | 22 | 359 | 12 | 303 | 3.11e-18 | 86.3 |
MS.gene009270.t1 | MTR_7g050560 | 29.787 | 282 | 168 | 4 | 270 | 521 | 12 | 293 | 1.63e-27 | 113 |
MS.gene009270.t1 | MTR_7g050560 | 33.981 | 103 | 68 | 0 | 22 | 124 | 12 | 114 | 8.03e-18 | 84.7 |
MS.gene009270.t1 | MTR_1g034240 | 47.475 | 99 | 52 | 0 | 271 | 369 | 7 | 105 | 2.21e-27 | 114 |
MS.gene009270.t1 | MTR_1g034240 | 40.404 | 99 | 59 | 0 | 23 | 121 | 7 | 105 | 4.69e-21 | 96.3 |
MS.gene009270.t1 | MTR_5g044670 | 26.974 | 304 | 180 | 8 | 263 | 525 | 8 | 310 | 4.13e-27 | 112 |
MS.gene009270.t1 | MTR_5g044670 | 34.211 | 114 | 74 | 1 | 9 | 121 | 1 | 114 | 1.92e-16 | 80.9 |
MS.gene009270.t1 | MTR_3g061340 | 30.147 | 272 | 156 | 7 | 271 | 517 | 12 | 274 | 5.32e-27 | 110 |
MS.gene009270.t1 | MTR_3g061340 | 25.651 | 269 | 138 | 9 | 23 | 241 | 12 | 268 | 3.53e-13 | 70.5 |
MS.gene009270.t1 | MTR_3g061310 | 29.225 | 284 | 156 | 7 | 270 | 517 | 11 | 285 | 7.07e-27 | 110 |
MS.gene009270.t1 | MTR_3g061310 | 27.206 | 272 | 143 | 7 | 22 | 241 | 11 | 279 | 8.69e-20 | 90.1 |
MS.gene009270.t1 | MTR_3g061320 | 30.108 | 279 | 154 | 8 | 270 | 517 | 11 | 279 | 1.71e-26 | 109 |
MS.gene009270.t1 | MTR_3g061320 | 27.881 | 269 | 139 | 8 | 22 | 241 | 11 | 273 | 3.28e-20 | 91.3 |
MS.gene009270.t1 | MTR_1g015350 | 39.779 | 181 | 37 | 4 | 314 | 494 | 58 | 166 | 2.74e-26 | 105 |
MS.gene009270.t1 | MTR_1g015350 | 37.126 | 167 | 53 | 4 | 66 | 231 | 58 | 173 | 2.64e-20 | 88.6 |
MS.gene009270.t1 | MTR_7g050580 | 28.283 | 297 | 164 | 8 | 264 | 521 | 7 | 293 | 3.14e-26 | 109 |
MS.gene009270.t1 | MTR_7g050580 | 24.549 | 277 | 155 | 7 | 12 | 235 | 2 | 277 | 4.19e-19 | 88.6 |
MS.gene009270.t1 | MTR_3g061350 | 26.950 | 282 | 162 | 6 | 271 | 517 | 12 | 284 | 9.27e-25 | 104 |
MS.gene009270.t1 | MTR_3g061350 | 26.296 | 270 | 145 | 8 | 23 | 241 | 12 | 278 | 2.05e-17 | 83.2 |
MS.gene009270.t1 | MTR_1g108780 | 28.620 | 297 | 147 | 11 | 286 | 527 | 12 | 298 | 5.98e-24 | 105 |
MS.gene009270.t1 | MTR_1g108780 | 33.333 | 84 | 56 | 0 | 38 | 121 | 12 | 95 | 6.17e-12 | 68.2 |
MS.gene009270.t1 | MTR_1g108780 | 26.592 | 267 | 170 | 10 | 271 | 519 | 201 | 459 | 5.95e-11 | 65.1 |
MS.gene009270.t1 | MTR_3g061370 | 29.391 | 279 | 165 | 7 | 268 | 517 | 6 | 281 | 1.01e-23 | 101 |
MS.gene009270.t1 | MTR_3g061370 | 25.532 | 282 | 140 | 6 | 19 | 241 | 5 | 275 | 5.01e-20 | 90.9 |
MS.gene009270.t1 | MTR_4g068320 | 43.137 | 102 | 58 | 0 | 268 | 369 | 3 | 104 | 3.44e-23 | 102 |
MS.gene009270.t1 | MTR_4g068320 | 34.513 | 113 | 65 | 1 | 9 | 121 | 1 | 104 | 5.28e-16 | 80.9 |
MS.gene009270.t1 | MTR_1g034210 | 41.748 | 103 | 60 | 0 | 271 | 373 | 7 | 109 | 3.41e-22 | 97.8 |
MS.gene009270.t1 | MTR_1g034210 | 33.613 | 119 | 68 | 1 | 23 | 141 | 7 | 114 | 1.13e-15 | 78.6 |
MS.gene009270.t1 | MTR_1g034210 | 41.748 | 103 | 60 | 0 | 271 | 373 | 7 | 109 | 6.73e-22 | 97.8 |
MS.gene009270.t1 | MTR_1g034210 | 33.613 | 119 | 68 | 1 | 23 | 141 | 7 | 114 | 1.58e-15 | 78.6 |
MS.gene009270.t1 | MTR_1g035460 | 28.571 | 294 | 140 | 8 | 287 | 518 | 2 | 287 | 5.24e-21 | 95.5 |
MS.gene009270.t1 | MTR_1g035460 | 37.647 | 85 | 53 | 0 | 39 | 123 | 2 | 86 | 9.07e-14 | 73.6 |
MS.gene009270.t1 | MTR_7g050590 | 27.931 | 290 | 146 | 10 | 287 | 521 | 2 | 283 | 8.26e-21 | 93.2 |
MS.gene009270.t1 | MTR_7g050590 | 31.250 | 112 | 72 | 1 | 39 | 145 | 2 | 113 | 1.80e-15 | 77.4 |
MS.gene009270.t1 | MTR_1g021360 | 27.338 | 278 | 153 | 8 | 282 | 514 | 193 | 466 | 4.89e-20 | 93.6 |
MS.gene009270.t1 | MTR_4g119990 | 28.669 | 293 | 156 | 8 | 270 | 511 | 14 | 304 | 6.51e-20 | 92.0 |
MS.gene009270.t1 | MTR_3g061290 | 32.075 | 212 | 119 | 8 | 270 | 475 | 11 | 203 | 9.40e-20 | 88.2 |
MS.gene009270.t1 | MTR_3g061290 | 37.000 | 100 | 61 | 1 | 22 | 121 | 11 | 108 | 7.60e-15 | 73.9 |
MS.gene009270.t1 | MTR_7g050720 | 26.059 | 307 | 169 | 6 | 270 | 518 | 9 | 315 | 1.00e-19 | 90.5 |
MS.gene009270.t1 | MTR_7g050720 | 34.653 | 101 | 66 | 0 | 22 | 122 | 9 | 109 | 5.21e-16 | 79.7 |
MS.gene009270.t1 | MTR_6g043890 | 28.421 | 285 | 155 | 8 | 270 | 508 | 14 | 295 | 3.90e-19 | 89.4 |
MS.gene009270.t1 | MTR_0152s0100 | 39.640 | 111 | 66 | 1 | 412 | 522 | 3 | 112 | 5.38e-19 | 83.2 |
MS.gene009270.t1 | MTR_0152s0100 | 39.640 | 111 | 66 | 1 | 412 | 522 | 3 | 112 | 5.38e-19 | 83.2 |
MS.gene009270.t1 | MTR_3g061330 | 41.414 | 99 | 56 | 1 | 271 | 369 | 12 | 108 | 7.20e-16 | 77.8 |
MS.gene009270.t1 | MTR_3g061330 | 38.384 | 99 | 59 | 1 | 23 | 121 | 12 | 108 | 1.26e-14 | 74.3 |
MS.gene009270.t1 | MTR_3g061220 | 40.404 | 99 | 44 | 2 | 23 | 121 | 12 | 95 | 7.81e-16 | 74.3 |
MS.gene009270.t1 | MTR_3g061220 | 40.404 | 99 | 44 | 2 | 271 | 369 | 12 | 95 | 2.30e-15 | 72.8 |
MS.gene009270.t1 | MTR_1g035640 | 26.471 | 272 | 166 | 9 | 280 | 520 | 14 | 282 | 8.32e-16 | 80.5 |
MS.gene009270.t1 | MTR_7g050640 | 36.842 | 95 | 60 | 0 | 270 | 364 | 12 | 106 | 5.69e-14 | 68.9 |
MS.gene009270.t1 | MTR_7g050640 | 29.630 | 108 | 76 | 0 | 16 | 123 | 6 | 113 | 2.69e-12 | 63.9 |
MS.gene009270.t1 | MTR_1g035440 | 36.538 | 104 | 65 | 1 | 270 | 372 | 14 | 117 | 1.27e-13 | 71.2 |
MS.gene009270.t1 | MTR_6g061070 | 24.038 | 312 | 170 | 8 | 270 | 519 | 17 | 323 | 2.19e-13 | 72.8 |
MS.gene009270.t1 | MTR_1g035480 | 29.921 | 127 | 86 | 2 | 265 | 391 | 11 | 134 | 4.91e-13 | 68.2 |
MS.gene009270.t1 | MTR_1g033740 | 33.628 | 113 | 70 | 3 | 270 | 382 | 21 | 128 | 1.23e-12 | 67.4 |
MS.gene009270.t1 | MTR_1g033740 | 26.786 | 168 | 98 | 5 | 22 | 170 | 21 | 182 | 4.98e-11 | 62.4 |
MS.gene009270.t1 | MTR_1g021270 | 31.959 | 97 | 65 | 1 | 270 | 366 | 15 | 110 | 4.95e-12 | 68.9 |
MS.gene009270.t1 | MTR_1g035500 | 30.328 | 122 | 82 | 2 | 270 | 391 | 24 | 142 | 9.31e-12 | 64.3 |
MS.gene009270.t1 | MTR_1g021320 | 24.645 | 211 | 115 | 6 | 197 | 364 | 66 | 275 | 3.22e-11 | 66.6 |
MS.gene009270.t1 | MTR_1g050845 | 23.048 | 269 | 188 | 7 | 269 | 522 | 7 | 271 | 3.97e-11 | 66.2 |
MS.gene009270.t1 | MTR_1g021440 | 33.696 | 92 | 60 | 1 | 270 | 361 | 22 | 112 | 6.12e-11 | 63.9 |
MS.gene009270.t1 | MTR_1g021440 | 33.696 | 92 | 60 | 1 | 270 | 361 | 22 | 112 | 7.02e-11 | 63.9 |
MS.gene009270.t1 | MTR_1g021290 | 26.087 | 184 | 117 | 4 | 197 | 364 | 68 | 248 | 8.16e-11 | 63.9 |
MS.gene009270.t1 | MTR_1g021380 | 34.066 | 91 | 59 | 1 | 270 | 360 | 21 | 110 | 9.85e-11 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009270.t1 | AT3G18990 | 28.060 | 335 | 158 | 7 | 271 | 522 | 6 | 340 | 6.48e-31 | 123 |
MS.gene009270.t1 | AT3G18990 | 38.384 | 99 | 61 | 0 | 23 | 121 | 6 | 104 | 1.09e-18 | 87.8 |
MS.gene009270.t1 | AT3G18990 | 28.144 | 334 | 157 | 7 | 271 | 521 | 6 | 339 | 2.13e-30 | 122 |
MS.gene009270.t1 | AT3G18990 | 38.384 | 99 | 61 | 0 | 23 | 121 | 6 | 104 | 1.73e-18 | 87.8 |
MS.gene009270.t1 | AT3G18960 | 37.879 | 132 | 79 | 1 | 240 | 371 | 2 | 130 | 2.54e-20 | 89.4 |
MS.gene009270.t1 | AT3G18960 | 35.185 | 108 | 70 | 0 | 16 | 123 | 23 | 130 | 1.85e-16 | 78.2 |
MS.gene009270.t1 | AT3G18960 | 37.037 | 135 | 82 | 1 | 240 | 374 | 2 | 133 | 3.82e-20 | 89.4 |
MS.gene009270.t1 | AT3G18960 | 35.185 | 108 | 70 | 0 | 16 | 123 | 23 | 130 | 4.74e-16 | 77.4 |
MS.gene009270.t1 | AT4G01580 | 35.556 | 135 | 84 | 1 | 240 | 374 | 2 | 133 | 4.18e-20 | 88.6 |
MS.gene009270.t1 | AT4G01580 | 29.412 | 153 | 95 | 2 | 3 | 155 | 15 | 154 | 1.08e-17 | 81.6 |
MS.gene009270.t1 | AT1G49475 | 42.342 | 111 | 63 | 1 | 269 | 379 | 32 | 141 | 1.20e-19 | 87.4 |
MS.gene009270.t1 | AT1G49475 | 33.813 | 139 | 81 | 2 | 4 | 132 | 5 | 142 | 1.35e-16 | 78.6 |
MS.gene009270.t1 | AT1G26680 | 21.858 | 549 | 345 | 20 | 22 | 516 | 14 | 532 | 6.79e-18 | 87.8 |
MS.gene009270.t1 | AT1G26680 | 21.858 | 549 | 345 | 20 | 22 | 516 | 14 | 532 | 6.99e-18 | 87.8 |
MS.gene009270.t1 | AT2G24645 | 22.309 | 511 | 347 | 19 | 20 | 513 | 3 | 480 | 1.03e-15 | 80.1 |
MS.gene009270.t1 | AT2G24645 | 21.556 | 450 | 312 | 13 | 78 | 513 | 66 | 488 | 2.56e-15 | 79.0 |
MS.gene009270.t1 | AT2G24645 | 21.930 | 456 | 303 | 15 | 78 | 513 | 44 | 466 | 3.95e-15 | 78.2 |
MS.gene009270.t1 | AT3G18960 | 39.560 | 91 | 55 | 0 | 284 | 374 | 6 | 96 | 4.95e-15 | 73.6 |
MS.gene009270.t1 | AT3G18960 | 35.227 | 88 | 57 | 0 | 36 | 123 | 6 | 93 | 2.33e-12 | 65.9 |
MS.gene009270.t1 | AT1G26680 | 21.072 | 541 | 348 | 19 | 22 | 511 | 14 | 526 | 5.37e-15 | 79.0 |
MS.gene009270.t1 | AT1G26680 | 21.072 | 541 | 348 | 19 | 22 | 511 | 14 | 526 | 6.80e-15 | 78.6 |
MS.gene009270.t1 | AT1G26680 | 20.833 | 552 | 358 | 22 | 22 | 516 | 14 | 543 | 9.73e-14 | 74.7 |
MS.gene009270.t1 | AT1G26680 | 21.138 | 492 | 319 | 19 | 78 | 516 | 55 | 530 | 1.48e-12 | 70.9 |
MS.gene009270.t1 | AT1G49480 | 36.607 | 112 | 62 | 3 | 142 | 248 | 113 | 220 | 3.41e-11 | 63.5 |
MS.gene009270.t1 | AT1G49480 | 35.714 | 112 | 62 | 4 | 417 | 522 | 118 | 225 | 4.43e-11 | 63.5 |
MS.gene009270.t1 | AT1G49480 | 36.607 | 112 | 62 | 3 | 142 | 248 | 113 | 220 | 3.41e-11 | 63.5 |
MS.gene009270.t1 | AT1G49480 | 35.714 | 112 | 62 | 4 | 417 | 522 | 118 | 225 | 4.43e-11 | 63.5 |
MS.gene009270.t1 | AT1G49480 | 36.607 | 112 | 62 | 3 | 142 | 248 | 113 | 220 | 3.41e-11 | 63.5 |
MS.gene009270.t1 | AT1G49480 | 35.714 | 112 | 62 | 4 | 417 | 522 | 118 | 225 | 4.43e-11 | 63.5 |
MS.gene009270.t1 | AT4G31640 | 23.904 | 251 | 154 | 9 | 267 | 506 | 10 | 234 | 5.22e-11 | 64.7 |
Find 85 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATGCTTTCCTTGAGAATTT+TGG | 0.134641 | 3.2:-24385 | None:intergenic |
GGCAGCACAATTCACTCTTT+TGG | 0.221967 | 3.2:-22858 | None:intergenic |
ACTGCTTTCCTTGAGAGTTT+TGG | 0.223060 | 3.2:-23094 | None:intergenic |
GATGAGTTTATAACAAGATT+TGG | 0.242784 | 3.2:+23790 | MS.gene009270:CDS |
TTGTTGTCCTTTACAAATTT+CGG | 0.251174 | 3.2:-24470 | None:intergenic |
GATGAGTTTATAAATAGATT+TGG | 0.270080 | 3.2:+22557 | MS.gene009270:CDS |
AAATACTATTCGTTAGGATA+TGG | 0.294914 | 3.2:+23928 | MS.gene009270:CDS |
TACTATCTCTTTGTCTTGAA+TGG | 0.298245 | 3.2:-23497 | None:intergenic |
TATGGCTTTCATAAAATGTT+TGG | 0.299040 | 3.2:-21737 | None:intergenic |
TTCAAAACTCCAAGTACTAA+TGG | 0.347246 | 3.2:+22803 | MS.gene009270:CDS |
CTTTGATCTCCATTAGTACT+TGG | 0.349576 | 3.2:-22812 | None:intergenic |
ATTTGCATTGAGAATGATTT+GGG | 0.350230 | 3.2:-24434 | None:intergenic |
ATGAGTTTATAAATAGATTT+GGG | 0.360502 | 3.2:+22558 | MS.gene009270:CDS |
ATGAGTTTATAACAAGATTT+GGG | 0.367534 | 3.2:+23791 | MS.gene009270:CDS |
TGGAGTGCGATTGGAACATT+TGG | 0.367737 | 3.2:-24365 | None:intergenic |
TTGAATGGGCGAGGGAAGTA+TGG | 0.375377 | 3.2:-23482 | None:intergenic |
CTACTCCTATGAAAAGTTCC+AGG | 0.375640 | 3.2:+24079 | MS.gene009270:CDS |
TATTTGCATTGAGAATGATT+TGG | 0.397480 | 3.2:-24435 | None:intergenic |
AATCTATTTATAAACTCATC+TGG | 0.412994 | 3.2:-22554 | None:intergenic |
AATCTTGTTATAAACTCATC+TGG | 0.413404 | 3.2:-23787 | None:intergenic |
ATGATCTGGAGGAGGAAGTA+TGG | 0.415345 | 3.2:-21755 | None:intergenic |
GCGACGGAACACATCTTTGC+CGG | 0.419956 | 3.2:-21690 | None:intergenic |
ATTCTGTAGTACGTTCCTTC+TGG | 0.420347 | 3.2:+23029 | MS.gene009270:intron |
TTTGCAAAATACTATTCGTT+AGG | 0.426106 | 3.2:+23922 | MS.gene009270:CDS |
ACTATCTCTTTGTCTTGAAT+GGG | 0.432252 | 3.2:-23496 | None:intergenic |
CTCTTTGTCTTGAATGGGCG+AGG | 0.444494 | 3.2:-23491 | None:intergenic |
AAGGGAAAACAATCTATTAG+AGG | 0.448831 | 3.2:+23190 | MS.gene009270:CDS |
TGATGGTCGTGAATGGGAAA+TGG | 0.450553 | 3.2:+22616 | MS.gene009270:CDS |
AATGGAGATCAAAGCATAAA+GGG | 0.451246 | 3.2:+22821 | MS.gene009270:CDS |
TTCTCAATGCAAATAACAAT+GGG | 0.452154 | 3.2:+24443 | MS.gene009270:CDS |
TAATGGAGATCAAAGCATAA+AGG | 0.452714 | 3.2:+22820 | MS.gene009270:CDS |
TTGGAATCTTTCTCCGGTGC+CGG | 0.453652 | 3.2:-21718 | None:intergenic |
CTGTTCCTGATGGTCGTGAT+TGG | 0.457555 | 3.2:+23842 | MS.gene009270:CDS |
AAATGTTTGGAATCTTTCTC+CGG | 0.458549 | 3.2:-21724 | None:intergenic |
TATTGTATTTCGAATACAAA+AGG | 0.459107 | 3.2:+23125 | MS.gene009270:CDS |
ATGTTTCGTGCGGTTGACTA+CGG | 0.465735 | 3.2:+24560 | MS.gene009270:CDS |
CAATGACAGAAAATGAAGTA+AGG | 0.469914 | 3.2:+23437 | MS.gene009270:CDS |
TCTTTCTCCGGTGCCGGTGA+CGG | 0.473264 | 3.2:-21712 | None:intergenic |
GGGATTTCCGAAATTTGTAA+AGG | 0.476832 | 3.2:+24463 | MS.gene009270:CDS |
ATTTCCCATTCACGACCATC+AGG | 0.482051 | 3.2:-22614 | None:intergenic |
CTGTGTGTTTGTTTCTCCAT+TGG | 0.483276 | 3.2:-24052 | None:intergenic |
AAAATTCTCAAGGAAAGCAT+TGG | 0.485732 | 3.2:+24387 | MS.gene009270:CDS |
TCCGTCGCCGTCACCGGCAC+CGG | 0.490647 | 3.2:+21705 | MS.gene009270:CDS |
GCAACTTGTAGCACAACAAC+AGG | 0.493988 | 3.2:-23248 | None:intergenic |
ACTGTTGCCAATTGTTGCTA+AGG | 0.496870 | 3.2:-22667 | None:intergenic |
GAATACTATTCCATCAGTTA+CGG | 0.500398 | 3.2:+22695 | MS.gene009270:CDS |
TTGTTCCTGATGGTCGTGAA+TGG | 0.506528 | 3.2:+22609 | MS.gene009270:CDS |
ATGTGTTCCGTCGCCGTCAC+CGG | 0.509296 | 3.2:+21699 | MS.gene009270:CDS |
GCTATCATTATTGTTCCTGA+TGG | 0.512138 | 3.2:+22599 | MS.gene009270:CDS |
ATTCTCAATGCAAATAACAA+TGG | 0.514820 | 3.2:+24442 | MS.gene009270:CDS |
CTCAAAACTCTAAGTACCAA+TGG | 0.522769 | 3.2:+24036 | MS.gene009270:CDS |
ACTGCCACTTGTTTCAACCC+TGG | 0.525622 | 3.2:-24097 | None:intergenic |
TCCGGTGCCGGTGACGGCGA+CGG | 0.526161 | 3.2:-21706 | None:intergenic |
TGAGTTGATCAAGGAGAAGC+CGG | 0.526203 | 3.2:+24520 | MS.gene009270:CDS |
TTGTGTGTTTGAGTTGATCA+AGG | 0.529271 | 3.2:+24511 | MS.gene009270:CDS |
GATGGTCGTGAATGGGAAAT+GGG | 0.538439 | 3.2:+22617 | MS.gene009270:CDS |
GTGGATTCAGTAAATTTGCA+AGG | 0.539955 | 3.2:+23171 | MS.gene009270:CDS |
TATTATATTTGATGTAACTT+CGG | 0.545296 | 3.2:+23996 | MS.gene009270:CDS |
TGTTCCTGATGGTCGTGAAT+GGG | 0.546552 | 3.2:+22610 | MS.gene009270:CDS |
TTTCATTCAAAATCCGTCAA+GGG | 0.556507 | 3.2:+22908 | MS.gene009270:CDS |
AATGACAGAAAATGAAGTAA+GGG | 0.563753 | 3.2:+23438 | MS.gene009270:CDS |
TACATATCTTTCAAATACGA+AGG | 0.575333 | 3.2:+23955 | MS.gene009270:CDS |
TTCATGCTCCAAAACTCTCA+AGG | 0.581396 | 3.2:+23086 | MS.gene009270:CDS |
AGGGAAAACAATCTATTAGA+GGG | 0.584707 | 3.2:+23191 | MS.gene009270:CDS |
TGGATTCAGTAAATTTGCAA+GGG | 0.590777 | 3.2:+23172 | MS.gene009270:CDS |
AAAACTCTCAAGGAAAGCAG+TGG | 0.591204 | 3.2:+23096 | MS.gene009270:CDS |
CAATGCAGCCTCCATGCGGA+AGG | 0.592466 | 3.2:+23404 | MS.gene009270:intron |
AATTGCTAAGCGAAATCTTG+TGG | 0.593067 | 3.2:+24218 | MS.gene009270:CDS |
GACTGGGCACACCTTCCGCA+TGG | 0.593609 | 3.2:-23415 | None:intergenic |
ATGTGTTTGAGCTGATCAAG+AGG | 0.597303 | 3.2:+23222 | MS.gene009270:CDS |
TCTTTGTCTTGAATGGGCGA+GGG | 0.598003 | 3.2:-23490 | None:intergenic |
ATCGCACTCCAAAATTCTCA+AGG | 0.598710 | 3.2:+24377 | MS.gene009270:CDS |
ACAAGTTGCAGCAATTTGCA+CGG | 0.599452 | 3.2:+23262 | MS.gene009270:CDS |
TACTCCTATGAAAAGTTCCA+GGG | 0.613948 | 3.2:+24080 | MS.gene009270:CDS |
AAGAAACAATGAAGACTCAC+CGG | 0.615286 | 3.2:+21671 | None:intergenic |
GCTACAGTTACTGTTCCTGA+TGG | 0.628443 | 3.2:+23832 | MS.gene009270:CDS |
AGTTCCAGGGTTGAAACAAG+TGG | 0.632824 | 3.2:+24093 | MS.gene009270:CDS |
TCATCAATGCGAATAACGAG+TGG | 0.633101 | 3.2:+23152 | MS.gene009270:CDS |
AAACTCTCAAGGAAAGCAGT+GGG | 0.637619 | 3.2:+23097 | MS.gene009270:CDS |
CATTCATCATCACAGTAGAG+AGG | 0.649717 | 3.2:-24588 | None:intergenic |
AAAAGTCACAATGTTTCGTG+CGG | 0.653466 | 3.2:+24550 | MS.gene009270:CDS |
AAGGACAACAATCTGACACA+TGG | 0.654644 | 3.2:+24482 | MS.gene009270:CDS |
TGGGCACACCTTCCGCATGG+AGG | 0.664596 | 3.2:-23412 | None:intergenic |
GAAATGGGACTGACGAAATG+TGG | 0.673053 | 3.2:+22632 | MS.gene009270:CDS |
ATTGCAATGCAGCCTCCATG+CGG | 0.701402 | 3.2:+23400 | MS.gene009270:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTTTTTATTCTTATCAT+CGG | - | chr3.2:23590-23609 | None:intergenic | 10.0% |
!! | ACACAAATTATTTACAAATT+TGG | - | chr3.2:22361-22380 | None:intergenic | 15.0% |
!! | ATGAGTTTATAAATAGATTT+GGG | + | chr3.2:22558-22577 | MS.gene009270:CDS | 15.0% |
!! | ATTAATTATTAGTGTATGTT+TGG | + | chr3.2:21984-22003 | MS.gene009270:intron | 15.0% |
!! | CACAAATTATTTACAAATTT+GGG | - | chr3.2:22360-22379 | None:intergenic | 15.0% |
!! | TATTATATTTGATGTAACTT+CGG | + | chr3.2:23996-24015 | MS.gene009270:CDS | 15.0% |
!!! | CAATTTTTGAACAAAAATAA+GGG | - | chr3.2:24203-24222 | None:intergenic | 15.0% |
!!! | TTTTTTTTATTCTTATCATC+GGG | - | chr3.2:23589-23608 | None:intergenic | 15.0% |
!! | AATCTATTTATAAACTCATC+TGG | - | chr3.2:22557-22576 | None:intergenic | 20.0% |
!! | ATGAGTTTATAACAAGATTT+GGG | + | chr3.2:23791-23810 | MS.gene009270:CDS | 20.0% |
!! | GATGAGTTTATAAATAGATT+TGG | + | chr3.2:22557-22576 | MS.gene009270:CDS | 20.0% |
!! | TATTGTATTTCGAATACAAA+AGG | + | chr3.2:23125-23144 | MS.gene009270:CDS | 20.0% |
!!! | AATGAAAATAAGGGTTTTTT+GGG | - | chr3.2:22895-22914 | None:intergenic | 20.0% |
!!! | ATGTTTGAACTAATTTTTGT+GGG | - | chr3.2:22402-22421 | None:intergenic | 20.0% |
!!! | ATGTTTGAGTTATATACTTA+CGG | + | chr3.2:22981-23000 | MS.gene009270:intron | 20.0% |
!!! | CATTTTATAAACCTACAAAT+TGG | + | chr3.2:22116-22135 | MS.gene009270:intron | 20.0% |
!!! | GAATTTTACTTTGTAGTTTT+TGG | + | chr3.2:24244-24263 | MS.gene009270:intron | 20.0% |
!!! | GCAATTTTTGAACAAAAATA+AGG | - | chr3.2:24204-24223 | None:intergenic | 20.0% |
!!! | TAAAAAGTATTTGATGCTAA+TGG | + | chr3.2:23058-23077 | MS.gene009270:CDS | 20.0% |
!!! | TTTTAGATTTCAAGTATGAA+GGG | + | chr3.2:22723-22742 | MS.gene009270:CDS | 20.0% |
!!! | TTTTTAGATTTCAAGTATGA+AGG | + | chr3.2:22722-22741 | MS.gene009270:CDS | 20.0% |
!!! | TTTTTTTATTCTTATCATCG+GGG | - | chr3.2:23588-23607 | None:intergenic | 20.0% |
! | AAAAAGCTCAAAATCAAGTT+TGG | + | chr3.2:24126-24145 | MS.gene009270:CDS | 25.0% |
! | AAATACTATTCGTTAGGATA+TGG | + | chr3.2:23928-23947 | MS.gene009270:CDS | 25.0% |
! | AATGACAGAAAATGAAGTAA+GGG | + | chr3.2:23438-23457 | MS.gene009270:CDS | 25.0% |
! | ACTACTTCAAAACATCAAAT+TGG | + | chr3.2:23684-23703 | MS.gene009270:intron | 25.0% |
! | ATCAATCAAACTTCAAAAGA+GGG | - | chr3.2:22490-22509 | None:intergenic | 25.0% |
! | ATTCTCAATGCAAATAACAA+TGG | + | chr3.2:24442-24461 | MS.gene009270:CDS | 25.0% |
! | ATTTGCATTGAGAATGATTT+GGG | - | chr3.2:24437-24456 | None:intergenic | 25.0% |
! | CTACTTCAAAACATCAAATT+GGG | + | chr3.2:23685-23704 | MS.gene009270:intron | 25.0% |
! | CTATAATACCAAACTTCAAA+AGG | - | chr3.2:23733-23752 | None:intergenic | 25.0% |
! | GATGAGTTTATAACAAGATT+TGG | + | chr3.2:23790-23809 | MS.gene009270:CDS | 25.0% |
! | GGTATTATAGTATAACCAAT+AGG | + | chr3.2:23743-23762 | MS.gene009270:intron | 25.0% |
! | TACATATCTTTCAAATACGA+AGG | + | chr3.2:23955-23974 | MS.gene009270:CDS | 25.0% |
! | TACTTCAAAACATCAAATTG+GGG | + | chr3.2:23686-23705 | MS.gene009270:intron | 25.0% |
! | TATGGCTTTCATAAAATGTT+TGG | - | chr3.2:21740-21759 | None:intergenic | 25.0% |
! | TATTTGCATTGAGAATGATT+TGG | - | chr3.2:24438-24457 | None:intergenic | 25.0% |
! | TTCTCAATGCAAATAACAAT+GGG | + | chr3.2:24443-24462 | MS.gene009270:CDS | 25.0% |
! | TTGTTGTCCTTTACAAATTT+CGG | - | chr3.2:24473-24492 | None:intergenic | 25.0% |
! | TTTGCAAAATACTATTCGTT+AGG | + | chr3.2:23922-23941 | MS.gene009270:CDS | 25.0% |
!! | AATCTTGTTATAAACTCATC+TGG | - | chr3.2:23790-23809 | None:intergenic | 25.0% |
!! | AATGACATTTTCTTTTGCAA+CGG | + | chr3.2:23889-23908 | MS.gene009270:CDS | 25.0% |
!! | AATGCTCATACTACTTATTT+TGG | + | chr3.2:21869-21888 | MS.gene009270:intron | 25.0% |
!! | ACGGATTTTGAATGAAAATA+AGG | - | chr3.2:22905-22924 | None:intergenic | 25.0% |
!! | CATGTTTGAACTAATTTTTG+TGG | - | chr3.2:22403-22422 | None:intergenic | 25.0% |
!! | CGGATTTTGAATGAAAATAA+GGG | - | chr3.2:22904-22923 | None:intergenic | 25.0% |
!! | TTCATCAGTTTTACTACTAT+AGG | - | chr3.2:22513-22532 | None:intergenic | 25.0% |
!!! | ACTATTTCTTTTGTATGATC+TGG | - | chr3.2:21772-21791 | None:intergenic | 25.0% |
!!! | GAACAAAAATAAGGGTTTTT+TGG | - | chr3.2:24195-24214 | None:intergenic | 25.0% |
!!! | GAATGAAAATAAGGGTTTTT+TGG | - | chr3.2:22896-22915 | None:intergenic | 25.0% |
!!! | GATTTCACTTTCTAGTTTTT+TGG | + | chr3.2:22946-22965 | MS.gene009270:intron | 25.0% |
!!! | GTTTTTTGGATTGAATTCAT+TGG | - | chr3.2:24181-24200 | None:intergenic | 25.0% |
AACAGTAACTCAAAACAGAA+AGG | - | chr3.2:23529-23548 | None:intergenic | 30.0% | |
AAGGGAAAACAATCTATTAG+AGG | + | chr3.2:23190-23209 | MS.gene009270:CDS | 30.0% | |
AATACCAAACTTCAAAAGGA+GGG | - | chr3.2:23729-23748 | None:intergenic | 30.0% | |
AATGGAGATCAAAGCATAAA+GGG | + | chr3.2:22821-22840 | MS.gene009270:CDS | 30.0% | |
ACAGTAACTCAAAACAGAAA+GGG | - | chr3.2:23528-23547 | None:intergenic | 30.0% | |
ACTATCTCTTTGTCTTGAAT+GGG | - | chr3.2:23499-23518 | None:intergenic | 30.0% | |
AGGGAAAACAATCTATTAGA+GGG | + | chr3.2:23191-23210 | MS.gene009270:CDS | 30.0% | |
CAATGACAGAAAATGAAGTA+AGG | + | chr3.2:23437-23456 | MS.gene009270:CDS | 30.0% | |
CTAGACACCTAAATTTGATT+TGG | - | chr3.2:23642-23661 | None:intergenic | 30.0% | |
GAATACTATTCCATCAGTTA+CGG | + | chr3.2:22695-22714 | MS.gene009270:CDS | 30.0% | |
GATCAATCAAACTTCAAAAG+AGG | - | chr3.2:22491-22510 | None:intergenic | 30.0% | |
TAAAAAACAACCGTAACTGA+TGG | - | chr3.2:22708-22727 | None:intergenic | 30.0% | |
TAATACCAAACTTCAAAAGG+AGG | - | chr3.2:23730-23749 | None:intergenic | 30.0% | |
TAATGGAGATCAAAGCATAA+AGG | + | chr3.2:22820-22839 | MS.gene009270:CDS | 30.0% | |
TACTATCTCTTTGTCTTGAA+TGG | - | chr3.2:23500-23519 | None:intergenic | 30.0% | |
TCAATCAAACTTCAAAAGAG+GGG | - | chr3.2:22489-22508 | None:intergenic | 30.0% | |
TGGATTCAGTAAATTTGCAA+GGG | + | chr3.2:23172-23191 | MS.gene009270:CDS | 30.0% | |
TTAGGATATATTCTTCGAGT+CGG | + | chr3.2:22291-22310 | MS.gene009270:intron | 30.0% | |
TTCAAAACTCCAAGTACTAA+TGG | + | chr3.2:22803-22822 | MS.gene009270:CDS | 30.0% | |
TTTCATTCAAAATCCGTCAA+GGG | + | chr3.2:22908-22927 | MS.gene009270:CDS | 30.0% | |
! | AAAATTCTCAAGGAAAGCAT+TGG | + | chr3.2:24387-24406 | MS.gene009270:CDS | 30.0% |
! | AAATGTTTGGAATCTTTCTC+CGG | - | chr3.2:21727-21746 | None:intergenic | 30.0% |
! | AATGCTTTCCTTGAGAATTT+TGG | - | chr3.2:24388-24407 | None:intergenic | 30.0% |
! | ACAGGTTTAGGATATATTCT+AGG | + | chr3.2:22318-22337 | MS.gene009270:intron | 30.0% |
! | ATTTCTTTTGTATGATCTGG+AGG | - | chr3.2:21769-21788 | None:intergenic | 30.0% |
! | CAGGTTTAGGATATATTCTA+GGG | + | chr3.2:22319-22338 | MS.gene009270:intron | 30.0% |
! | TCTTTTAATGTCTGAACTGT+TGG | + | chr3.2:23341-23360 | MS.gene009270:intron | 30.0% |
! | TTTGAACTAATTTTTGTGGG+AGG | - | chr3.2:22399-22418 | None:intergenic | 30.0% |
! | TTTTCATTCAAAATCCGTCA+AGG | + | chr3.2:22907-22926 | MS.gene009270:CDS | 30.0% |
!! | GGAATCGAAACATTTTAAGA+AGG | + | chr3.2:23459-23478 | MS.gene009270:CDS | 30.0% |
!! | TACTTTTTAGCAAAACCAGA+AGG | - | chr3.2:23047-23066 | None:intergenic | 30.0% |
!! | TGTCATGTGTTTTGGATTAA+TGG | + | chr3.2:22055-22074 | MS.gene009270:intron | 30.0% |
!! | TTCATTTTCTGTCATTGACT+GGG | - | chr3.2:23434-23453 | None:intergenic | 30.0% |
!!! | TTAGTACTTGGAGTTTTGAA+TGG | - | chr3.2:22803-22822 | None:intergenic | 30.0% |
AAAAGTCACAATGTTTCGTG+CGG | + | chr3.2:24550-24569 | MS.gene009270:CDS | 35.0% | |
AATTGCTAAGCGAAATCTTG+TGG | + | chr3.2:24218-24237 | MS.gene009270:CDS | 35.0% | |
ATGCAAAAAACTTCGAGTCA+GGG | + | chr3.2:22261-22280 | MS.gene009270:intron | 35.0% | |
CTCAAAACTCTAAGTACCAA+TGG | + | chr3.2:24036-24055 | MS.gene009270:CDS | 35.0% | |
CTTTGATCTCCATTAGTACT+TGG | - | chr3.2:22815-22834 | None:intergenic | 35.0% | |
GACGTGTCCAAATCAAATTT+AGG | + | chr3.2:23632-23651 | MS.gene009270:intron | 35.0% | |
GCTATCATTATTGTTCCTGA+TGG | + | chr3.2:22599-22618 | MS.gene009270:CDS | 35.0% | |
GGGATTTCCGAAATTTGTAA+AGG | + | chr3.2:24463-24482 | MS.gene009270:CDS | 35.0% | |
GTGGATTCAGTAAATTTGCA+AGG | + | chr3.2:23171-23190 | MS.gene009270:CDS | 35.0% | |
TACTCCTATGAAAAGTTCCA+GGG | + | chr3.2:24080-24099 | MS.gene009270:CDS | 35.0% | |
TAGGATATATTCTTCGAGTC+GGG | + | chr3.2:22292-22311 | MS.gene009270:intron | 35.0% | |
! | ACATTTTCTTTTGCAACGGA+TGG | + | chr3.2:23893-23912 | MS.gene009270:CDS | 35.0% |
! | ACGTTTTCCTTAGCAACAAT+TGG | + | chr3.2:22660-22679 | MS.gene009270:CDS | 35.0% |
! | ATTGTGACTTTTAGCACAAC+CGG | - | chr3.2:24542-24561 | None:intergenic | 35.0% |
! | CTTCATTTTCTGTCATTGAC+TGG | - | chr3.2:23435-23454 | None:intergenic | 35.0% |
! | TGAACTGTTGGTGAACTTAA+TGG | + | chr3.2:23353-23372 | MS.gene009270:intron | 35.0% |
! | TGAGTATGTGTCATGTGTTT+TGG | + | chr3.2:22047-22066 | MS.gene009270:intron | 35.0% |
!! | ACATGCTTTTAAAAGTGCAG+AGG | + | chr3.2:24149-24168 | MS.gene009270:CDS | 35.0% |
!! | ACTCTAACTCTGAAACTTTG+AGG | + | chr3.2:21839-21858 | MS.gene009270:intron | 35.0% |
!! | TTGTGTGTTTGAGTTGATCA+AGG | + | chr3.2:24511-24530 | MS.gene009270:CDS | 35.0% |
!!! | GTTTTTTGGGTTGAATTCAC+TGG | - | chr3.2:22882-22901 | None:intergenic | 35.0% |
!!! | TTGGTACTTAGAGTTTTGAG+TGG | - | chr3.2:24036-24055 | None:intergenic | 35.0% |
AAAACTCTCAAGGAAAGCAG+TGG | + | chr3.2:23096-23115 | MS.gene009270:CDS | 40.0% | |
AAACTCTCAAGGAAAGCAGT+GGG | + | chr3.2:23097-23116 | MS.gene009270:CDS | 40.0% | |
AAGGACAACAATCTGACACA+TGG | + | chr3.2:24482-24501 | MS.gene009270:CDS | 40.0% | |
ACAAGTTGCAGCAATTTGCA+CGG | + | chr3.2:23262-23281 | MS.gene009270:CDS | 40.0% | |
ACTGTTGCCAATTGTTGCTA+AGG | - | chr3.2:22670-22689 | None:intergenic | 40.0% | |
AGGAACGTACTACAGAATGA+AGG | - | chr3.2:23027-23046 | None:intergenic | 40.0% | |
AGGATATATTCTTCGAGTCG+GGG | + | chr3.2:22293-22312 | MS.gene009270:intron | 40.0% | |
ATCGCACTCCAAAATTCTCA+AGG | + | chr3.2:24377-24396 | MS.gene009270:CDS | 40.0% | |
ATGTGTTTGAGCTGATCAAG+AGG | + | chr3.2:23222-23241 | MS.gene009270:CDS | 40.0% | |
ATTCTGTAGTACGTTCCTTC+TGG | + | chr3.2:23029-23048 | MS.gene009270:intron | 40.0% | |
CTACTCCTATGAAAAGTTCC+AGG | + | chr3.2:24079-24098 | MS.gene009270:CDS | 40.0% | |
GATGCAAAAAACTTCGAGTC+AGG | + | chr3.2:22260-22279 | MS.gene009270:intron | 40.0% | |
TCATCAATGCGAATAACGAG+TGG | + | chr3.2:23152-23171 | MS.gene009270:CDS | 40.0% | |
TGCATCCAAACATGATCTGT+AGG | - | chr3.2:22246-22265 | None:intergenic | 40.0% | |
TTCATGCTCCAAAACTCTCA+AGG | + | chr3.2:23086-23105 | MS.gene009270:CDS | 40.0% | |
TTGAGCCTACAGATCATGTT+TGG | + | chr3.2:22238-22257 | MS.gene009270:intron | 40.0% | |
! | ACTGCTTTCCTTGAGAGTTT+TGG | - | chr3.2:23097-23116 | None:intergenic | 40.0% |
! | ATTTTCCAATCACGACCATC+AGG | - | chr3.2:23850-23869 | None:intergenic | 40.0% |
! | CTGGAACTTTTCATAGGAGT+AGG | - | chr3.2:24081-24100 | None:intergenic | 40.0% |
! | CTGTGTGTTTGTTTCTCCAT+TGG | - | chr3.2:24055-24074 | None:intergenic | 40.0% |
! | GCAGCACAATTCACTCTTTT+GGG | - | chr3.2:22860-22879 | None:intergenic | 40.0% |
! | TCAACCCTGGAACTTTTCAT+AGG | - | chr3.2:24087-24106 | None:intergenic | 40.0% |
! | TCTTTTGTATGATCTGGAGG+AGG | - | chr3.2:21766-21785 | None:intergenic | 40.0% |
!!! | ACTCTTTTGGGATCAGAGTT+AGG | - | chr3.2:22848-22867 | None:intergenic | 40.0% |
!!! | GTTACCCTCCTTTTGAAGTT+TGG | + | chr3.2:23722-23741 | MS.gene009270:intron | 40.0% |
!!! | TGAGAATTTTGGAGTGCGAT+TGG | - | chr3.2:24377-24396 | None:intergenic | 40.0% |
!!! | TGAGAGTTTTGGAGCATGAA+CGG | - | chr3.2:23086-23105 | None:intergenic | 40.0% |
AGTTCCAGGGTTGAAACAAG+TGG | + | chr3.2:24093-24112 | MS.gene009270:CDS | 45.0% | |
ATGATCTGGAGGAGGAAGTA+TGG | - | chr3.2:21758-21777 | None:intergenic | 45.0% | |
ATGTTTCGTGCGGTTGACTA+CGG | + | chr3.2:24560-24579 | MS.gene009270:CDS | 45.0% | |
ATTTCCCATTCACGACCATC+AGG | - | chr3.2:22617-22636 | None:intergenic | 45.0% | |
CGTACTACAGAATGAAGGAG+AGG | - | chr3.2:23022-23041 | None:intergenic | 45.0% | |
CTGCAGTGATAACAGCCTAT+TGG | - | chr3.2:23761-23780 | None:intergenic | 45.0% | |
GAAATGGGACTGACGAAATG+TGG | + | chr3.2:22632-22651 | MS.gene009270:CDS | 45.0% | |
GATGGTCGTGAATGGGAAAT+GGG | + | chr3.2:22617-22636 | MS.gene009270:CDS | 45.0% | |
GCAACTTGTAGCACAACAAC+AGG | - | chr3.2:23251-23270 | None:intergenic | 45.0% | |
GCTACAGTTACTGTTCCTGA+TGG | + | chr3.2:23832-23851 | MS.gene009270:CDS | 45.0% | |
TCTTTGTCTTGAATGGGCGA+GGG | - | chr3.2:23493-23512 | None:intergenic | 45.0% | |
TGATGGTCGTGAATGGGAAA+TGG | + | chr3.2:22616-22635 | MS.gene009270:CDS | 45.0% | |
TGGAGTGCGATTGGAACATT+TGG | - | chr3.2:24368-24387 | None:intergenic | 45.0% | |
TGTTCCTGATGGTCGTGAAT+GGG | + | chr3.2:22610-22629 | MS.gene009270:CDS | 45.0% | |
TTGTTCCTGATGGTCGTGAA+TGG | + | chr3.2:22609-22628 | MS.gene009270:CDS | 45.0% | |
! | GGCAGCACAATTCACTCTTT+TGG | - | chr3.2:22861-22880 | None:intergenic | 45.0% |
!! | TGAGTTGATCAAGGAGAAGC+CGG | + | chr3.2:24520-24539 | MS.gene009270:CDS | 45.0% |
!!! | ATCCGTCAAGGGCATTTTTG+CGG | + | chr3.2:22919-22938 | MS.gene009270:CDS | 45.0% |
!!! | GTGGGAGGCAACATTGATTT+TGG | - | chr3.2:22384-22403 | None:intergenic | 45.0% |
!! | AAAAATAAATATAAAACAAT+AGG | - | chr3.2:21916-21935 | None:intergenic | 5.0% |
ATTGCAATGCAGCCTCCATG+CGG | + | chr3.2:23400-23419 | MS.gene009270:intron | 50.0% | |
CACCGCAAAAATGCCCTTGA+CGG | - | chr3.2:22924-22943 | None:intergenic | 50.0% | |
CTCTTTGTCTTGAATGGGCG+AGG | - | chr3.2:23494-23513 | None:intergenic | 50.0% | |
CTGTTCCTGATGGTCGTGAT+TGG | + | chr3.2:23842-23861 | MS.gene009270:CDS | 50.0% | |
TACAAATTGGAGCCTCTCCG+CGG | + | chr3.2:22129-22148 | MS.gene009270:intron | 50.0% | |
TCGAGTCAGGGCTACAAGTT+AGG | + | chr3.2:22273-22292 | MS.gene009270:intron | 50.0% | |
TTGAATGGGCGAGGGAAGTA+TGG | - | chr3.2:23485-23504 | None:intergenic | 50.0% | |
TTGGAATCTTTCTCCGGTGC+CGG | - | chr3.2:21721-21740 | None:intergenic | 50.0% | |
! | ACTGCCACTTGTTTCAACCC+TGG | - | chr3.2:24100-24119 | None:intergenic | 50.0% |
! | ATGTTGTGATGACGAGTCCG+CGG | - | chr3.2:22149-22168 | None:intergenic | 50.0% |
!!! | TCAAGGGCATTTTTGCGGTG+AGG | + | chr3.2:22924-22943 | MS.gene009270:intron | 50.0% |
ATTCTTCGAGTCGGGGCAAC+AGG | + | chr3.2:22300-22319 | MS.gene009270:intron | 55.0% | |
GCGACGGAACACATCTTTGC+CGG | - | chr3.2:21693-21712 | None:intergenic | 55.0% | |
GCGGAGAGGCTCCAATTTGT+AGG | - | chr3.2:22130-22149 | None:intergenic | 55.0% | |
ATGTGTTCCGTCGCCGTCAC+CGG | + | chr3.2:21699-21718 | MS.gene009270:CDS | 60.0% | |
CAATGCAGCCTCCATGCGGA+AGG | + | chr3.2:23404-23423 | MS.gene009270:intron | 60.0% | |
CGAGTCGGGGCAACAGGTTT+AGG | + | chr3.2:22306-22325 | MS.gene009270:intron | 60.0% | |
!! | TCTTTCTCCGGTGCCGGTGA+CGG | - | chr3.2:21715-21734 | None:intergenic | 60.0% |
GACTGGGCACACCTTCCGCA+TGG | - | chr3.2:23418-23437 | None:intergenic | 65.0% | |
TGGGCACACCTTCCGCATGG+AGG | - | chr3.2:23415-23434 | None:intergenic | 65.0% | |
! | GTGATGACGAGTCCGCGGAG+AGG | - | chr3.2:22144-22163 | None:intergenic | 65.0% |
TCCGTCGCCGTCACCGGCAC+CGG | + | chr3.2:21705-21724 | MS.gene009270:CDS | 75.0% | |
!! | TCCGGTGCCGGTGACGGCGA+CGG | - | chr3.2:21709-21728 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 21679 | 24601 | 21679 | ID=MS.gene009270 |
chr3.2 | mRNA | 21679 | 24601 | 21679 | ID=MS.gene009270.t1;Parent=MS.gene009270 |
chr3.2 | exon | 21679 | 21789 | 21679 | ID=MS.gene009270.t1.exon1;Parent=MS.gene009270.t1 |
chr3.2 | CDS | 21679 | 21789 | 21679 | ID=cds.MS.gene009270.t1;Parent=MS.gene009270.t1 |
chr3.2 | exon | 22548 | 22940 | 22548 | ID=MS.gene009270.t1.exon2;Parent=MS.gene009270.t1 |
chr3.2 | CDS | 22548 | 22940 | 22548 | ID=cds.MS.gene009270.t1;Parent=MS.gene009270.t1 |
chr3.2 | exon | 23038 | 23283 | 23038 | ID=MS.gene009270.t1.exon3;Parent=MS.gene009270.t1 |
chr3.2 | CDS | 23038 | 23283 | 23038 | ID=cds.MS.gene009270.t1;Parent=MS.gene009270.t1 |
chr3.2 | exon | 23412 | 23516 | 23412 | ID=MS.gene009270.t1.exon4;Parent=MS.gene009270.t1 |
chr3.2 | CDS | 23412 | 23516 | 23412 | ID=cds.MS.gene009270.t1;Parent=MS.gene009270.t1 |
chr3.2 | exon | 23781 | 24239 | 23781 | ID=MS.gene009270.t1.exon5;Parent=MS.gene009270.t1 |
chr3.2 | CDS | 23781 | 24239 | 23781 | ID=cds.MS.gene009270.t1;Parent=MS.gene009270.t1 |
chr3.2 | exon | 24329 | 24601 | 24329 | ID=MS.gene009270.t1.exon6;Parent=MS.gene009270.t1 |
chr3.2 | CDS | 24329 | 24601 | 24329 | ID=cds.MS.gene009270.t1;Parent=MS.gene009270.t1 |
Gene Sequence |
Protein sequence |