Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009313.t1 | KEH32792.1 | 66.1 | 257 | 30 | 3 | 1 | 200 | 1 | 257 | 1.60E-78 | 302.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009313.t1 | Q9SRH9 | 37.7 | 159 | 74 | 3 | 48 | 186 | 51 | 204 | 4.3e-16 | 86.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009313.t1 | A0A072UT33 | 66.1 | 257 | 30 | 3 | 1 | 200 | 1 | 257 | 1.1e-78 | 302.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene009313.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009313.t1 | MTR_3g006125 | 69.261 | 257 | 22 | 3 | 1 | 200 | 1 | 257 | 1.04e-106 | 307 |
| MS.gene009313.t1 | MTR_3g006185 | 85.714 | 175 | 4 | 1 | 47 | 200 | 1 | 175 | 2.11e-101 | 290 |
| MS.gene009313.t1 | MTR_3g006105 | 79.429 | 175 | 14 | 2 | 47 | 199 | 1 | 175 | 3.80e-89 | 259 |
| MS.gene009313.t1 | MTR_3g006065 | 54.023 | 174 | 51 | 3 | 47 | 199 | 1 | 166 | 5.25e-48 | 155 |
| MS.gene009313.t1 | MTR_3g006150 | 54.878 | 164 | 45 | 3 | 47 | 189 | 1 | 156 | 6.23e-48 | 154 |
| MS.gene009313.t1 | MTR_3g006010 | 56.494 | 154 | 28 | 1 | 47 | 200 | 1 | 115 | 1.55e-38 | 138 |
| MS.gene009313.t1 | MTR_1g105955 | 41.216 | 148 | 76 | 2 | 55 | 192 | 17 | 163 | 4.84e-26 | 99.4 |
| MS.gene009313.t1 | MTR_1g105955 | 49.275 | 69 | 34 | 1 | 54 | 122 | 95 | 162 | 2.95e-12 | 62.8 |
| MS.gene009313.t1 | MTR_4g133300 | 40.476 | 168 | 77 | 4 | 48 | 197 | 83 | 245 | 3.54e-24 | 95.9 |
| MS.gene009313.t1 | MTR_4g133300 | 37.179 | 156 | 83 | 4 | 54 | 198 | 12 | 163 | 2.24e-19 | 83.2 |
| MS.gene009313.t1 | MTR_1g104960 | 38.608 | 158 | 79 | 3 | 52 | 192 | 11 | 167 | 2.09e-23 | 92.0 |
| MS.gene009313.t1 | MTR_1g104960 | 44.000 | 75 | 41 | 1 | 55 | 129 | 100 | 173 | 3.28e-11 | 60.1 |
| MS.gene009313.t1 | MTR_4g133470 | 39.881 | 168 | 78 | 4 | 48 | 197 | 83 | 245 | 1.36e-22 | 92.0 |
| MS.gene009313.t1 | MTR_4g133470 | 35.897 | 156 | 85 | 4 | 54 | 198 | 12 | 163 | 4.25e-17 | 77.0 |
| MS.gene009313.t1 | MTR_1g104940 | 47.664 | 107 | 43 | 2 | 51 | 144 | 9 | 115 | 2.87e-22 | 87.8 |
| MS.gene009313.t1 | MTR_1g104980 | 39.394 | 132 | 78 | 1 | 69 | 198 | 13 | 144 | 1.92e-20 | 84.3 |
| MS.gene009313.t1 | MTR_8g062700 | 40.252 | 159 | 71 | 5 | 48 | 186 | 36 | 190 | 4.00e-20 | 88.2 |
| MS.gene009313.t1 | MTR_8g062700 | 40.252 | 159 | 71 | 5 | 48 | 186 | 36 | 190 | 4.16e-20 | 88.2 |
| MS.gene009313.t1 | MTR_1g104937 | 50.538 | 93 | 41 | 2 | 52 | 144 | 10 | 97 | 7.22e-18 | 75.9 |
| MS.gene009313.t1 | MTR_7g013380 | 30.435 | 161 | 94 | 2 | 54 | 196 | 99 | 259 | 1.33e-17 | 79.3 |
| MS.gene009313.t1 | MTR_7g013380 | 32.335 | 167 | 95 | 2 | 48 | 196 | 7 | 173 | 2.58e-17 | 78.6 |
| MS.gene009313.t1 | MTR_7g013380 | 37.634 | 93 | 57 | 1 | 47 | 138 | 178 | 270 | 5.96e-14 | 69.3 |
| MS.gene009313.t1 | MTR_5g036670 | 37.580 | 157 | 80 | 4 | 48 | 187 | 37 | 192 | 1.39e-17 | 80.9 |
| MS.gene009313.t1 | MTR_6g008970 | 36.875 | 160 | 75 | 4 | 48 | 186 | 57 | 211 | 7.18e-17 | 78.6 |
| MS.gene009313.t1 | MTR_6g008995 | 33.728 | 169 | 85 | 4 | 48 | 196 | 31 | 192 | 7.19e-17 | 78.2 |
| MS.gene009313.t1 | MTR_8g062350 | 51.948 | 77 | 36 | 1 | 48 | 124 | 8 | 83 | 1.90e-16 | 74.3 |
| MS.gene009313.t1 | MTR_1g105960 | 44.762 | 105 | 48 | 3 | 55 | 159 | 2 | 96 | 5.82e-15 | 68.2 |
| MS.gene009313.t1 | MTR_1g105960 | 51.613 | 62 | 29 | 1 | 134 | 195 | 12 | 72 | 7.67e-11 | 57.4 |
| MS.gene009313.t1 | MTR_1g105010 | 38.636 | 88 | 53 | 1 | 47 | 134 | 9 | 95 | 6.25e-12 | 60.5 |
| MS.gene009313.t1 | MTR_1g109550 | 35.115 | 131 | 75 | 3 | 52 | 174 | 14 | 142 | 6.91e-12 | 60.8 |
| MS.gene009313.t1 | MTR_6g008995 | 31.429 | 140 | 70 | 3 | 77 | 196 | 2 | 135 | 5.76e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009313.t1 | AT3G01320 | 37.736 | 159 | 74 | 3 | 48 | 186 | 51 | 204 | 3.31e-19 | 85.5 |
| MS.gene009313.t1 | AT3G01320 | 37.736 | 159 | 74 | 3 | 48 | 186 | 51 | 204 | 3.68e-19 | 85.5 |
| MS.gene009313.t1 | AT1G70030 | 36.986 | 146 | 72 | 5 | 42 | 186 | 10 | 136 | 2.61e-18 | 77.8 |
| MS.gene009313.t1 | AT1G24230 | 32.075 | 159 | 90 | 3 | 50 | 198 | 10 | 160 | 9.64e-18 | 79.0 |
| MS.gene009313.t1 | AT1G70060 | 45.192 | 104 | 54 | 2 | 48 | 151 | 8 | 108 | 7.41e-17 | 78.6 |
| MS.gene009313.t1 | AT1G70060 | 45.192 | 104 | 54 | 2 | 48 | 151 | 8 | 108 | 7.41e-17 | 78.6 |
| MS.gene009313.t1 | AT1G70030 | 36.250 | 160 | 74 | 5 | 48 | 186 | 5 | 157 | 2.83e-16 | 73.2 |
| MS.gene009313.t1 | AT5G15020 | 33.962 | 159 | 79 | 3 | 48 | 186 | 46 | 198 | 3.70e-16 | 76.6 |
| MS.gene009313.t1 | AT5G15020 | 33.962 | 159 | 79 | 3 | 48 | 186 | 46 | 198 | 3.99e-16 | 76.6 |
| MS.gene009313.t1 | AT1G24190 | 35.032 | 157 | 82 | 4 | 48 | 186 | 8 | 162 | 1.13e-15 | 75.1 |
| MS.gene009313.t1 | AT1G24190 | 35.032 | 157 | 82 | 4 | 48 | 186 | 8 | 162 | 1.19e-15 | 75.1 |
| MS.gene009313.t1 | AT1G24190 | 35.032 | 157 | 82 | 4 | 48 | 186 | 8 | 162 | 1.33e-15 | 75.1 |
| MS.gene009313.t1 | AT1G70030 | 40.179 | 112 | 58 | 3 | 42 | 151 | 10 | 114 | 1.21e-14 | 67.8 |
| MS.gene009313.t1 | AT1G10450 | 36.913 | 149 | 76 | 4 | 54 | 186 | 84 | 230 | 2.26e-14 | 71.2 |
| MS.gene009313.t1 | AT1G10450 | 36.913 | 149 | 76 | 4 | 54 | 186 | 33 | 179 | 2.85e-14 | 71.2 |
| MS.gene009313.t1 | AT1G10450 | 36.913 | 149 | 76 | 4 | 54 | 186 | 33 | 179 | 2.85e-14 | 71.2 |
| MS.gene009313.t1 | AT5G15025 | 47.059 | 85 | 39 | 2 | 50 | 134 | 43 | 121 | 5.45e-13 | 63.5 |
| MS.gene009313.t1 | AT1G59890 | 50.704 | 71 | 34 | 1 | 54 | 124 | 45 | 114 | 5.61e-13 | 67.4 |
| MS.gene009313.t1 | AT1G59890 | 50.704 | 71 | 34 | 1 | 54 | 124 | 45 | 114 | 5.73e-13 | 67.4 |
| MS.gene009313.t1 | AT1G59890 | 50.704 | 71 | 34 | 1 | 54 | 124 | 45 | 114 | 5.78e-13 | 67.4 |
| MS.gene009313.t1 | AT1G59890 | 50.704 | 71 | 34 | 1 | 54 | 124 | 45 | 114 | 5.84e-13 | 67.4 |
| MS.gene009313.t1 | AT4G12020 | 41.667 | 84 | 46 | 2 | 47 | 130 | 301 | 381 | 1.10e-12 | 66.6 |
| MS.gene009313.t1 | AT4G12020 | 41.667 | 84 | 46 | 2 | 47 | 130 | 301 | 381 | 1.37e-12 | 66.2 |
| MS.gene009313.t1 | AT4G12020 | 41.667 | 84 | 46 | 2 | 47 | 130 | 301 | 381 | 1.37e-12 | 66.2 |
| MS.gene009313.t1 | AT4G12020 | 41.667 | 84 | 46 | 2 | 47 | 130 | 301 | 381 | 1.49e-12 | 66.2 |
| MS.gene009313.t1 | AT4G12020 | 41.667 | 84 | 46 | 2 | 47 | 130 | 301 | 381 | 1.50e-12 | 66.2 |
| MS.gene009313.t1 | AT4G12020 | 41.667 | 84 | 46 | 2 | 47 | 130 | 301 | 381 | 1.54e-12 | 66.2 |
| MS.gene009313.t1 | AT4G12020 | 41.667 | 84 | 46 | 2 | 47 | 130 | 234 | 314 | 1.59e-12 | 66.2 |
| MS.gene009313.t1 | AT4G12020 | 41.667 | 84 | 46 | 2 | 47 | 130 | 301 | 381 | 1.74e-12 | 65.9 |
| MS.gene009313.t1 | AT4G12020 | 41.667 | 84 | 46 | 2 | 47 | 130 | 301 | 381 | 1.74e-12 | 65.9 |
| MS.gene009313.t1 | AT4G12020 | 41.667 | 84 | 46 | 2 | 47 | 130 | 301 | 381 | 1.75e-12 | 65.9 |
| MS.gene009313.t1 | AT4G12020 | 41.667 | 84 | 46 | 2 | 47 | 130 | 301 | 381 | 1.77e-12 | 65.9 |
| MS.gene009313.t1 | AT1G24200 | 31.646 | 158 | 81 | 3 | 49 | 186 | 9 | 159 | 5.80e-12 | 62.4 |
| MS.gene009313.t1 | AT1G27220 | 38.384 | 99 | 60 | 1 | 49 | 147 | 9 | 106 | 2.48e-11 | 60.5 |
Find 45 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGGCATACGGATTTAATTT+TGG | 0.145300 | 3.1:-1380615 | MS.gene009313:CDS |
| ATTTCGAAATTAAATCTTCA+TGG | 0.307910 | 3.1:+1380881 | None:intergenic |
| GGTGTGATTCGATATTTCTT+TGG | 0.344227 | 3.1:+1380575 | None:intergenic |
| TTTAAGGCCCCTAGATTTGT+TGG | 0.365910 | 3.1:-1381270 | MS.gene009313:intron |
| ACAAATTATGAAGGATTTCA+AGG | 0.367445 | 3.1:-1380959 | MS.gene009313:CDS |
| GTAGGTTTGGATTTGAGAAA+AGG | 0.371809 | 3.1:-1381002 | MS.gene009313:CDS |
| CCACTGTTTATTTGTCATAC+AGG | 0.376845 | 3.1:-1382131 | MS.gene009313:intron |
| ATTAAGAGTGTACGAGTTGT+TGG | 0.382597 | 3.1:-1380908 | MS.gene009313:CDS |
| TAACCGGTGTCAAGCTGAAC+TGG | 0.385684 | 3.1:+1380551 | None:intergenic |
| TGAGAGCTTCTTCATCTTGA+AGG | 0.407470 | 3.1:+1381062 | None:intergenic |
| TAAAATTGTTAAGGATTTCA+AGG | 0.408599 | 3.1:-1380690 | MS.gene009313:intron |
| GCAGCAGTTAAACGTAGGTT+TGG | 0.408891 | 3.1:-1381015 | MS.gene009313:CDS |
| TAGGTTTGGATTTGAGAAAA+GGG | 0.438311 | 3.1:-1381001 | MS.gene009313:CDS |
| CTAGATTTGTTGGGCCGGCT+CGG | 0.442856 | 3.1:-1381260 | MS.gene009313:intron |
| ATTGTTAAGGATTTCAAGGC+TGG | 0.451018 | 3.1:-1380686 | MS.gene009313:intron |
| TCGATATTTCTTTGGCAAGA+AGG | 0.460534 | 3.1:+1380583 | None:intergenic |
| TTAAGGCCCCTAGATTTGTT+GGG | 0.472029 | 3.1:-1381269 | MS.gene009313:intron |
| GAAGTTTAATAGACTTGAGT+CGG | 0.483725 | 3.1:+1381229 | None:intergenic |
| ATATGAAATCAAACTTCCAT+TGG | 0.495726 | 3.1:-1380836 | MS.gene009313:CDS |
| AATAATGGTAGGCTACTAAC+CGG | 0.503832 | 3.1:+1380535 | None:intergenic |
| AAGTTTAATAGACTTGAGTC+GGG | 0.507904 | 3.1:+1381230 | None:intergenic |
| TCATCGTCGTCACGATCCAA+TGG | 0.515446 | 3.1:+1380820 | None:intergenic |
| AGAGGGAATGATCTGCTTCA+AGG | 0.517258 | 3.1:-1380635 | MS.gene009313:CDS |
| GGCCCCTAGATTTGTTGGGC+CGG | 0.521952 | 3.1:-1381265 | MS.gene009313:intron |
| GAGAGCTTCTTCATCTTGAA+GGG | 0.526319 | 3.1:+1381063 | None:intergenic |
| GGCTGAAAGAATTGATGCTA+GGG | 0.533185 | 3.1:-1380938 | MS.gene009313:CDS |
| AGGCTGAAAGAATTGATGCT+AGG | 0.540112 | 3.1:-1380939 | MS.gene009313:CDS |
| GAGGGAATGATCTGCTTCAA+GGG | 0.542159 | 3.1:-1380634 | MS.gene009313:CDS |
| AGTTTGATTTCATATTCAGT+TGG | 0.545841 | 3.1:+1380844 | None:intergenic |
| TGATCTGCTTCAAGGGCATA+CGG | 0.554583 | 3.1:-1380627 | MS.gene009313:CDS |
| ATAAGTGTTGCTGCGGCAAG+AGG | 0.559399 | 3.1:-1380653 | MS.gene009313:CDS |
| GCGGCGACAGAGCTGAAATG+AGG | 0.561452 | 3.1:+1381201 | None:intergenic |
| CTCTGTCGCCGCAGATACAA+CGG | 0.569683 | 3.1:-1381190 | MS.gene009313:intron |
| AAGATGAAGAAGCTCTCAGT+TGG | 0.573928 | 3.1:-1381057 | MS.gene009313:CDS |
| CGGCGACAGAGCTGAAATGA+GGG | 0.577875 | 3.1:+1381202 | None:intergenic |
| GACGATGATGACGAACTACA+AGG | 0.589561 | 3.1:-1380805 | MS.gene009313:CDS |
| AGTCGGGTTCATCACCGAGC+CGG | 0.598850 | 3.1:+1381246 | None:intergenic |
| TAAGTGTTGCTGCGGCAAGA+GGG | 0.604842 | 3.1:-1380652 | MS.gene009313:CDS |
| GAAGCATACCGTTGTATCTG+CGG | 0.624777 | 3.1:+1381182 | None:intergenic |
| AGAGTGTACGAGTTGTTGGA+CGG | 0.625456 | 3.1:-1380904 | MS.gene009313:CDS |
| CCTCCAGTTCAGCTTGACAC+CGG | 0.627356 | 3.1:-1380554 | MS.gene009313:CDS |
| AATTGATATAAGTGTTGCTG+CGG | 0.644511 | 3.1:-1380660 | MS.gene009313:CDS |
| CCGGTGTCAAGCTGAACTGG+AGG | 0.668666 | 3.1:+1380554 | None:intergenic |
| TACTCGCAGCAGTTAAACGT+AGG | 0.669963 | 3.1:-1381020 | MS.gene009313:CDS |
| CCTGTATGACAAATAAACAG+TGG | 0.682580 | 3.1:+1382131 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAATCAAGTTAATTTTT+TGG | - | chr3.1:1380712-1380731 | MS.gene009313:intron | 10.0% |
| !!! | AACTTGATTATTTTTTATTA+CGG | + | chr3.1:1380705-1380724 | None:intergenic | 10.0% |
| !!! | AATAATCAAGTTAATTTTTT+GGG | - | chr3.1:1380713-1380732 | MS.gene009313:intron | 10.0% |
| !!! | TATAATTTAATTTGTATTAG+TGG | - | chr3.1:1380848-1380867 | MS.gene009313:CDS | 10.0% |
| !!! | TTTTTTATAAGAAAAAGTTT+AGG | + | chr3.1:1381282-1381301 | None:intergenic | 10.0% |
| !!! | ATGAGTTTTTAAAATTGTTA+AGG | - | chr3.1:1381997-1382016 | MS.gene009313:intron | 15.0% |
| !! | ACAAAAATGTTGAAATTCAT+AGG | + | chr3.1:1381014-1381033 | None:intergenic | 20.0% |
| !! | AGAAAATTAGTCAATTAAAG+TGG | - | chr3.1:1380769-1380788 | MS.gene009313:CDS | 20.0% |
| !! | ATTTCGAAATTAAATCTTCA+TGG | + | chr3.1:1381818-1381837 | None:intergenic | 20.0% |
| !! | GAAAATTAGTCAATTAAAGT+GGG | - | chr3.1:1380770-1380789 | MS.gene009313:CDS | 20.0% |
| !! | GAACAATATTGAAAAATTTG+AGG | + | chr3.1:1380604-1380623 | None:intergenic | 20.0% |
| !! | TAAAATTGTTAAGGATTTCA+AGG | - | chr3.1:1382006-1382025 | MS.gene009313:intron | 20.0% |
| !! | TTAAACAAAATTTGGAAATG+AGG | + | chr3.1:1381411-1381430 | None:intergenic | 20.0% |
| !! | TTAGTAAAATTTATACCATG+TGG | + | chr3.1:1381059-1381078 | None:intergenic | 20.0% |
| !!! | ATCTTTTCTACAAATTATGA+AGG | - | chr3.1:1381728-1381747 | MS.gene009313:intron | 20.0% |
| !!! | ATTTTGTTGTTGATCTTTAA+AGG | - | chr3.1:1381384-1381403 | MS.gene009313:intron | 20.0% |
| !!! | TCATTTCCAAATTTTGTTTA+AGG | - | chr3.1:1381410-1381429 | MS.gene009313:intron | 20.0% |
| !!! | TGTTTGATTGCTTATAATTT+TGG | - | chr3.1:1380653-1380672 | MS.gene009313:CDS | 20.0% |
| !!! | TTTAATTTGTATTAGTGGTA+AGG | - | chr3.1:1380853-1380872 | MS.gene009313:CDS | 20.0% |
| !!! | TTTTGTTGTTGATCTTTAAA+GGG | - | chr3.1:1381385-1381404 | MS.gene009313:intron | 20.0% |
| ! | AAAGTAAAAGATGTGTTTCA+TGG | - | chr3.1:1381954-1381973 | MS.gene009313:intron | 25.0% |
| ! | ACAAATTATGAAGGATTTCA+AGG | - | chr3.1:1381737-1381756 | MS.gene009313:intron | 25.0% |
| ! | ATATGAAATCAAACTTCCAT+TGG | - | chr3.1:1381860-1381879 | MS.gene009313:intron | 25.0% |
| ! | ATGAAAACAAGTTATAGTGA+AGG | + | chr3.1:1381550-1381569 | None:intergenic | 25.0% |
| ! | TTTGAGAAAAGGGAAAAATA+TGG | - | chr3.1:1381705-1381724 | MS.gene009313:intron | 25.0% |
| !! | AGTTTGATTTCATATTCAGT+TGG | + | chr3.1:1381855-1381874 | None:intergenic | 25.0% |
| AAGTTTAATAGACTTGAGTC+GGG | + | chr3.1:1381469-1381488 | None:intergenic | 30.0% | |
| ACCGTCATTGACATTATTTA+CGG | + | chr3.1:1381124-1381143 | None:intergenic | 30.0% | |
| CTAAAGAAATGTAAAGCTCA+AGG | + | chr3.1:1380885-1380904 | None:intergenic | 30.0% | |
| CTTGAGCTTTACATTTCTTT+AGG | - | chr3.1:1380883-1380902 | MS.gene009313:CDS | 30.0% | |
| GAAGTTTAATAGACTTGAGT+CGG | + | chr3.1:1381470-1381489 | None:intergenic | 30.0% | |
| GTTAGTTATGCTAGAATTTG+TGG | - | chr3.1:1381032-1381051 | MS.gene009313:CDS | 30.0% | |
| TAAATAATGTCAATGACGGT+TGG | - | chr3.1:1381124-1381143 | MS.gene009313:intron | 30.0% | |
| TAGGTTTGGATTTGAGAAAA+GGG | - | chr3.1:1381695-1381714 | MS.gene009313:intron | 30.0% | |
| TATGTAGTATATCATAGACG+TGG | - | chr3.1:1380802-1380821 | MS.gene009313:CDS | 30.0% | |
| TTACATTTCTTTAGGTCACA+CGG | - | chr3.1:1380891-1380910 | MS.gene009313:CDS | 30.0% | |
| ! | AATTGATATAAGTGTTGCTG+CGG | - | chr3.1:1382036-1382055 | MS.gene009313:intron | 30.0% |
| ! | GGTTTAACTTCTAACTTCTT+TGG | - | chr3.1:1380823-1380842 | MS.gene009313:CDS | 30.0% |
| AAGAAATGTAAAGCTCAAGG+AGG | + | chr3.1:1380882-1380901 | None:intergenic | 35.0% | |
| AGTTATAGTGAAGGAAGAGA+AGG | + | chr3.1:1381541-1381560 | None:intergenic | 35.0% | |
| ATTGTTAAGGATTTCAAGGC+TGG | - | chr3.1:1382010-1382029 | MS.gene009313:intron | 35.0% | |
| CCACTGTTTATTTGTCATAC+AGG | - | chr3.1:1380565-1380584 | MS.gene009313:CDS | 35.0% | |
| CCTGTATGACAAATAAACAG+TGG | + | chr3.1:1380568-1380587 | None:intergenic | 35.0% | |
| GACGAAATGCCAATAACAAT+TGG | - | chr3.1:1380931-1380950 | MS.gene009313:CDS | 35.0% | |
| GCCGTAAATAATGTCAATGA+CGG | - | chr3.1:1381120-1381139 | MS.gene009313:intron | 35.0% | |
| GGTGTGATTCGATATTTCTT+TGG | + | chr3.1:1382124-1382143 | None:intergenic | 35.0% | |
| GTAGGGTTTCCAATTGTTAT+TGG | + | chr3.1:1380943-1380962 | None:intergenic | 35.0% | |
| GTAGGTTTGGATTTGAGAAA+AGG | - | chr3.1:1381694-1381713 | MS.gene009313:intron | 35.0% | |
| TAGGGGCCTTAAACAAAATT+TGG | + | chr3.1:1381419-1381438 | None:intergenic | 35.0% | |
| TCGATATTTCTTTGGCAAGA+AGG | + | chr3.1:1382116-1382135 | None:intergenic | 35.0% | |
| TGTGTTTCATGGTAAGAATG+AGG | - | chr3.1:1381965-1381984 | MS.gene009313:intron | 35.0% | |
| ! | ATTAAGAGTGTACGAGTTGT+TGG | - | chr3.1:1381788-1381807 | MS.gene009313:intron | 35.0% |
| ! | TCAATTAAAGTGGGTTCAGA+TGG | - | chr3.1:1380779-1380798 | MS.gene009313:CDS | 35.0% |
| !! | AGGGCATACGGATTTAATTT+TGG | - | chr3.1:1382081-1382100 | MS.gene009313:intron | 35.0% |
| !! | GGGCATACGGATTTAATTTT+GGG | - | chr3.1:1382082-1382101 | MS.gene009313:intron | 35.0% |
| AAGATGAAGAAGCTCTCAGT+TGG | - | chr3.1:1381639-1381658 | MS.gene009313:intron | 40.0% | |
| AGGCTGAAAGAATTGATGCT+AGG | - | chr3.1:1381757-1381776 | MS.gene009313:intron | 40.0% | |
| CTGTTGTGTCATGACATCTT+TGG | - | chr3.1:1381184-1381203 | MS.gene009313:intron | 40.0% | |
| GAGAGCTTCTTCATCTTGAA+GGG | + | chr3.1:1381636-1381655 | None:intergenic | 40.0% | |
| GGCTGAAAGAATTGATGCTA+GGG | - | chr3.1:1381758-1381777 | MS.gene009313:intron | 40.0% | |
| TGAGAGCTTCTTCATCTTGA+AGG | + | chr3.1:1381637-1381656 | None:intergenic | 40.0% | |
| ! | TTAAGGCCCCTAGATTTGTT+GGG | - | chr3.1:1381427-1381446 | MS.gene009313:intron | 40.0% |
| ! | TTTAAGGCCCCTAGATTTGT+TGG | - | chr3.1:1381426-1381445 | MS.gene009313:intron | 40.0% |
| AACCCTACACACACAAGTAG+AGG | - | chr3.1:1380955-1380974 | MS.gene009313:CDS | 45.0% | |
| AGAGGGAATGATCTGCTTCA+AGG | - | chr3.1:1382061-1382080 | MS.gene009313:intron | 45.0% | |
| AGAGTGTACGAGTTGTTGGA+CGG | - | chr3.1:1381792-1381811 | MS.gene009313:intron | 45.0% | |
| ATAGGTCAGACGCACTAAGT+AGG | + | chr3.1:1380996-1381015 | None:intergenic | 45.0% | |
| CTCCTCTACTTGTGTGTGTA+GGG | + | chr3.1:1380960-1380979 | None:intergenic | 45.0% | |
| GAAGCATACCGTTGTATCTG+CGG | + | chr3.1:1381517-1381536 | None:intergenic | 45.0% | |
| GAGGGAATGATCTGCTTCAA+GGG | - | chr3.1:1382062-1382081 | MS.gene009313:intron | 45.0% | |
| GCAGCAGTTAAACGTAGGTT+TGG | - | chr3.1:1381681-1381700 | MS.gene009313:intron | 45.0% | |
| GCTAGAATTTGTGGACCACA+TGG | - | chr3.1:1381041-1381060 | MS.gene009313:CDS | 45.0% | |
| TACACACACAAGTAGAGGAG+CGG | - | chr3.1:1380960-1380979 | MS.gene009313:CDS | 45.0% | |
| TACTCGCAGCAGTTAAACGT+AGG | - | chr3.1:1381676-1381695 | MS.gene009313:intron | 45.0% | |
| TAGGTCAGACGCACTAAGTA+GGG | + | chr3.1:1380995-1381014 | None:intergenic | 45.0% | |
| TGGCTAAACCACATTGTCGT+GGG | - | chr3.1:1381154-1381173 | MS.gene009313:intron | 45.0% | |
| TTGGCTAAACCACATTGTCG+TGG | - | chr3.1:1381153-1381172 | MS.gene009313:intron | 45.0% | |
| ! | AGTTTAGGTGAGTTGAGCTC+CGG | + | chr3.1:1381267-1381286 | None:intergenic | 45.0% |
| ! | GACGATGATGACGAACTACA+AGG | - | chr3.1:1381891-1381910 | MS.gene009313:intron | 45.0% |
| ! | TGATCTGCTTCAAGGGCATA+CGG | - | chr3.1:1382069-1382088 | MS.gene009313:intron | 45.0% |
| AACTTTGCCCTCATGTGTGC+CGG | - | chr3.1:1381245-1381264 | MS.gene009313:CDS | 50.0% | |
| GAGTTGAACCCACGACAATG+TGG | + | chr3.1:1381165-1381184 | None:intergenic | 50.0% | |
| GCTCCTCTACTTGTGTGTGT+AGG | + | chr3.1:1380961-1380980 | None:intergenic | 50.0% | |
| TCATCGTCGTCACGATCCAA+TGG | + | chr3.1:1381879-1381898 | None:intergenic | 50.0% | |
| ! | ATAAGTGTTGCTGCGGCAAG+AGG | - | chr3.1:1382043-1382062 | MS.gene009313:intron | 50.0% |
| ! | CAATGACGGTTGGCTGAAGT+TGG | - | chr3.1:1381134-1381153 | MS.gene009313:intron | 50.0% |
| ! | TAACCGGTGTCAAGCTGAAC+TGG | + | chr3.1:1382148-1382167 | None:intergenic | 50.0% |
| ! | TAAGTGTTGCTGCGGCAAGA+GGG | - | chr3.1:1382044-1382063 | MS.gene009313:intron | 50.0% |
| AGCCGGCCCAACAAATCTAG+GGG | + | chr3.1:1381436-1381455 | None:intergenic | 55.0% | |
| CCTCCAGTTCAGCTTGACAC+CGG | - | chr3.1:1382142-1382161 | MS.gene009313:CDS | 55.0% | |
| CGGCGACAGAGCTGAAATGA+GGG | + | chr3.1:1381497-1381516 | None:intergenic | 55.0% | |
| CTCTGTCGCCGCAGATACAA+CGG | - | chr3.1:1381506-1381525 | MS.gene009313:intron | 55.0% | |
| GAGCCGGCCCAACAAATCTA+GGG | + | chr3.1:1381437-1381456 | None:intergenic | 55.0% | |
| TTGAGCTCCGGCACACATGA+GGG | + | chr3.1:1381255-1381274 | None:intergenic | 55.0% | |
| !! | CTAGATTTGTTGGGCCGGCT+CGG | - | chr3.1:1381436-1381455 | MS.gene009313:intron | 55.0% |
| AGTCGGGTTCATCACCGAGC+CGG | + | chr3.1:1381453-1381472 | None:intergenic | 60.0% | |
| CGAGCCGGCCCAACAAATCT+AGG | + | chr3.1:1381438-1381457 | None:intergenic | 60.0% | |
| GCGGCGACAGAGCTGAAATG+AGG | + | chr3.1:1381498-1381517 | None:intergenic | 60.0% | |
| GTTGAGCTCCGGCACACATG+AGG | + | chr3.1:1381256-1381275 | None:intergenic | 60.0% | |
| ! | CCGGTGTCAAGCTGAACTGG+AGG | + | chr3.1:1382145-1382164 | None:intergenic | 60.0% |
| !! | GGCCCCTAGATTTGTTGGGC+CGG | - | chr3.1:1381431-1381450 | MS.gene009313:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 1380550 | 1382168 | 1380550 | ID=MS.gene009313 |
| chr3.1 | mRNA | 1380550 | 1382168 | 1380550 | ID=MS.gene009313.t1;Parent=MS.gene009313 |
| chr3.1 | exon | 1382132 | 1382168 | 1382132 | ID=MS.gene009313.t1.exon1;Parent=MS.gene009313.t1 |
| chr3.1 | CDS | 1382132 | 1382168 | 1382132 | ID=cds.MS.gene009313.t1;Parent=MS.gene009313.t1 |
| chr3.1 | exon | 1381191 | 1381278 | 1381191 | ID=MS.gene009313.t1.exon2;Parent=MS.gene009313.t1 |
| chr3.1 | CDS | 1381191 | 1381278 | 1381191 | ID=cds.MS.gene009313.t1;Parent=MS.gene009313.t1 |
| chr3.1 | exon | 1380762 | 1381089 | 1380762 | ID=MS.gene009313.t1.exon3;Parent=MS.gene009313.t1 |
| chr3.1 | CDS | 1380762 | 1381089 | 1380762 | ID=cds.MS.gene009313.t1;Parent=MS.gene009313.t1 |
| chr3.1 | exon | 1380550 | 1380699 | 1380550 | ID=MS.gene009313.t1.exon4;Parent=MS.gene009313.t1 |
| chr3.1 | CDS | 1380550 | 1380699 | 1380550 | ID=cds.MS.gene009313.t1;Parent=MS.gene009313.t1 |
| Gene Sequence |
| Protein sequence |
