Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009322.t1 | XP_013458769.1 | 93 | 215 | 9 | 1 | 46 | 260 | 21 | 229 | 2.80E-107 | 398.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009322.t1 | Q9SZL8 | 52.3 | 107 | 49 | 1 | 80 | 184 | 72 | 178 | 1.1e-24 | 115.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009322.t1 | A0A072UTY6 | 93.0 | 215 | 9 | 1 | 46 | 260 | 21 | 229 | 2.0e-107 | 398.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene009322.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009322.t1 | MTR_3g006370 | 91.743 | 218 | 12 | 1 | 43 | 260 | 18 | 229 | 1.17e-147 | 412 |
| MS.gene009322.t1 | MTR_4g067290 | 42.857 | 175 | 92 | 3 | 77 | 247 | 52 | 222 | 1.23e-37 | 132 |
| MS.gene009322.t1 | MTR_4g067290 | 42.857 | 175 | 92 | 3 | 77 | 247 | 72 | 242 | 2.35e-37 | 132 |
| MS.gene009322.t1 | MTR_4g067290 | 42.857 | 175 | 92 | 3 | 77 | 247 | 70 | 240 | 2.41e-37 | 132 |
| MS.gene009322.t1 | MTR_4g067290 | 42.373 | 177 | 92 | 3 | 77 | 247 | 52 | 224 | 2.51e-37 | 132 |
| MS.gene009322.t1 | MTR_4g067290 | 42.373 | 177 | 92 | 3 | 77 | 247 | 72 | 244 | 4.40e-37 | 131 |
| MS.gene009322.t1 | MTR_2g098920 | 40.217 | 184 | 101 | 3 | 77 | 255 | 76 | 255 | 5.01e-37 | 132 |
| MS.gene009322.t1 | MTR_4g067290 | 42.373 | 177 | 92 | 3 | 77 | 247 | 112 | 284 | 1.38e-36 | 131 |
| MS.gene009322.t1 | MTR_2g098880 | 36.788 | 193 | 102 | 5 | 75 | 251 | 55 | 243 | 1.46e-34 | 125 |
| MS.gene009322.t1 | MTR_2g098880 | 36.788 | 193 | 102 | 5 | 75 | 251 | 67 | 255 | 1.82e-34 | 125 |
| MS.gene009322.t1 | MTR_2g070590 | 36.792 | 106 | 65 | 2 | 81 | 185 | 17 | 121 | 1.05e-12 | 63.5 |
| MS.gene009322.t1 | MTR_0402s0040 | 36.538 | 104 | 64 | 2 | 81 | 183 | 26 | 128 | 8.81e-12 | 65.1 |
| MS.gene009322.t1 | MTR_5g015480 | 37.143 | 105 | 64 | 2 | 81 | 184 | 56 | 159 | 5.06e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009322.t1 | AT2G43280 | 72.678 | 183 | 49 | 1 | 75 | 257 | 17 | 198 | 7.77e-99 | 288 |
| MS.gene009322.t1 | AT2G43280 | 73.620 | 163 | 43 | 0 | 95 | 257 | 1 | 163 | 5.44e-91 | 266 |
| MS.gene009322.t1 | AT3G07500 | 47.872 | 188 | 91 | 3 | 71 | 252 | 23 | 209 | 8.40e-50 | 163 |
| MS.gene009322.t1 | AT4G12850 | 43.094 | 181 | 91 | 2 | 75 | 251 | 5 | 177 | 3.04e-45 | 150 |
| MS.gene009322.t1 | AT3G59470 | 46.629 | 178 | 84 | 4 | 80 | 251 | 69 | 241 | 2.34e-41 | 142 |
| MS.gene009322.t1 | AT3G59470 | 46.629 | 178 | 84 | 4 | 80 | 251 | 69 | 241 | 2.34e-41 | 142 |
| MS.gene009322.t1 | AT3G59470 | 46.629 | 178 | 84 | 4 | 80 | 251 | 81 | 253 | 3.53e-41 | 142 |
| MS.gene009322.t1 | AT4G12850 | 49.558 | 113 | 45 | 2 | 75 | 183 | 5 | 109 | 7.45e-30 | 109 |
| MS.gene009322.t1 | AT4G12850 | 50.459 | 109 | 50 | 1 | 75 | 183 | 5 | 109 | 8.55e-30 | 109 |
| MS.gene009322.t1 | AT4G38180 | 52.336 | 107 | 49 | 1 | 80 | 184 | 72 | 178 | 1.02e-23 | 100 |
| MS.gene009322.t1 | AT2G32250 | 34.351 | 131 | 80 | 2 | 77 | 207 | 34 | 158 | 3.07e-17 | 81.6 |
| MS.gene009322.t1 | AT2G32250 | 34.351 | 131 | 80 | 2 | 77 | 207 | 34 | 158 | 3.07e-17 | 81.6 |
| MS.gene009322.t1 | AT2G32250 | 34.351 | 131 | 80 | 2 | 77 | 207 | 34 | 158 | 3.07e-17 | 81.6 |
| MS.gene009322.t1 | AT2G32250 | 34.351 | 131 | 80 | 2 | 77 | 207 | 34 | 158 | 3.47e-17 | 81.3 |
| MS.gene009322.t1 | AT2G32250 | 34.351 | 131 | 80 | 2 | 77 | 207 | 34 | 158 | 3.47e-17 | 81.3 |
| MS.gene009322.t1 | AT2G32250 | 34.351 | 131 | 80 | 2 | 77 | 207 | 34 | 158 | 3.51e-17 | 81.3 |
| MS.gene009322.t1 | AT3G06250 | 38.739 | 111 | 54 | 1 | 80 | 190 | 189 | 285 | 5.41e-16 | 77.8 |
| MS.gene009322.t1 | AT3G06250 | 31.884 | 138 | 79 | 2 | 56 | 193 | 4 | 126 | 2.21e-15 | 75.9 |
| MS.gene009322.t1 | AT3G06250 | 38.739 | 111 | 54 | 1 | 80 | 190 | 189 | 285 | 5.41e-16 | 77.8 |
| MS.gene009322.t1 | AT3G06250 | 31.884 | 138 | 79 | 2 | 56 | 193 | 4 | 126 | 2.21e-15 | 75.9 |
| MS.gene009322.t1 | AT3G06250 | 38.739 | 111 | 54 | 1 | 80 | 190 | 189 | 285 | 5.41e-16 | 77.8 |
| MS.gene009322.t1 | AT3G06250 | 31.884 | 138 | 79 | 2 | 56 | 193 | 4 | 126 | 2.21e-15 | 75.9 |
| MS.gene009322.t1 | AT2G32250 | 34.146 | 123 | 75 | 2 | 85 | 207 | 1 | 117 | 6.06e-16 | 77.8 |
| MS.gene009322.t1 | AT2G32250 | 34.146 | 123 | 75 | 2 | 85 | 207 | 1 | 117 | 6.12e-16 | 77.8 |
| MS.gene009322.t1 | AT5G18960 | 39.423 | 104 | 49 | 1 | 80 | 183 | 210 | 299 | 1.36e-15 | 76.6 |
| MS.gene009322.t1 | AT5G18960 | 33.600 | 125 | 62 | 2 | 80 | 197 | 42 | 152 | 3.53e-15 | 75.5 |
| MS.gene009322.t1 | AT5G18960 | 39.423 | 104 | 49 | 1 | 80 | 183 | 210 | 299 | 1.36e-15 | 76.6 |
| MS.gene009322.t1 | AT5G18960 | 33.600 | 125 | 62 | 2 | 80 | 197 | 42 | 152 | 3.53e-15 | 75.5 |
| MS.gene009322.t1 | AT4G15090 | 33.582 | 134 | 78 | 3 | 58 | 184 | 24 | 153 | 3.26e-15 | 75.5 |
| MS.gene009322.t1 | AT4G15090 | 33.582 | 134 | 78 | 3 | 58 | 184 | 24 | 153 | 3.26e-15 | 75.5 |
| MS.gene009322.t1 | AT4G15090 | 33.582 | 134 | 78 | 3 | 58 | 184 | 24 | 153 | 3.26e-15 | 75.5 |
| MS.gene009322.t1 | AT4G15090 | 33.582 | 134 | 78 | 3 | 58 | 184 | 24 | 153 | 3.26e-15 | 75.5 |
| MS.gene009322.t1 | AT4G15090 | 33.582 | 134 | 78 | 3 | 58 | 184 | 24 | 153 | 3.26e-15 | 75.5 |
| MS.gene009322.t1 | AT1G76320 | 33.099 | 142 | 88 | 4 | 85 | 225 | 1 | 136 | 6.69e-14 | 71.6 |
| MS.gene009322.t1 | AT1G76320 | 33.099 | 142 | 88 | 4 | 85 | 225 | 1 | 136 | 6.70e-14 | 71.6 |
| MS.gene009322.t1 | AT1G76320 | 33.099 | 142 | 88 | 4 | 85 | 225 | 1 | 136 | 6.70e-14 | 71.6 |
| MS.gene009322.t1 | AT1G76320 | 33.099 | 142 | 88 | 4 | 85 | 225 | 1 | 136 | 7.70e-14 | 71.2 |
| MS.gene009322.t1 | AT2G27110 | 33.333 | 141 | 69 | 5 | 46 | 186 | 23 | 138 | 1.25e-13 | 70.9 |
| MS.gene009322.t1 | AT2G27110 | 33.333 | 141 | 69 | 5 | 46 | 186 | 23 | 138 | 1.25e-13 | 70.9 |
| MS.gene009322.t1 | AT4G19990 | 30.405 | 148 | 90 | 3 | 70 | 205 | 10 | 156 | 1.49e-13 | 70.5 |
| MS.gene009322.t1 | AT4G19990 | 30.405 | 148 | 90 | 3 | 70 | 205 | 10 | 156 | 1.49e-13 | 70.5 |
| MS.gene009322.t1 | AT4G19990 | 32.331 | 133 | 78 | 2 | 70 | 190 | 24 | 156 | 1.53e-13 | 70.5 |
| MS.gene009322.t1 | AT4G19990 | 30.405 | 148 | 90 | 3 | 70 | 205 | 10 | 156 | 1.58e-13 | 70.5 |
| MS.gene009322.t1 | AT4G19990 | 32.331 | 133 | 78 | 2 | 70 | 190 | 10 | 142 | 1.59e-13 | 70.5 |
| MS.gene009322.t1 | AT4G19990 | 32.331 | 133 | 78 | 2 | 70 | 190 | 10 | 142 | 1.59e-13 | 70.5 |
| MS.gene009322.t1 | AT3G22170 | 33.333 | 126 | 72 | 2 | 80 | 193 | 69 | 194 | 3.01e-13 | 69.7 |
| MS.gene009322.t1 | AT3G22170 | 33.333 | 126 | 72 | 2 | 80 | 193 | 69 | 194 | 3.01e-13 | 69.7 |
Find 57 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATGGTTTCAAAATGGTTT+TGG | 0.241504 | 3.1:+1539657 | MS.gene009322:intron |
| AGATCGGAAAAGAGTTATTC+TGG | 0.296771 | 3.1:+1542051 | MS.gene009322:CDS |
| AGTATGATCAGTCCGGAAAA+TGG | 0.304694 | 3.1:+1542382 | MS.gene009322:CDS |
| CTCGTTTGTTTCTCTGAAAT+CGG | 0.313297 | 3.1:+1539340 | MS.gene009322:CDS |
| AGTAACAGATGGTTTCAAAA+TGG | 0.326249 | 3.1:+1539651 | MS.gene009322:intron |
| TACAATTGTATTTGAAATCA+TGG | 0.332977 | 3.1:+1539696 | MS.gene009322:CDS |
| AGGATTCTCGCCCGCAGGTT+TGG | 0.350053 | 3.1:+1542255 | MS.gene009322:CDS |
| CCGCAGGTTTGGATGTAATA+AGG | 0.351849 | 3.1:+1542266 | MS.gene009322:CDS |
| ATTATGGATTTACCATTGTT+TGG | 0.357489 | 3.1:-1542467 | None:intergenic |
| TGAGAAGGATAAGAAAATTC+AGG | 0.371151 | 3.1:+1542874 | MS.gene009322:CDS |
| AGTTATTCTGGGAGAGAGTT+GGG | 0.374971 | 3.1:+1542063 | MS.gene009322:CDS |
| TGATCATGACCATGCTGTTA+AGG | 0.378319 | 3.1:+1542110 | MS.gene009322:CDS |
| TGAGAGTGTTTAGTTTGAAT+GGG | 0.401963 | 3.1:-1539311 | None:intergenic |
| ACAAATTCCATGCCTTCATA+TGG | 0.406605 | 3.1:-1542135 | None:intergenic |
| CTGGCCCTTGGTTTACGAAC+TGG | 0.417375 | 3.1:-1542324 | None:intergenic |
| GTGAGAGTGTTTAGTTTGAA+TGG | 0.418117 | 3.1:-1539312 | None:intergenic |
| TCCGATCTACACCCATCATT+CGG | 0.425751 | 3.1:-1542036 | None:intergenic |
| CTGGTGCAAAAGCTCTTCTA+TGG | 0.431453 | 3.1:-1543044 | None:intergenic |
| CCTTCCCTAGTGCTGGCCCT+TGG | 0.440050 | 3.1:-1542336 | None:intergenic |
| AAATATCTTAGCAGCATCTT+CGG | 0.446381 | 3.1:-1542160 | None:intergenic |
| GAGTTATTCTGGGAGAGAGT+TGG | 0.452971 | 3.1:+1542062 | MS.gene009322:CDS |
| CAGCACTAGGGAAGGTTGTA+AGG | 0.453970 | 3.1:+1542344 | MS.gene009322:CDS |
| GGTCATTGTGTCAGCATACA+AGG | 0.462427 | 3.1:+1542291 | MS.gene009322:CDS |
| GTATGATCAGTCCGGAAAAT+GGG | 0.472464 | 3.1:+1542383 | MS.gene009322:CDS |
| AGGAACTAACAGTAGAGCTT+CGG | 0.480103 | 3.1:+1542894 | MS.gene009322:CDS |
| GTCAGCATACAAGGGAAACT+TGG | 0.481454 | 3.1:+1542300 | MS.gene009322:CDS |
| CATTACAAATTCTACATGTC+GGG | 0.483452 | 3.1:-1542196 | None:intergenic |
| TAATGCGTGTGATGTCTTGT+CGG | 0.484944 | 3.1:+1542214 | MS.gene009322:CDS |
| GTAAACCAAGGGCCAGCACT+AGG | 0.487984 | 3.1:+1542331 | MS.gene009322:CDS |
| GAGAGTGTTTAGTTTGAATG+GGG | 0.495082 | 3.1:-1539310 | None:intergenic |
| ACATAATGCAGGGCTACGTC+TGG | 0.504943 | 3.1:-1543063 | None:intergenic |
| TGTGATGTCTTGTCGGCGCT+CGG | 0.527714 | 3.1:+1542221 | MS.gene009322:CDS |
| ATGGTAGGATTCTCGCCCGC+AGG | 0.530043 | 3.1:+1542250 | MS.gene009322:CDS |
| CATATCAAGTATGATCAGTC+CGG | 0.531806 | 3.1:+1542375 | MS.gene009322:CDS |
| GCATTACAAATTCTACATGT+CGG | 0.534842 | 3.1:-1542197 | None:intergenic |
| CTTACAACCTTCCCTAGTGC+TGG | 0.535860 | 3.1:-1542343 | None:intergenic |
| GATCGGAAAAGAGTTATTCT+GGG | 0.541626 | 3.1:+1542052 | MS.gene009322:CDS |
| TAAACCAAGGGCCAGCACTA+GGG | 0.547162 | 3.1:+1542332 | MS.gene009322:CDS |
| ACCGAATGATGGGTGTAGAT+CGG | 0.551733 | 3.1:+1542035 | MS.gene009322:CDS |
| GTGACAGTGGAACCGAATGA+TGG | 0.566161 | 3.1:+1542024 | MS.gene009322:intron |
| CTTATTACATCCAAACCTGC+GGG | 0.573213 | 3.1:-1542265 | None:intergenic |
| ATTGTTTGGCGTGCTTCACG+TGG | 0.576935 | 3.1:-1542453 | None:intergenic |
| GCTGTTAAGGAACCATATGA+AGG | 0.588056 | 3.1:+1542123 | MS.gene009322:CDS |
| TAAGGAACCATATGAAGGCA+TGG | 0.594188 | 3.1:+1542128 | MS.gene009322:CDS |
| CCAAGGGCCAGCACTAGGGA+AGG | 0.608378 | 3.1:+1542336 | MS.gene009322:CDS |
| CATATGGTTCCTTAACAGCA+TGG | 0.608918 | 3.1:-1542119 | None:intergenic |
| TGTCGGCGCTCGGAAAGAGA+TGG | 0.610372 | 3.1:+1542231 | MS.gene009322:CDS |
| TGACAGTGGAACCGAATGAT+GGG | 0.614797 | 3.1:+1542025 | MS.gene009322:intron |
| CATGGTCATGATCAGAGATA+CGG | 0.615572 | 3.1:-1542101 | None:intergenic |
| ACGTGAAGCACGCCAAACAA+TGG | 0.620174 | 3.1:+1542455 | MS.gene009322:CDS |
| TTGGTCCAGTTCGTAAACCA+AGG | 0.623231 | 3.1:+1542319 | MS.gene009322:CDS |
| CAGGTTTGGATGTAATAAGG+AGG | 0.625678 | 3.1:+1542269 | MS.gene009322:CDS |
| CCTTATTACATCCAAACCTG+CGG | 0.631158 | 3.1:-1542266 | None:intergenic |
| AGGTTTGGATGTAATAAGGA+GGG | 0.648013 | 3.1:+1542270 | MS.gene009322:CDS |
| TGGTCCAGTTCGTAAACCAA+GGG | 0.657286 | 3.1:+1542320 | MS.gene009322:CDS |
| GTCATTGTGTCAGCATACAA+GGG | 0.663280 | 3.1:+1542292 | MS.gene009322:CDS |
| GGCGCTCGGAAAGAGATGGT+AGG | 0.693531 | 3.1:+1542235 | MS.gene009322:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTATCAATTAAAAAATA+TGG | - | chr3.1:1542558-1542577 | None:intergenic | 10.0% |
| !! | AAAATGAATTAGTATTATGA+GGG | + | chr3.1:1541563-1541582 | MS.gene009322:intron | 15.0% |
| !! | AATGAAATGAAAATTATGAA+GGG | + | chr3.1:1541600-1541619 | MS.gene009322:intron | 15.0% |
| !! | AGAAATGATAGAATTAAAAA+TGG | + | chr3.1:1540377-1540396 | MS.gene009322:intron | 15.0% |
| !! | ATAAAAAATTCATTCTATTC+AGG | - | chr3.1:1541635-1541654 | None:intergenic | 15.0% |
| !! | ATTAATGTTGAATATATATG+AGG | - | chr3.1:1539381-1539400 | None:intergenic | 15.0% |
| !! | ATTATATTATATAACATCTC+TGG | + | chr3.1:1542781-1542800 | MS.gene009322:intron | 15.0% |
| !! | TAATGAAATGAAAATTATGA+AGG | + | chr3.1:1541599-1541618 | MS.gene009322:intron | 15.0% |
| !!! | AAATAAAAATCTTTTACTTG+TGG | + | chr3.1:1540872-1540891 | MS.gene009322:intron | 15.0% |
| !!! | CATAATTTTCATTTCATTAA+GGG | - | chr3.1:1541598-1541617 | None:intergenic | 15.0% |
| !!! | TCATAATTTTCATTTCATTA+AGG | - | chr3.1:1541599-1541618 | None:intergenic | 15.0% |
| !!! | TCTTCATTTCTATATTTTTT+TGG | + | chr3.1:1542636-1542655 | MS.gene009322:intron | 15.0% |
| !!! | TGATTTTCTCAAATTATTAT+CGG | - | chr3.1:1539885-1539904 | None:intergenic | 15.0% |
| !! | AATATCTTCATATATGAGTA+TGG | + | chr3.1:1540775-1540794 | MS.gene009322:intron | 20.0% |
| !! | ATGAAATGAAAATTATGAAG+GGG | + | chr3.1:1541601-1541620 | MS.gene009322:intron | 20.0% |
| !! | CAAAATGAATTAGTATTATG+AGG | + | chr3.1:1541562-1541581 | MS.gene009322:intron | 20.0% |
| !! | TATTAAAGAGAGTTTGAATA+GGG | + | chr3.1:1540403-1540422 | MS.gene009322:intron | 20.0% |
| !!! | ATCCATAATTCTTATTTAAC+CGG | + | chr3.1:1542481-1542500 | MS.gene009322:intron | 20.0% |
| !!! | CATTTTGGAATATAAATGAT+AGG | - | chr3.1:1541549-1541568 | None:intergenic | 20.0% |
| !!! | CTCATAATACTAATTCATTT+TGG | - | chr3.1:1541564-1541583 | None:intergenic | 20.0% |
| !!! | GAAGCTAATATTATTGTTTT+TGG | + | chr3.1:1542692-1542711 | MS.gene009322:intron | 20.0% |
| !!! | TACAATTGTATTTGAAATCA+TGG | + | chr3.1:1539696-1539715 | MS.gene009322:CDS | 20.0% |
| !!! | TGATTGCTTTAAATGAAAAA+TGG | - | chr3.1:1541925-1541944 | None:intergenic | 20.0% |
| ! | AAACATTTCAACTTGGAATT+TGG | + | chr3.1:1541488-1541507 | MS.gene009322:intron | 25.0% |
| ! | AACATTTCAACTTGGAATTT+GGG | + | chr3.1:1541489-1541508 | MS.gene009322:intron | 25.0% |
| ! | AACCGGTTAAATAAGAATTA+TGG | - | chr3.1:1542486-1542505 | None:intergenic | 25.0% |
| ! | AAGAAACCTATAGTTATTAG+AGG | - | chr3.1:1541845-1541864 | None:intergenic | 25.0% |
| ! | AAGATAAATTATTGTGACAG+TGG | + | chr3.1:1542011-1542030 | MS.gene009322:intron | 25.0% |
| ! | ATGCAAAAATAAGTTATGCA+TGG | - | chr3.1:1541970-1541989 | None:intergenic | 25.0% |
| ! | ATTATGGATTTACCATTGTT+TGG | - | chr3.1:1542470-1542489 | None:intergenic | 25.0% |
| ! | ATTATTACATGTAGCAGAAA+AGG | - | chr3.1:1539764-1539783 | None:intergenic | 25.0% |
| ! | GAAACCATATTTACAATCAT+TGG | - | chr3.1:1540210-1540229 | None:intergenic | 25.0% |
| ! | GTATTAAAGAGAGTTTGAAT+AGG | + | chr3.1:1540402-1540421 | MS.gene009322:intron | 25.0% |
| ! | TGACAAATACACTATGAAAA+TGG | - | chr3.1:1540736-1540755 | None:intergenic | 25.0% |
| ! | TTATTACATGTAGCAGAAAA+GGG | - | chr3.1:1539763-1539782 | None:intergenic | 25.0% |
| ! | TTTATTCGATAGTTGAATGA+AGG | + | chr3.1:1541650-1541669 | MS.gene009322:intron | 25.0% |
| !! | AAAAGAATGCACTTTTATGT+AGG | - | chr3.1:1540821-1540840 | None:intergenic | 25.0% |
| !! | AAAGAATGCACTTTTATGTA+GGG | - | chr3.1:1540820-1540839 | None:intergenic | 25.0% |
| !! | AAATTCCAAGTTGAAATGTT+TGG | - | chr3.1:1541489-1541508 | None:intergenic | 25.0% |
| !! | ACAAATTTTGAGCTAAAATG+TGG | - | chr3.1:1541224-1541243 | None:intergenic | 25.0% |
| !! | CAAATTTTGAGCTAAAATGT+GGG | - | chr3.1:1541223-1541242 | None:intergenic | 25.0% |
| !! | CTTTTATTGAAAGCAAAGTT+AGG | + | chr3.1:1540836-1540855 | MS.gene009322:intron | 25.0% |
| !! | TCTGTTGGAAATACTATTTT+TGG | - | chr3.1:1541449-1541468 | None:intergenic | 25.0% |
| AAATATCTTAGCAGCATCTT+CGG | - | chr3.1:1542163-1542182 | None:intergenic | 30.0% | |
| AATTCAAACAGACCCTTATT+TGG | - | chr3.1:1540264-1540283 | None:intergenic | 30.0% | |
| AGTAACAGATGGTTTCAAAA+TGG | + | chr3.1:1539651-1539670 | MS.gene009322:intron | 30.0% | |
| ATAAGTTGTTTAAGCTCTCT+AGG | + | chr3.1:1540567-1540586 | MS.gene009322:intron | 30.0% | |
| CATTACAAATTCTACATGTC+GGG | - | chr3.1:1542199-1542218 | None:intergenic | 30.0% | |
| CTGAGAAAGTAACCAAATAA+GGG | + | chr3.1:1540249-1540268 | MS.gene009322:intron | 30.0% | |
| GATGGTAAACTTCGTTTATT+TGG | + | chr3.1:1539459-1539478 | MS.gene009322:intron | 30.0% | |
| GCATTACAAATTCTACATGT+CGG | - | chr3.1:1542200-1542219 | None:intergenic | 30.0% | |
| GTAAACTTCGTTTATTTGGT+GGG | + | chr3.1:1539463-1539482 | MS.gene009322:intron | 30.0% | |
| TAGAGAGCTTAAACAACTTA+TGG | - | chr3.1:1540568-1540587 | None:intergenic | 30.0% | |
| TAGAGCTTCGGATTAAAAAA+CGG | + | chr3.1:1542906-1542925 | MS.gene009322:CDS | 30.0% | |
| TCTGAGAAAGTAACCAAATA+AGG | + | chr3.1:1540248-1540267 | MS.gene009322:intron | 30.0% | |
| TCTGCCAATGATTGTAAATA+TGG | + | chr3.1:1540203-1540222 | MS.gene009322:intron | 30.0% | |
| TGAAAATTATGAAGGGGATT+AGG | + | chr3.1:1541607-1541626 | MS.gene009322:intron | 30.0% | |
| TGAAAGGATGTTTACTAAGA+GGG | - | chr3.1:1541719-1541738 | None:intergenic | 30.0% | |
| TGAGAAGGATAAGAAAATTC+AGG | + | chr3.1:1542874-1542893 | MS.gene009322:CDS | 30.0% | |
| TGTGTAATTGTTTAAACCCT+TGG | + | chr3.1:1539511-1539530 | MS.gene009322:intron | 30.0% | |
| TTACAATCATTGGCAGAAAA+GGG | - | chr3.1:1540200-1540219 | None:intergenic | 30.0% | |
| TTAGAGCCTCTAATAACTAT+AGG | + | chr3.1:1541836-1541855 | MS.gene009322:intron | 30.0% | |
| TTAGTATTATGAGGGTGATT+AGG | + | chr3.1:1541571-1541590 | MS.gene009322:intron | 30.0% | |
| TTGAAAGGATGTTTACTAAG+AGG | - | chr3.1:1541720-1541739 | None:intergenic | 30.0% | |
| TTTACAATCATTGGCAGAAA+AGG | - | chr3.1:1540201-1540220 | None:intergenic | 30.0% | |
| TTTGAGAAAATGACATGTGT+TGG | + | chr3.1:1540094-1540113 | MS.gene009322:intron | 30.0% | |
| ! | AAAATCTTTTACTTGTGGAC+AGG | + | chr3.1:1540877-1540896 | MS.gene009322:intron | 30.0% |
| ! | AGATGGTTTCAAAATGGTTT+TGG | + | chr3.1:1539657-1539676 | MS.gene009322:intron | 30.0% |
| ! | ATAGTTATTAGAGGCTCTAA+AGG | - | chr3.1:1541836-1541855 | None:intergenic | 30.0% |
| ! | ATATTAGCTTCTTCTTACCA+AGG | - | chr3.1:1542683-1542702 | None:intergenic | 30.0% |
| ! | ATGGAATCTAGATTAGTTGA+TGG | + | chr3.1:1540962-1540981 | MS.gene009322:intron | 30.0% |
| ! | GTTTTCCAAAGATTGAAAAC+CGG | - | chr3.1:1542503-1542522 | None:intergenic | 30.0% |
| ! | TTGGTTACTTTCTCAGAAAA+GGG | - | chr3.1:1540245-1540264 | None:intergenic | 30.0% |
| ! | TTGGTTCTTGTACTAGATTA+AGG | + | chr3.1:1540494-1540513 | MS.gene009322:intron | 30.0% |
| ! | TTTGGTTACTTTCTCAGAAA+AGG | - | chr3.1:1540246-1540265 | None:intergenic | 30.0% |
| !! | AGAGAATTTGTTATTCACCA+GGG | - | chr3.1:1541410-1541429 | None:intergenic | 30.0% |
| !! | TAGAGAATTTGTTATTCACC+AGG | - | chr3.1:1541411-1541430 | None:intergenic | 30.0% |
| !! | TAGTTATTAGAGGCTCTAAA+GGG | - | chr3.1:1541835-1541854 | None:intergenic | 30.0% |
| !! | TGAGAGTGTTTAGTTTGAAT+GGG | - | chr3.1:1539314-1539333 | None:intergenic | 30.0% |
| !! | TTCTTGTATGAGGTATTGAA+AGG | - | chr3.1:1541735-1541754 | None:intergenic | 30.0% |
| !! | TTTAACCGGTTTTCAATCTT+TGG | + | chr3.1:1542495-1542514 | MS.gene009322:intron | 30.0% |
| !!! | GTTTTTGTTTTAGGATGAGA+AGG | + | chr3.1:1542859-1542878 | MS.gene009322:intron | 30.0% |
| !!! | TTCTGCGTTGTTTTTGTTTT+AGG | + | chr3.1:1542850-1542869 | MS.gene009322:intron | 30.0% |
| ACAAATTCCATGCCTTCATA+TGG | - | chr3.1:1542138-1542157 | None:intergenic | 35.0% | |
| ACATAGCTACAACACATTGT+AGG | - | chr3.1:1541386-1541405 | None:intergenic | 35.0% | |
| AGATCGGAAAAGAGTTATTC+TGG | + | chr3.1:1542051-1542070 | MS.gene009322:CDS | 35.0% | |
| AGGTTTGGATGTAATAAGGA+GGG | + | chr3.1:1542270-1542289 | MS.gene009322:CDS | 35.0% | |
| AGTGCTACATAGGTTCTTAA+TGG | - | chr3.1:1539826-1539845 | None:intergenic | 35.0% | |
| CAAGACCAAACATTTCAACT+TGG | + | chr3.1:1541481-1541500 | MS.gene009322:intron | 35.0% | |
| CATATCAAGTATGATCAGTC+CGG | + | chr3.1:1542375-1542394 | MS.gene009322:CDS | 35.0% | |
| CCATGTTGCATAACAAAGTA+TGG | - | chr3.1:1540946-1540965 | None:intergenic | 35.0% | |
| CGAGAGTAAATTAAGCATAG+TGG | + | chr3.1:1540319-1540338 | MS.gene009322:intron | 35.0% | |
| CGATAGTTGAATGAAGGAAA+AGG | + | chr3.1:1541656-1541675 | MS.gene009322:intron | 35.0% | |
| CTATGCTTAATTTACTCTCG+TGG | - | chr3.1:1540319-1540338 | None:intergenic | 35.0% | |
| CTCAGTATAGTAGTAACAGA+TGG | + | chr3.1:1539640-1539659 | MS.gene009322:intron | 35.0% | |
| GATCGGAAAAGAGTTATTCT+GGG | + | chr3.1:1542052-1542071 | MS.gene009322:CDS | 35.0% | |
| GGTAAACTTCGTTTATTTGG+TGG | + | chr3.1:1539462-1539481 | MS.gene009322:intron | 35.0% | |
| GTAGCTTAAGCAAATTACTG+AGG | - | chr3.1:1541185-1541204 | None:intergenic | 35.0% | |
| GTTGTCTAGTTGTGTATATG+TGG | + | chr3.1:1541337-1541356 | MS.gene009322:intron | 35.0% | |
| TAAAACGTTATATTGTGCCC+AGG | + | chr3.1:1542572-1542591 | MS.gene009322:intron | 35.0% | |
| TACAAGAACCACGACAAAAA+CGG | + | chr3.1:1541747-1541766 | MS.gene009322:intron | 35.0% | |
| TCACAAAGAGGAGTTAAAAC+AGG | - | chr3.1:1542735-1542754 | None:intergenic | 35.0% | |
| TCTTCTTCTGCTGGTAAATA+TGG | + | chr3.1:1539722-1539741 | MS.gene009322:intron | 35.0% | |
| TGTTTGTATCAGTGCTACAT+AGG | - | chr3.1:1539836-1539855 | None:intergenic | 35.0% | |
| ! | AAGTGATGATTTTCTGCTAC+TGG | + | chr3.1:1540147-1540166 | MS.gene009322:intron | 35.0% |
| ! | CCATACTTTGTTATGCAACA+TGG | + | chr3.1:1540943-1540962 | MS.gene009322:intron | 35.0% |
| !! | AGATTAGTTGATGGAAGTGA+CGG | + | chr3.1:1540971-1540990 | MS.gene009322:intron | 35.0% |
| !! | ATGTAGCACTGATACAAACA+CGG | + | chr3.1:1539836-1539855 | MS.gene009322:intron | 35.0% |
| !! | CTCGTTTGTTTCTCTGAAAT+CGG | + | chr3.1:1539340-1539359 | MS.gene009322:CDS | 35.0% |
| !! | CTTTGTTATCACCCATTTTC+CGG | - | chr3.1:1542397-1542416 | None:intergenic | 35.0% |
| !! | GAGAGTGTTTAGTTTGAATG+GGG | - | chr3.1:1539313-1539332 | None:intergenic | 35.0% |
| !! | GTGAGAGTGTTTAGTTTGAA+TGG | - | chr3.1:1539315-1539334 | None:intergenic | 35.0% |
| !!! | TGTTTTAACTCCTCTTTGTG+AGG | + | chr3.1:1542734-1542753 | MS.gene009322:intron | 35.0% |
| AGGAACTAACAGTAGAGCTT+CGG | + | chr3.1:1542894-1542913 | MS.gene009322:CDS | 40.0% | |
| AGGCATGTATGGAAGAAAGA+AGG | + | chr3.1:1542592-1542611 | MS.gene009322:intron | 40.0% | |
| AGTATGATCAGTCCGGAAAA+TGG | + | chr3.1:1542382-1542401 | MS.gene009322:CDS | 40.0% | |
| ATTGTTTAAACCCTTGGCCT+TGG | + | chr3.1:1539517-1539536 | MS.gene009322:intron | 40.0% | |
| CAGGTTTGGATGTAATAAGG+AGG | + | chr3.1:1542269-1542288 | MS.gene009322:CDS | 40.0% | |
| CATATGGTTCCTTAACAGCA+TGG | - | chr3.1:1542122-1542141 | None:intergenic | 40.0% | |
| CATGGTCATGATCAGAGATA+CGG | - | chr3.1:1542104-1542123 | None:intergenic | 40.0% | |
| CCAAATCTTTCCTCACAAAG+AGG | - | chr3.1:1542747-1542766 | None:intergenic | 40.0% | |
| CCTCTTTGTGAGGAAAGATT+TGG | + | chr3.1:1542744-1542763 | MS.gene009322:intron | 40.0% | |
| CCTTATTACATCCAAACCTG+CGG | - | chr3.1:1542269-1542288 | None:intergenic | 40.0% | |
| CTTATTACATCCAAACCTGC+GGG | - | chr3.1:1542268-1542287 | None:intergenic | 40.0% | |
| GCTGTTAAGGAACCATATGA+AGG | + | chr3.1:1542123-1542142 | MS.gene009322:CDS | 40.0% | |
| GTATGATCAGTCCGGAAAAT+GGG | + | chr3.1:1542383-1542402 | MS.gene009322:CDS | 40.0% | |
| GTCATTGTGTCAGCATACAA+GGG | + | chr3.1:1542292-1542311 | MS.gene009322:CDS | 40.0% | |
| TAAAACGTTGTATCGTGCCT+TGG | + | chr3.1:1542663-1542682 | MS.gene009322:intron | 40.0% | |
| TAAGGAACCATATGAAGGCA+TGG | + | chr3.1:1542128-1542147 | MS.gene009322:CDS | 40.0% | |
| TAATGCGTGTGATGTCTTGT+CGG | + | chr3.1:1542214-1542233 | MS.gene009322:CDS | 40.0% | |
| TCTGCTACTGGTAGTAAAGT+AGG | + | chr3.1:1540159-1540178 | MS.gene009322:intron | 40.0% | |
| TCTGCTGGTAAATATGGCTT+GGG | + | chr3.1:1539728-1539747 | MS.gene009322:intron | 40.0% | |
| TCTTTCTTCCATACATGCCT+GGG | - | chr3.1:1542592-1542611 | None:intergenic | 40.0% | |
| TGAGCTATGAAGCTTAGACA+TGG | + | chr3.1:1540008-1540027 | MS.gene009322:intron | 40.0% | |
| TGATCATGACCATGCTGTTA+AGG | + | chr3.1:1542110-1542129 | MS.gene009322:CDS | 40.0% | |
| TGCTAAACACAGTGGAAAGT+CGG | + | chr3.1:1541273-1541292 | MS.gene009322:intron | 40.0% | |
| TTAAGCGATGCTAAACACAG+TGG | + | chr3.1:1541265-1541284 | MS.gene009322:intron | 40.0% | |
| TTCTGCTGGTAAATATGGCT+TGG | + | chr3.1:1539727-1539746 | MS.gene009322:intron | 40.0% | |
| TTCTTTCTTCCATACATGCC+TGG | - | chr3.1:1542593-1542612 | None:intergenic | 40.0% | |
| TTGATGTTGTGTTCGATGTG+TGG | + | chr3.1:1540347-1540366 | MS.gene009322:intron | 40.0% | |
| TTTGTCGTGGTTCTTGTATG+AGG | - | chr3.1:1541745-1541764 | None:intergenic | 40.0% | |
| ! | AGTTATTCTGGGAGAGAGTT+GGG | + | chr3.1:1542063-1542082 | MS.gene009322:CDS | 40.0% |
| ! | AGTTTCTGGGGATGGTAATT+TGG | + | chr3.1:1541000-1541019 | MS.gene009322:intron | 40.0% |
| ! | GTTTCTGGGGATGGTAATTT+GGG | + | chr3.1:1541001-1541020 | MS.gene009322:intron | 40.0% |
| ! | TCATGGTTTTCTTCTTCTGC+TGG | + | chr3.1:1539713-1539732 | MS.gene009322:CDS | 40.0% |
| ! | TGGTTCGGGTTATTGTTTGA+TGG | + | chr3.1:1539546-1539565 | MS.gene009322:intron | 40.0% |
| ! | TTGTTTAAACCCTTGGCCTT+GGG | + | chr3.1:1539518-1539537 | MS.gene009322:intron | 40.0% |
| !! | ATTAGTTGATGGAAGTGACG+GGG | + | chr3.1:1540973-1540992 | MS.gene009322:intron | 40.0% |
| !! | GATTAGTTGATGGAAGTGAC+GGG | + | chr3.1:1540972-1540991 | MS.gene009322:intron | 40.0% |
| !! | GTTTCTTACCGTTTTTGTCG+TGG | - | chr3.1:1541758-1541777 | None:intergenic | 40.0% |
| !!! | CAAGGCTACATCTTTTTTGC+TGG | + | chr3.1:1540910-1540929 | MS.gene009322:intron | 40.0% |
| !!! | TGGACAGGATTTTTTCAGCA+AGG | + | chr3.1:1540892-1540911 | MS.gene009322:intron | 40.0% |
| AATGAAGGAAAAGGCGATGC+AGG | + | chr3.1:1541665-1541684 | MS.gene009322:intron | 45.0% | |
| ATATTGTGCCCAGGCATGTA+TGG | + | chr3.1:1542581-1542600 | MS.gene009322:intron | 45.0% | |
| ATGTAGCCAACACCACTTAG+TGG | + | chr3.1:1540463-1540482 | MS.gene009322:intron | 45.0% | |
| CAACACCACTTAGTGGGATA+AGG | + | chr3.1:1540470-1540489 | MS.gene009322:intron | 45.0% | |
| CCGCAGGTTTGGATGTAATA+AGG | + | chr3.1:1542266-1542285 | MS.gene009322:CDS | 45.0% | |
| CTGGTGCAAAAGCTCTTCTA+TGG | - | chr3.1:1543047-1543066 | None:intergenic | 45.0% | |
| CTGTCTCAAAGAGACATCAC+CGG | + | chr3.1:1541785-1541804 | MS.gene009322:intron | 45.0% | |
| CTTATCCCACTAAGTGGTGT+TGG | - | chr3.1:1540472-1540491 | None:intergenic | 45.0% | |
| GAATTCCTGCATCCTGTTCA+TGG | + | chr3.1:1541110-1541129 | MS.gene009322:intron | 45.0% | |
| GGGACACTGAGAAAGATGAA+TGG | + | chr3.1:1541509-1541528 | MS.gene009322:intron | 45.0% | |
| GGTCATTGTGTCAGCATACA+AGG | + | chr3.1:1542291-1542310 | MS.gene009322:CDS | 45.0% | |
| GTCAGCATACAAGGGAAACT+TGG | + | chr3.1:1542300-1542319 | MS.gene009322:CDS | 45.0% | |
| TCCGATCTACACCCATCATT+CGG | - | chr3.1:1542039-1542058 | None:intergenic | 45.0% | |
| TGACAGTGGAACCGAATGAT+GGG | + | chr3.1:1542025-1542044 | MS.gene009322:intron | 45.0% | |
| TGGTCCAGTTCGTAAACCAA+GGG | + | chr3.1:1542320-1542339 | MS.gene009322:CDS | 45.0% | |
| TGTAGCCAACACCACTTAGT+GGG | + | chr3.1:1540464-1540483 | MS.gene009322:intron | 45.0% | |
| TGTGTTGTAGCTATGTACCC+TGG | + | chr3.1:1541390-1541409 | MS.gene009322:intron | 45.0% | |
| TTGAGTCTTGCATGCTCTGT+TGG | - | chr3.1:1541464-1541483 | None:intergenic | 45.0% | |
| TTGGTCCAGTTCGTAAACCA+AGG | + | chr3.1:1542319-1542338 | MS.gene009322:CDS | 45.0% | |
| ! | GAGTTATTCTGGGAGAGAGT+TGG | + | chr3.1:1542062-1542081 | MS.gene009322:CDS | 45.0% |
| ! | TCTAAAGGGTTTTTCTCCCC+AGG | - | chr3.1:1541821-1541840 | None:intergenic | 45.0% |
| ! | TGGGAAAGAGCTTCTGGTTA+AGG | + | chr3.1:1541688-1541707 | MS.gene009322:intron | 45.0% |
| !! | ACCGAATGATGGGTGTAGAT+CGG | + | chr3.1:1542035-1542054 | MS.gene009322:CDS | 45.0% |
| !! | ACTAAGTGGTGTTGGCTACA+TGG | - | chr3.1:1540464-1540483 | None:intergenic | 45.0% |
| !! | GTCTCTTTGAGACAGACTAC+TGG | - | chr3.1:1541780-1541799 | None:intergenic | 45.0% |
| !!! | TTTTTTAATATATATTTTGA+TGG | + | chr3.1:1539441-1539460 | MS.gene009322:intron | 5.0% |
| AAGGAAAAGGCGATGCAGGT+GGG | + | chr3.1:1541669-1541688 | MS.gene009322:intron | 50.0% | |
| ACCAGACCTAAGCCATGAAC+AGG | - | chr3.1:1541125-1541144 | None:intergenic | 50.0% | |
| ACGTGAAGCACGCCAAACAA+TGG | + | chr3.1:1542455-1542474 | MS.gene009322:CDS | 50.0% | |
| ATCACCGGTACAGGTTATCC+TGG | + | chr3.1:1541800-1541819 | MS.gene009322:intron | 50.0% | |
| ATTGTTTGGCGTGCTTCACG+TGG | - | chr3.1:1542456-1542475 | None:intergenic | 50.0% | |
| CAAAGAGACATCACCGGTAC+AGG | + | chr3.1:1541791-1541810 | MS.gene009322:intron | 50.0% | |
| CACGGACACTGTAAACGACA+TGG | + | chr3.1:1539854-1539873 | MS.gene009322:intron | 50.0% | |
| CAGCACTAGGGAAGGTTGTA+AGG | + | chr3.1:1542344-1542363 | MS.gene009322:CDS | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr3.1:1540475-1540494 | MS.gene009322:intron | 50.0% | |
| CTAAGCCATGAACAGGATGC+AGG | - | chr3.1:1541118-1541137 | None:intergenic | 50.0% | |
| CTGCATCCTGTTCATGGCTT+AGG | + | chr3.1:1541116-1541135 | MS.gene009322:intron | 50.0% | |
| CTTACAACCTTCCCTAGTGC+TGG | - | chr3.1:1542346-1542365 | None:intergenic | 50.0% | |
| GCACAGACACTCCTCGAATT+AGG | - | chr3.1:1539970-1539989 | None:intergenic | 50.0% | |
| GTGACAGTGGAACCGAATGA+TGG | + | chr3.1:1542024-1542043 | MS.gene009322:intron | 50.0% | |
| TAAACCAAGGGCCAGCACTA+GGG | + | chr3.1:1542332-1542351 | MS.gene009322:CDS | 50.0% | |
| TCACCGGTACAGGTTATCCT+GGG | + | chr3.1:1541801-1541820 | MS.gene009322:intron | 50.0% | |
| TCCTGTTCATGGCTTAGGTC+TGG | + | chr3.1:1541121-1541140 | MS.gene009322:intron | 50.0% | |
| TGTGTGTGTGTGTGTGTCAG+TGG | - | chr3.1:1540046-1540065 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr3.1:1540478-1540497 | None:intergenic | 50.0% |
| AACCATGCAACCCAAGGCCA+AGG | - | chr3.1:1539531-1539550 | None:intergenic | 55.0% | |
| AACCCGAACCATGCAACCCA+AGG | - | chr3.1:1539537-1539556 | None:intergenic | 55.0% | |
| AATTAGGCGTGCCCTGGAGT+CGG | - | chr3.1:1539954-1539973 | None:intergenic | 55.0% | |
| ACACTAGTGTGTCCGACTCC+AGG | + | chr3.1:1539939-1539958 | MS.gene009322:intron | 55.0% | |
| ACCATGCAACCCAAGGCCAA+GGG | - | chr3.1:1539530-1539549 | None:intergenic | 55.0% | |
| CACCGGTACAGGTTATCCTG+GGG | + | chr3.1:1541802-1541821 | MS.gene009322:intron | 55.0% | |
| CACTAGTGTGTCCGACTCCA+GGG | + | chr3.1:1539940-1539959 | MS.gene009322:intron | 55.0% | |
| CTCCCCAGGATAACCTGTAC+CGG | - | chr3.1:1541807-1541826 | None:intergenic | 55.0% | |
| CTGGCCCTTGGTTTACGAAC+TGG | - | chr3.1:1542327-1542346 | None:intergenic | 55.0% | |
| GAAGGAAAAGGCGATGCAGG+TGG | + | chr3.1:1541668-1541687 | MS.gene009322:intron | 55.0% | |
| GTAAACCAAGGGCCAGCACT+AGG | + | chr3.1:1542331-1542350 | MS.gene009322:CDS | 55.0% | |
| GTGTGTGTCAGTGGTGTGTC+TGG | - | chr3.1:1540037-1540056 | None:intergenic | 55.0% | |
| TGCAGGTGGGAAAGAGCTTC+TGG | + | chr3.1:1541682-1541701 | MS.gene009322:intron | 55.0% | |
| TGTGATGTCTTGTCGGCGCT+CGG | + | chr3.1:1542221-1542240 | MS.gene009322:CDS | 55.0% | |
| ! | TGGCCTTGGGTTGCATGGTT+CGG | + | chr3.1:1539531-1539550 | MS.gene009322:intron | 55.0% |
| !! | AGTTGATGGAAGTGACGGGG+CGG | + | chr3.1:1540976-1540995 | MS.gene009322:intron | 55.0% |
| AGGATTCTCGCCCGCAGGTT+TGG | + | chr3.1:1542255-1542274 | MS.gene009322:CDS | 60.0% | |
| ATGGTAGGATTCTCGCCCGC+AGG | + | chr3.1:1542250-1542269 | MS.gene009322:CDS | 60.0% | |
| GGCGCTCGGAAAGAGATGGT+AGG | + | chr3.1:1542235-1542254 | MS.gene009322:CDS | 60.0% | |
| TCCAGGGCACGCCTAATTCG+AGG | + | chr3.1:1539956-1539975 | MS.gene009322:intron | 60.0% | |
| TCCTCGAATTAGGCGTGCCC+TGG | - | chr3.1:1539960-1539979 | None:intergenic | 60.0% | |
| TGACGGGGCGGAAGTTTCTG+GGG | + | chr3.1:1540988-1541007 | MS.gene009322:intron | 60.0% | |
| TGTCGGCGCTCGGAAAGAGA+TGG | + | chr3.1:1542231-1542250 | MS.gene009322:CDS | 60.0% | |
| ! | AGTGACGGGGCGGAAGTTTC+TGG | + | chr3.1:1540986-1541005 | MS.gene009322:intron | 60.0% |
| ! | GGCCTTGGGTTGCATGGTTC+GGG | + | chr3.1:1539532-1539551 | MS.gene009322:intron | 60.0% |
| ! | GTGACGGGGCGGAAGTTTCT+GGG | + | chr3.1:1540987-1541006 | MS.gene009322:intron | 60.0% |
| !! | ACCCTTGGCCTTGGGTTGCA+TGG | + | chr3.1:1539526-1539545 | MS.gene009322:intron | 60.0% |
| CCAAGGGCCAGCACTAGGGA+AGG | + | chr3.1:1542336-1542355 | MS.gene009322:CDS | 65.0% | |
| ! | GGGGCGGAAGTTTCTGGGGA+TGG | + | chr3.1:1540992-1541011 | MS.gene009322:intron | 65.0% |
| !! | CCTTCCCTAGTGCTGGCCCT+TGG | - | chr3.1:1542339-1542358 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 1539302 | 1543072 | 1539302 | ID=MS.gene009322 |
| chr3.1 | mRNA | 1539302 | 1543072 | 1539302 | ID=MS.gene009322.t1;Parent=MS.gene009322 |
| chr3.1 | exon | 1539302 | 1539361 | 1539302 | ID=MS.gene009322.t1.exon1;Parent=MS.gene009322.t1 |
| chr3.1 | CDS | 1539302 | 1539361 | 1539302 | ID=cds.MS.gene009322.t1;Parent=MS.gene009322.t1 |
| chr3.1 | exon | 1539659 | 1539734 | 1539659 | ID=MS.gene009322.t1.exon2;Parent=MS.gene009322.t1 |
| chr3.1 | CDS | 1539659 | 1539734 | 1539659 | ID=cds.MS.gene009322.t1;Parent=MS.gene009322.t1 |
| chr3.1 | exon | 1542031 | 1542476 | 1542031 | ID=MS.gene009322.t1.exon3;Parent=MS.gene009322.t1 |
| chr3.1 | CDS | 1542031 | 1542476 | 1542031 | ID=cds.MS.gene009322.t1;Parent=MS.gene009322.t1 |
| chr3.1 | exon | 1542872 | 1543072 | 1542872 | ID=MS.gene009322.t1.exon4;Parent=MS.gene009322.t1 |
| chr3.1 | CDS | 1542872 | 1543072 | 1542872 | ID=cds.MS.gene009322.t1;Parent=MS.gene009322.t1 |
| Gene Sequence |
| Protein sequence |
