Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009349.t1 | XP_024632961.1 | 84.5 | 800 | 96 | 4 | 1 | 772 | 1 | 800 | 0.00E+00 | 1352 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009349.t1 | Q9SZL8 | 27.0 | 636 | 394 | 11 | 32 | 665 | 70 | 637 | 4.4e-64 | 247.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009349.t1 | D3YBB9 | 76.6 | 774 | 161 | 4 | 1 | 764 | 49 | 812 | 0.0e+00 | 1191.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene009349.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009349.t1 | MTR_0558s0020 | 87.500 | 296 | 36 | 1 | 1 | 295 | 1 | 296 | 0.0 | 548 |
MS.gene009349.t1 | MTR_1g083640 | 83.099 | 284 | 32 | 1 | 1 | 268 | 1 | 284 | 2.59e-172 | 497 |
MS.gene009349.t1 | MTR_8g446020 | 73.559 | 295 | 39 | 1 | 1 | 295 | 1 | 256 | 1.08e-151 | 443 |
MS.gene009349.t1 | MTR_6g090505 | 83.544 | 237 | 39 | 0 | 65 | 301 | 1 | 237 | 3.58e-142 | 423 |
MS.gene009349.t1 | MTR_6g090505 | 67.647 | 102 | 6 | 2 | 396 | 495 | 230 | 306 | 3.95e-34 | 134 |
MS.gene009349.t1 | MTR_6g090505 | 75.510 | 49 | 12 | 0 | 567 | 615 | 314 | 362 | 9.27e-11 | 64.7 |
MS.gene009349.t1 | MTR_2g014100 | 82.041 | 245 | 35 | 1 | 1 | 236 | 1 | 245 | 2.74e-141 | 416 |
MS.gene009349.t1 | MTR_0337s0040 | 71.648 | 261 | 34 | 2 | 1 | 260 | 1 | 222 | 2.27e-123 | 369 |
MS.gene009349.t1 | MTR_3g008240 | 84.236 | 203 | 31 | 1 | 1 | 202 | 1 | 203 | 8.45e-118 | 353 |
MS.gene009349.t1 | MTR_4g040430 | 83.663 | 202 | 29 | 1 | 1 | 202 | 1 | 198 | 3.08e-117 | 352 |
MS.gene009349.t1 | MTR_0337s0060 | 58.228 | 316 | 32 | 4 | 447 | 759 | 21 | 239 | 5.84e-107 | 327 |
MS.gene009349.t1 | MTR_5g071590 | 73.889 | 180 | 34 | 2 | 1 | 167 | 1 | 180 | 7.45e-90 | 280 |
MS.gene009349.t1 | MTR_1g055240 | 87.324 | 142 | 18 | 0 | 91 | 232 | 3 | 144 | 3.52e-86 | 270 |
MS.gene009349.t1 | MTR_0019s0290 | 81.579 | 152 | 28 | 0 | 82 | 233 | 9 | 160 | 2.98e-85 | 267 |
MS.gene009349.t1 | MTR_3g028680 | 81.013 | 158 | 27 | 1 | 618 | 772 | 1 | 158 | 1.62e-83 | 264 |
MS.gene009349.t1 | MTR_2g067090 | 77.419 | 155 | 32 | 1 | 621 | 772 | 99 | 253 | 2.60e-74 | 243 |
MS.gene009349.t1 | MTR_4g133495 | 61.538 | 182 | 44 | 2 | 576 | 754 | 88 | 246 | 3.18e-65 | 218 |
MS.gene009349.t1 | MTR_4g133340 | 61.538 | 182 | 44 | 2 | 576 | 754 | 88 | 246 | 3.18e-65 | 218 |
MS.gene009349.t1 | MTR_1281s0010 | 81.651 | 109 | 20 | 0 | 19 | 127 | 1 | 109 | 6.39e-57 | 190 |
MS.gene009349.t1 | MTR_6g051425 | 32.075 | 318 | 185 | 6 | 40 | 341 | 22 | 324 | 1.02e-38 | 147 |
MS.gene009349.t1 | MTR_4g008820 | 83.750 | 80 | 12 | 1 | 1 | 79 | 125 | 204 | 1.91e-31 | 131 |
MS.gene009349.t1 | MTR_8g046060 | 77.273 | 88 | 11 | 2 | 1 | 79 | 91 | 178 | 3.81e-31 | 122 |
MS.gene009349.t1 | MTR_2g067130 | 61.728 | 81 | 25 | 2 | 695 | 772 | 46 | 123 | 3.10e-21 | 91.7 |
MS.gene009349.t1 | MTR_1g070355 | 26.852 | 324 | 216 | 6 | 41 | 362 | 80 | 384 | 2.35e-19 | 93.2 |
MS.gene009349.t1 | MTR_0402s0040 | 25.405 | 185 | 119 | 4 | 49 | 233 | 40 | 205 | 1.83e-14 | 77.0 |
MS.gene009349.t1 | MTR_0337s0050 | 75.000 | 36 | 9 | 0 | 259 | 294 | 14 | 49 | 1.57e-13 | 67.0 |
MS.gene009349.t1 | MTR_4g035820 | 22.414 | 290 | 192 | 7 | 17 | 299 | 61 | 324 | 6.76e-13 | 72.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009349.t1 | AT4G38180 | 27.769 | 641 | 383 | 13 | 32 | 665 | 70 | 637 | 1.21e-70 | 247 |
MS.gene009349.t1 | AT4G15090 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 2.01e-59 | 216 |
MS.gene009349.t1 | AT4G15090 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 2.01e-59 | 216 |
MS.gene009349.t1 | AT4G15090 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 2.01e-59 | 216 |
MS.gene009349.t1 | AT4G15090 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 2.01e-59 | 216 |
MS.gene009349.t1 | AT4G15090 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 2.01e-59 | 216 |
MS.gene009349.t1 | AT2G27110 | 24.930 | 714 | 424 | 19 | 10 | 719 | 29 | 634 | 3.94e-53 | 198 |
MS.gene009349.t1 | AT2G27110 | 24.930 | 714 | 424 | 19 | 10 | 719 | 29 | 634 | 3.94e-53 | 198 |
MS.gene009349.t1 | AT2G27110 | 27.112 | 509 | 314 | 11 | 213 | 719 | 36 | 489 | 2.68e-52 | 194 |
MS.gene009349.t1 | AT3G06250 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 4.92e-52 | 194 |
MS.gene009349.t1 | AT3G06250 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 4.92e-52 | 194 |
MS.gene009349.t1 | AT3G06250 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 4.92e-52 | 194 |
MS.gene009349.t1 | AT1G76320 | 24.815 | 677 | 413 | 19 | 50 | 720 | 12 | 598 | 2.45e-50 | 188 |
MS.gene009349.t1 | AT1G76320 | 24.852 | 676 | 412 | 19 | 50 | 719 | 12 | 597 | 1.14e-49 | 187 |
MS.gene009349.t1 | AT1G76320 | 24.852 | 676 | 412 | 19 | 50 | 719 | 12 | 597 | 1.28e-49 | 187 |
MS.gene009349.t1 | AT1G76320 | 24.852 | 676 | 412 | 19 | 50 | 719 | 12 | 597 | 1.28e-49 | 187 |
MS.gene009349.t1 | AT3G22170 | 22.774 | 685 | 425 | 16 | 34 | 708 | 69 | 659 | 9.88e-48 | 182 |
MS.gene009349.t1 | AT3G22170 | 22.774 | 685 | 425 | 16 | 34 | 708 | 69 | 659 | 9.88e-48 | 182 |
MS.gene009349.t1 | AT5G18960 | 24.730 | 647 | 359 | 18 | 24 | 661 | 200 | 727 | 2.10e-46 | 178 |
MS.gene009349.t1 | AT5G18960 | 24.730 | 647 | 359 | 18 | 24 | 661 | 200 | 727 | 2.10e-46 | 178 |
MS.gene009349.t1 | AT4G38170 | 24.532 | 481 | 295 | 13 | 235 | 703 | 24 | 448 | 9.72e-44 | 167 |
MS.gene009349.t1 | AT1G10240 | 24.719 | 623 | 377 | 19 | 49 | 659 | 62 | 604 | 5.27e-42 | 164 |
MS.gene009349.t1 | AT1G10240 | 24.719 | 623 | 377 | 19 | 49 | 659 | 62 | 604 | 5.27e-42 | 164 |
MS.gene009349.t1 | AT5G28530 | 24.100 | 639 | 388 | 17 | 40 | 660 | 60 | 619 | 5.46e-42 | 164 |
MS.gene009349.t1 | AT5G28530 | 23.944 | 639 | 385 | 18 | 40 | 660 | 60 | 615 | 6.68e-41 | 160 |
MS.gene009349.t1 | AT5G28530 | 23.944 | 639 | 385 | 18 | 40 | 660 | 60 | 615 | 6.68e-41 | 160 |
MS.gene009349.t1 | AT2G32250 | 23.624 | 745 | 432 | 21 | 4 | 743 | 10 | 622 | 3.28e-39 | 156 |
MS.gene009349.t1 | AT2G32250 | 23.490 | 745 | 433 | 20 | 4 | 743 | 10 | 622 | 4.79e-39 | 155 |
MS.gene009349.t1 | AT2G32250 | 23.490 | 745 | 433 | 20 | 4 | 743 | 10 | 622 | 4.79e-39 | 155 |
MS.gene009349.t1 | AT2G32250 | 23.624 | 745 | 432 | 21 | 4 | 743 | 10 | 622 | 4.88e-39 | 155 |
MS.gene009349.t1 | AT2G32250 | 23.624 | 745 | 432 | 21 | 4 | 743 | 10 | 622 | 4.88e-39 | 155 |
MS.gene009349.t1 | AT2G32250 | 23.624 | 745 | 432 | 21 | 4 | 743 | 10 | 622 | 4.88e-39 | 155 |
MS.gene009349.t1 | AT2G32250 | 23.446 | 708 | 408 | 18 | 41 | 743 | 3 | 581 | 2.81e-38 | 153 |
MS.gene009349.t1 | AT2G32250 | 23.446 | 708 | 408 | 18 | 41 | 743 | 3 | 581 | 2.88e-38 | 153 |
MS.gene009349.t1 | AT1G80010 | 23.913 | 644 | 385 | 23 | 41 | 662 | 101 | 661 | 6.94e-37 | 148 |
MS.gene009349.t1 | AT1G52520 | 22.080 | 625 | 407 | 16 | 41 | 662 | 91 | 638 | 1.76e-33 | 138 |
MS.gene009349.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 2.64e-27 | 119 |
MS.gene009349.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.35e-12 | 71.2 |
MS.gene009349.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 106 | 369 | 2.65e-27 | 118 |
MS.gene009349.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 438 | 558 | 2.18e-12 | 71.2 |
MS.gene009349.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 2.81e-27 | 119 |
MS.gene009349.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.24e-12 | 71.2 |
MS.gene009349.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 2.81e-27 | 119 |
MS.gene009349.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.24e-12 | 71.2 |
MS.gene009349.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 177 | 440 | 2.85e-27 | 119 |
MS.gene009349.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 509 | 629 | 2.55e-12 | 70.9 |
MS.gene009349.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.88e-27 | 118 |
MS.gene009349.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.32e-12 | 71.2 |
MS.gene009349.t1 | AT4G19990 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.88e-27 | 118 |
MS.gene009349.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.32e-12 | 71.2 |
MS.gene009349.t1 | AT5G28530 | 21.781 | 629 | 352 | 20 | 40 | 660 | 60 | 556 | 1.09e-22 | 103 |
MS.gene009349.t1 | AT5G28530 | 21.622 | 629 | 349 | 21 | 40 | 660 | 60 | 552 | 7.31e-22 | 101 |
Find 113 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 3.2:+1587555 | MS.gene009349:CDS |
AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 3.2:-1588381 | None:intergenic |
CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 3.2:+1587513 | MS.gene009349:CDS |
CAACAAGATTATGCTCTATT+TGG | 0.198611 | 3.2:+1586462 | MS.gene009349:CDS |
TTCATTTCAGCTGCCTTTCT+TGG | 0.201003 | 3.2:+1586965 | MS.gene009349:intron |
CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 3.2:+1586998 | MS.gene009349:CDS |
TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 3.2:-1587092 | None:intergenic |
TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 3.2:-1588375 | None:intergenic |
AATCAGATTTCGACTACAAT+TGG | 0.318540 | 3.2:+1587287 | MS.gene009349:CDS |
TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 3.2:+1588227 | MS.gene009349:CDS |
ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 3.2:-1587110 | None:intergenic |
GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 3.2:-1586512 | None:intergenic |
AGTTTCGAATGTTGATGTTT+TGG | 0.346702 | 3.2:+1587810 | MS.gene009349:CDS |
TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 3.2:+1587387 | MS.gene009349:CDS |
AACAATAAATATCGGCCATT+AGG | 0.388497 | 3.2:+1586519 | MS.gene009349:CDS |
ACCGAACAAACAATAAATAT+CGG | 0.389395 | 3.2:+1586511 | MS.gene009349:CDS |
GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 3.2:+1587386 | MS.gene009349:CDS |
GTCTTTAGTGCCAACATTCA+TGG | 0.395146 | 3.2:-1588103 | None:intergenic |
TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 3.2:-1585982 | None:intergenic |
AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 3.2:+1588367 | MS.gene009349:CDS |
TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 3.2:-1588357 | None:intergenic |
TTCCTTCAAATACTATTATG+AGG | 0.399583 | 3.2:+1587687 | MS.gene009349:CDS |
GAGGAGTTTCTTATTTCTAA+AGG | 0.403538 | 3.2:+1588252 | MS.gene009349:CDS |
TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 3.2:+1585753 | MS.gene009349:CDS |
CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 3.2:+1587935 | MS.gene009349:CDS |
GATTATGATCTTCAAACCTT+GGG | 0.413114 | 3.2:-1587858 | None:intergenic |
ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 3.2:+1585824 | MS.gene009349:CDS |
CTCAACGGTGTTCTTGAGGC+AGG | 0.425120 | 3.2:+1588219 | MS.gene009349:CDS |
CGATTATGATCTTCAAACCT+TGG | 0.425681 | 3.2:-1587859 | None:intergenic |
CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 3.2:+1586159 | MS.gene009349:CDS |
AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 3.2:+1586041 | MS.gene009349:CDS |
TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 3.2:-1587103 | None:intergenic |
GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 3.2:+1586024 | MS.gene009349:CDS |
CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 3.2:-1588036 | None:intergenic |
CGTTATGTTTGTAACAAAGA+AGG | 0.449439 | 3.2:+1585907 | MS.gene009349:CDS |
ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 3.2:+1585678 | MS.gene009349:CDS |
TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 3.2:+1587177 | MS.gene009349:CDS |
GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 3.2:+1587341 | MS.gene009349:CDS |
ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 3.2:+1587936 | MS.gene009349:CDS |
ACTTTAATAAATTCTAAAGC+TGG | 0.468657 | 3.2:+1586189 | MS.gene009349:CDS |
ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 3.2:+1585873 | MS.gene009349:CDS |
GGGTTGTCACAGTCGACATT+GGG | 0.480993 | 3.2:+1587893 | MS.gene009349:CDS |
GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 3.2:+1586234 | MS.gene009349:CDS |
CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 3.2:-1587689 | None:intergenic |
TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 3.2:-1586018 | None:intergenic |
TTTAATTATGCATATAACAC+TGG | 0.485542 | 3.2:+1585811 | MS.gene009349:CDS |
TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 3.2:+1586302 | MS.gene009349:CDS |
ATGTCTGTGAACCATCTGTT+GGG | 0.488294 | 3.2:+1588328 | MS.gene009349:CDS |
CTCAAGTAGCACAAATGCTC+TGG | 0.489977 | 3.2:-1586129 | None:intergenic |
CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 3.2:+1585867 | MS.gene009349:CDS |
TATGAGGAGGACACAACAAA+AGG | 0.490908 | 3.2:+1587703 | MS.gene009349:CDS |
ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 3.2:-1586978 | None:intergenic |
ATCAGATTTCGACTACAATT+GGG | 0.491708 | 3.2:+1587288 | MS.gene009349:CDS |
CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 3.2:+1586315 | MS.gene009349:CDS |
ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 3.2:+1587527 | MS.gene009349:CDS |
GACCGCATAAGCTGACTGTT+GGG | 0.494135 | 3.2:-1587607 | None:intergenic |
AATGAAGCTCTTTCGAAACC+AGG | 0.496588 | 3.2:+1586369 | MS.gene009349:CDS |
GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 3.2:+1586221 | MS.gene009349:CDS |
TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 3.2:-1586407 | None:intergenic |
AAATGCTCTGGTTTATGTAA+TGG | 0.504865 | 3.2:-1586117 | None:intergenic |
CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 3.2:+1587374 | MS.gene009349:CDS |
ATCATAATCGACTTGATGAA+AGG | 0.507955 | 3.2:+1587872 | MS.gene009349:CDS |
TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 3.2:-1586273 | None:intergenic |
GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 3.2:+1587546 | MS.gene009349:CDS |
ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 3.2:+1587392 | MS.gene009349:CDS |
TGTCTATAAGATATATAAGT+GGG | 0.514682 | 3.2:+1586077 | MS.gene009349:CDS |
GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 3.2:-1587852 | None:intergenic |
TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 3.2:-1587495 | None:intergenic |
TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 3.2:+1585918 | MS.gene009349:CDS |
TCATAATCGACTTGATGAAA+GGG | 0.526860 | 3.2:+1587873 | MS.gene009349:CDS |
CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 3.2:-1587684 | None:intergenic |
AGGGTTGTCACAGTCGACAT+TGG | 0.538587 | 3.2:+1587892 | MS.gene009349:CDS |
AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 3.2:-1587490 | None:intergenic |
ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 3.2:+1587704 | MS.gene009349:CDS |
AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 3.2:+1585919 | MS.gene009349:CDS |
CATTTAGTGATAAAGAATCA+TGG | 0.546005 | 3.2:+1585743 | MS.gene009349:CDS |
ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 3.2:-1587123 | None:intergenic |
CTGAAATCCACCATGAATGT+TGG | 0.557140 | 3.2:+1588093 | MS.gene009349:CDS |
TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 3.2:+1585702 | MS.gene009349:CDS |
GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 3.2:+1586237 | MS.gene009349:CDS |
TGACCGCATAAGCTGACTGT+TGG | 0.571248 | 3.2:-1587608 | None:intergenic |
TACACGTGTTTGCGCAGATG+CGG | 0.571672 | 3.2:+1588179 | MS.gene009349:CDS |
ATGTCTATAAGATATATAAG+TGG | 0.572287 | 3.2:+1586076 | MS.gene009349:CDS |
ATTCCTCAACGGTGTTCTTG+AGG | 0.575305 | 3.2:+1588215 | MS.gene009349:CDS |
TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 3.2:-1588339 | None:intergenic |
TCAACGGTGTTCTTGAGGCA+GGG | 0.583882 | 3.2:+1588220 | MS.gene009349:CDS |
ATATTAACTTCATCTGAGAG+TGG | 0.588105 | 3.2:+1585667 | MS.gene009349:CDS |
TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 3.2:+1586228 | MS.gene009349:CDS |
ACCATATACACAGACCAGGC+TGG | 0.590176 | 3.2:+1587109 | MS.gene009349:CDS |
TTGAAGAAAACCTTTCCCCA+AGG | 0.594796 | 3.2:+1587842 | MS.gene009349:CDS |
GATGTCTGTGAACCATCTGT+TGG | 0.595331 | 3.2:+1588327 | MS.gene009349:CDS |
TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 3.2:-1588295 | None:intergenic |
GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 3.2:+1586308 | MS.gene009349:CDS |
AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 3.2:+1586222 | MS.gene009349:CDS |
AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 3.2:+1586311 | MS.gene009349:CDS |
ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 3.2:+1588182 | MS.gene009349:CDS |
ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 3.2:+1587605 | MS.gene009349:CDS |
CTTCAAATACTATTATGAGG+AGG | 0.607664 | 3.2:+1587690 | MS.gene009349:CDS |
TTGATATCGTTGCGCTTCAG+TGG | 0.611060 | 3.2:-1588127 | None:intergenic |
AGAACTGGACTGTCACATGT+TGG | 0.620791 | 3.2:-1585967 | None:intergenic |
AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 3.2:-1587343 | None:intergenic |
GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 3.2:+1586242 | MS.gene009349:CDS |
ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 3.2:-1587857 | None:intergenic |
GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 3.2:+1587178 | MS.gene009349:CDS |
TTTAGTGCCAACATTCATGG+TGG | 0.641441 | 3.2:-1588100 | None:intergenic |
CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 3.2:+1587528 | MS.gene009349:CDS |
GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 3.2:-1588078 | None:intergenic |
TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 3.2:-1587649 | None:intergenic |
CTGCCTCAAGAACACCGTTG+AGG | 0.660876 | 3.2:-1588218 | None:intergenic |
CATGTCGACATAAGAAACCC+CGG | 0.663279 | 3.2:-1587954 | None:intergenic |
GCATCTGAAATATTCCTCAA+CGG | 0.665484 | 3.2:+1588204 | MS.gene009349:CDS |
TCAAACCATATACACAGACC+AGG | 0.671057 | 3.2:+1587105 | MS.gene009349:CDS |
TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 3.2:+1587937 | MS.gene009349:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAACCATAATTATAGTTTAA+TGG | - | chr3.2:1588719-1588738 | None:intergenic | 15.0% |
!! | AAACCATTAAACTATAATTA+TGG | + | chr3.2:1588713-1588732 | MS.gene009349:intron | 15.0% |
!!! | TGTTTTTTATGTTATAAGTT+AGG | + | chr3.2:1588507-1588526 | MS.gene009349:intron | 15.0% |
!! | ATGTCTATAAGATATATAAG+TGG | + | chr3.2:1586076-1586095 | MS.gene009349:CDS | 20.0% |
!! | CAATTCACAAAATAAGAAAT+CGG | + | chr3.2:1585867-1585886 | MS.gene009349:CDS | 20.0% |
!! | TGTCTATAAGATATATAAGT+GGG | + | chr3.2:1586077-1586096 | MS.gene009349:CDS | 20.0% |
!! | TTTAATTATGCATATAACAC+TGG | + | chr3.2:1585811-1585830 | MS.gene009349:CDS | 20.0% |
!!! | AATTTAATGTTCTGGTTTAT+GGG | + | chr3.2:1586694-1586713 | MS.gene009349:intron | 20.0% |
!!! | ACTTTAATAAATTCTAAAGC+TGG | + | chr3.2:1586189-1586208 | MS.gene009349:CDS | 20.0% |
!!! | ATGATGAAAAACTGTTTTAA+TGG | + | chr3.2:1587316-1587335 | MS.gene009349:CDS | 20.0% |
!!! | CTATACATTTTCACATTTTT+TGG | + | chr3.2:1588650-1588669 | MS.gene009349:intron | 20.0% |
!!! | TGAATGTTTATATTGATTGA+AGG | + | chr3.2:1586666-1586685 | MS.gene009349:intron | 20.0% |
!!! | TTTTGATGAGTTAACTAATT+TGG | + | chr3.2:1587246-1587265 | MS.gene009349:CDS | 20.0% |
! | AAAACACCTTGAAAAACATT+CGG | - | chr3.2:1587154-1587173 | None:intergenic | 25.0% |
! | AATTCTTGATTGTTATGCAT+TGG | + | chr3.2:1588605-1588624 | MS.gene009349:intron | 25.0% |
! | ACAAAATAAGAAATCGGATA+AGG | + | chr3.2:1585873-1585892 | MS.gene009349:CDS | 25.0% |
! | ACCGAACAAACAATAAATAT+CGG | + | chr3.2:1586511-1586530 | MS.gene009349:CDS | 25.0% |
! | AGTACAAAATACTAACCTAA+TGG | - | chr3.2:1586537-1586556 | None:intergenic | 25.0% |
! | CATAATAGTATTTGAAGGAA+AGG | - | chr3.2:1587687-1587706 | None:intergenic | 25.0% |
! | CATTTAGTGATAAAGAATCA+TGG | + | chr3.2:1585743-1585762 | MS.gene009349:CDS | 25.0% |
! | CTTTAGTCATTTCAACATTA+TGG | + | chr3.2:1587513-1587532 | MS.gene009349:CDS | 25.0% |
! | TGAAAATTCAGTTATTGATG+CGG | + | chr3.2:1585702-1585721 | MS.gene009349:CDS | 25.0% |
! | TGAAATTTGAATGAATGTTC+TGG | + | chr3.2:1586584-1586603 | MS.gene009349:intron | 25.0% |
! | TGAATAAATGAAAAGCAAGA+TGG | - | chr3.2:1587652-1587671 | None:intergenic | 25.0% |
! | TGATGCTTTAACTAAAAAAG+CGG | + | chr3.2:1588538-1588557 | MS.gene009349:intron | 25.0% |
! | TTCCTTCAAATACTATTATG+AGG | + | chr3.2:1587687-1587706 | MS.gene009349:CDS | 25.0% |
!! | AGGTTTAGAATTTAATGTTC+TGG | + | chr3.2:1586686-1586705 | MS.gene009349:intron | 25.0% |
!! | TGTTGTATTTTGTTCTGATT+TGG | + | chr3.2:1586942-1586961 | MS.gene009349:intron | 25.0% |
!! | TTGGTTTGAATATTATCTTC+TGG | + | chr3.2:1588624-1588643 | MS.gene009349:intron | 25.0% |
!! | TTTTCAATTACTGAGTTAAG+TGG | + | chr3.2:1588747-1588766 | MS.gene009349:intron | 25.0% |
!!! | CTTATTTTGTGAATTGTTCT+TGG | - | chr3.2:1585863-1585882 | None:intergenic | 25.0% |
!!! | GAATTTAATGTTCTGGTTTA+TGG | + | chr3.2:1586693-1586712 | MS.gene009349:intron | 25.0% |
!!! | TGAAAAACTGTTTTAATGGA+AGG | + | chr3.2:1587320-1587339 | MS.gene009349:CDS | 25.0% |
!!! | TGGTTTTAACGCATTTAATT+TGG | + | chr3.2:1588670-1588689 | MS.gene009349:intron | 25.0% |
AAACACATATGATCTTTCCA+TGG | - | chr3.2:1586757-1586776 | None:intergenic | 30.0% | |
AACAAAGAAGGTTTCAAGAA+GGG | + | chr3.2:1585919-1585938 | MS.gene009349:CDS | 30.0% | |
AACAATAAATATCGGCCATT+AGG | + | chr3.2:1586519-1586538 | MS.gene009349:CDS | 30.0% | |
AAGAAAGACCAAATCCAATT+AGG | + | chr3.2:1588367-1588386 | MS.gene009349:CDS | 30.0% | |
AATCAGATTTCGACTACAAT+TGG | + | chr3.2:1587287-1587306 | MS.gene009349:CDS | 30.0% | |
AGAACATCTTATGAAGTGAT+GGG | + | chr3.2:1586222-1586241 | MS.gene009349:CDS | 30.0% | |
ATATTAACTTCATCTGAGAG+TGG | + | chr3.2:1585667-1585686 | MS.gene009349:CDS | 30.0% | |
ATCAGATTTCGACTACAATT+GGG | + | chr3.2:1587288-1587307 | MS.gene009349:CDS | 30.0% | |
ATGATTGTCAAAACCAAGAA+AGG | - | chr3.2:1586981-1587000 | None:intergenic | 30.0% | |
ATTATGATCTTCAAACCTTG+GGG | - | chr3.2:1587860-1587879 | None:intergenic | 30.0% | |
CAACAAGATTATGCTCTATT+TGG | + | chr3.2:1586462-1586481 | MS.gene009349:CDS | 30.0% | |
CGTTATGTTTGTAACAAAGA+AGG | + | chr3.2:1585907-1585926 | MS.gene009349:CDS | 30.0% | |
CTCCTCATAATAGTATTTGA+AGG | - | chr3.2:1587692-1587711 | None:intergenic | 30.0% | |
CTGGTATATGTGTGTTAATT+TGG | + | chr3.2:1586623-1586642 | MS.gene009349:intron | 30.0% | |
CTTCAAATACTATTATGAGG+AGG | + | chr3.2:1587690-1587709 | MS.gene009349:CDS | 30.0% | |
GAGAATGCAAAGAAAAATCT+CGG | + | chr3.2:1587202-1587221 | MS.gene009349:CDS | 30.0% | |
GATTATGATCTTCAAACCTT+GGG | - | chr3.2:1587861-1587880 | None:intergenic | 30.0% | |
GCCGATATTTATTGTTTGTT+CGG | - | chr3.2:1586515-1586534 | None:intergenic | 30.0% | |
TAAAGAAAAACCAGAGGAAA+GGG | + | chr3.2:1586008-1586027 | MS.gene009349:CDS | 30.0% | |
TAAAGAATCATGGAAGTCTT+TGG | + | chr3.2:1585753-1585772 | MS.gene009349:CDS | 30.0% | |
TAAAGAATCGAACAAGTGAA+TGG | - | chr3.2:1587498-1587517 | None:intergenic | 30.0% | |
TAACAAAGAAGGTTTCAAGA+AGG | + | chr3.2:1585918-1585937 | MS.gene009349:CDS | 30.0% | |
TGGATATCATAGTAAAAACC+TGG | - | chr3.2:1586390-1586409 | None:intergenic | 30.0% | |
TTCTTTGACCTAATTGGATT+TGG | - | chr3.2:1588378-1588397 | None:intergenic | 30.0% | |
TTTAAGTCCGAAAATCGAAA+AGG | - | chr3.2:1586276-1586295 | None:intergenic | 30.0% | |
TTTCTATTTACACAGCACAA+TGG | + | chr3.2:1586901-1586920 | MS.gene009349:intron | 30.0% | |
! | AAATGCTCTGGTTTATGTAA+TGG | - | chr3.2:1586120-1586139 | None:intergenic | 30.0% |
! | AGCTGGAATATATTTGAAGT+TGG | + | chr3.2:1586041-1586060 | MS.gene009349:CDS | 30.0% |
! | AGTTTCGAATGTTGATGTTT+TGG | + | chr3.2:1587810-1587829 | MS.gene009349:CDS | 30.0% |
! | CAAAGTTTTCACAATTGAGA+AGG | + | chr3.2:1587747-1587766 | MS.gene009349:CDS | 30.0% |
! | GAATCTTCCTTTTCGATTTT+CGG | + | chr3.2:1586266-1586285 | MS.gene009349:CDS | 30.0% |
! | TATGGTTTGAGGTTTCTTAT+TGG | - | chr3.2:1587095-1587114 | None:intergenic | 30.0% |
! | TCAATTCCGAATGTTTTTCA+AGG | + | chr3.2:1587145-1587164 | MS.gene009349:CDS | 30.0% |
! | TCAGTTTTCAATTCAATGAG+TGG | - | chr3.2:1588891-1588910 | None:intergenic | 30.0% |
! | TTTGGTCTTTCTTTGAACTT+TGG | - | chr3.2:1588360-1588379 | None:intergenic | 30.0% |
!! | ACATGTTTTCAAGATTTTGG+AGG | + | chr3.2:1587972-1587991 | MS.gene009349:CDS | 30.0% |
!! | ATCATAATCGACTTGATGAA+AGG | + | chr3.2:1587872-1587891 | MS.gene009349:CDS | 30.0% |
!! | ATGTTCTGGTTTAGAATTGA+AGG | + | chr3.2:1586598-1586617 | MS.gene009349:intron | 30.0% |
!! | GAGGAGTTTCTTATTTCTAA+AGG | + | chr3.2:1588252-1588271 | MS.gene009349:CDS | 30.0% |
!! | TCATAATCGACTTGATGAAA+GGG | + | chr3.2:1587873-1587892 | MS.gene009349:CDS | 30.0% |
!! | TCGACATGTTTTCAAGATTT+TGG | + | chr3.2:1587969-1587988 | MS.gene009349:CDS | 30.0% |
!!! | AAGACATAGCCAGTATTTTT+TGG | + | chr3.2:1586424-1586443 | MS.gene009349:CDS | 30.0% |
!!! | AGACATAGCCAGTATTTTTT+GGG | + | chr3.2:1586425-1586444 | MS.gene009349:CDS | 30.0% |
!!! | CTGCACAATATGTTTTAAAG+CGG | + | chr3.2:1588037-1588056 | MS.gene009349:CDS | 30.0% |
!!! | GTTTTTCAAGGTGTTTTTCA+TGG | + | chr3.2:1587157-1587176 | MS.gene009349:CDS | 30.0% |
ACATTATGGTTCAGAGAATG+AGG | + | chr3.2:1587527-1587546 | MS.gene009349:CDS | 35.0% | |
ATAACACTGGATTCTCTGTT+AGG | + | chr3.2:1585824-1585843 | MS.gene009349:CDS | 35.0% | |
CATTATGGTTCAGAGAATGA+GGG | + | chr3.2:1587528-1587547 | MS.gene009349:CDS | 35.0% | |
CGAGAAGTAAATGAAGTTCA+AGG | + | chr3.2:1586159-1586178 | MS.gene009349:CDS | 35.0% | |
CGATTATGATCTTCAAACCT+TGG | - | chr3.2:1587862-1587881 | None:intergenic | 35.0% | |
CTAAAGAAAAACCAGAGGAA+AGG | + | chr3.2:1586007-1586026 | MS.gene009349:CDS | 35.0% | |
CTCATTCAAATCGTATGCAT+TGG | + | chr3.2:1587374-1587393 | MS.gene009349:CDS | 35.0% | |
GAAAGCTAAAGAAAAACCAG+AGG | + | chr3.2:1586002-1586021 | MS.gene009349:CDS | 35.0% | |
GACAGAAATTCCTTATAGCT+CGG | + | chr3.2:1588433-1588452 | MS.gene009349:intron | 35.0% | |
GAGAACATCTTATGAAGTGA+TGG | + | chr3.2:1586221-1586240 | MS.gene009349:CDS | 35.0% | |
GTCTGCTTAATCCTAAAAAC+AGG | + | chr3.2:1585944-1585963 | MS.gene009349:CDS | 35.0% | |
TCTAATGACAACTCGTCAAA+AGG | + | chr3.2:1586302-1586321 | MS.gene009349:CDS | 35.0% | |
TGTACAGAGCATAAATTCCA+AGG | - | chr3.2:1586733-1586752 | None:intergenic | 35.0% | |
TTCTCATACTCAACAAGAAC+TGG | - | chr3.2:1585985-1586004 | None:intergenic | 35.0% | |
! | CATCGTAAGAGTGTGTTATT+TGG | + | chr3.2:1586998-1587017 | MS.gene009349:CDS | 35.0% |
! | CGAGGCTTTAACAAATTAAG+CGG | + | chr3.2:1588476-1588495 | MS.gene009349:intron | 35.0% |
! | GAGGCTTTAACAAATTAAGC+GGG | + | chr3.2:1588477-1588496 | MS.gene009349:intron | 35.0% |
! | GCATCTGAAATATTCCTCAA+CGG | + | chr3.2:1588204-1588223 | MS.gene009349:CDS | 35.0% |
! | TCTTTCAATGCTTTTCTTCG+TGG | + | chr3.2:1587457-1587476 | MS.gene009349:CDS | 35.0% |
! | TGGTTTAGAATTGAAGGTTC+TGG | + | chr3.2:1586604-1586623 | MS.gene009349:intron | 35.0% |
! | TTTTAATGGAAGGCCTACTT+CGG | + | chr3.2:1587330-1587349 | MS.gene009349:CDS | 35.0% |
! | TTTTTCATGGTCTTTGCTCA+TGG | + | chr3.2:1587170-1587189 | MS.gene009349:CDS | 35.0% |
!! | ACTGCTTTTGAAGACTTAGA+AGG | - | chr3.2:1588306-1588325 | None:intergenic | 35.0% |
!! | CGCTTTAAAACATATTGTGC+AGG | - | chr3.2:1588039-1588058 | None:intergenic | 35.0% |
!! | TATGCATTGGTCTTCAGTTT+GGG | + | chr3.2:1587387-1587406 | MS.gene009349:CDS | 35.0% |
!! | TTCAAGATTTTGGAGGTCTT+AGG | + | chr3.2:1587979-1587998 | MS.gene009349:CDS | 35.0% |
!!! | AGACATCAGCTACTTTTGAT+TGG | + | chr3.2:1587041-1587060 | MS.gene009349:CDS | 35.0% |
!!! | CACAATATGTTTTAAAGCGG+TGG | + | chr3.2:1588040-1588059 | MS.gene009349:CDS | 35.0% |
AATCGAACAAGTGAATGGTC+TGG | - | chr3.2:1587493-1587512 | None:intergenic | 40.0% | |
AATGAAGCTCTTTCGAAACC+AGG | + | chr3.2:1586369-1586388 | MS.gene009349:CDS | 40.0% | |
ACCTATGATCTTTGCATAGC+TGG | - | chr3.2:1586851-1586870 | None:intergenic | 40.0% | |
AGTCGCTTCTTTGACCTAAT+TGG | - | chr3.2:1588384-1588403 | None:intergenic | 40.0% | |
ATCTGAGAGTGGACAATTGA+CGG | + | chr3.2:1585678-1585697 | MS.gene009349:CDS | 40.0% | |
ATGAGGAGGACACAACAAAA+GGG | + | chr3.2:1587704-1587723 | MS.gene009349:CDS | 40.0% | |
ATGTCGTATGTTTGAGAACC+GGG | + | chr3.2:1587936-1587955 | MS.gene009349:CDS | 40.0% | |
ATGTCTGTGAACCATCTGTT+GGG | + | chr3.2:1588328-1588347 | MS.gene009349:CDS | 40.0% | |
ATTTATGCTCTGTACAGCCA+TGG | + | chr3.2:1586737-1586756 | MS.gene009349:intron | 40.0% | |
CATGTCGTATGTTTGAGAAC+CGG | + | chr3.2:1587935-1587954 | MS.gene009349:CDS | 40.0% | |
CTGAAATCCACCATGAATGT+TGG | + | chr3.2:1588093-1588112 | MS.gene009349:CDS | 40.0% | |
GAAGCAAAAGAAAGATGACG+AGG | + | chr3.2:1588458-1588477 | MS.gene009349:intron | 40.0% | |
GATTTCAGCTTATCGACAGA+CGG | - | chr3.2:1588081-1588100 | None:intergenic | 40.0% | |
GTCAATTCTGATGTAATGCG+CGG | + | chr3.2:1588834-1588853 | MS.gene009349:intron | 40.0% | |
GTCTTTAGTGCCAACATTCA+TGG | - | chr3.2:1588106-1588125 | None:intergenic | 40.0% | |
TATGAGGAGGACACAACAAA+AGG | + | chr3.2:1587703-1587722 | MS.gene009349:CDS | 40.0% | |
TCAAACCATATACACAGACC+AGG | + | chr3.2:1587105-1587124 | MS.gene009349:CDS | 40.0% | |
TCCAGCTATGCAAAGATCAT+AGG | + | chr3.2:1586847-1586866 | MS.gene009349:intron | 40.0% | |
TCCATCTGCCCAAAAAATAC+TGG | - | chr3.2:1586436-1586455 | None:intergenic | 40.0% | |
TGGTCTGTGTATATGGTTTG+AGG | - | chr3.2:1587106-1587125 | None:intergenic | 40.0% | |
TTCATTTCAGCTGCCTTTCT+TGG | + | chr3.2:1586965-1586984 | MS.gene009349:intron | 40.0% | |
TTGAAGAAAACCTTTCCCCA+AGG | + | chr3.2:1587842-1587861 | MS.gene009349:CDS | 40.0% | |
TTTAGTGCCAACATTCATGG+TGG | - | chr3.2:1588103-1588122 | None:intergenic | 40.0% | |
TTTGCTTCTTCCGAGCTATA+AGG | - | chr3.2:1588446-1588465 | None:intergenic | 40.0% | |
! | TCATGCTGAGTTGGACTTTA+AGG | + | chr3.2:1587555-1587574 | MS.gene009349:CDS | 40.0% |
! | TGAAGACTTAGAAGGCGTAA+CGG | - | chr3.2:1588298-1588317 | None:intergenic | 40.0% |
!! | AAGATTTTGGAGGTCTTAGG+TGG | + | chr3.2:1587982-1588001 | MS.gene009349:CDS | 40.0% |
!! | GTATGCATTGGTCTTCAGTT+TGG | + | chr3.2:1587386-1587405 | MS.gene009349:CDS | 40.0% |
!! | TCACATGTTGGCCTGTTTTT+AGG | - | chr3.2:1585958-1585977 | None:intergenic | 40.0% |
!! | TCTTATGAAGTGATGGGTCA+AGG | + | chr3.2:1586228-1586247 | MS.gene009349:CDS | 40.0% |
AACTCGTCAAAAGGAGATGG+TGG | + | chr3.2:1586311-1586330 | MS.gene009349:CDS | 45.0% | |
AGAACTGGACTGTCACATGT+TGG | - | chr3.2:1585970-1585989 | None:intergenic | 45.0% | |
AGCCACTTAAAGTCCGAAGT+AGG | - | chr3.2:1587346-1587365 | None:intergenic | 45.0% | |
ATCCCAACAGTCAGCTTATG+CGG | + | chr3.2:1587605-1587624 | MS.gene009349:CDS | 45.0% | |
ATTCCTCAACGGTGTTCTTG+AGG | + | chr3.2:1588215-1588234 | MS.gene009349:CDS | 45.0% | |
CATGTCGACATAAGAAACCC+CGG | - | chr3.2:1587957-1587976 | None:intergenic | 45.0% | |
CTCAAGTAGCACAAATGCTC+TGG | - | chr3.2:1586132-1586151 | None:intergenic | 45.0% | |
GAAAAACCAGAGGAAAGGGT+TGG | + | chr3.2:1586012-1586031 | MS.gene009349:CDS | 45.0% | |
GACAACTCGTCAAAAGGAGA+TGG | + | chr3.2:1586308-1586327 | MS.gene009349:CDS | 45.0% | |
GAGGGATAATCATGCTGAGT+TGG | + | chr3.2:1587546-1587565 | MS.gene009349:CDS | 45.0% | |
GATCTTCAAACCTTGGGGAA+AGG | - | chr3.2:1587855-1587874 | None:intergenic | 45.0% | |
GATGTCTGTGAACCATCTGT+TGG | + | chr3.2:1588327-1588346 | MS.gene009349:CDS | 45.0% | |
TGGGTGATTCTATCTTGCCT+TGG | + | chr3.2:1586713-1586732 | MS.gene009349:intron | 45.0% | |
TGTCGTATGTTTGAGAACCG+GGG | + | chr3.2:1587937-1587956 | MS.gene009349:CDS | 45.0% | |
TGTCTTCTGCAGCATCAACT+TGG | - | chr3.2:1586410-1586429 | None:intergenic | 45.0% | |
TGTTCTTGAGGCAGGGAAAA+AGG | + | chr3.2:1588227-1588246 | MS.gene009349:CDS | 45.0% | |
TTACAACCAACCCTTTCCTC+TGG | - | chr3.2:1586021-1586040 | None:intergenic | 45.0% | |
TTGATATCGTTGCGCTTCAG+TGG | - | chr3.2:1588130-1588149 | None:intergenic | 45.0% | |
! | GTGAGGTCACATTTTACAGC+TGG | + | chr3.2:1587409-1587428 | MS.gene009349:CDS | 45.0% |
!! | ATTGGTCTTCAGTTTGGGTG+AGG | + | chr3.2:1587392-1587411 | MS.gene009349:CDS | 45.0% |
!! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr3.2:1586024-1586043 | MS.gene009349:CDS | 45.0% |
!!! | GCCAGTATTTTTTGGGCAGA+TGG | + | chr3.2:1586432-1586451 | MS.gene009349:CDS | 45.0% |
ACCAGCCTGGTCTGTGTATA+TGG | - | chr3.2:1587113-1587132 | None:intergenic | 50.0% | |
ACCATATACACAGACCAGGC+TGG | + | chr3.2:1587109-1587128 | MS.gene009349:CDS | 50.0% | |
AGGGTTGTCACAGTCGACAT+TGG | + | chr3.2:1587892-1587911 | MS.gene009349:CDS | 50.0% | |
GACCGCATAAGCTGACTGTT+GGG | - | chr3.2:1587610-1587629 | None:intergenic | 50.0% | |
GGCCTACTTCGGACTTTAAG+TGG | + | chr3.2:1587341-1587360 | MS.gene009349:CDS | 50.0% | |
GGGTTGTCACAGTCGACATT+GGG | + | chr3.2:1587893-1587912 | MS.gene009349:CDS | 50.0% | |
GGTCTTTGCTCATGGCACAT+GGG | + | chr3.2:1587178-1587197 | MS.gene009349:CDS | 50.0% | |
TACACGTGTTTGCGCAGATG+CGG | + | chr3.2:1588179-1588198 | MS.gene009349:CDS | 50.0% | |
TCAACGGTGTTCTTGAGGCA+GGG | + | chr3.2:1588220-1588239 | MS.gene009349:CDS | 50.0% | |
TGACCGCATAAGCTGACTGT+TGG | - | chr3.2:1587611-1587630 | None:intergenic | 50.0% | |
TGGTCTTTGCTCATGGCACA+TGG | + | chr3.2:1587177-1587196 | MS.gene009349:CDS | 50.0% | |
! | TTTGGTGCAGTCCCAACAGA+TGG | - | chr3.2:1588342-1588361 | None:intergenic | 50.0% |
!! | GAAGTGATGGGTCAAGGAGT+TGG | + | chr3.2:1586234-1586253 | MS.gene009349:CDS | 50.0% |
ACTTCAACAACGCACCAGCC+TGG | - | chr3.2:1587126-1587145 | None:intergenic | 55.0% | |
CTCAACGGTGTTCTTGAGGC+AGG | + | chr3.2:1588219-1588238 | MS.gene009349:CDS | 55.0% | |
CTGCCTCAAGAACACCGTTG+AGG | - | chr3.2:1588221-1588240 | None:intergenic | 55.0% | |
TGAGGCAGGGAAAAAGGCAG+AGG | + | chr3.2:1588233-1588252 | MS.gene009349:CDS | 55.0% | |
! | CGTCAAAAGGAGATGGTGGC+TGG | + | chr3.2:1586315-1586334 | MS.gene009349:CDS | 55.0% |
!! | GTGATGGGTCAAGGAGTTGG+AGG | + | chr3.2:1586237-1586256 | MS.gene009349:CDS | 55.0% |
ACGTGTTTGCGCAGATGCGG+AGG | + | chr3.2:1588182-1588201 | MS.gene009349:CDS | 60.0% | |
GGGTCAAGGAGTTGGAGGCA+CGG | + | chr3.2:1586242-1586261 | MS.gene009349:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 1585658 | 1588977 | 1585658 | ID=MS.gene009349 |
chr3.2 | mRNA | 1585658 | 1588977 | 1585658 | ID=MS.gene009349.t1;Parent=MS.gene009349 |
chr3.2 | exon | 1585658 | 1586540 | 1585658 | ID=MS.gene009349.t1.exon1;Parent=MS.gene009349.t1 |
chr3.2 | CDS | 1585658 | 1586540 | 1585658 | ID=cds.MS.gene009349.t1;Parent=MS.gene009349.t1 |
chr3.2 | exon | 1586975 | 1588408 | 1586975 | ID=MS.gene009349.t1.exon2;Parent=MS.gene009349.t1 |
chr3.2 | CDS | 1586975 | 1588408 | 1586975 | ID=cds.MS.gene009349.t1;Parent=MS.gene009349.t1 |
chr3.2 | exon | 1588958 | 1588977 | 1588958 | ID=MS.gene009349.t1.exon3;Parent=MS.gene009349.t1 |
chr3.2 | CDS | 1588958 | 1588977 | 1588958 | ID=cds.MS.gene009349.t1;Parent=MS.gene009349.t1 |
Gene Sequence |
Protein sequence |