Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009482.t1 | XP_024633556.1 | 94 | 201 | 12 | 0 | 25 | 225 | 34 | 234 | 3.80E-100 | 374.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009482.t1 | Q9LTT3 | 50.0 | 186 | 77 | 3 | 25 | 208 | 34 | 205 | 1.2e-41 | 171.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009482.t1 | I3SK14 | 94.0 | 201 | 12 | 0 | 25 | 225 | 34 | 234 | 4.6e-100 | 373.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene009482.t1 | TR | ARID |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009482.t1 | MTR_3g009890 | 94.416 | 197 | 11 | 0 | 17 | 213 | 26 | 222 | 1.03e-134 | 380 |
| MS.gene009482.t1 | MTR_3g114920 | 45.000 | 220 | 113 | 3 | 1 | 215 | 1 | 217 | 1.79e-54 | 177 |
| MS.gene009482.t1 | MTR_1g116180 | 46.667 | 210 | 94 | 5 | 12 | 205 | 15 | 222 | 5.16e-52 | 171 |
| MS.gene009482.t1 | MTR_1g116180 | 46.667 | 210 | 94 | 5 | 12 | 205 | 15 | 222 | 5.27e-51 | 171 |
| MS.gene009482.t1 | MTR_7g005970 | 45.455 | 209 | 101 | 4 | 6 | 201 | 9 | 217 | 5.95e-50 | 169 |
| MS.gene009482.t1 | MTR_2g084375 | 83.871 | 62 | 10 | 0 | 159 | 220 | 201 | 262 | 1.60e-25 | 100 |
| MS.gene009482.t1 | MTR_2g084410 | 83.871 | 62 | 10 | 0 | 159 | 220 | 215 | 276 | 1.69e-25 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009482.t1 | AT3G13350 | 50.000 | 186 | 77 | 3 | 25 | 208 | 34 | 205 | 3.01e-52 | 171 |
| MS.gene009482.t1 | AT1G55650 | 46.277 | 188 | 81 | 4 | 26 | 209 | 29 | 200 | 2.60e-51 | 169 |
| MS.gene009482.t1 | AT1G04880 | 44.103 | 195 | 101 | 3 | 16 | 202 | 14 | 208 | 9.09e-48 | 163 |
| MS.gene009482.t1 | AT1G76110 | 47.027 | 185 | 91 | 4 | 21 | 201 | 28 | 209 | 1.90e-45 | 154 |
Find 61 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGTGATGCTAACCTCTTC+TGG | 0.176030 | 3.2:-3843616 | MS.gene009482:CDS |
| GGAGCAATTAGTAGGAAAAT+TGG | 0.205100 | 3.2:-3840806 | MS.gene009482:CDS |
| GTTCAGTCTCACGCGGATTT+TGG | 0.242316 | 3.2:+3843684 | None:intergenic |
| TGTTTCAAGCAATGCATCTA+AGG | 0.259440 | 3.2:-3840984 | MS.gene009482:CDS |
| TATCAATGATTCACCTGTTC+AGG | 0.286987 | 3.2:-3842183 | MS.gene009482:CDS |
| AGGTAATTGTAGATCGTAAA+TGG | 0.317695 | 3.2:-3842481 | MS.gene009482:CDS |
| TGTGTAGGATTCCTACTATA+GGG | 0.338046 | 3.2:-3842792 | MS.gene009482:intron |
| AGTGTCTGTGCTGGACTAAT+TGG | 0.354657 | 3.2:+3841106 | None:intergenic |
| GAGCAATTAGTAGGAAAATT+GGG | 0.369568 | 3.2:-3840805 | MS.gene009482:CDS |
| CATAACAAGCGCATCATTCA+TGG | 0.386953 | 3.2:-3842423 | MS.gene009482:CDS |
| CGTATTGGTTGTGAAGCTAT+TGG | 0.406695 | 3.2:+3842217 | None:intergenic |
| TTCATTGACTTACCCTGAAC+AGG | 0.413930 | 3.2:+3842170 | None:intergenic |
| TTGTGTAGGATTCCTACTAT+AGG | 0.432421 | 3.2:-3842793 | MS.gene009482:intron |
| GTGATAAAGCAACGATAGAT+AGG | 0.439414 | 3.2:+3842391 | None:intergenic |
| TCGTGATGCTAACCTCTTCT+GGG | 0.445073 | 3.2:-3843615 | MS.gene009482:CDS |
| CATGAATGATGCGCTTGTTA+TGG | 0.445119 | 3.2:+3842424 | None:intergenic |
| GAGTAGAGAGCGGTTGGAGG+AGG | 0.454942 | 3.2:+3843647 | None:intergenic |
| TCTAAGGGTTCTTCTATTGA+AGG | 0.459768 | 3.2:-3840968 | MS.gene009482:intron |
| ACAATTGACATGAAATTTGA+TGG | 0.468681 | 3.2:-3841064 | MS.gene009482:CDS |
| ATATATAGTTACGGTGGACC+TGG | 0.474943 | 3.2:-3841038 | MS.gene009482:CDS |
| GATAGCAGCACCGTCCGTAT+TGG | 0.475279 | 3.2:+3842202 | None:intergenic |
| ATCTCGTGGTGGTATTGAAA+AGG | 0.485522 | 3.2:-3842728 | MS.gene009482:intron |
| CTTCACTAACCAGGTGTTGA+GGG | 0.490947 | 3.2:+3842332 | None:intergenic |
| CTCTATCCAGATGCTTTGAG+TGG | 0.513745 | 3.2:-3842248 | MS.gene009482:intron |
| ATCAATGATTCACCTGTTCA+GGG | 0.519797 | 3.2:-3842182 | MS.gene009482:intron |
| TTCCTACTAATTGCTCCTTG+TGG | 0.533197 | 3.2:+3840812 | None:intergenic |
| AGGTCAGAGTAGAGAGCGGT+TGG | 0.533695 | 3.2:+3843641 | None:intergenic |
| TCAGAGTAGAGAGCGGTTGG+AGG | 0.537076 | 3.2:+3843644 | None:intergenic |
| GGAAAATTGGGTTTGCGTGG+AGG | 0.541228 | 3.2:-3840793 | MS.gene009482:CDS |
| CAATAGCTTCACAACCAATA+CGG | 0.543956 | 3.2:-3842216 | MS.gene009482:CDS |
| TGATGGCGGATATATAGTTA+CGG | 0.545231 | 3.2:-3841047 | MS.gene009482:CDS |
| CAAGTCCCTCCCTCAACACC+TGG | 0.550783 | 3.2:-3842341 | MS.gene009482:intron |
| ATTAGTCCAGCACAGACACT+TGG | 0.556813 | 3.2:-3841103 | MS.gene009482:CDS |
| GGCCACAAGGAGCAATTAGT+AGG | 0.560286 | 3.2:-3840814 | MS.gene009482:CDS |
| GAAGAACCAAGTGTCTGTGC+TGG | 0.560864 | 3.2:+3841097 | None:intergenic |
| ATGCGCTTGTTATGGTATCT+CGG | 0.562285 | 3.2:+3842432 | None:intergenic |
| CTTCAACGAAGAGGTGATGC+AGG | 0.562980 | 3.2:+3842755 | None:intergenic |
| GTTTCAAGCAATGCATCTAA+GGG | 0.563003 | 3.2:-3840983 | MS.gene009482:CDS |
| GTGTAGGATTCCTACTATAG+GGG | 0.574437 | 3.2:-3842791 | MS.gene009482:intron |
| TTCGTTGAAGTAACATCTCG+TGG | 0.581244 | 3.2:-3842742 | MS.gene009482:CDS |
| TCTTCACTAACCAGGTGTTG+AGG | 0.585501 | 3.2:+3842331 | None:intergenic |
| CTGGGTTCTGAACAGCTGAA+AGG | 0.586271 | 3.2:-3841019 | MS.gene009482:CDS |
| GTAGGAAAATTGGGTTTGCG+TGG | 0.592801 | 3.2:-3840796 | MS.gene009482:CDS |
| GAGCGGTTGGAGGAGGACAA+AGG | 0.594063 | 3.2:+3843654 | None:intergenic |
| CACTAACCAGGTGTTGAGGG+AGG | 0.596662 | 3.2:+3842335 | None:intergenic |
| AATTGTAGATCGTAAATGGA+AGG | 0.598698 | 3.2:-3842477 | MS.gene009482:CDS |
| AAGAGGTGATGCAGGTCTAG+TGG | 0.600590 | 3.2:+3842763 | None:intergenic |
| ACACTTGGTTCTTCAGTGCG+TGG | 0.611516 | 3.2:-3841088 | MS.gene009482:CDS |
| TGTAGATCGTAAATGGAAGG+AGG | 0.611934 | 3.2:-3842474 | MS.gene009482:CDS |
| AGAGGTTAGCATCACGAACA+AGG | 0.617590 | 3.2:+3843621 | None:intergenic |
| ACTAACCAGGTGTTGAGGGA+GGG | 0.618972 | 3.2:+3842336 | None:intergenic |
| TATATAGTTACGGTGGACCT+GGG | 0.620088 | 3.2:-3841037 | MS.gene009482:CDS |
| CTTTCAGCTGTTCAGAACCC+AGG | 0.626176 | 3.2:+3841020 | None:intergenic |
| AGCTTCACAACCAATACGGA+CGG | 0.629115 | 3.2:-3842212 | MS.gene009482:CDS |
| TGTAGGATTCCTACTATAGG+GGG | 0.629514 | 3.2:-3842790 | MS.gene009482:intron |
| ATTGACATGAAATTTGATGG+CGG | 0.676313 | 3.2:-3841061 | MS.gene009482:CDS |
| AACAAGGTCAGAGTAGAGAG+CGG | 0.693390 | 3.2:+3843637 | None:intergenic |
| GAGATGTTACTTCAACGAAG+AGG | 0.709606 | 3.2:+3842746 | None:intergenic |
| TGGCGGATATATAGTTACGG+TGG | 0.725652 | 3.2:-3841044 | MS.gene009482:CDS |
| TTTGTGAGTTCAGTCTCACG+CGG | 0.743764 | 3.2:+3843677 | None:intergenic |
| GTTGAAGTAACATCTCGTGG+TGG | 0.754811 | 3.2:-3842739 | MS.gene009482:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTAAAAATTGTATTTTAT+TGG | - | chr3.2:3841196-3841215 | MS.gene009482:intron | 10.0% |
| !! | AAATTTAAGAAAAAGATTAG+AGG | + | chr3.2:3841988-3842007 | None:intergenic | 15.0% |
| !!! | ATGATTTGTTTCTTTAATTT+AGG | - | chr3.2:3842880-3842899 | MS.gene009482:intron | 15.0% |
| !!! | TCTTTTTCTTAAATTTATGT+AGG | - | chr3.2:3841992-3842011 | MS.gene009482:intron | 15.0% |
| !!! | TTTTATGCACAAAAAAATAT+AGG | - | chr3.2:3841358-3841377 | MS.gene009482:intron | 15.0% |
| !!! | TTTTATTGGATAGTATAATA+TGG | - | chr3.2:3841210-3841229 | MS.gene009482:intron | 15.0% |
| !! | AGGATTTATCTTAATGAATT+AGG | - | chr3.2:3841537-3841556 | MS.gene009482:intron | 20.0% |
| !! | GAAAATCTTGAATTATTGTT+CGG | + | chr3.2:3841403-3841422 | None:intergenic | 20.0% |
| !! | TACACAAAGCTAAAAAAAAA+TGG | + | chr3.2:3842911-3842930 | None:intergenic | 20.0% |
| !! | TATGACAAAAGAAATATGAT+TGG | - | chr3.2:3841436-3841455 | MS.gene009482:intron | 20.0% |
| !!! | AATCATGATTTGTTAAGAAT+GGG | + | chr3.2:3841240-3841259 | None:intergenic | 20.0% |
| !!! | AATTTTCAAAACGTAATTAG+AGG | + | chr3.2:3842200-3842219 | None:intergenic | 20.0% |
| !!! | ATTTTCAAAACGTAATTAGA+GGG | + | chr3.2:3842199-3842218 | None:intergenic | 20.0% |
| !!! | TCTTTTTCTATGTTTTTATG+TGG | - | chr3.2:3842555-3842574 | MS.gene009482:intron | 20.0% |
| ! | ACAATTGACATGAAATTTGA+TGG | - | chr3.2:3843429-3843448 | MS.gene009482:intron | 25.0% |
| ! | AGAAACAAATCATCTAAGAA+TGG | + | chr3.2:3842873-3842892 | None:intergenic | 25.0% |
| ! | ATATACTTTCCATTTATCTG+TGG | - | chr3.2:3843334-3843353 | MS.gene009482:intron | 25.0% |
| ! | ATTTGATTCAGATTGTGAAT+CGG | - | chr3.2:3841263-3841282 | MS.gene009482:intron | 25.0% |
| ! | GAAAACACATAAGAAAGTAA+AGG | + | chr3.2:3841858-3841877 | None:intergenic | 25.0% |
| ! | GCAGAAAAAACACTAAAAAA+TGG | + | chr3.2:3841039-3841058 | None:intergenic | 25.0% |
| !! | AATTAGTAGAGAAGTATACA+AGG | + | chr3.2:3841795-3841814 | None:intergenic | 25.0% |
| !! | ATTAAAACAGCTTTTCAGTT+TGG | - | chr3.2:3841894-3841913 | MS.gene009482:intron | 25.0% |
| !!! | ATTCTTAGTTTTCGATTTTG+TGG | - | chr3.2:3841061-3841080 | MS.gene009482:CDS | 25.0% |
| !!! | GAATCATGATTTGTTAAGAA+TGG | + | chr3.2:3841241-3841260 | None:intergenic | 25.0% |
| !!! | TGCTTCTTTTATTTTGAAAC+TGG | - | chr3.2:3842829-3842848 | MS.gene009482:intron | 25.0% |
| !!! | TTCTTAGTTTTCGATTTTGT+GGG | - | chr3.2:3841062-3841081 | MS.gene009482:CDS | 25.0% |
| AAAACGTAATTAGAGGGAAA+AGG | + | chr3.2:3842193-3842212 | None:intergenic | 30.0% | |
| AAACCTTTACCACAGATAAA+TGG | + | chr3.2:3843346-3843365 | None:intergenic | 30.0% | |
| AAGGGCAAAACATTATTATG+AGG | + | chr3.2:3841675-3841694 | None:intergenic | 30.0% | |
| AATTGTAGATCGTAAATGGA+AGG | - | chr3.2:3842016-3842035 | MS.gene009482:intron | 30.0% | |
| AGGGCAAAACATTATTATGA+GGG | + | chr3.2:3841674-3841693 | None:intergenic | 30.0% | |
| AGGTAATTGTAGATCGTAAA+TGG | - | chr3.2:3842012-3842031 | MS.gene009482:intron | 30.0% | |
| ATTGACATGAAATTTGATGG+CGG | - | chr3.2:3843432-3843451 | MS.gene009482:intron | 30.0% | |
| CTACTATTGTAAGAAGTTAG+AGG | + | chr3.2:3842424-3842443 | None:intergenic | 30.0% | |
| CTTTGTGTACATCTAATCTA+TGG | - | chr3.2:3842922-3842941 | MS.gene009482:intron | 30.0% | |
| GAGCAATTAGTAGGAAAATT+GGG | - | chr3.2:3843688-3843707 | MS.gene009482:CDS | 30.0% | |
| GGATGTATAGTCAGTATTAT+TGG | + | chr3.2:3842700-3842719 | None:intergenic | 30.0% | |
| TATATCGACCGAAATCAAAT+AGG | - | chr3.2:3843597-3843616 | MS.gene009482:CDS | 30.0% | |
| TGAATCCAGATTCATTAAGA+TGG | + | chr3.2:3841504-3841523 | None:intergenic | 30.0% | |
| TGCTGTTATCTGAATGAATT+AGG | - | chr3.2:3841476-3841495 | MS.gene009482:intron | 30.0% | |
| TTATGTGAAACCATGAATGA+TGG | + | chr3.2:3842721-3842740 | None:intergenic | 30.0% | |
| TTTCCATTTATCTGTGGTAA+AGG | - | chr3.2:3843340-3843359 | MS.gene009482:intron | 30.0% | |
| ! | TAACCACTCCTATTTGATTT+CGG | + | chr3.2:3843608-3843627 | None:intergenic | 30.0% |
| ! | TGATTGGCTACAAAAAGTTT+AGG | - | chr3.2:3841452-3841471 | MS.gene009482:intron | 30.0% |
| !! | AGCTATTAGCTGTTTTCATT+AGG | + | chr3.2:3843172-3843191 | None:intergenic | 30.0% |
| !! | CTATGTTTTTATGTGGTGTT+TGG | - | chr3.2:3842562-3842581 | MS.gene009482:intron | 30.0% |
| !!! | TGAATCGGAAACCTATTTTT+TGG | - | chr3.2:3841278-3841297 | MS.gene009482:intron | 30.0% |
| AACAAGCTGTGGTACAAAAA+GGG | + | chr3.2:3840984-3841003 | None:intergenic | 35.0% | |
| AACAGAGTCCTAATCTATGT+TGG | - | chr3.2:3843304-3843323 | MS.gene009482:intron | 35.0% | |
| AATAGTAGTAGCAGAGATAG+GGG | - | chr3.2:3842436-3842455 | MS.gene009482:CDS | 35.0% | |
| ACAATAGTAGTAGCAGAGAT+AGG | - | chr3.2:3842434-3842453 | MS.gene009482:CDS | 35.0% | |
| ACATAGATTAGGACTCTGTT+TGG | + | chr3.2:3843304-3843323 | None:intergenic | 35.0% | |
| AGGATCCATCTTAATGAATC+TGG | - | chr3.2:3841496-3841515 | MS.gene009482:intron | 35.0% | |
| AGGATTCATCTTCATGAATC+TGG | - | chr3.2:3841557-3841576 | MS.gene009482:intron | 35.0% | |
| ATCAATGATTCACCTGTTCA+GGG | - | chr3.2:3842311-3842330 | MS.gene009482:intron | 35.0% | |
| ATGTAACCTGTTAGCTCATT+CGG | + | chr3.2:3842632-3842651 | None:intergenic | 35.0% | |
| ATTTACTGCCATAAGCACAT+AGG | - | chr3.2:3843055-3843074 | MS.gene009482:intron | 35.0% | |
| CAATAGCTTCACAACCAATA+CGG | - | chr3.2:3842277-3842296 | MS.gene009482:intron | 35.0% | |
| CAATAGTAGTAGCAGAGATA+GGG | - | chr3.2:3842435-3842454 | MS.gene009482:CDS | 35.0% | |
| CACATAGTGTGATAAAGCTT+TGG | - | chr3.2:3843014-3843033 | MS.gene009482:intron | 35.0% | |
| CATGTATGTTTCATGAGACA+AGG | + | chr3.2:3841832-3841851 | None:intergenic | 35.0% | |
| CGATTCACAGTCCAAAAAAT+AGG | + | chr3.2:3841292-3841311 | None:intergenic | 35.0% | |
| GAATCCTACACAAACACAAA+GGG | + | chr3.2:3841693-3841712 | None:intergenic | 35.0% | |
| GACTATACATCCATCATTCA+TGG | - | chr3.2:3842708-3842727 | MS.gene009482:intron | 35.0% | |
| GGAGCAATTAGTAGGAAAAT+TGG | - | chr3.2:3843687-3843706 | MS.gene009482:CDS | 35.0% | |
| GGATAGAGGAAATTATTGAG+TGG | + | chr3.2:3842233-3842252 | None:intergenic | 35.0% | |
| GTGATAAAGCAACGATAGAT+AGG | + | chr3.2:3842105-3842124 | None:intergenic | 35.0% | |
| GTTTCAAGCAATGCATCTAA+GGG | - | chr3.2:3843510-3843529 | MS.gene009482:intron | 35.0% | |
| TAGGTATCTTGGAGAGTTTA+AGG | + | chr3.2:3843153-3843172 | None:intergenic | 35.0% | |
| TATCAATGATTCACCTGTTC+AGG | - | chr3.2:3842310-3842329 | MS.gene009482:intron | 35.0% | |
| TCCACTTACCAACATAGATT+AGG | + | chr3.2:3843315-3843334 | None:intergenic | 35.0% | |
| TCTAAGGGTTCTTCTATTGA+AGG | - | chr3.2:3843525-3843544 | MS.gene009482:intron | 35.0% | |
| TGTGTAGGATTCCTACTATA+GGG | - | chr3.2:3841701-3841720 | MS.gene009482:intron | 35.0% | |
| TGTTTCAAGCAATGCATCTA+AGG | - | chr3.2:3843509-3843528 | MS.gene009482:intron | 35.0% | |
| TTGTGTAGGATTCCTACTAT+AGG | - | chr3.2:3841700-3841719 | MS.gene009482:intron | 35.0% | |
| TTTACTGCCATAAGCACATA+GGG | - | chr3.2:3843056-3843075 | MS.gene009482:intron | 35.0% | |
| ! | AAGCTTTATCACACTATGTG+AGG | + | chr3.2:3843014-3843033 | None:intergenic | 35.0% |
| ! | ACATGTGATTTGTGATGGAA+TGG | - | chr3.2:3842527-3842546 | MS.gene009482:intron | 35.0% |
| ! | AGTTTTCGATTTTGTGGGTT+AGG | - | chr3.2:3841067-3841086 | MS.gene009482:CDS | 35.0% |
| ! | ATTGAAGTTTTTCCCAGAAG+AGG | + | chr3.2:3840893-3840912 | None:intergenic | 35.0% |
| ! | CAATCTTTTCATGATTCGCT+TGG | - | chr3.2:3840909-3840928 | MS.gene009482:intron | 35.0% |
| ! | TCCTAATCTATGTTGGTAAG+TGG | - | chr3.2:3843311-3843330 | MS.gene009482:intron | 35.0% |
| ! | TTTTTGCTGAGAATTATGCC+AGG | - | chr3.2:3843637-3843656 | MS.gene009482:CDS | 35.0% |
| !! | GCTGTTTTCATTAGGTATCT+TGG | + | chr3.2:3843164-3843183 | None:intergenic | 35.0% |
| !! | TCGGGTTATAGTCTTATTGT+CGG | + | chr3.2:3842613-3842632 | None:intergenic | 35.0% |
| !! | TGATGGCGGATATATAGTTA+CGG | - | chr3.2:3843446-3843465 | MS.gene009482:intron | 35.0% |
| AGGTAGTATCTTCACTAACC+AGG | + | chr3.2:3842173-3842192 | None:intergenic | 40.0% | |
| ATATATAGTTACGGTGGACC+TGG | - | chr3.2:3843455-3843474 | MS.gene009482:intron | 40.0% | |
| ATTCTCTCTAGCAGCAACTA+AGG | + | chr3.2:3841159-3841178 | None:intergenic | 40.0% | |
| CATAACAAGCGCATCATTCA+TGG | - | chr3.2:3842070-3842089 | MS.gene009482:intron | 40.0% | |
| GAACAAGCTGTGGTACAAAA+AGG | + | chr3.2:3840985-3841004 | None:intergenic | 40.0% | |
| GAATGAGCTAACAGGTTACA+TGG | - | chr3.2:3842631-3842650 | MS.gene009482:intron | 40.0% | |
| GGAATCCTACACAAACACAA+AGG | + | chr3.2:3841694-3841713 | None:intergenic | 40.0% | |
| GGATTCATGTCTTGTGAAAC+AGG | - | chr3.2:3841517-3841536 | MS.gene009482:intron | 40.0% | |
| GTGTAGGATTCCTACTATAG+GGG | - | chr3.2:3841702-3841721 | MS.gene009482:intron | 40.0% | |
| TATAACCCGAATGAGCTAAC+AGG | - | chr3.2:3842623-3842642 | MS.gene009482:intron | 40.0% | |
| TATATAGTTACGGTGGACCT+GGG | - | chr3.2:3843456-3843475 | MS.gene009482:intron | 40.0% | |
| TGATCCATGACAAATGTCAG+AGG | + | chr3.2:3842480-3842499 | None:intergenic | 40.0% | |
| TGTAACCTGTTAGCTCATTC+GGG | + | chr3.2:3842631-3842650 | None:intergenic | 40.0% | |
| TGTAGATCGTAAATGGAAGG+AGG | - | chr3.2:3842019-3842038 | MS.gene009482:intron | 40.0% | |
| TGTAGGATTCCTACTATAGG+GGG | - | chr3.2:3841703-3841722 | MS.gene009482:intron | 40.0% | |
| TGTTCCTCTGACATTTGTCA+TGG | - | chr3.2:3842473-3842492 | MS.gene009482:CDS | 40.0% | |
| TTACTGCCATAAGCACATAG+GGG | - | chr3.2:3843057-3843076 | MS.gene009482:intron | 40.0% | |
| TTCCTACTAATTGCTCCTTG+TGG | + | chr3.2:3843684-3843703 | None:intergenic | 40.0% | |
| TTCGTTGAAGTAACATCTCG+TGG | - | chr3.2:3841751-3841770 | MS.gene009482:intron | 40.0% | |
| TTGGGAGAGCTTATGGAAAT+TGG | - | chr3.2:3843085-3843104 | MS.gene009482:intron | 40.0% | |
| TTTGCCCTTTGTGTTTGTGT+AGG | - | chr3.2:3841686-3841705 | MS.gene009482:intron | 40.0% | |
| ! | ATCGCTGTGTGTAGCATTTT+TGG | + | chr3.2:3841591-3841610 | None:intergenic | 40.0% |
| ! | ATCTCGTGGTGGTATTGAAA+AGG | - | chr3.2:3841765-3841784 | MS.gene009482:intron | 40.0% |
| ! | CATGAATGATGCGCTTGTTA+TGG | + | chr3.2:3842072-3842091 | None:intergenic | 40.0% |
| ! | GAGATGTTACTTCAACGAAG+AGG | + | chr3.2:3841750-3841769 | None:intergenic | 40.0% |
| ! | GTGATTTGTGATGGAATGGT+TGG | - | chr3.2:3842531-3842550 | MS.gene009482:intron | 40.0% |
| !! | ATGCGCTTGTTATGGTATCT+CGG | + | chr3.2:3842064-3842083 | None:intergenic | 40.0% |
| !! | CGTATTGGTTGTGAAGCTAT+TGG | + | chr3.2:3842279-3842298 | None:intergenic | 40.0% |
| !! | TTCATTGACTTACCCTGAAC+AGG | + | chr3.2:3842326-3842345 | None:intergenic | 40.0% |
| !!! | GCGGATTTTGGTTTTGATTC+TGG | + | chr3.2:3840800-3840819 | None:intergenic | 40.0% |
| AACAAGGTCAGAGTAGAGAG+CGG | + | chr3.2:3840859-3840878 | None:intergenic | 45.0% | |
| AACAGTCCCCTATGTGCTTA+TGG | + | chr3.2:3843066-3843085 | None:intergenic | 45.0% | |
| AAGCACATAGGGGACTGTTT+GGG | - | chr3.2:3843067-3843086 | MS.gene009482:intron | 45.0% | |
| AGAGGTTAGCATCACGAACA+AGG | + | chr3.2:3840875-3840894 | None:intergenic | 45.0% | |
| AGCTTCACAACCAATACGGA+CGG | - | chr3.2:3842281-3842300 | MS.gene009482:intron | 45.0% | |
| AGTGTCTGTGCTGGACTAAT+TGG | + | chr3.2:3843390-3843409 | None:intergenic | 45.0% | |
| ATTAGTCCAGCACAGACACT+TGG | - | chr3.2:3843390-3843409 | MS.gene009482:intron | 45.0% | |
| CCAGCTACTTAGATCAAACG+AGG | + | chr3.2:3842991-3843010 | None:intergenic | 45.0% | |
| CCTCGTTTGATCTAAGTAGC+TGG | - | chr3.2:3842988-3843007 | MS.gene009482:intron | 45.0% | |
| CGACCGAAATCAAATAGGAG+TGG | - | chr3.2:3843602-3843621 | MS.gene009482:CDS | 45.0% | |
| CTAGATCGATGAACAAGCTG+TGG | + | chr3.2:3840995-3841014 | None:intergenic | 45.0% | |
| GTAGGAAAATTGGGTTTGCG+TGG | - | chr3.2:3843697-3843716 | MS.gene009482:CDS | 45.0% | |
| GTTGAAGTAACATCTCGTGG+TGG | - | chr3.2:3841754-3841773 | MS.gene009482:intron | 45.0% | |
| TAAGCACATAGGGGACTGTT+TGG | - | chr3.2:3843066-3843085 | MS.gene009482:intron | 45.0% | |
| TCGTGATGCTAACCTCTTCT+GGG | - | chr3.2:3840878-3840897 | MS.gene009482:intron | 45.0% | |
| TTCGTGATGCTAACCTCTTC+TGG | - | chr3.2:3840877-3840896 | MS.gene009482:intron | 45.0% | |
| TTTGTGAGTTCAGTCTCACG+CGG | + | chr3.2:3840819-3840838 | None:intergenic | 45.0% | |
| ! | ACGTTTCCACTCAAAGCATC+TGG | + | chr3.2:3842254-3842273 | None:intergenic | 45.0% |
| ! | CACTCAAAGCATCTGGATAG+AGG | + | chr3.2:3842247-3842266 | None:intergenic | 45.0% |
| ! | CGCTGACATGTGATTTGTGA+TGG | - | chr3.2:3842522-3842541 | MS.gene009482:intron | 45.0% |
| ! | CTCTATCCAGATGCTTTGAG+TGG | - | chr3.2:3842245-3842264 | MS.gene009482:intron | 45.0% |
| ! | TCTTCACTAACCAGGTGTTG+AGG | + | chr3.2:3842165-3842184 | None:intergenic | 45.0% |
| ! | TGGCGGATATATAGTTACGG+TGG | - | chr3.2:3843449-3843468 | MS.gene009482:intron | 45.0% |
| !! | CTTCACTAACCAGGTGTTGA+GGG | + | chr3.2:3842164-3842183 | None:intergenic | 45.0% |
| AAGAGGTGATGCAGGTCTAG+TGG | + | chr3.2:3841733-3841752 | None:intergenic | 50.0% | |
| AGTGGCTTACCCCCTATAGT+AGG | + | chr3.2:3841715-3841734 | None:intergenic | 50.0% | |
| CCTTGTGGCCTGCAAAATGA+GGG | + | chr3.2:3843669-3843688 | None:intergenic | 50.0% | |
| CTTCAACGAAGAGGTGATGC+AGG | + | chr3.2:3841741-3841760 | None:intergenic | 50.0% | |
| CTTTCAGCTGTTCAGAACCC+AGG | + | chr3.2:3843476-3843495 | None:intergenic | 50.0% | |
| GAAGAACCAAGTGTCTGTGC+TGG | + | chr3.2:3843399-3843418 | None:intergenic | 50.0% | |
| GGAAAATTGGGTTTGCGTGG+AGG | - | chr3.2:3843700-3843719 | MS.gene009482:CDS | 50.0% | |
| GGACTGTTTGGGAGAGCTTA+TGG | - | chr3.2:3843078-3843097 | MS.gene009482:intron | 50.0% | |
| GGCCACAAGGAGCAATTAGT+AGG | - | chr3.2:3843679-3843698 | MS.gene009482:CDS | 50.0% | |
| TCCTTGTGGCCTGCAAAATG+AGG | + | chr3.2:3843670-3843689 | None:intergenic | 50.0% | |
| ! | ACACTTGGTTCTTCAGTGCG+TGG | - | chr3.2:3843405-3843424 | MS.gene009482:intron | 50.0% |
| ! | GCAAAATGAGGGCTTTAGCC+TGG | + | chr3.2:3843658-3843677 | None:intergenic | 50.0% |
| ! | GGCTAAAGCCCTCATTTTGC+AGG | - | chr3.2:3843658-3843677 | MS.gene009482:CDS | 50.0% |
| ! | GTTCAGTCTCACGCGGATTT+TGG | + | chr3.2:3840812-3840831 | None:intergenic | 50.0% |
| !! | ACTAACCAGGTGTTGAGGGA+GGG | + | chr3.2:3842160-3842179 | None:intergenic | 50.0% |
| !! | CTGGGTTCTGAACAGCTGAA+AGG | - | chr3.2:3843474-3843493 | MS.gene009482:intron | 50.0% |
| AGGTCAGAGTAGAGAGCGGT+TGG | + | chr3.2:3840855-3840874 | None:intergenic | 55.0% | |
| GATAGCAGCACCGTCCGTAT+TGG | + | chr3.2:3842294-3842313 | None:intergenic | 55.0% | |
| TCAGAGTAGAGAGCGGTTGG+AGG | + | chr3.2:3840852-3840871 | None:intergenic | 55.0% | |
| ! | CCCTCATTTTGCAGGCCACA+AGG | - | chr3.2:3843666-3843685 | MS.gene009482:CDS | 55.0% |
| !! | CACTAACCAGGTGTTGAGGG+AGG | + | chr3.2:3842161-3842180 | None:intergenic | 55.0% |
| CAAGTCCCTCCCTCAACACC+TGG | - | chr3.2:3842152-3842171 | MS.gene009482:intron | 60.0% | |
| GAGCGGTTGGAGGAGGACAA+AGG | + | chr3.2:3840842-3840861 | None:intergenic | 60.0% | |
| GAGTAGAGAGCGGTTGGAGG+AGG | + | chr3.2:3840849-3840868 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 3840786 | 3843729 | 3840786 | ID=MS.gene009482 |
| chr3.2 | mRNA | 3840786 | 3843729 | 3840786 | ID=MS.gene009482.t1;Parent=MS.gene009482 |
| chr3.2 | exon | 3843572 | 3843729 | 3843572 | ID=MS.gene009482.t1.exon1;Parent=MS.gene009482.t1 |
| chr3.2 | CDS | 3843572 | 3843729 | 3843572 | ID=cds.MS.gene009482.t1;Parent=MS.gene009482.t1 |
| chr3.2 | exon | 3842729 | 3842807 | 3842729 | ID=MS.gene009482.t1.exon2;Parent=MS.gene009482.t1 |
| chr3.2 | CDS | 3842729 | 3842807 | 3842729 | ID=cds.MS.gene009482.t1;Parent=MS.gene009482.t1 |
| chr3.2 | exon | 3842342 | 3842501 | 3842342 | ID=MS.gene009482.t1.exon3;Parent=MS.gene009482.t1 |
| chr3.2 | CDS | 3842342 | 3842501 | 3842342 | ID=cds.MS.gene009482.t1;Parent=MS.gene009482.t1 |
| chr3.2 | exon | 3842183 | 3842260 | 3842183 | ID=MS.gene009482.t1.exon4;Parent=MS.gene009482.t1 |
| chr3.2 | CDS | 3842183 | 3842260 | 3842183 | ID=cds.MS.gene009482.t1;Parent=MS.gene009482.t1 |
| chr3.2 | exon | 3840969 | 3841133 | 3840969 | ID=MS.gene009482.t1.exon5;Parent=MS.gene009482.t1 |
| chr3.2 | CDS | 3840969 | 3841133 | 3840969 | ID=cds.MS.gene009482.t1;Parent=MS.gene009482.t1 |
| chr3.2 | exon | 3840786 | 3840835 | 3840786 | ID=MS.gene009482.t1.exon6;Parent=MS.gene009482.t1 |
| chr3.2 | CDS | 3840786 | 3840835 | 3840786 | ID=cds.MS.gene009482.t1;Parent=MS.gene009482.t1 |
| Gene Sequence |
| Protein sequence |
