AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene009667


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009667.t1 MTR_5g075390 98.635 293 4 0 1 293 66 358 0.0 593
MS.gene009667.t1 MTR_3g467120 70.336 327 61 6 1 293 53 377 6.44e-156 440
MS.gene009667.t1 MTR_3g094020 54.745 274 109 5 26 293 47 311 2.45e-88 266
MS.gene009667.t1 MTR_2g099050 55.140 214 52 5 24 193 107 320 9.45e-60 196
MS.gene009667.t1 MTR_6g034945 60.571 175 55 6 35 203 95 261 1.69e-53 177
MS.gene009667.t1 MTR_4g072090 73.684 114 30 0 79 192 345 458 7.24e-49 169
MS.gene009667.t1 MTR_4g072090 76.042 96 23 0 79 174 345 440 1.66e-40 146
MS.gene009667.t1 MTR_1g023690 56.944 144 52 2 59 192 342 485 1.53e-31 123
MS.gene009667.t1 MTR_2g090900 39.869 153 79 4 94 243 191 333 1.45e-21 93.2
MS.gene009667.t1 MTR_2g090900 50.538 93 46 0 94 186 191 283 2.00e-21 92.4
MS.gene009667.t1 MTR_4g079500 48.387 93 48 0 94 186 194 286 2.01e-20 89.7
MS.gene009667.t1 MTR_1g099030 41.818 110 62 2 79 187 109 217 6.94e-16 76.6
MS.gene009667.t1 MTR_8g088650 40.426 94 51 1 93 186 233 321 1.18e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009667.t1 AT2G40620 52.199 341 92 11 3 293 48 367 2.25e-90 273
MS.gene009667.t1 AT1G06850 57.249 269 88 7 29 282 70 326 3.24e-87 264
MS.gene009667.t1 AT2G31370 51.092 229 70 5 24 212 94 320 5.88e-62 201
MS.gene009667.t1 AT2G31370 51.092 229 70 5 24 212 94 320 2.18e-61 200
MS.gene009667.t1 AT2G31370 51.092 229 70 5 24 212 94 320 2.18e-61 200
MS.gene009667.t1 AT2G31370 51.092 229 70 5 24 212 94 320 2.18e-61 200
MS.gene009667.t1 AT2G31370 51.092 229 70 5 24 212 94 320 2.18e-61 200
MS.gene009667.t1 AT2G31370 51.092 229 70 5 24 212 94 320 2.18e-61 200
MS.gene009667.t1 AT2G31370 51.092 229 70 5 24 212 94 320 2.18e-61 200
MS.gene009667.t1 AT1G06070 52.358 212 67 4 24 202 108 318 1.04e-56 188
MS.gene009667.t1 AT4G38900 67.626 139 35 2 63 191 353 491 1.49e-49 172
MS.gene009667.t1 AT4G38900 67.626 139 35 2 63 191 353 491 1.49e-49 172
MS.gene009667.t1 AT1G43700 61.538 156 46 4 51 192 137 292 1.74e-48 165
MS.gene009667.t1 AT4G38900 64.828 145 35 3 63 191 353 497 5.41e-47 166
MS.gene009667.t1 AT2G21230 61.594 138 44 2 63 191 330 467 3.26e-43 155
MS.gene009667.t1 AT2G21230 61.594 138 44 2 63 191 330 467 3.26e-43 155
MS.gene009667.t1 AT1G06850 62.963 135 35 3 29 149 70 203 1.44e-42 146
MS.gene009667.t1 AT2G21230 64.706 119 36 1 79 191 355 473 3.95e-40 146
MS.gene009667.t1 AT2G21230 71.875 96 27 0 79 174 355 450 6.02e-37 137
MS.gene009667.t1 AT3G58120 49.462 93 47 0 94 186 202 294 1.12e-21 93.6
MS.gene009667.t1 AT2G42380 48.936 94 48 0 93 186 185 278 1.62e-21 92.8
MS.gene009667.t1 AT2G12900 43.269 104 58 1 86 189 109 211 4.38e-21 90.5
MS.gene009667.t1 AT2G13150 41.748 103 59 1 86 188 142 243 4.29e-18 82.4
MS.gene009667.t1 AT2G12940 39.423 104 62 1 85 188 140 242 1.51e-17 81.3
MS.gene009667.t1 AT2G42380 46.988 83 44 0 93 175 185 267 2.64e-17 80.1
MS.gene009667.t1 AT3G58120 47.500 80 42 0 94 173 202 281 2.47e-16 77.8
MS.gene009667.t1 AT2G42380 43.617 94 42 1 93 186 185 267 8.69e-15 73.6
MS.gene009667.t1 AT2G21235 34.722 144 62 3 94 205 359 502 1.11e-14 74.3
MS.gene009667.t1 AT1G58110 42.353 85 49 0 103 187 238 322 3.32e-12 66.6
MS.gene009667.t1 AT1G58110 42.353 85 49 0 103 187 238 322 3.32e-12 66.6

Find 81 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACATCCAGTTGCCACTATT+TGG 0.262115 5.3:-60191939 MS.gene009667:CDS
AGCTATGCCTCCTGATAAAT+TGG 0.296982 5.3:-60194738 MS.gene009667:CDS
GAGTTCGTTTGGGGAGATTA+TGG 0.335399 5.3:-60194771 MS.gene009667:CDS
TTCTGAATATGGATGAGAAT+TGG 0.348706 5.3:+60191875 None:intergenic
GTTGATGGGTCGAGTTCGTT+TGG 0.349009 5.3:-60194782 MS.gene009667:CDS
ATTCCACCACAAGGTCCTTC+TGG 0.351170 5.3:-60191969 MS.gene009667:CDS
TTGATGGGTCGAGTTCGTTT+GGG 0.357989 5.3:-60194781 MS.gene009667:CDS
GAAGGACCTTGTGGTGGAAT+TGG 0.359677 5.3:+60191972 None:intergenic
CAAAGCTCAGCCAATTTATC+AGG 0.368831 5.3:+60194728 None:intergenic
CTGATAAATTGGCTGAGCTT+TGG 0.380438 5.3:-60194727 MS.gene009667:CDS
TGGAGATGGTGGAGCAGATC+CGG 0.389694 5.3:-60194864 MS.gene009667:CDS
CGGCATAGTAATTCGGTTGA+TGG 0.408325 5.3:-60194797 MS.gene009667:CDS
TGATGAGATGGCATGCTAGA+TGG 0.419162 5.3:+60191909 None:intergenic
TTGATTCTGTAAATTGCATT+TGG 0.421076 5.3:+60192003 None:intergenic
ATAGTGGCAACTGGATGTTC+CGG 0.448057 5.3:+60191943 None:intergenic
GTTGATGATCCGCCGGTGAA+TGG 0.450476 5.3:+60194953 None:intergenic
GAAAGAAGTTGAGAGATTGA+AGG 0.452522 5.3:-60192078 MS.gene009667:CDS
GTCCCTGAAAACGACCAATC+TGG 0.466033 5.3:+60191838 None:intergenic
GAGGCATCGGCATAGTAATT+CGG 0.477726 5.3:-60194804 MS.gene009667:CDS
TGCAGAAAGAGAAGGATCTT+CGG 0.478143 5.3:+60191779 None:intergenic
TCGTTTGGGGAGATTATGGA+TGG 0.478452 5.3:-60194767 MS.gene009667:CDS
GTTGCTCCATGGCTTGCAGA+CGG 0.483654 5.3:+60192300 None:intergenic
AGTGACCAAATAGTGGCAAC+TGG 0.487180 5.3:+60191934 None:intergenic
AATATGGATGAGAATTGGTT+TGG 0.494880 5.3:+60191880 None:intergenic
GAGAGATTGAAGGTTGCTAC+TGG 0.498616 5.3:-60192068 MS.gene009667:CDS
TTATTGTAGCGAGACACAAC+AGG 0.501264 5.3:-60192353 MS.gene009667:intron
TGCCCAACTGACACTATACC+AGG 0.512274 5.3:-60192766 MS.gene009667:intron
TGCTCGTTCAAAAGAGAGAA+AGG 0.513956 5.3:-60192853 MS.gene009667:CDS
GAGTTGTAGCTTCAGTCTGT+AGG 0.522836 5.3:+60192793 None:intergenic
CACAAGGTCCTTCTGGTCAC+CGG 0.525022 5.3:-60191962 MS.gene009667:CDS
CGTCGAGAACAAGTCATCTT+CGG 0.525043 5.3:+60194907 None:intergenic
TTCTAGTTCATGTATATAGC+GGG 0.529677 5.3:+60192830 None:intergenic
ATCCTGTGAGGTCGAGGCAT+CGG 0.531863 5.3:-60194817 MS.gene009667:CDS
GCCGGTGAATGGATCGGAAG+GGG 0.535786 5.3:+60194964 None:intergenic
AGAAGAATCCTGTGAGGTCG+AGG 0.536454 5.3:-60194823 MS.gene009667:CDS
GATGGGGAGTGACCAAATAG+TGG 0.537737 5.3:+60191927 None:intergenic
TGAATGGATCGGAAGGGGAG+AGG 0.537969 5.3:+60194969 None:intergenic
TCCCCTTCCGATCCATTCAC+CGG 0.539027 5.3:-60194965 MS.gene009667:CDS
GAGATGTGCTTGTTGCTCCA+TGG 0.539738 5.3:+60192289 None:intergenic
TACATTGACATGGATAAGCT+TGG 0.540603 5.3:-60194884 MS.gene009667:CDS
AACCTGGTATAGTGTCAGTT+GGG 0.543208 5.3:+60192764 None:intergenic
GATGAGATGGCATGCTAGAT+GGG 0.545329 5.3:+60191910 None:intergenic
CCGCCGGTGAATGGATCGGA+AGG 0.545671 5.3:+60194962 None:intergenic
GGAGATGGTGGAGCAGATCC+GGG 0.548529 5.3:-60194863 MS.gene009667:CDS
TTATTACAAAATGACCAGAT+TGG 0.549243 5.3:-60191852 MS.gene009667:CDS
CTTTCACTTGCAGAAAGAGA+AGG 0.554279 5.3:+60191771 None:intergenic
AGTTGTAGCTTCAGTCTGTA+GGG 0.555319 5.3:+60192794 None:intergenic
AAACCTGGTATAGTGTCAGT+TGG 0.558403 5.3:+60192763 None:intergenic
TAAGCTCCGTCTGCAAGCCA+TGG 0.558627 5.3:-60192306 MS.gene009667:CDS
GGCATAGTAATTCGGTTGAT+GGG 0.562173 5.3:-60194796 MS.gene009667:CDS
GTTTGGTGCAGTTGATGAGA+TGG 0.569320 5.3:+60191897 None:intergenic
TTGATCCTAAGCGTGCCAAA+AGG 0.570345 5.3:-60194700 MS.gene009667:intron
TGCCGATGCCTCGACCTCAC+AGG 0.570868 5.3:+60194815 None:intergenic
TGATCCGCCGGTGAATGGAT+CGG 0.573063 5.3:+60194958 None:intergenic
ATGGATAAGCTTGGAGATGG+TGG 0.575379 5.3:-60194875 MS.gene009667:CDS
ACGGCGAGCCTCGATGAGAT+CGG 0.578645 5.3:-60194932 MS.gene009667:CDS
ATTCACCGGCGGATCATCAA+CGG 0.584726 5.3:-60194951 MS.gene009667:CDS
TCCGCCTCATCGTTTCCACC+CGG 0.585072 5.3:+60194845 None:intergenic
GGACTTGACATTAGTAGCAA+AGG 0.593896 5.3:-60191819 MS.gene009667:CDS
TGGATGTTCCGGTGACCAGA+AGG 0.596869 5.3:+60191954 None:intergenic
GCTCGCCGTTGATGATCCGC+CGG 0.602248 5.3:+60194946 None:intergenic
GTTCTAGTTCATGTATATAG+CGG 0.607918 5.3:+60192829 None:intergenic
CGTTTGGGGAGATTATGGAT+GGG 0.615032 5.3:-60194766 MS.gene009667:CDS
AGCTCAGCCAATTTATCAGG+AGG 0.617494 5.3:+60194731 None:intergenic
CAACAAGCACATCTCCGTGA+TGG 0.633902 5.3:-60192281 MS.gene009667:intron
TGATGGGTCGAGTTCGTTTG+GGG 0.634252 5.3:-60194780 MS.gene009667:CDS
TCCGGGTGGAAACGATGAGG+CGG 0.636862 5.3:-60194846 MS.gene009667:CDS
GGTGATAATTGTTACCATCA+CGG 0.643305 5.3:+60192267 None:intergenic
GACATGGATAAGCTTGGAGA+TGG 0.645716 5.3:-60194878 MS.gene009667:CDS
CGGTGACCAGAAGGACCTTG+TGG 0.645804 5.3:+60191963 None:intergenic
GTTCTCGACGTACATTGACA+TGG 0.649912 5.3:-60194894 MS.gene009667:CDS
CGCCGGTGAATGGATCGGAA+GGG 0.655187 5.3:+60194963 None:intergenic
TGACCAGAAGGACCTTGTGG+TGG 0.657394 5.3:+60191966 None:intergenic
CTTCGGATCCGATCTCATCG+AGG 0.668290 5.3:+60194924 None:intergenic
GATGGTGGAGCAGATCCGGG+TGG 0.680229 5.3:-60194860 MS.gene009667:CDS
TACGCTCCAATTCCACCACA+AGG 0.681715 5.3:-60191978 MS.gene009667:CDS
ATGAGATGGCATGCTAGATG+GGG 0.693250 5.3:+60191911 None:intergenic
AGATCCGGGTGGAAACGATG+AGG 0.696064 5.3:-60194849 MS.gene009667:CDS
CAAGATTAAAAGATTCAGTG+TGG 0.696933 5.3:+60192033 None:intergenic
CCTTCCGATCCATTCACCGG+CGG 0.698144 5.3:-60194962 MS.gene009667:CDS
AGGCGGAGAAGAATCCTGTG+AGG 0.742245 5.3:-60194829 MS.gene009667:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTTTTTTTTATTAGTTT+AGG - chr5.3:60192193-60192212 MS.gene009667:intron 10.0%
!!! GTTTTTTTTTTATTAGTTTA+GGG - chr5.3:60192194-60192213 MS.gene009667:intron 10.0%
!!! AATTTTTTTTATAGTGATGA+GGG - chr5.3:60193366-60193385 MS.gene009667:intron 15.0%
!!! ATCAACATCTAATATTTTTT+TGG + chr5.3:60192667-60192686 None:intergenic 15.0%
!!! TAATTTTTTTTATAGTGATG+AGG - chr5.3:60193365-60193384 MS.gene009667:intron 15.0%
!!! TCTAGAAGATTTTATATAAA+AGG + chr5.3:60194201-60194220 None:intergenic 15.0%
!!! TTTTGTAATAATTCTGAATA+TGG + chr5.3:60194871-60194890 None:intergenic 15.0%
!! AACCTAATTCTGTTTATAAT+TGG + chr5.3:60192868-60192887 None:intergenic 20.0%
!! AGTTAAAAAATTCAGCAATT+GGG + chr5.3:60193026-60193045 None:intergenic 20.0%
!! ATATGTGTTTGTGTATTTAT+TGG + chr5.3:60193580-60193599 None:intergenic 20.0%
!! TACTATACATATATTCACTT+CGG - chr5.3:60194225-60194244 MS.gene009667:intron 20.0%
!! TTATGCAAAAAGATTCTTAA+TGG + chr5.3:60193449-60193468 None:intergenic 20.0%
!! TTCCAATTATAAACAGAATT+AGG - chr5.3:60192863-60192882 MS.gene009667:CDS 20.0%
!!! AACTAAAAATGTTTTCTTCT+TGG + chr5.3:60192904-60192923 None:intergenic 20.0%
!!! AGAAGAAAACATTTTTAGTT+AGG - chr5.3:60192904-60192923 MS.gene009667:intron 20.0%
!!! AGTAACTTTGTTTTGTTTAT+TGG - chr5.3:60194042-60194061 MS.gene009667:intron 20.0%
!!! ATAATTTTGAAGCTCAAATA+TGG - chr5.3:60193502-60193521 MS.gene009667:intron 20.0%
!!! ATATATTTGTTAGTGTATCT+TGG - chr5.3:60193596-60193615 MS.gene009667:intron 20.0%
!!! ATTTTTTTTATAGTGATGAG+GGG - chr5.3:60193367-60193386 MS.gene009667:intron 20.0%
!!! CTTCTTAGATTTAAACTTTT+GGG - chr5.3:60193694-60193713 MS.gene009667:intron 20.0%
!!! GAAGAAAACATTTTTAGTTA+GGG - chr5.3:60192905-60192924 MS.gene009667:intron 20.0%
!!! GTTTTGTTTATTGGATTTAT+TGG - chr5.3:60194051-60194070 MS.gene009667:intron 20.0%
!!! TTCTTAGATTTAAACTTTTG+GGG - chr5.3:60193695-60193714 MS.gene009667:intron 20.0%
!!! TTTTAATAAGCTATCTTAGA+TGG - chr5.3:60192399-60192418 MS.gene009667:intron 20.0%
!!! TTTTTAACGTATTGTAAGAA+AGG + chr5.3:60194489-60194508 None:intergenic 20.0%
! ACAAATAATCAAGAAGTGAT+TGG + chr5.3:60194355-60194374 None:intergenic 25.0%
! CAAATAATCAAGAAGTGATT+GGG + chr5.3:60194354-60194373 None:intergenic 25.0%
! CAGTTAAAAAATTCAGCAAT+TGG + chr5.3:60193027-60193046 None:intergenic 25.0%
! GAAAAAGAATTGTTCAAAAC+AGG + chr5.3:60192575-60192594 None:intergenic 25.0%
! GCTTCAAAATTATATGTTGA+TGG + chr5.3:60193495-60193514 None:intergenic 25.0%
! GGAAAAACTTAAAACAATCA+CGG + chr5.3:60194304-60194323 None:intergenic 25.0%
! TTATTACAAAATGACCAGAT+TGG - chr5.3:60194880-60194899 MS.gene009667:CDS 25.0%
! TTCAATTGTACTAATTGTTG+TGG - chr5.3:60193788-60193807 MS.gene009667:intron 25.0%
! TTGAAGTTAATTAACTCAAC+TGG - chr5.3:60194558-60194577 MS.gene009667:intron 25.0%
! TTGATTCTGTAAATTGCATT+TGG + chr5.3:60194732-60194751 None:intergenic 25.0%
! TTGTACTTTATGATTAGAGA+TGG - chr5.3:60193423-60193442 MS.gene009667:intron 25.0%
! TTTCCTCATACTTAAATTTG+TGG - chr5.3:60194319-60194338 MS.gene009667:intron 25.0%
!! ACAATCTAGAATCACATAAT+AGG + chr5.3:60193288-60193307 None:intergenic 25.0%
!! CAATCTAGAATCACATAATA+GGG + chr5.3:60193287-60193306 None:intergenic 25.0%
!! CAATGATGAGTATTTTTCTA+TGG - chr5.3:60192131-60192150 MS.gene009667:intron 25.0%
!! GCTTCTTAGATTTAAACTTT+TGG - chr5.3:60193693-60193712 MS.gene009667:intron 25.0%
!! TCTTAGATTTAAACTTTTGG+GGG - chr5.3:60193696-60193715 MS.gene009667:intron 25.0%
!! TGTAGCTAAAAAATGACTTT+TGG - chr5.3:60194144-60194163 MS.gene009667:intron 25.0%
!!! AGTCATTTTTTAGCTACAAT+TGG + chr5.3:60194142-60194161 None:intergenic 25.0%
!!! GTCTTTTAATTAACTCAACT+GGG - chr5.3:60194590-60194609 MS.gene009667:intron 25.0%
!!! TGGTTTGAGTTTTTGTTAAT+TGG - chr5.3:60192151-60192170 MS.gene009667:intron 25.0%
!!! TGTCTTTTAATTAACTCAAC+TGG - chr5.3:60194589-60194608 MS.gene009667:intron 25.0%
!!! TTGTTTTGATAGTTTTTGTG+TGG - chr5.3:60193193-60193212 MS.gene009667:intron 25.0%
AATATGGATGAGAATTGGTT+TGG + chr5.3:60194855-60194874 None:intergenic 30.0%
ACAATTGGAACAAGGAAATA+TGG + chr5.3:60194127-60194146 None:intergenic 30.0%
ATATATTCACTTCGGTGATT+TGG - chr5.3:60194233-60194252 MS.gene009667:intron 30.0%
ATGCTAGATTTAAACAGTTG+AGG + chr5.3:60192779-60192798 None:intergenic 30.0%
ATTCGTAGAACTTACAAAGT+TGG + chr5.3:60193319-60193338 None:intergenic 30.0%
CAAGATTAAAAGATTCAGTG+TGG + chr5.3:60194702-60194721 None:intergenic 30.0%
GCTCAAATATGGAAAAACAT+TGG - chr5.3:60193513-60193532 MS.gene009667:intron 30.0%
GTTAAAATGAAGCGAAATTG+AGG - chr5.3:60192228-60192247 MS.gene009667:intron 30.0%
TAGCCACAAATTTAAGTATG+AGG + chr5.3:60194325-60194344 None:intergenic 30.0%
TATATTCACTTCGGTGATTT+GGG - chr5.3:60194234-60194253 MS.gene009667:intron 30.0%
TGCTAGATTTAAACAGTTGA+GGG + chr5.3:60192778-60192797 None:intergenic 30.0%
TTCTGAATATGGATGAGAAT+TGG + chr5.3:60194860-60194879 None:intergenic 30.0%
! AAAAACATTGGTGTTTGACT+TGG - chr5.3:60193525-60193544 MS.gene009667:intron 30.0%
! AAAATTACGAACGAACCTTT+TGG + chr5.3:60192050-60192069 None:intergenic 30.0%
! CACACTGAATCTTTTAATCT+TGG - chr5.3:60194700-60194719 MS.gene009667:intron 30.0%
! TAATTGATTTAGACCCTGTT+TGG + chr5.3:60192542-60192561 None:intergenic 30.0%
! TTCCAAGACCAATTTTACAT+GGG + chr5.3:60192837-60192856 None:intergenic 30.0%
! TTTCCAAGACCAATTTTACA+TGG + chr5.3:60192838-60192857 None:intergenic 30.0%
!! AATGTTGCTTTGTTTGTGAA+TGG - chr5.3:60194274-60194293 MS.gene009667:intron 30.0%
!! GTTCTAGTTCATGTATATAG+CGG + chr5.3:60193906-60193925 None:intergenic 30.0%
!! TAAGTTTTGTGAGACTATCT+AGG - chr5.3:60192325-60192344 MS.gene009667:CDS 30.0%
!! TTCAAGTTTTACTAACCTTC+CGG - chr5.3:60192592-60192611 MS.gene009667:intron 30.0%
!! TTCTAGTTCATGTATATAGC+GGG + chr5.3:60193905-60193924 None:intergenic 30.0%
!! TTTTAGCTACAATTGGAACA+AGG + chr5.3:60194135-60194154 None:intergenic 30.0%
!!! ACATTTTTAGTTAGGGAACT+AGG - chr5.3:60192912-60192931 MS.gene009667:intron 30.0%
AATAAGCTCCTTATCCAAAC+AGG - chr5.3:60192525-60192544 MS.gene009667:intron 35.0%
AGAAATAGGAGTGGTCAAAA+TGG + chr5.3:60192733-60192752 None:intergenic 35.0%
ATAAGCTCCTTATCCAAACA+GGG - chr5.3:60192526-60192545 MS.gene009667:intron 35.0%
ATTATTTGACTGGGATGAGT+TGG - chr5.3:60193243-60193262 MS.gene009667:intron 35.0%
ATTTAGACCCTGTTTGGATA+AGG + chr5.3:60192536-60192555 None:intergenic 35.0%
GAAAGAAGTTGAGAGATTGA+AGG - chr5.3:60194654-60194673 MS.gene009667:intron 35.0%
GATAAATGTCAACACAAACC+TGG + chr5.3:60193987-60194006 None:intergenic 35.0%
GGTGATAATTGTTACCATCA+CGG + chr5.3:60194468-60194487 None:intergenic 35.0%
GTAAGTTCTACGAATAACTG+AGG - chr5.3:60193324-60193343 MS.gene009667:intron 35.0%
TACATTGACATGGATAAGCT+TGG - chr5.3:60191848-60191867 MS.gene009667:CDS 35.0%
TCGTATCACCCATGTAAAAT+TGG - chr5.3:60192826-60192845 MS.gene009667:CDS 35.0%
TTTACTCCCATCACAGAAAT+AGG + chr5.3:60192747-60192766 None:intergenic 35.0%
!! AAGTTTGTTGTTTGTGCTTG+TGG - chr5.3:60193151-60193170 MS.gene009667:intron 35.0%
!! TAGATTTAAACTTTTGGGGG+TGG - chr5.3:60193699-60193718 MS.gene009667:intron 35.0%
!!! TTTTTTTGGCATTAACCCTC+CGG + chr5.3:60192653-60192672 None:intergenic 35.0%
AAACCTGGTATAGTGTCAGT+TGG + chr5.3:60193972-60193991 None:intergenic 40.0%
AACATCCAGTTGCCACTATT+TGG - chr5.3:60194793-60194812 MS.gene009667:CDS 40.0%
AACCTGGTATAGTGTCAGTT+GGG + chr5.3:60193971-60193990 None:intergenic 40.0%
ACTCGTCGCAATTATTTGAC+TGG - chr5.3:60193233-60193252 MS.gene009667:intron 40.0%
AGCTATGCCTCCTGATAAAT+TGG - chr5.3:60191994-60192013 MS.gene009667:CDS 40.0%
AGTTGTAGCTTCAGTCTGTA+GGG + chr5.3:60193941-60193960 None:intergenic 40.0%
CAAAGCTCAGCCAATTTATC+AGG + chr5.3:60192007-60192026 None:intergenic 40.0%
CACACTTCAAAAGTTTGAGC+AGG + chr5.3:60194535-60194554 None:intergenic 40.0%
CAGATGCATGACAGAATTAG+GGG + chr5.3:60192976-60192995 None:intergenic 40.0%
CCAGATGCATGACAGAATTA+GGG + chr5.3:60192977-60192996 None:intergenic 40.0%
CCATGTTGTTCTATGTAGCT+GGG - chr5.3:60193671-60193690 MS.gene009667:intron 40.0%
CTCGAGGAAAATGATGAACA+AGG + chr5.3:60194104-60194123 None:intergenic 40.0%
CTCGTCGCAATTATTTGACT+GGG - chr5.3:60193234-60193253 MS.gene009667:intron 40.0%
CTGATAAATTGGCTGAGCTT+TGG - chr5.3:60192005-60192024 MS.gene009667:CDS 40.0%
CTTTCACTTGCAGAAAGAGA+AGG + chr5.3:60194964-60194983 None:intergenic 40.0%
GGACTTGACATTAGTAGCAA+AGG - chr5.3:60194913-60194932 MS.gene009667:CDS 40.0%
GGCATAGTAATTCGGTTGAT+GGG - chr5.3:60191936-60191955 MS.gene009667:CDS 40.0%
TCCATGTTGTTCTATGTAGC+TGG - chr5.3:60193670-60193689 MS.gene009667:intron 40.0%
TGCAGAAAGAGAAGGATCTT+CGG + chr5.3:60194956-60194975 None:intergenic 40.0%
TGCTCGTTCAAAAGAGAGAA+AGG - chr5.3:60193879-60193898 MS.gene009667:intron 40.0%
TTATTGTAGCGAGACACAAC+AGG - chr5.3:60194379-60194398 MS.gene009667:intron 40.0%
! CACCCATGTAAAATTGGTCT+TGG - chr5.3:60192832-60192851 MS.gene009667:CDS 40.0%
!! ACCACTCCTATTTCTGTGAT+GGG - chr5.3:60192738-60192757 MS.gene009667:intron 40.0%
!! ATTTAAACTTTTGGGGGTGG+AGG - chr5.3:60193702-60193721 MS.gene009667:intron 40.0%
AACAGACCCTTAGCACAACT+CGG + chr5.3:60192287-60192306 None:intergenic 45.0%
AGCTCAGCCAATTTATCAGG+AGG + chr5.3:60192004-60192023 None:intergenic 45.0%
AGTGACCAAATAGTGGCAAC+TGG + chr5.3:60194801-60194820 None:intergenic 45.0%
AGTTGTGCTAAGGGTCTGTT+TGG - chr5.3:60192287-60192306 MS.gene009667:CDS 45.0%
ATAGTGGCAACTGGATGTTC+CGG + chr5.3:60194792-60194811 None:intergenic 45.0%
ATGAGATGGCATGCTAGATG+GGG + chr5.3:60194824-60194843 None:intergenic 45.0%
ATGGATAAGCTTGGAGATGG+TGG - chr5.3:60191857-60191876 MS.gene009667:CDS 45.0%
CCCAGCTACATAGAACAACA+TGG + chr5.3:60193674-60193693 None:intergenic 45.0%
CCCTAATTCTGTCATGCATC+TGG - chr5.3:60192974-60192993 MS.gene009667:intron 45.0%
CGGCATAGTAATTCGGTTGA+TGG - chr5.3:60191935-60191954 MS.gene009667:CDS 45.0%
CGTCGAGAACAAGTCATCTT+CGG + chr5.3:60191828-60191847 None:intergenic 45.0%
CGTTTGGGGAGATTATGGAT+GGG - chr5.3:60191966-60191985 MS.gene009667:CDS 45.0%
GAACAAGGAAATATGGCTCG+AGG + chr5.3:60194120-60194139 None:intergenic 45.0%
GACATGGATAAGCTTGGAGA+TGG - chr5.3:60191854-60191873 MS.gene009667:CDS 45.0%
GAGAGATTGAAGGTTGCTAC+TGG - chr5.3:60194664-60194683 MS.gene009667:intron 45.0%
GAGTTCGTTTGGGGAGATTA+TGG - chr5.3:60191961-60191980 MS.gene009667:CDS 45.0%
GAGTTGTAGCTTCAGTCTGT+AGG + chr5.3:60193942-60193961 None:intergenic 45.0%
GATGAGATGGCATGCTAGAT+GGG + chr5.3:60194825-60194844 None:intergenic 45.0%
GCATCTGGCTACATGTTCAA+TGG - chr5.3:60192989-60193008 MS.gene009667:intron 45.0%
GCCAGATGCATGACAGAATT+AGG + chr5.3:60192978-60192997 None:intergenic 45.0%
GTGGAGGATAATGTGAGAGT+GGG - chr5.3:60193718-60193737 MS.gene009667:intron 45.0%
GTTCTCGACGTACATTGACA+TGG - chr5.3:60191838-60191857 MS.gene009667:CDS 45.0%
TCCCATCACAGAAATAGGAG+TGG + chr5.3:60192742-60192761 None:intergenic 45.0%
TCGTTTGGGGAGATTATGGA+TGG - chr5.3:60191965-60191984 MS.gene009667:CDS 45.0%
TGATGAGATGGCATGCTAGA+TGG + chr5.3:60194826-60194845 None:intergenic 45.0%
TGGAGGATAATGTGAGAGTG+GGG - chr5.3:60193719-60193738 MS.gene009667:intron 45.0%
TTCTCTCCGAGTTGTGCTAA+GGG - chr5.3:60192278-60192297 MS.gene009667:intron 45.0%
TTGATCCTAAGCGTGCCAAA+AGG - chr5.3:60192032-60192051 MS.gene009667:CDS 45.0%
! GGGGAACTAGTTCTCAATGA+AGG + chr5.3:60192957-60192976 None:intergenic 45.0%
! TTGATGGGTCGAGTTCGTTT+GGG - chr5.3:60191951-60191970 MS.gene009667:CDS 45.0%
!! GACCACTCCTATTTCTGTGA+TGG - chr5.3:60192737-60192756 MS.gene009667:intron 45.0%
!! GACCAGATTGGTCGTTTTCA+GGG - chr5.3:60194892-60194911 MS.gene009667:CDS 45.0%
!! GAGGCATCGGCATAGTAATT+CGG - chr5.3:60191928-60191947 MS.gene009667:CDS 45.0%
!! GTTTGGTGCAGTTGATGAGA+TGG + chr5.3:60194838-60194857 None:intergenic 45.0%
!! TGACCAGATTGGTCGTTTTC+AGG - chr5.3:60194891-60194910 MS.gene009667:CDS 45.0%
!!! TTTTTTTTTTTATTAGTTTA+GGG - chr5.3:60193103-60193122 MS.gene009667:intron 5.0%
!!! TTTTTTTTTTTTATTAGTTT+AGG - chr5.3:60193102-60193121 MS.gene009667:intron 5.0%
AGAAGAATCCTGTGAGGTCG+AGG - chr5.3:60191909-60191928 MS.gene009667:CDS 50.0%
AGAGGCCTGTAATCCGGATT+CGG + chr5.3:60192618-60192637 None:intergenic 50.0%
ATTCACCGGCGGATCATCAA+CGG - chr5.3:60191781-60191800 MS.gene009667:CDS 50.0%
ATTCCACCACAAGGTCCTTC+TGG - chr5.3:60194763-60194782 MS.gene009667:CDS 50.0%
CAACAAGCACATCTCCGTGA+TGG - chr5.3:60194451-60194470 MS.gene009667:intron 50.0%
CTTAGCACAACTCGGAGAGA+AGG + chr5.3:60192279-60192298 None:intergenic 50.0%
CTTCTCTCCGAGTTGTGCTA+AGG - chr5.3:60192277-60192296 MS.gene009667:intron 50.0%
GATGGGGAGTGACCAAATAG+TGG + chr5.3:60194808-60194827 None:intergenic 50.0%
GGTGGAGGATAATGTGAGAG+TGG - chr5.3:60193717-60193736 MS.gene009667:intron 50.0%
GTCCCTGAAAACGACCAATC+TGG + chr5.3:60194897-60194916 None:intergenic 50.0%
GTGGTCAAAATGGCTGCTAG+TGG + chr5.3:60192723-60192742 None:intergenic 50.0%
TACGCTCCAATTCCACCACA+AGG - chr5.3:60194754-60194773 MS.gene009667:CDS 50.0%
TGCCCAACTGACACTATACC+AGG - chr5.3:60193966-60193985 MS.gene009667:intron 50.0%
! ACGAACCTTTTGGCACGCTT+AGG + chr5.3:60192040-60192059 None:intergenic 50.0%
! GAAGGACCTTGTGGTGGAAT+TGG + chr5.3:60194763-60194782 None:intergenic 50.0%
! GAGATGTGCTTGTTGCTCCA+TGG + chr5.3:60194446-60194465 None:intergenic 50.0%
! GTTGATGGGTCGAGTTCGTT+TGG - chr5.3:60191950-60191969 MS.gene009667:CDS 50.0%
! TGATGGGTCGAGTTCGTTTG+GGG - chr5.3:60191952-60191971 MS.gene009667:CDS 50.0%
ACTAACCTTCCGGCCGAATC+CGG - chr5.3:60192602-60192621 MS.gene009667:intron 55.0%
AGATCCGGGTGGAAACGATG+AGG - chr5.3:60191883-60191902 MS.gene009667:CDS 55.0%
AGGCGGAGAAGAATCCTGTG+AGG - chr5.3:60191903-60191922 MS.gene009667:CDS 55.0%
ATCCTGTGAGGTCGAGGCAT+CGG - chr5.3:60191915-60191934 MS.gene009667:CDS 55.0%
ATTAACCCTCCGGCTCTTGG+GGG + chr5.3:60192643-60192662 None:intergenic 55.0%
CACAAGGTCCTTCTGGTCAC+CGG - chr5.3:60194770-60194789 MS.gene009667:CDS 55.0%
CATTAACCCTCCGGCTCTTG+GGG + chr5.3:60192644-60192663 None:intergenic 55.0%
CTTCGGATCCGATCTCATCG+AGG + chr5.3:60191811-60191830 None:intergenic 55.0%
GCATTAACCCTCCGGCTCTT+GGG + chr5.3:60192645-60192664 None:intergenic 55.0%
GGGGAAAGAGGCCTGTAATC+CGG + chr5.3:60192624-60192643 None:intergenic 55.0%
TAAGCTCCGTCTGCAAGCCA+TGG - chr5.3:60194426-60194445 MS.gene009667:intron 55.0%
TCCCCTTCCGATCCATTCAC+CGG - chr5.3:60191767-60191786 MS.gene009667:CDS 55.0%
TGAATGGATCGGAAGGGGAG+AGG + chr5.3:60191766-60191785 None:intergenic 55.0%
TGACCAGAAGGACCTTGTGG+TGG + chr5.3:60194769-60194788 None:intergenic 55.0%
TGATCCGCCGGTGAATGGAT+CGG + chr5.3:60191777-60191796 None:intergenic 55.0%
TGGATGTTCCGGTGACCAGA+AGG + chr5.3:60194781-60194800 None:intergenic 55.0%
! GTTGCTCCATGGCTTGCAGA+CGG + chr5.3:60194435-60194454 None:intergenic 55.0%
!! GTTGATGATCCGCCGGTGAA+TGG + chr5.3:60191782-60191801 None:intergenic 55.0%
!! TGGAGATGGTGGAGCAGATC+CGG - chr5.3:60191868-60191887 MS.gene009667:CDS 55.0%
ACGGCGAGCCTCGATGAGAT+CGG - chr5.3:60191800-60191819 MS.gene009667:CDS 60.0%
CCTTCCGATCCATTCACCGG+CGG - chr5.3:60191770-60191789 MS.gene009667:CDS 60.0%
CGCCGGTGAATGGATCGGAA+GGG + chr5.3:60191772-60191791 None:intergenic 60.0%
CGGTGACCAGAAGGACCTTG+TGG + chr5.3:60194772-60194791 None:intergenic 60.0%
GCCGGTGAATGGATCGGAAG+GGG + chr5.3:60191771-60191790 None:intergenic 60.0%
GCCTGTAATCCGGATTCGGC+CGG + chr5.3:60192614-60192633 None:intergenic 60.0%
GGCATTAACCCTCCGGCTCT+TGG + chr5.3:60192646-60192665 None:intergenic 60.0%
GTAATCCGGATTCGGCCGGA+AGG + chr5.3:60192610-60192629 None:intergenic 60.0%
TCCGCCTCATCGTTTCCACC+CGG + chr5.3:60191890-60191909 None:intergenic 60.0%
TCCGGCCGAATCCGGATTAC+AGG - chr5.3:60192610-60192629 MS.gene009667:intron 60.0%
TCCGGGTGGAAACGATGAGG+CGG - chr5.3:60191886-60191905 MS.gene009667:CDS 60.0%
TCTTTCCCCCAAGAGCCGGA+GGG - chr5.3:60192635-60192654 MS.gene009667:intron 60.0%
!! GGAGATGGTGGAGCAGATCC+GGG - chr5.3:60191869-60191888 MS.gene009667:CDS 60.0%
CCGCCGGTGAATGGATCGGA+AGG + chr5.3:60191773-60191792 None:intergenic 65.0%
CTCCGGCTCTTGGGGGAAAG+AGG + chr5.3:60192636-60192655 None:intergenic 65.0%
CTCTTTCCCCCAAGAGCCGG+AGG - chr5.3:60192634-60192653 MS.gene009667:intron 65.0%
GGCCTCTTTCCCCCAAGAGC+CGG - chr5.3:60192631-60192650 MS.gene009667:intron 65.0%
TGCCGATGCCTCGACCTCAC+AGG + chr5.3:60191920-60191939 None:intergenic 65.0%
!! GATGGTGGAGCAGATCCGGG+TGG - chr5.3:60191872-60191891 MS.gene009667:CDS 65.0%
!! GCTCGCCGTTGATGATCCGC+CGG + chr5.3:60191789-60191808 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 60191755 60194999 60191755 ID=MS.gene009667
chr5.3 mRNA 60191755 60194999 60191755 ID=MS.gene009667.t1;Parent=MS.gene009667
chr5.3 exon 60194701 60194999 60194701 ID=MS.gene009667.t1.exon1;Parent=MS.gene009667.t1
chr5.3 CDS 60194701 60194999 60194701 ID=cds.MS.gene009667.t1;Parent=MS.gene009667.t1
chr5.3 exon 60192767 60192899 60192767 ID=MS.gene009667.t1.exon2;Parent=MS.gene009667.t1
chr5.3 CDS 60192767 60192899 60192767 ID=cds.MS.gene009667.t1;Parent=MS.gene009667.t1
chr5.3 exon 60192282 60192366 60192282 ID=MS.gene009667.t1.exon3;Parent=MS.gene009667.t1
chr5.3 CDS 60192282 60192366 60192282 ID=cds.MS.gene009667.t1;Parent=MS.gene009667.t1
chr5.3 exon 60191755 60192119 60191755 ID=MS.gene009667.t1.exon4;Parent=MS.gene009667.t1
chr5.3 CDS 60191755 60192119 60191755 ID=cds.MS.gene009667.t1;Parent=MS.gene009667.t1
Gene Sequence

>MS.gene009667

ATGATGGACCTCTCCCCTTCCGATCCATTCACCGGCGGATCATCAACGGCGAGCCTCGATGAGATCGGATCCGAAGATGACTTGTTCTCGACGTACATTGACATGGATAAGCTTGGAGATGGTGGAGCAGATCCGGGTGGAAACGATGAGGCGGAGAAGAATCCTGTGAGGTCGAGGCATCGGCATAGTAATTCGGTTGATGGGTCGAGTTCGTTTGGGGAGATTATGGATGGGAAGAAAGCTATGCCTCCTGATAAATTGGCTGAGCTTTGGTCTGTTGATCCTAAGCGTGCCAAAAGGTTCGTTCGTAATTTTGATCTGATCGCGAAATGAATCATTTTTTCTACTTCAATTGTGTGTAGATTAGTTAATTTTTCAATGATGAGTATTTTTCTATGGTTTGAGTTTTTGTTAATTGGTTTTCAAGTTCTAAATTGAAGTTTTTTTTTTATTAGTTTAGGGAATTTAAAATAGTTAAAATGAAGCGAAATTGAGGTTTGTTCTGTGTTCAATCTGTCGAACCTTCTCTCCGAGTTGTGCTAAGGGTCTGTTTGGATTGACTTACTTGAATAAGTTTTGTGAGACTATCTAGGAGAACTTATGAAAAGAGCTTATGACATTTTTCATGAGCTTTTTTCAGATTATTTTAATAAGCTATCTTAGATGGCTTATGAAAACAGCTTATATCATATACAAAAACAATTTAACTTTATTTTATCTTTTACTATTGATATAACTTATCATGATAAGAACTTGTGCTATAAGCTGCAAATAAGCTCCTTATCCAAACAGGGTCTAAATCAATTAGATGTTTTGTCCTGTTTTGAACAATTCTTTTTCAAGTTTTACTAACCTTCCGGCCGAATCCGGATTACAGGCCTCTTTCCCCCAAGAGCCGGAGGGTTAATGCCAAAAAAATATTAGATGTTGATTGACTAGTTTTCTTTCTAATGTGATATTCAAGTCCACTAGCAGCCATTTTGACCACTCCTATTTCTGTGATGGGAGTAAAACACTTAACCCTCAACTGTTTAAATCTAGCATGATAATCATCGACAGTTAGAGTGACTCTCGTATCACCCATGTAAAATTGGTCTTGGAAATTTCTTTCCAATTATAAACAGAATTAGGTTTTAACATTGAAAGCCAAGAAGAAAACATTTTTAGTTAGGGAACTAGGAAAAAGTTTCATTTTCAAGCCTTCATTGAGAACTAGTTCCCCTAATTCTGTCATGCATCTGGCTACATGTTCAATGGTTGATACTTTTCCCAATTGCTGAATTTTTTAACTGAGTGTTTTCTTCTGTTGAGTTTTTGTTGATTGATTTTGAAGTTCTAAGTTGATTTTTTTTTTTTTTTATTAGTTTAGGGTATTTAAAATAAATAAGTGAAATTTAAGTTTGTTGTTTGTGCTTGTGGTTTGAAATTTTCAGTTTAGTTGTTTTGATAGTTTTTGTGTGGATTATGTTTGTTTGAATACTCGTCGCAATTATTTGACTGGGATGAGTTGGTTGTTGTGTGCAAGTCAACCCTATTATGTGATTCTAGATTGTAAGTTCAACCAACTTTGTAAGTTCTACGAATAACTGAGGCATTGTATTTTTTTTTTTTAATTTTTTTTATAGTGATGAGGGGATGTGAAATTGTAATGATGTATCAATTGATAACTTGTACTTTATGATTAGAGATGGCCATTAAGAATCTTTTTGCATAAGCGCAAATCATTTGAATTTTGAGCCATCAACATATAATTTTGAAGCTCAAATATGGAAAAACATTGGTGTTTGACTTGGATACAATATTGATTCACTTCTGATATTTGCCAATAAATACACAAACACATATATTTGTTAGTGTATCTTGGTCGTATTGTATTTGATTTTTAAAGAAATTGTAGTATTTGTGTCATATCATATCCATGTTGTTCTATGTAGCTGGGCTTCTTAGATTTAAACTTTTGGGGGTGGAGGATAATGTGAGAGTGGGGTTTATGCAAGAGATACTAGCATTCTGCTCTCAAGTTTAATCTAATTTTCAATTGTACTAATTGTTGTGGATTTGTTTTGTTCATTCATCTCATTTTTCTGTTGTTATGAATAGAATACTTGCTAATCGACAATCTGCTGCTCGTTCAAAAGAGAGAAAGGCCCGCTATATACATGAACTAGAACGCAAAGTTCAGACCCTACAGACTGAAGCTACAACTCTTTCTGCCCAACTGACACTATACCAGGTTTGTGTTGACATTTATCTACAACGACTGCACTTTAAAAGTTCGATATTGCAGAGTAACTTTGTTTTGTTTATTGGATTTATTGGTGTAGCTTAGAGCAATAAATTTAACTGCCTTGTTCATCATTTTCCTCGAGCCATATTTCCTTGTTCCAATTGTAGCTAAAAAATGACTTTTGGAAGCATTCTATTTGTATTTCTCTCAGAAATTCCTTTTATATAAAATCTTCTAGATATTTACTATACATATATTCACTTCGGTGATTTGGGTTTCAGTGTTATAACATAATGTTGCTTTGTTTGTGAATGGTTCACCGTGATTGTTTTAAGTTTTTCCTCATACTTAAATTTGTGGCTAAATTGACCCAATCACTTCTTGATTATTTGTTTCTTTATTGTAGCGAGACACAACAGGTCTGAGTACTGAAAATACTGAGCTTAAGCTCCGTCTGCAAGCCATGGAGCAACAAGCACATCTCCGTGATGGTAACAATTATCACCTTTCTTACAATACGTTAAAAATTCTCACTTCATAACATTTTTTTCCTGCTCAAACTTTTGAAGTGTGTTATTGAAGTTAATTAACTCAACTGGATTTTATTTGTCTTTTAATTAACTCAACTGGGTTTTATTTGTCTTTTGCTGTAGCTCTTAATGATGCATTGAAGAAAGAAGTTGAGAGATTGAAGGTTGCTACTGGAGATATAATGAGCCACACTGAATCTTTTAATCTTGGTATGCACCAAATGCAATTTACAGAATCAAATTACGCTCCAATTCCACCACAAGGTCCTTCTGGTCACCGGAACATCCAGTTGCCACTATTTGGTCACTCCCCATCTAGCATGCCATCTCATCAACTGCACCAAACCAATTCTCATCCATATTCAGAATTATTACAAAATGACCAGATTGGTCGTTTTCAGGGACTTGACATTAGTAGCAAAGGAACAGCTGTTGTAAAGTCCGAAGATCCTTCTCTTTCTGCAAGTGAAAGTAGCACAACATTTTGA

Protein sequence

>MS.gene009667.t1

MMDLSPSDPFTGGSSTASLDEIGSEDDLFSTYIDMDKLGDGGADPGGNDEAEKNPVRSRHRHSNSVDGSSSFGEIMDGKKAMPPDKLAELWSVDPKRAKRILANRQSAARSKERKARYIHELERKVQTLQTEATTLSAQLTLYQRDTTGLSTENTELKLRLQAMEQQAHLRDALNDALKKEVERLKVATGDIMSHTESFNLGMHQMQFTESNYAPIPPQGPSGHRNIQLPLFGHSPSSMPSHQLHQTNSHPYSELLQNDQIGRFQGLDISSKGTAVVKSEDPSLSASESSTTF