AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene009748

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009748.t1 MTR_5g073620 50.704 213 66 8 2 200 651 838 1.39e-49 176
MS.gene009748.t1 MTR_5g073620 70.886 79 21 1 196 274 997 1073 6.17e-32 124
MS.gene009748.t1 MTR_5g073780 74.390 82 19 1 124 205 1 80 4.47e-35 126
MS.gene009748.t1 MTR_5g073780 77.143 70 16 0 205 274 159 228 4.54e-34 123
MS.gene009748.t1 MTR_5g067680 58.511 94 30 4 10 95 190 282 1.85e-26 106
MS.gene009748.t1 MTR_3g464010 64.062 64 23 0 207 270 606 669 3.54e-21 93.2
MS.gene009748.t1 MTR_5g093530 32.394 213 76 7 124 268 359 571 1.79e-19 88.2
MS.gene009748.t1 MTR_3g090860 50.000 72 34 1 24 93 134 205 3.19e-18 83.6
MS.gene009748.t1 MTR_8g099350 53.623 69 30 1 23 89 132 200 4.92e-18 83.2
MS.gene009748.t1 MTR_5g073920 50.000 72 35 1 205 275 595 666 8.29e-18 83.6
MS.gene009748.t1 MTR_5g074130 56.923 65 28 0 204 268 610 674 1.91e-16 79.3
MS.gene009748.t1 MTR_5g074130 39.252 107 48 3 124 220 439 538 4.43e-12 66.6
MS.gene009748.t1 MTR_8g027860 46.914 81 40 2 23 100 136 216 4.28e-16 77.4
MS.gene009748.t1 MTR_3g093830 43.421 76 39 2 24 97 128 201 8.77e-16 76.3
MS.gene009748.t1 MTR_2g075750 43.590 78 42 1 17 92 22 99 9.71e-16 73.9
MS.gene009748.t1 MTR_7g117200 51.515 66 30 1 24 87 119 184 9.97e-16 76.3
MS.gene009748.t1 MTR_5g067700 38.144 97 51 3 24 115 107 199 6.35e-15 72.8
MS.gene009748.t1 MTR_2g075610 45.714 70 36 1 17 84 23 92 1.14e-14 70.9
MS.gene009748.t1 MTR_4g127040 47.059 68 36 0 11 78 233 300 1.36e-14 72.8
MS.gene009748.t1 MTR_8g087000 37.778 90 47 1 13 93 67 156 2.44e-14 71.2
MS.gene009748.t1 MTR_8g087000 37.778 90 47 1 13 93 66 155 3.03e-14 70.9
MS.gene009748.t1 MTR_2g075680 51.613 62 28 1 24 83 149 210 4.67e-14 71.2
MS.gene009748.t1 MTR_5g016610 41.860 86 44 2 1 84 179 260 5.70e-14 70.5
MS.gene009748.t1 MTR_2g032030 38.750 80 46 1 2 78 243 322 5.98e-14 71.6
MS.gene009748.t1 MTR_1g009613 42.647 68 39 0 11 78 250 317 8.95e-14 70.9
MS.gene009748.t1 MTR_2g032030 38.750 80 46 1 2 78 243 322 9.63e-14 71.2
MS.gene009748.t1 MTR_4g094908 41.176 85 44 2 1 83 246 326 2.43e-13 69.3
MS.gene009748.t1 MTR_7g073430 41.892 74 40 2 17 88 116 188 4.36e-13 68.2
MS.gene009748.t1 MTR_8g098945 50.909 55 27 0 24 78 130 184 4.36e-13 68.2
MS.gene009748.t1 MTR_7g073380 45.161 62 32 1 23 82 123 184 4.75e-13 68.2
MS.gene009748.t1 MTR_1g070455 42.647 68 39 0 11 78 281 348 7.16e-13 68.2
MS.gene009748.t1 MTR_2g016770 47.368 57 30 0 22 78 34 90 8.03e-13 66.6
MS.gene009748.t1 MTR_2g016770 47.368 57 30 0 22 78 26 82 1.05e-12 65.9
MS.gene009748.t1 MTR_2g083870 47.761 67 33 1 22 88 79 143 1.31e-12 66.6
MS.gene009748.t1 MTR_2g075700 49.153 59 28 1 24 80 145 203 1.54e-12 67.0
MS.gene009748.t1 MTR_1g099600 49.091 55 28 0 24 78 186 240 1.81e-12 66.6
MS.gene009748.t1 MTR_2g075690 40.260 77 44 1 9 83 127 203 2.10e-12 66.2
MS.gene009748.t1 MTR_0002s1250 28.261 138 86 3 24 150 112 247 3.13e-12 65.5
MS.gene009748.t1 MTR_8g005750 46.667 60 30 1 24 81 104 163 3.21e-12 65.5
MS.gene009748.t1 MTR_8g032510 36.957 92 47 3 24 107 120 208 6.46e-12 64.7
MS.gene009748.t1 MTR_7g079010 43.836 73 38 2 24 94 142 213 6.55e-12 63.9
MS.gene009748.t1 MTR_7g109600 44.262 61 34 0 18 78 48 108 6.78e-12 64.7
MS.gene009748.t1 MTR_8g028565 50.000 56 28 0 24 79 156 211 8.25e-12 65.1
MS.gene009748.t1 MTR_7g100510 48.387 62 31 1 24 85 362 422 1.10e-11 65.1
MS.gene009748.t1 MTR_7g028415 48.214 56 28 1 24 79 94 148 1.48e-11 62.0
MS.gene009748.t1 MTR_7g028710 48.214 56 28 1 24 79 94 148 1.48e-11 62.0
MS.gene009748.t1 MTR_2g024350 45.614 57 31 0 22 78 7 63 1.87e-11 62.8
MS.gene009748.t1 MTR_3g108960 47.368 57 30 0 22 78 313 369 2.40e-11 63.9
MS.gene009748.t1 MTR_0117s0040 47.368 57 30 0 22 78 73 129 2.42e-11 62.8
MS.gene009748.t1 MTR_6g053200 29.221 154 93 4 18 156 326 478 2.75e-11 63.9
MS.gene009748.t1 MTR_3g095080 43.284 67 37 1 24 90 169 234 4.53e-11 62.0
MS.gene009748.t1 MTR_3g095080 43.284 67 37 1 24 90 145 210 4.90e-11 61.6
MS.gene009748.t1 MTR_2g045360 36.364 88 54 1 24 111 212 297 5.48e-11 62.8
MS.gene009748.t1 MTR_7g079040 49.091 55 28 0 24 78 155 209 6.21e-11 62.4
MS.gene009748.t1 MTR_4g082580 44.643 56 30 1 23 78 278 332 7.31e-11 62.4
MS.gene009748.t1 MTR_7g109800 45.614 57 30 1 23 79 145 200 9.40e-11 61.6
MS.gene009748.t1 MTR_7g080020 48.214 56 27 2 23 78 280 333 9.43e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009748.t1 AT4G11070 47.727 88 36 2 11 88 89 176 4.15e-20 87.8
MS.gene009748.t1 AT4G11070 47.727 88 36 2 11 88 121 208 5.91e-20 87.8
MS.gene009748.t1 AT3G56400 40.000 95 51 2 23 111 120 214 1.35e-18 84.0
MS.gene009748.t1 AT4G23810 35.714 140 64 5 11 126 138 275 1.90e-18 84.0
MS.gene009748.t1 AT2G40740 53.030 66 29 1 17 80 167 232 3.39e-18 82.8
MS.gene009748.t1 AT2G40740 53.030 66 29 1 17 80 176 241 4.49e-18 82.4
MS.gene009748.t1 AT2G46400 45.783 83 39 3 24 103 105 184 1.54e-16 78.2
MS.gene009748.t1 AT5G24110 38.655 119 46 5 11 115 93 198 1.84e-16 78.2
MS.gene009748.t1 AT5G52830 55.357 56 25 0 24 79 166 221 1.59e-14 73.2
MS.gene009748.t1 AT1G66560 31.405 121 70 3 9 124 97 209 1.33e-13 69.3
MS.gene009748.t1 AT2G34830 38.750 80 46 1 2 78 200 279 1.84e-13 70.1
MS.gene009748.t1 AT2G34830 38.750 80 46 1 2 78 191 270 1.95e-13 70.1
MS.gene009748.t1 AT1G66550 39.024 82 47 2 2 80 86 167 2.37e-13 68.6
MS.gene009748.t1 AT2G40750 44.444 63 33 1 21 81 150 212 2.48e-13 69.3
MS.gene009748.t1 AT1G66550 46.032 63 32 1 20 80 100 162 4.10e-13 67.8
MS.gene009748.t1 AT5G01900 47.541 61 30 1 24 82 111 171 7.24e-13 67.4
MS.gene009748.t1 AT2G23320 39.726 73 44 0 11 83 228 300 7.71e-13 67.8
MS.gene009748.t1 AT2G30590 42.647 68 39 0 11 78 301 368 8.80e-13 68.2
MS.gene009748.t1 AT1G30650 37.500 80 47 1 2 78 193 272 9.04e-13 68.2
MS.gene009748.t1 AT4G23550 36.275 102 59 2 11 112 130 225 1.52e-12 67.0
MS.gene009748.t1 AT5G22570 44.615 65 34 1 24 86 111 175 2.52e-12 66.2
MS.gene009748.t1 AT1G29280 47.368 57 30 0 22 78 73 129 2.78e-12 65.5
MS.gene009748.t1 AT1G66600 50.847 59 27 1 24 80 104 162 4.85e-12 64.7
MS.gene009748.t1 AT5G28650 41.176 68 40 0 11 78 250 317 5.60e-12 65.5
MS.gene009748.t1 AT4G31800 41.176 68 40 0 11 78 99 166 6.36e-12 64.3
MS.gene009748.t1 AT4G31800 41.176 68 40 0 11 78 164 231 6.70e-12 65.1
MS.gene009748.t1 AT2G37260 46.154 65 34 1 23 87 349 412 6.77e-12 65.5
MS.gene009748.t1 AT2G37260 46.154 65 34 1 23 87 269 332 7.87e-12 65.1
MS.gene009748.t1 AT2G37260 46.154 65 34 1 23 87 267 330 7.88e-12 65.1
MS.gene009748.t1 AT3G58710 47.368 57 30 0 22 78 70 126 8.34e-12 64.3
MS.gene009748.t1 AT3G58710 47.368 57 30 0 22 78 69 125 8.43e-12 64.3
MS.gene009748.t1 AT3G04670 38.961 77 47 0 2 78 241 317 1.04e-11 64.7
MS.gene009748.t1 AT4G01250 39.785 93 44 2 24 110 129 215 1.24e-11 64.3
MS.gene009748.t1 AT4G24240 42.254 71 39 1 17 85 273 343 1.27e-11 64.7
MS.gene009748.t1 AT1G64000 41.429 70 38 2 24 91 115 183 1.31e-11 62.8
MS.gene009748.t1 AT2G46130 42.857 70 37 2 24 91 31 99 1.73e-11 60.5
MS.gene009748.t1 AT2G04880 38.372 86 43 2 6 82 257 341 1.79e-11 64.3
MS.gene009748.t1 AT2G04880 38.372 86 43 2 6 82 281 365 1.98e-11 64.3
MS.gene009748.t1 AT4G31550 45.614 57 31 0 22 78 245 301 2.00e-11 63.9
MS.gene009748.t1 AT4G31550 45.614 57 31 0 22 78 244 300 2.03e-11 63.9
MS.gene009748.t1 AT5G41570 41.429 70 38 2 24 91 99 167 2.29e-11 61.6
MS.gene009748.t1 AT5G58430 43.056 72 39 1 205 274 552 623 8.39e-11 62.4
MS.gene009748.t1 AT5G45260 47.368 57 28 1 24 78 1209 1265 8.44e-11 62.8

Find 64 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTCTCCCGTACCACAATT+TGG 0.175098 5.3:-58388868 MS.gene009748:CDS
ATACTTGATAATTTGTTTCT+TGG 0.188726 5.3:-58387441 MS.gene009748:CDS
AATCTTCATCGGGAAGTTTC+AGG 0.234190 5.3:-58387523 MS.gene009748:CDS
GGCCTCTGGGATAGAGCTTA+TGG 0.292379 5.3:+58388106 None:intergenic
CCAGATTCTAAAGTTGTTGA+TGG 0.305679 5.3:+58388393 None:intergenic
ATTTGGGAACGATAATAAAA+TGG 0.307334 5.3:-58388851 MS.gene009748:CDS
AAGTTGTTGTACATGCTTCT+TGG 0.319547 5.3:+58388542 None:intergenic
AAGCTAGCTGCTCGGGCAGA+TGG 0.322489 5.3:-58388083 MS.gene009748:CDS
GCTTATGAATACATTGAGTA+TGG 0.325197 5.3:-58387483 MS.gene009748:CDS
TATCTTACTTCAAATATGTT+TGG 0.326206 5.3:+58388510 None:intergenic
CAGCAGAGGAACGTTGTTAA+TGG 0.326567 5.3:-58388002 MS.gene009748:CDS
AGCTAGCTGCTCGGGCAGAT+GGG 0.331925 5.3:-58388082 MS.gene009748:CDS
ATAATTTGTTTCTTGGAAAC+AGG 0.334894 5.3:-58387434 MS.gene009748:CDS
ATATTCACTAGTTGTGGTTC+TGG 0.339075 5.3:+58388450 None:intergenic
CCATCAACAACTTTAGAATC+TGG 0.362743 5.3:-58388393 MS.gene009748:CDS
CGAGCAGCTAGCTTGGCCTC+TGG 0.368565 5.3:+58388092 None:intergenic
CTGTTCATGATAATGATCTA+AGG 0.380437 5.3:-58387593 MS.gene009748:CDS
TCTCTCCCGTACCACAATTT+GGG 0.389464 5.3:-58388867 MS.gene009748:CDS
CTCCAGGTAAACCCATCTTT+CGG 0.403565 5.3:+58388826 None:intergenic
AATAAAATGGCACCGAAAGA+TGG 0.407314 5.3:-58388838 MS.gene009748:CDS
GCTAGCTGCTCGGGCAGATG+GGG 0.408345 5.3:-58388081 MS.gene009748:CDS
GGGTTTACCTGGAGAAAGTA+TGG 0.409588 5.3:-58388817 MS.gene009748:CDS
AGAGGCCAAGCTAGCTGCTC+GGG 0.422722 5.3:-58388090 MS.gene009748:CDS
ATCTGCCCGAGCAGCTAGCT+TGG 0.425005 5.3:+58388085 None:intergenic
GAGCAGCTAGCTTGGCCTCT+GGG 0.461901 5.3:+58388093 None:intergenic
CAGAGGCCAAGCTAGCTGCT+CGG 0.472147 5.3:-58388091 MS.gene009748:CDS
AACACCTTGCTGCCAGCGTA+TGG 0.474940 5.3:-58387546 MS.gene009748:CDS
TTCGTTTCAGGAGTTACTAC+AGG 0.475975 5.3:-58388590 MS.gene009748:intron
TTTCTTGCCATACTTTCTCC+AGG 0.479745 5.3:+58388810 None:intergenic
CTAGCTGCTCGGGCAGATGG+GGG 0.484526 5.3:-58388080 MS.gene009748:CDS
GAATCTGGGTGGCTTTCAGC+AGG 0.484545 5.3:-58388378 MS.gene009748:intron
TCGTTCCCAAATTGTGGTAC+GGG 0.490226 5.3:+58388862 None:intergenic
CCAACGACATTGTCCATCAT+AGG 0.492648 5.3:+58388050 None:intergenic
TCTAAAGTTGTTGATGGACT+AGG 0.493566 5.3:+58388399 None:intergenic
ATCGTTCCCAAATTGTGGTA+CGG 0.496722 5.3:+58388861 None:intergenic
CACCGAAAGATGGGTTTACC+TGG 0.499782 5.3:-58388828 MS.gene009748:CDS
CATCAACAACTTTAGAATCT+GGG 0.505467 5.3:-58388392 MS.gene009748:CDS
TTTGAGATATTCACTAGTTG+TGG 0.506163 5.3:+58388444 None:intergenic
ATAAAATGGCACCGAAAGAT+GGG 0.516299 5.3:-58388837 MS.gene009748:CDS
CCAGCGTATGGAATCTTCAT+CGG 0.519610 5.3:-58387534 MS.gene009748:CDS
TTATTATCGTTCCCAAATTG+TGG 0.522799 5.3:+58388856 None:intergenic
CAGCGTATGGAATCTTCATC+GGG 0.526606 5.3:-58387533 MS.gene009748:CDS
TAGCTGCTCGGGCAGATGGG+GGG 0.526784 5.3:-58388079 MS.gene009748:CDS
TTGTTTCTTGGAAACAGGAC+AGG 0.528742 5.3:-58387429 MS.gene009748:CDS
CATGAACAGACCATGTGCAC+TGG 0.537808 5.3:+58387607 None:intergenic
TGCAGAAACGGAAGGGACAA+TGG 0.550989 5.3:-58387958 MS.gene009748:CDS
GGAACTGTTAGAGAGCATAC+TGG 0.570714 5.3:-58387937 MS.gene009748:CDS
TATGGCAAGAAAGATATACT+TGG 0.584750 5.3:-58388799 MS.gene009748:CDS
AAGAAGCATGTACAACAACT+TGG 0.584808 5.3:-58388540 MS.gene009748:CDS
TGGCTTGACACGCTTTCGTG+TGG 0.589575 5.3:+58388562 None:intergenic
CCTATGATGGACAATGTCGT+TGG 0.593150 5.3:-58388050 MS.gene009748:CDS
AGGAACGTTGTTAATGGAGA+CGG 0.608385 5.3:-58387996 MS.gene009748:CDS
GATTCCATACGCTGGCAGCA+AGG 0.613878 5.3:+58387542 None:intergenic
ACAACTAGTGAATATCTCAA+AGG 0.632999 5.3:-58388442 MS.gene009748:CDS
TATGCAGAATCCAGTGCACA+TGG 0.634816 5.3:-58387617 MS.gene009748:intron
CCGATGAAGATTCCATACGC+TGG 0.650099 5.3:+58387534 None:intergenic
ATATTTGAAGTAAGATACAA+TGG 0.650994 5.3:-58388504 MS.gene009748:CDS
AGTTGTTGATGGACTAGGCA+TGG 0.666950 5.3:+58388404 None:intergenic
CTGCTATAAGATCACAGCAG+AGG 0.672431 5.3:-58388016 MS.gene009748:CDS
CAACAACTTTAGAATCTGGG+TGG 0.682113 5.3:-58388389 MS.gene009748:CDS
TTTGAAGTAAGATACAATGG+TGG 0.696071 5.3:-58388501 MS.gene009748:CDS
TACTTGGCTTCAAATACCCG+AGG 0.697044 5.3:-58388783 MS.gene009748:intron
TGTTGATGGACTAGGCATGG+TGG 0.718610 5.3:+58388407 None:intergenic
ATCCATAAGCTCTATCCCAG+AGG 0.724834 5.3:-58388108 MS.gene009748:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATTA+TGG - chr5.3:58387662-58387681 MS.gene009748:intron 0.0%
!! ATAAATTGTATATATAATGG+TGG + chr5.3:58388091-58388110 None:intergenic 15.0%
!!! ACAAGTTGAATATTTAAATA+CGG - chr5.3:58387960-58387979 MS.gene009748:CDS 15.0%
!! ACTGAAATATTATGTTCTAT+GGG + chr5.3:58388621-58388640 None:intergenic 20.0%
!! AGAAAAAGCAAATAAAAGAA+GGG - chr5.3:58388464-58388483 MS.gene009748:CDS 20.0%
!! TAATTAGTTAATCTTTGACT+CGG - chr5.3:58387566-58387585 MS.gene009748:CDS 20.0%
!! TACTGAAATATTATGTTCTA+TGG + chr5.3:58388622-58388641 None:intergenic 20.0%
!! TAGAAAAAGCAAATAAAAGA+AGG - chr5.3:58388463-58388482 MS.gene009748:CDS 20.0%
!! TATCTTACTTCAAATATGTT+TGG + chr5.3:58387801-58387820 None:intergenic 20.0%
!! TTTGTTTGATATATTGAAGT+TGG + chr5.3:58388155-58388174 None:intergenic 20.0%
!!! ATACTTGATAATTTGTTTCT+TGG - chr5.3:58388867-58388886 MS.gene009748:CDS 20.0%
!!! ATATTTGAAGTAAGATACAA+TGG - chr5.3:58387804-58387823 MS.gene009748:intron 20.0%
!!! ATTACACTCTTTTTTCTTTA+GGG - chr5.3:58388045-58388064 MS.gene009748:CDS 20.0%
!!! ATTTTTTCATGATGAATAAC+TGG - chr5.3:58388433-58388452 MS.gene009748:CDS 20.0%
! ATTTGGGAACGATAATAAAA+TGG - chr5.3:58387457-58387476 MS.gene009748:CDS 25.0%
! TGAAATGTTTATTTCGTTTC+AGG - chr5.3:58387706-58387725 MS.gene009748:intron 25.0%
!! ATTTTCATTTTCTGCAGAAA+CGG - chr5.3:58388338-58388357 MS.gene009748:intron 25.0%
!! GATACTGATATTGCAATTTT+TGG - chr5.3:58388486-58388505 MS.gene009748:CDS 25.0%
!! TATATATATGGGTGAGTTTT+AGG + chr5.3:58387617-58387636 None:intergenic 25.0%
!!! ATAATTTGTTTCTTGGAAAC+AGG - chr5.3:58388874-58388893 MS.gene009748:CDS 25.0%
!!! GATTACACTCTTTTTTCTTT+AGG - chr5.3:58388044-58388063 MS.gene009748:CDS 25.0%
AACTCTATCAAAAAAGCTCA+TGG - chr5.3:58388556-58388575 MS.gene009748:CDS 30.0%
ACAACTAGTGAATATCTCAA+AGG - chr5.3:58387866-58387885 MS.gene009748:intron 30.0%
ACTCTATCAAAAAAGCTCAT+GGG - chr5.3:58388557-58388576 MS.gene009748:CDS 30.0%
ATCGAAGTCTGAAAAATATG+CGG - chr5.3:58388395-58388414 MS.gene009748:CDS 30.0%
ATGGATTTGTAACATAATGC+AGG - chr5.3:58387681-58387700 MS.gene009748:intron 30.0%
GCTTATGAATACATTGAGTA+TGG - chr5.3:58388825-58388844 MS.gene009748:CDS 30.0%
TATGGCAAGAAAGATATACT+TGG - chr5.3:58387509-58387528 MS.gene009748:CDS 30.0%
TTAATTGACCATATGTACCT+CGG + chr5.3:58387545-58387564 None:intergenic 30.0%
TTATTATCGTTCCCAAATTG+TGG + chr5.3:58387455-58387474 None:intergenic 30.0%
! CTGTTCATGATAATGATCTA+AGG - chr5.3:58388715-58388734 MS.gene009748:intron 30.0%
! TTTGAAGTAAGATACAATGG+TGG - chr5.3:58387807-58387826 MS.gene009748:intron 30.0%
! TTTGAGATATTCACTAGTTG+TGG + chr5.3:58387867-58387886 None:intergenic 30.0%
! TTTTCATGATGAATAACTGG+AGG - chr5.3:58388436-58388455 MS.gene009748:CDS 30.0%
!! CATCAACAACTTTAGAATCT+GGG - chr5.3:58387916-58387935 MS.gene009748:CDS 30.0%
!!! GCACTTTTTCTCTGTTTTTT+TGG + chr5.3:58388524-58388543 None:intergenic 30.0%
!!! GGTGTTGCAATTTTTAAAGT+TGG - chr5.3:58388584-58388603 MS.gene009748:intron 30.0%
!!! TTGCAATTTTTGGTGATGTT+TGG - chr5.3:58388496-58388515 MS.gene009748:CDS 30.0%
!!! TTGTGGTTCTGGTAATTTTA+AGG + chr5.3:58387850-58387869 None:intergenic 30.0%
AAGTTGTTGTACATGCTTCT+TGG + chr5.3:58387769-58387788 None:intergenic 35.0%
ATATTCACTAGTTGTGGTTC+TGG + chr5.3:58387861-58387880 None:intergenic 35.0%
ATGGATTTACCTGCAGAATT+TGG + chr5.3:58388186-58388205 None:intergenic 35.0%
TAATTGACCATATGTACCTC+GGG + chr5.3:58387544-58387563 None:intergenic 35.0%
TCAAAAAAGCTCATGGGATA+AGG - chr5.3:58388563-58388582 MS.gene009748:CDS 35.0%
! AAGAAGCATGTACAACAACT+TGG - chr5.3:58387768-58387787 MS.gene009748:intron 35.0%
! AATAAAATGGCACCGAAAGA+TGG - chr5.3:58387470-58387489 MS.gene009748:CDS 35.0%
! ATAAAATGGCACCGAAAGAT+GGG - chr5.3:58387471-58387490 MS.gene009748:CDS 35.0%
!! CCAGATTCTAAAGTTGTTGA+TGG + chr5.3:58387918-58387937 None:intergenic 35.0%
!! CCATCAACAACTTTAGAATC+TGG - chr5.3:58387915-58387934 MS.gene009748:CDS 35.0%
!! TAATTTTAAGGACATGCTGC+AGG + chr5.3:58387838-58387857 None:intergenic 35.0%
!! TCTAAAGTTGTTGATGGACT+AGG + chr5.3:58387912-58387931 None:intergenic 35.0%
AATCTTCATCGGGAAGTTTC+AGG - chr5.3:58388785-58388804 MS.gene009748:CDS 40.0%
AGGAACGTTGTTAATGGAGA+CGG - chr5.3:58388312-58388331 MS.gene009748:intron 40.0%
ATCGTTCCCAAATTGTGGTA+CGG + chr5.3:58387450-58387469 None:intergenic 40.0%
TCAAATACCCGAGGTACATA+TGG - chr5.3:58387534-58387553 MS.gene009748:CDS 40.0%
TTCGTTTCAGGAGTTACTAC+AGG - chr5.3:58387718-58387737 MS.gene009748:intron 40.0%
TTTCTTGCCATACTTTCTCC+AGG + chr5.3:58387501-58387520 None:intergenic 40.0%
! CATTTTCTGCAGAAACGGAA+GGG - chr5.3:58388343-58388362 MS.gene009748:intron 40.0%
! TCATTTTCTGCAGAAACGGA+AGG - chr5.3:58388342-58388361 MS.gene009748:intron 40.0%
! TTGTTTCTTGGAAACAGGAC+AGG - chr5.3:58388879-58388898 MS.gene009748:CDS 40.0%
!! CAACAACTTTAGAATCTGGG+TGG - chr5.3:58387919-58387938 MS.gene009748:CDS 40.0%
ATCCATAAGCTCTATCCCAG+AGG - chr5.3:58388200-58388219 MS.gene009748:intron 45.0%
ATCTCTCCCGTACCACAATT+TGG - chr5.3:58387440-58387459 MS.gene009748:CDS 45.0%
CAGCAGAGGAACGTTGTTAA+TGG - chr5.3:58388306-58388325 MS.gene009748:intron 45.0%
CAGCGTATGGAATCTTCATC+GGG - chr5.3:58388775-58388794 MS.gene009748:intron 45.0%
CCAACGACATTGTCCATCAT+AGG + chr5.3:58388261-58388280 None:intergenic 45.0%
CCAGCGTATGGAATCTTCAT+CGG - chr5.3:58388774-58388793 MS.gene009748:intron 45.0%
CTCCAGGTAAACCCATCTTT+CGG + chr5.3:58387485-58387504 None:intergenic 45.0%
CTGCTATAAGATCACAGCAG+AGG - chr5.3:58388292-58388311 MS.gene009748:intron 45.0%
GGGTTTACCTGGAGAAAGTA+TGG - chr5.3:58387491-58387510 MS.gene009748:CDS 45.0%
TACTTGGCTTCAAATACCCG+AGG - chr5.3:58387525-58387544 MS.gene009748:CDS 45.0%
TATGCAGAATCCAGTGCACA+TGG - chr5.3:58388691-58388710 MS.gene009748:intron 45.0%
TCGTTCCCAAATTGTGGTAC+GGG + chr5.3:58387449-58387468 None:intergenic 45.0%
TCTCTCCCGTACCACAATTT+GGG - chr5.3:58387441-58387460 MS.gene009748:CDS 45.0%
! ACCTGCAGAATTTGGTGACA+CGG + chr5.3:58388178-58388197 None:intergenic 45.0%
! GGAACTGTTAGAGAGCATAC+TGG - chr5.3:58388371-58388390 MS.gene009748:intron 45.0%
!! AGTTGTTGATGGACTAGGCA+TGG + chr5.3:58387907-58387926 None:intergenic 45.0%
!! CCTATGATGGACAATGTCGT+TGG - chr5.3:58388258-58388277 MS.gene009748:intron 45.0%
!! ATATATGTATTTATATATAT+GGG + chr5.3:58387628-58387647 None:intergenic 5.0%
!! TATATATGTATTTATATATA+TGG + chr5.3:58387629-58387648 None:intergenic 5.0%
!! TTTATAAATTGTATATATAA+TGG + chr5.3:58388094-58388113 None:intergenic 5.0%
ACCGTGTCACCAAATTCTGC+AGG - chr5.3:58388174-58388193 MS.gene009748:intron 50.0%
CATGAACAGACCATGTGCAC+TGG + chr5.3:58388704-58388723 None:intergenic 50.0%
CCGATGAAGATTCCATACGC+TGG + chr5.3:58388777-58388796 None:intergenic 50.0%
TGCAGAAACGGAAGGGACAA+TGG - chr5.3:58388350-58388369 MS.gene009748:intron 50.0%
! CACCGAAAGATGGGTTTACC+TGG - chr5.3:58387480-58387499 MS.gene009748:CDS 50.0%
!! TGTTGATGGACTAGGCATGG+TGG + chr5.3:58387904-58387923 None:intergenic 50.0%
AACACCTTGCTGCCAGCGTA+TGG - chr5.3:58388762-58388781 MS.gene009748:intron 55.0%
GAATCTGGGTGGCTTTCAGC+AGG - chr5.3:58387930-58387949 MS.gene009748:CDS 55.0%
GATTCCATACGCTGGCAGCA+AGG + chr5.3:58388769-58388788 None:intergenic 55.0%
TGGCTTGACACGCTTTCGTG+TGG + chr5.3:58387749-58387768 None:intergenic 55.0%
!! GGCCTCTGGGATAGAGCTTA+TGG + chr5.3:58388205-58388224 None:intergenic 55.0%
!! TGGGGGGCATCATCCTATGA+TGG - chr5.3:58388245-58388264 MS.gene009748:intron 55.0%
AAGCTAGCTGCTCGGGCAGA+TGG - chr5.3:58388225-58388244 MS.gene009748:intron 60.0%
AGAGGCCAAGCTAGCTGCTC+GGG - chr5.3:58388218-58388237 MS.gene009748:intron 60.0%
AGCTAGCTGCTCGGGCAGAT+GGG - chr5.3:58388226-58388245 MS.gene009748:intron 60.0%
ATCTGCCCGAGCAGCTAGCT+TGG + chr5.3:58388226-58388245 None:intergenic 60.0%
CAGAGGCCAAGCTAGCTGCT+CGG - chr5.3:58388217-58388236 MS.gene009748:intron 60.0%
! GAGCAGCTAGCTTGGCCTCT+GGG + chr5.3:58388218-58388237 None:intergenic 60.0%
CTAGCTGCTCGGGCAGATGG+GGG - chr5.3:58388228-58388247 MS.gene009748:intron 65.0%
GCTAGCTGCTCGGGCAGATG+GGG - chr5.3:58388227-58388246 MS.gene009748:intron 65.0%
TAGCTGCTCGGGCAGATGGG+GGG - chr5.3:58388229-58388248 MS.gene009748:intron 65.0%
! CGAGCAGCTAGCTTGGCCTC+TGG + chr5.3:58388219-58388238 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 58387419 58388911 58387419 ID=MS.gene009748
chr5.3 mRNA 58387419 58388911 58387419 ID=MS.gene009748.t1;Parent=MS.gene009748
chr5.3 exon 58388784 58388911 58388784 ID=MS.gene009748.t1.exon1;Parent=MS.gene009748.t1
chr5.3 CDS 58388784 58388911 58388784 ID=cds.MS.gene009748.t1;Parent=MS.gene009748.t1
chr5.3 exon 58388379 58388602 58388379 ID=MS.gene009748.t1.exon2;Parent=MS.gene009748.t1
chr5.3 CDS 58388379 58388602 58388379 ID=cds.MS.gene009748.t1;Parent=MS.gene009748.t1
chr5.3 exon 58387873 58388134 58387873 ID=MS.gene009748.t1.exon3;Parent=MS.gene009748.t1
chr5.3 CDS 58387873 58388134 58387873 ID=cds.MS.gene009748.t1;Parent=MS.gene009748.t1
chr5.3 exon 58387419 58387632 58387419 ID=MS.gene009748.t1.exon4;Parent=MS.gene009748.t1
chr5.3 CDS 58387419 58387632 58387419 ID=cds.MS.gene009748.t1;Parent=MS.gene009748.t1
Gene Sequence

>MS.gene009748

ATGAGATTGAGAGCAATAGTTATCTCTCCCGTACCACAATTTGGGAACGATAATAAAATGGCACCGAAAGATGGGTTTACCTGGAGAAAGTATGGCAAGAAAGATATACTTGGCTTCAAATACCCGAGGTACATATGGTCAATTAAGTAATTAGTTAATCTTTGACTCGGTCAACTTATGTCTAGCTTTCTCAAACCTAAAACTCACCCATATATATAAATACATATATATATATATATATATATATATATATATATATATTATGGATTTGTAACATAATGCAGGTTTGAAATGTTTATTTCGTTTCAGGAGTTACTACAGGTGCAGCCACACGAAAGCGTGTCAAGCCAAGAAGCATGTACAACAACTTGGTGTCAGTCCAAACATATTTGAAGTAAGATACAATGGTGGACATACCTGCAGCATGTCCTTAAAATTACCAGAACCACAACTAGTGAATATCTCAAAGGATATGACTCAAACCACCATGCCTAGTCCATCAACAACTTTAGAATCTGGGTGGCTTTCAGCAGGTAAAGAAACAAGTTGAATATTTAAATACGGTTAACATTGTAATTTTGATATTTATTTATTTTTTAATGTTTATATTAGATATAGATAGATTGATTACACTCTTTTTTCTTTAGGGAAGATTGATCACACTTTCGTCCACCATTATATATACAATTTATAAACATGAATATAATATATAATAATATTCAACTAATTCTAACCAACTTCAATATATCAAACAAACCGTGTCACCAAATTCTGCAGGTAAATCCATAAGCTCTATCCCAGAGGCCAAGCTAGCTGCTCGGGCAGATGGGGGGCATCATCCTATGATGGACAATGTCGTTGGCTATCTTGTTTCTGCTATAAGATCACAGCAGAGGAACGTTGTTAATGGAGACGGAGCATTTTCATTTTCTGCAGAAACGGAAGGGACAATGGAACTGTTAGAGAGCATACTGGCATCGAAGTCTGAAAAATATGCGGACACTTCTCTGCGTCATTTTTTCATGATGAATAACTGGAGGTATTTAGAAAAAGCAAATAAAAGAAGGGATACTGATATTGCAATTTTTGGTGATGTTTGGTACCAAAAAAACAGAGAAAAAGTGCAACAAAAGCTTGAACTCTATCAAAAAAGCTCATGGGATAAGGTGTTGCAATTTTTAAAGTTGGATATAATTGAGCCCATAGAACATAATATTTCAGTAGATTTAATGAAAGAAAAGCTCAGTATGTTTAATATGCACTTTACTGAGATATGCAGAATCCAGTGCACATGGTCTGTTCATGATAATGATCTAAGGACAAGAATAATTAGATCTCTCAAAAACACCTTGCTGCCAGCGTATGGAATCTTCATCGGGAAGTTTCAGGATTTTCTTAAAAACAATGCTTATGAATACATTGAGTATGGAATGTTTGACATTCATGATATACTTGATAATTTGTTTCTTGGAAACAGGACAGGTAGAGTTTGA
Protein sequence

>MS.gene009748.t1

MRLRAIVISPVPQFGNDNKMAPKDGFTWRKYGKKDILGFKYPRSYYRCSHTKACQAKKHVQQLGVSPNIFEVRYNGGHTCSMSLKLPEPQLVNISKDMTQTTMPSPSTTLESGWLSAGKSISSIPEAKLAARADGGHHPMMDNVVGYLVSAIRSQQRNVVNGDGAFSFSAETEGTMELLESILASKSEKYADTSLRHFFMMNNWRIQCTWSVHDNDLRTRIIRSLKNTLLPAYGIFIGKFQDFLKNNAYEYIEYGMFDIHDILDNLFLGNRTGRV