AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene009824

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009824.t1 MTR_5g071560 89.630 405 23 5 1 403 1 388 0.0 655
MS.gene009824.t1 MTR_2g088020 36.043 369 192 13 4 358 5 343 2.98e-60 201
MS.gene009824.t1 MTR_4g049730 38.719 359 175 15 4 346 3 332 5.66e-60 201
MS.gene009824.t1 MTR_5g017140 39.636 275 139 10 3 264 2 262 1.42e-54 184
MS.gene009824.t1 MTR_2g023890 41.791 268 131 9 4 264 5 254 1.17e-53 182
MS.gene009824.t1 MTR_2g005290 36.111 324 158 10 4 297 10 314 1.74e-53 183
MS.gene009824.t1 MTR_5g017110 39.068 279 141 9 1 264 1 265 1.37e-52 180
MS.gene009824.t1 MTR_0154s0040 34.699 366 182 16 4 345 3 335 4.58e-52 178
MS.gene009824.t1 MTR_0189s0010 33.060 366 188 15 4 345 23 355 1.17e-48 169
MS.gene009824.t1 MTR_0154s0020 32.787 366 189 17 4 345 3 335 2.80e-47 165
MS.gene009824.t1 MTR_3g096230 36.364 275 147 12 2 264 242 500 6.51e-44 161
MS.gene009824.t1 MTR_3g096230 36.364 275 147 12 2 264 242 500 2.33e-43 161
MS.gene009824.t1 MTR_8g098425 35.793 271 150 9 4 264 408 664 1.07e-40 155
MS.gene009824.t1 MTR_7g113490 34.050 279 151 9 4 264 68 331 5.17e-40 152
MS.gene009824.t1 MTR_1g100250 33.333 285 165 10 4 278 411 680 7.96e-40 152
MS.gene009824.t1 MTR_8g093730 33.333 279 152 11 1 264 296 555 1.32e-39 151
MS.gene009824.t1 MTR_5g017890 33.692 279 154 10 2 264 370 633 1.27e-38 148
MS.gene009824.t1 MTR_4g094415 35.036 274 152 10 1 264 160 417 2.70e-37 142
MS.gene009824.t1 MTR_1g105290 30.686 277 163 7 4 264 55 318 5.44e-37 141
MS.gene009824.t1 MTR_1g105290 30.824 279 160 8 4 264 55 318 1.42e-36 142
MS.gene009824.t1 MTR_1g105290 30.686 277 163 7 4 264 55 318 2.68e-36 141
MS.gene009824.t1 MTR_3g101210 32.491 277 156 10 4 264 307 568 8.26e-36 139
MS.gene009824.t1 MTR_3g101210 32.130 277 157 10 4 264 307 568 1.63e-35 139
MS.gene009824.t1 MTR_4g075410 32.852 277 164 7 4 272 20 282 4.28e-34 135
MS.gene009824.t1 MTR_4g075410 32.852 277 164 7 4 272 20 282 5.30e-34 135
MS.gene009824.t1 MTR_4g074875 32.130 277 166 7 4 272 20 282 2.18e-33 134
MS.gene009824.t1 MTR_4g074875 32.130 277 166 7 4 272 20 282 2.46e-33 133
MS.gene009824.t1 MTR_5g059880 32.353 272 159 10 2 264 190 445 6.04e-32 127
MS.gene009824.t1 MTR_5g059940 31.618 272 161 10 2 264 123 378 2.26e-31 124
MS.gene009824.t1 MTR_5g060350 31.618 272 161 10 2 264 319 574 2.83e-30 123
MS.gene009824.t1 MTR_4g019410 32.215 298 172 11 4 290 19 297 4.52e-27 114
MS.gene009824.t1 MTR_4g019410 32.215 298 172 11 4 290 19 297 4.87e-27 114
MS.gene009824.t1 MTR_4g094415 33.636 220 122 8 1 211 160 364 8.03e-27 111
MS.gene009824.t1 MTR_3g073250 32.258 248 144 9 26 264 291 523 1.09e-26 112
MS.gene009824.t1 MTR_5g059910 29.151 271 169 8 2 264 129 384 2.16e-24 104
MS.gene009824.t1 MTR_7g106730 32.482 274 151 13 7 264 91 346 1.24e-23 102
MS.gene009824.t1 MTR_6g071280 29.889 271 160 11 10 264 62 318 2.54e-23 100
MS.gene009824.t1 MTR_8g024590 31.698 265 154 11 7 261 20 267 1.37e-22 99.8
MS.gene009824.t1 MTR_1g055255 29.710 276 164 10 4 265 124 383 4.08e-22 99.4
MS.gene009824.t1 MTR_4g005830 34.555 191 98 8 93 265 159 340 4.46e-22 97.4
MS.gene009824.t1 MTR_1g048630 28.409 264 161 7 10 264 13 257 4.60e-22 99.8
MS.gene009824.t1 MTR_4g006970 27.376 263 171 9 7 262 23 272 7.79e-22 97.8
MS.gene009824.t1 MTR_2g078740 27.381 336 213 11 9 333 20 335 1.09e-21 98.2
MS.gene009824.t1 MTR_1g041150 29.091 275 165 10 4 264 118 376 2.10e-21 97.1
MS.gene009824.t1 MTR_7g116390 30.403 273 154 14 10 265 22 275 3.05e-21 94.0
MS.gene009824.t1 MTR_2g078740 27.463 335 213 11 9 333 20 334 3.37e-21 96.7
MS.gene009824.t1 MTR_2g078740 29.278 263 164 8 9 264 20 267 4.55e-21 96.3
MS.gene009824.t1 MTR_8g099095 28.261 276 166 11 4 264 66 324 4.69e-21 95.9
MS.gene009824.t1 MTR_3g098070 27.737 274 172 9 4 265 29 288 5.88e-21 94.0
MS.gene009824.t1 MTR_3g466400 28.070 228 141 8 1 219 11 224 5.99e-21 95.1
MS.gene009824.t1 MTR_6g048250 28.470 281 180 9 1 274 16 282 7.57e-21 93.6
MS.gene009824.t1 MTR_8g024100 29.412 272 168 10 4 264 15 273 7.92e-21 95.5
MS.gene009824.t1 MTR_4g107490 28.727 275 166 11 4 264 73 331 9.12e-21 95.1
MS.gene009824.t1 MTR_1g054865 30.037 273 159 11 7 264 164 419 9.17e-21 95.1
MS.gene009824.t1 MTR_3g098070 27.737 274 172 9 4 265 29 288 1.18e-20 94.4
MS.gene009824.t1 MTR_1g096490 28.467 274 170 10 4 265 30 289 1.29e-20 94.4
MS.gene009824.t1 MTR_5g089320 27.076 277 172 12 2 264 66 326 1.63e-20 94.4
MS.gene009824.t1 MTR_8g095440 29.197 274 162 12 7 265 33 289 3.35e-20 92.4
MS.gene009824.t1 MTR_5g022030 29.304 273 163 10 7 264 102 359 4.60e-20 92.8
MS.gene009824.t1 MTR_6g048250 27.134 328 214 11 1 321 16 325 5.16e-20 92.0
MS.gene009824.t1 MTR_6g048250 27.134 328 214 11 1 321 16 325 5.21e-20 92.4
MS.gene009824.t1 MTR_5g022030 29.304 273 163 10 7 264 102 359 6.74e-20 92.4
MS.gene009824.t1 MTR_8g095440 29.197 274 162 12 7 265 33 289 8.82e-20 92.0
MS.gene009824.t1 MTR_3g099920 29.008 262 166 8 7 262 22 269 9.52e-20 91.7
MS.gene009824.t1 MTR_0685s0020 40.909 132 71 5 137 263 114 243 1.02e-19 89.0
MS.gene009824.t1 MTR_8g024600 30.000 270 162 11 1 260 14 266 1.23e-19 90.9
MS.gene009824.t1 MTR_2g020380 30.451 266 156 7 9 263 9 256 1.31e-19 92.4
MS.gene009824.t1 MTR_6g012990 27.758 281 182 9 1 274 16 282 1.49e-19 90.1
MS.gene009824.t1 MTR_7g106710 30.769 273 157 13 7 264 138 393 1.93e-19 90.5
MS.gene009824.t1 MTR_7g106710 29.927 274 158 11 7 264 138 393 2.03e-19 91.3
MS.gene009824.t1 MTR_7g106710 29.927 274 158 11 7 264 138 393 2.05e-19 90.9
MS.gene009824.t1 MTR_7g106710 30.769 273 157 13 7 264 138 393 2.09e-19 90.9
MS.gene009824.t1 MTR_7g068710 29.851 268 160 11 10 264 62 314 2.27e-19 90.9
MS.gene009824.t1 MTR_5g092815 28.364 275 167 12 4 264 91 349 3.40e-19 89.4
MS.gene009824.t1 MTR_5g092810 28.000 275 168 11 4 264 92 350 3.45e-19 90.1
MS.gene009824.t1 MTR_0028s0170 25.874 286 164 11 2 264 76 336 3.55e-19 90.1
MS.gene009824.t1 MTR_6g012990 27.758 281 182 9 1 274 16 282 3.93e-19 89.7
MS.gene009824.t1 MTR_6g005210 25.722 381 246 13 9 371 89 450 5.51e-19 89.4
MS.gene009824.t1 MTR_5g010730 28.195 266 165 9 10 265 429 678 6.47e-19 89.7
MS.gene009824.t1 MTR_1g080020 30.597 268 157 10 10 265 15 265 7.48e-19 86.7
MS.gene009824.t1 MTR_3g110405 28.947 266 166 12 7 265 40 289 7.88e-19 87.0
MS.gene009824.t1 MTR_3g098090 27.437 277 169 11 4 265 32 291 9.39e-19 88.6
MS.gene009824.t1 MTR_5g010730 28.195 266 165 9 10 265 484 733 9.61e-19 89.4
MS.gene009824.t1 MTR_1g052530 27.046 281 169 14 1 264 49 310 4.24e-18 86.3
MS.gene009824.t1 MTR_1g052530 27.402 281 168 14 1 264 49 310 4.27e-18 86.7
MS.gene009824.t1 MTR_7g091890 28.873 284 150 14 7 265 61 317 4.33e-18 86.7
MS.gene009824.t1 MTR_7g091890 28.470 281 155 12 7 265 61 317 4.34e-18 86.3
MS.gene009824.t1 MTR_5g099240 26.642 274 173 9 4 264 24 282 1.01e-17 85.5
MS.gene009824.t1 MTR_2g045470 28.358 268 167 11 1 258 17 269 1.02e-17 85.5
MS.gene009824.t1 MTR_8g095330 28.938 273 160 13 8 265 9 262 1.15e-17 84.3
MS.gene009824.t1 MTR_5g099240 26.642 274 173 9 4 264 96 354 1.55e-17 85.1
MS.gene009824.t1 MTR_3g051770 26.909 275 171 10 4 264 84 342 2.37e-17 84.7
MS.gene009824.t1 MTR_3g073250 29.907 214 125 8 26 231 304 500 3.40e-17 84.0
MS.gene009824.t1 MTR_3g097320 28.571 273 161 13 8 265 8 261 3.46e-17 82.8
MS.gene009824.t1 MTR_2g006330 28.727 275 158 14 8 265 8 261 4.45e-17 82.4
MS.gene009824.t1 MTR_3g086940 28.938 273 160 13 8 265 9 262 4.66e-17 82.4
MS.gene009824.t1 MTR_3g095620 28.938 273 168 10 4 264 25 283 5.97e-17 81.3
MS.gene009824.t1 MTR_2g094090 25.180 278 195 8 1 271 116 387 7.78e-17 82.4
MS.gene009824.t1 MTR_4g128820 27.556 225 140 10 1 217 7 216 9.38e-17 82.4
MS.gene009824.t1 MTR_5g009830 27.599 279 168 11 2 264 65 325 1.03e-16 82.4
MS.gene009824.t1 MTR_5g009830 27.899 276 165 11 2 261 65 322 1.05e-16 82.0
MS.gene009824.t1 MTR_3g072990 30.055 183 111 5 109 276 461 641 1.68e-16 82.4
MS.gene009824.t1 MTR_8g089975 28.571 273 161 13 8 265 8 261 1.69e-16 80.5
MS.gene009824.t1 MTR_3g072990 30.055 183 111 5 109 276 463 643 1.70e-16 82.4
MS.gene009824.t1 MTR_3g072990 30.055 183 111 5 109 276 484 664 1.71e-16 82.4
MS.gene009824.t1 MTR_3g072990 30.055 183 111 5 109 276 486 666 1.76e-16 82.4
MS.gene009824.t1 MTR_4g132070 26.740 273 174 9 4 264 91 349 2.90e-16 81.3
MS.gene009824.t1 MTR_5g075060 24.812 266 178 9 1 258 9 260 3.46e-16 80.9
MS.gene009824.t1 MTR_6g006770 30.729 192 108 9 93 264 91 277 3.51e-16 81.3
MS.gene009824.t1 MTR_6g090470 29.670 273 160 12 8 264 73 329 5.02e-16 79.3
MS.gene009824.t1 MTR_3g099767 27.407 270 168 9 4 265 112 361 5.92e-16 80.1
MS.gene009824.t1 MTR_5g045190 29.213 267 159 12 10 264 245 493 8.67e-16 80.1
MS.gene009824.t1 MTR_4g066660 30.189 212 125 9 7 209 75 272 1.07e-15 79.3
MS.gene009824.t1 MTR_5g088350 27.570 214 133 8 7 211 16 216 1.16e-15 78.2
MS.gene009824.t1 MTR_7g092360 26.493 268 169 9 10 266 22 272 1.39e-15 79.3
MS.gene009824.t1 MTR_5g088350 27.570 214 133 8 7 211 16 216 2.05e-15 78.2
MS.gene009824.t1 MTR_5g088350 27.570 214 133 8 7 211 16 216 2.39e-15 78.2
MS.gene009824.t1 MTR_2g034020 25.564 266 168 9 7 260 469 716 4.19e-15 78.2
MS.gene009824.t1 MTR_4g132040 26.374 273 176 8 4 264 95 354 4.43e-15 77.4
MS.gene009824.t1 MTR_8g086380 27.982 218 126 10 7 211 29 228 4.53e-15 77.4
MS.gene009824.t1 MTR_5g013550 31.163 215 117 9 8 211 10 204 4.64e-15 76.3
MS.gene009824.t1 MTR_2g100030 27.907 215 114 9 93 267 94 307 6.89e-15 77.0
MS.gene009824.t1 MTR_2g006330 31.579 190 108 10 93 265 1 185 7.46e-15 74.7
MS.gene009824.t1 MTR_8g079560 30.806 211 119 8 10 211 29 221 9.51e-15 75.9
MS.gene009824.t1 MTR_6g012980 26.354 277 181 10 16 285 85 345 9.67e-15 76.3
MS.gene009824.t1 MTR_4g088750 33.540 161 90 7 111 260 303 457 1.08e-14 76.3
MS.gene009824.t1 MTR_1g026160 29.630 189 120 6 70 252 203 384 1.26e-14 75.9
MS.gene009824.t1 MTR_4g088755 32.716 162 90 7 111 260 142 296 1.32e-14 75.1
MS.gene009824.t1 MTR_1g026190 26.642 274 171 9 7 264 81 340 1.43e-14 75.9
MS.gene009824.t1 MTR_4g088745 32.716 162 90 7 111 260 147 301 1.50e-14 75.1
MS.gene009824.t1 MTR_4g122160 26.693 251 154 11 10 248 466 698 1.67e-14 76.3
MS.gene009824.t1 MTR_5g067150 25.954 262 167 13 7 258 12 256 2.01e-14 75.1
MS.gene009824.t1 MTR_5g067150 25.954 262 167 13 7 258 12 256 2.15e-14 75.1
MS.gene009824.t1 MTR_4g109090 27.536 207 126 7 10 206 111 303 2.34e-14 75.5
MS.gene009824.t1 MTR_5g067150 25.954 262 167 13 7 258 12 256 2.36e-14 74.7
MS.gene009824.t1 MTR_3g100090 27.586 261 149 13 10 252 659 897 2.73e-14 75.5
MS.gene009824.t1 MTR_7g095450 24.451 319 205 11 10 315 10 305 3.24e-14 75.1
MS.gene009824.t1 MTR_8g028720 24.638 345 172 15 8 304 41 345 3.74e-14 73.9
MS.gene009824.t1 MTR_7g118020 29.568 301 158 16 2 271 142 419 3.81e-14 74.7
MS.gene009824.t1 MTR_4g078290 29.756 205 124 8 10 206 135 327 3.82e-14 75.1
MS.gene009824.t1 MTR_4g078290 29.756 205 124 8 10 206 135 327 4.06e-14 74.7
MS.gene009824.t1 MTR_8g089975 30.851 188 112 9 93 265 1 185 4.30e-14 72.4
MS.gene009824.t1 MTR_1g098300 28.922 204 125 9 10 205 132 323 4.57e-14 74.7
MS.gene009824.t1 MTR_2g040510 27.562 283 169 13 8 270 74 340 5.35e-14 73.6
MS.gene009824.t1 MTR_2g094090 27.230 213 143 7 4 209 119 326 5.41e-14 73.2
MS.gene009824.t1 MTR_2g013900 28.295 258 155 10 1 244 158 399 5.94e-14 73.9
MS.gene009824.t1 MTR_4g114670 25.954 262 162 10 7 262 14 249 7.08e-14 73.6
MS.gene009824.t1 MTR_5g018050 28.881 277 160 15 10 268 24 281 7.53e-14 72.8
MS.gene009824.t1 MTR_5g018050 30.806 211 119 9 10 211 24 216 9.45e-14 71.2
MS.gene009824.t1 MTR_8g024600 32.584 178 105 8 93 260 11 183 9.68e-14 72.4
MS.gene009824.t1 MTR_1g016300 28.571 273 165 13 5 265 664 918 1.14e-13 73.6
MS.gene009824.t1 MTR_4g051648 25.843 267 172 9 10 266 14 264 1.87e-13 73.2
MS.gene009824.t1 MTR_6g044740 25.430 291 156 11 8 260 335 602 2.00e-13 72.8
MS.gene009824.t1 MTR_2g045470 30.286 175 111 7 93 258 17 189 2.00e-13 72.0
MS.gene009824.t1 MTR_6g079540 27.368 285 165 14 7 276 663 920 2.12e-13 72.8
MS.gene009824.t1 MTR_6g079540 27.368 285 165 14 7 276 415 672 3.29e-13 72.0
MS.gene009824.t1 MTR_1g071480 27.547 265 170 10 10 266 10 260 4.34e-13 71.6
MS.gene009824.t1 MTR_4g125800 28.788 198 117 9 93 270 92 285 4.93e-13 69.7
MS.gene009824.t1 MTR_1g110180 31.308 214 112 8 6 204 340 533 5.31e-13 71.2
MS.gene009824.t1 MTR_5g055310 32.110 218 108 12 6 205 314 509 5.33e-13 71.2
MS.gene009824.t1 MTR_4g105770 25.105 239 158 8 22 252 77 302 6.19e-13 70.1
MS.gene009824.t1 MTR_1g061190 26.908 249 150 11 10 244 561 791 6.68e-13 71.2
MS.gene009824.t1 MTR_4g125800 28.788 198 117 9 93 270 145 338 6.70e-13 70.1
MS.gene009824.t1 MTR_7g078690 25.478 314 166 15 8 274 42 334 7.90e-13 70.1
MS.gene009824.t1 MTR_4g125800 28.788 198 117 9 93 270 168 361 9.30e-13 69.7
MS.gene009824.t1 MTR_4g068740 27.072 181 93 7 68 209 606 786 1.27e-12 70.5
MS.gene009824.t1 MTR_4g107280 25.573 262 159 11 8 252 93 335 1.35e-12 69.3
MS.gene009824.t1 MTR_4g068740 27.072 181 93 7 68 209 847 1027 1.65e-12 70.1
MS.gene009824.t1 MTR_4g131060 23.664 262 176 10 7 259 21 267 1.72e-12 69.3
MS.gene009824.t1 MTR_5g066490 28.458 253 141 13 10 244 652 882 1.73e-12 70.1
MS.gene009824.t1 MTR_4g086660 28.231 294 162 15 7 271 140 413 1.81e-12 69.7
MS.gene009824.t1 MTR_4g059560 26.848 257 173 11 4 252 117 366 2.37e-12 68.6
MS.gene009824.t1 MTR_6g082700 27.731 238 133 10 2 218 110 329 2.64e-12 68.6
MS.gene009824.t1 MTR_1g026160 31.973 147 88 5 70 211 203 342 3.29e-12 67.8
MS.gene009824.t1 MTR_1g026160 31.973 147 88 5 70 211 201 340 3.32e-12 67.8
MS.gene009824.t1 MTR_1g026160 31.973 147 88 5 70 211 203 342 3.69e-12 67.8
MS.gene009824.t1 MTR_1g026160 31.973 147 88 5 70 211 201 340 3.78e-12 67.8
MS.gene009824.t1 MTR_8g107000 25.442 283 171 14 7 275 732 988 4.31e-12 68.6
MS.gene009824.t1 MTR_1g026160 31.973 147 88 5 70 211 348 487 4.41e-12 68.2
MS.gene009824.t1 MTR_1g026160 31.973 147 88 5 70 211 348 487 4.65e-12 68.2
MS.gene009824.t1 MTR_4g061320 24.679 312 167 13 10 274 46 336 6.99e-12 67.0
MS.gene009824.t1 MTR_1g050690 25.292 257 160 11 10 252 423 661 7.17e-12 67.8
MS.gene009824.t1 MTR_1g010220 26.887 212 127 8 10 209 421 616 8.02e-12 67.8
MS.gene009824.t1 MTR_4g123940 26.378 254 164 11 1 245 23 262 8.49e-12 67.0
MS.gene009824.t1 MTR_1g081790 27.547 265 164 11 5 258 690 937 8.97e-12 67.8
MS.gene009824.t1 MTR_4g107280 29.213 178 111 7 84 252 125 296 9.00e-12 66.6
MS.gene009824.t1 MTR_4g028830 27.875 287 169 15 10 277 30 297 9.16e-12 67.4
MS.gene009824.t1 MTR_4g123940 26.378 254 164 11 1 245 23 262 1.06e-11 66.2
MS.gene009824.t1 MTR_8g092290 29.469 207 122 9 10 206 147 339 1.11e-11 67.0
MS.gene009824.t1 MTR_5g008860 29.612 206 123 9 10 206 146 338 1.43e-11 66.6
MS.gene009824.t1 MTR_3g092230 27.797 295 161 14 7 271 141 413 2.12e-11 66.2
MS.gene009824.t1 MTR_5g082420 27.586 261 145 10 10 245 582 823 2.32e-11 66.2
MS.gene009824.t1 MTR_2g049790 25.283 265 173 11 7 261 26 275 2.77e-11 65.5
MS.gene009824.t1 MTR_7g072710 27.568 185 114 6 94 260 85 267 3.12e-11 64.7
MS.gene009824.t1 MTR_7g072710 25.000 276 166 12 7 260 48 304 4.65e-11 64.3
MS.gene009824.t1 MTR_1g111180 42.268 97 50 5 114 206 783 877 4.67e-11 65.5
MS.gene009824.t1 MTR_1g111180 42.268 97 50 5 114 206 784 878 4.79e-11 65.5
MS.gene009824.t1 MTR_1g081790 28.571 238 146 11 5 233 690 912 5.11e-11 65.5
MS.gene009824.t1 MTR_6g016260 27.526 287 178 13 7 276 9 282 5.65e-11 64.7
MS.gene009824.t1 MTR_4g059560 27.111 225 151 9 4 220 117 336 6.81e-11 63.9
MS.gene009824.t1 MTR_4g109090 27.811 169 98 7 48 206 1 155 7.00e-11 64.3
MS.gene009824.t1 MTR_8g088740 26.829 205 126 7 1 199 1 187 7.28e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009824.t1 AT2G30040 56.546 359 126 9 4 357 17 350 3.50e-124 368
MS.gene009824.t1 AT1G07150 54.167 360 135 9 4 358 23 357 9.52e-120 358
MS.gene009824.t1 AT1G07150 54.167 360 135 9 4 358 9 343 1.23e-119 357
MS.gene009824.t1 AT5G55090 36.702 376 200 11 3 362 5 358 2.57e-62 208
MS.gene009824.t1 AT5G55090 36.410 390 206 12 3 372 67 434 8.68e-62 208
MS.gene009824.t1 AT2G32510 37.008 381 198 11 4 359 3 366 9.60e-61 202
MS.gene009824.t1 AT1G05100 36.798 356 192 11 3 345 2 337 4.20e-58 194
MS.gene009824.t1 AT4G26890 35.040 371 197 15 3 354 4 349 9.21e-55 188
MS.gene009824.t1 AT3G50310 34.699 366 189 15 4 345 3 342 9.34e-52 177
MS.gene009824.t1 AT5G67080 35.598 368 185 17 4 345 3 344 1.04e-50 175
MS.gene009824.t1 AT4G36950 34.174 357 197 15 4 345 3 336 2.42e-44 157
MS.gene009824.t1 AT1G54960 33.452 281 149 9 4 264 68 330 3.34e-42 158
MS.gene009824.t1 AT1G54960 33.452 281 149 9 4 264 68 330 3.34e-42 158
MS.gene009824.t1 AT1G09000 33.569 283 150 9 3 265 68 332 1.12e-41 156
MS.gene009824.t1 AT1G09000 33.569 283 150 9 3 265 68 332 1.72e-41 156
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MS.gene009824.t1 AT4G24400 26.606 218 140 9 7 217 12 216 5.51e-13 70.9
MS.gene009824.t1 AT1G66880 28.986 207 122 9 10 206 973 1164 7.70e-13 71.2
MS.gene009824.t1 AT3G58640 30.992 242 132 11 7 232 556 778 8.19e-13 70.9
MS.gene009824.t1 AT3G58640 30.992 242 132 11 7 232 556 778 8.19e-13 70.9
MS.gene009824.t1 AT1G33770 30.097 206 122 9 10 206 147 339 1.03e-12 70.5
MS.gene009824.t1 AT1G49580 27.778 288 172 12 7 275 153 423 1.21e-12 70.1
MS.gene009824.t1 AT1G74330 27.273 209 126 8 10 206 127 321 1.76e-12 69.7
MS.gene009824.t1 AT3G17510 32.727 165 100 8 90 245 14 176 1.89e-12 68.9
MS.gene009824.t1 AT3G51630 26.962 293 183 13 8 285 29 305 1.90e-12 69.3
MS.gene009824.t1 AT3G51630 26.962 293 183 13 8 285 29 305 1.90e-12 69.3
MS.gene009824.t1 AT3G49370 28.622 283 154 15 7 264 145 404 1.95e-12 69.7
MS.gene009824.t1 AT5G21222 27.027 222 140 9 7 219 16 224 2.02e-12 69.7
MS.gene009824.t1 AT5G21222 27.027 222 140 9 7 219 16 224 2.02e-12 69.7
MS.gene009824.t1 AT5G21222 27.027 222 140 9 7 219 16 224 2.02e-12 69.7
MS.gene009824.t1 AT5G21222 27.027 222 140 9 7 219 16 224 2.02e-12 69.7
MS.gene009824.t1 AT1G74330 27.273 209 126 8 10 206 127 321 2.06e-12 69.7
MS.gene009824.t1 AT1G74330 27.273 209 126 8 10 206 127 321 2.28e-12 69.3
MS.gene009824.t1 AT2G46700 28.716 296 167 15 2 271 141 418 2.50e-12 69.3
MS.gene009824.t1 AT1G08720 28.102 274 165 14 10 271 675 928 2.66e-12 69.3
MS.gene009824.t1 AT1G13350 32.093 215 108 11 11 206 522 717 3.53e-12 68.9
MS.gene009824.t1 AT3G06630 27.315 216 128 9 7 211 437 634 3.71e-12 68.6
MS.gene009824.t1 AT3G06630 27.315 216 128 9 7 211 437 634 3.71e-12 68.6
MS.gene009824.t1 AT3G06630 27.315 216 128 9 7 211 437 634 3.71e-12 68.6
MS.gene009824.t1 AT1G59580 24.444 315 165 14 2 266 30 321 3.96e-12 67.8
MS.gene009824.t1 AT1G59580 24.444 315 165 14 2 266 30 321 3.96e-12 67.8
MS.gene009824.t1 AT4G30960 24.528 265 176 11 7 262 27 276 4.00e-12 68.2
MS.gene009824.t1 AT1G13350 32.093 215 108 11 11 206 476 671 4.03e-12 68.9
MS.gene009824.t1 AT1G73660 27.046 281 167 14 7 274 751 1006 4.05e-12 68.9
MS.gene009824.t1 AT5G41990 27.820 266 169 11 9 264 34 286 5.27e-12 68.2
MS.gene009824.t1 AT4G08470 29.032 186 113 6 1 181 300 471 5.39e-12 67.8
MS.gene009824.t1 AT1G13350 32.093 215 108 11 11 206 449 644 5.79e-12 68.2
MS.gene009824.t1 AT5G49470 32.759 116 74 3 133 244 671 786 5.87e-12 68.2
MS.gene009824.t1 AT3G06630 27.315 216 128 9 7 211 353 550 6.20e-12 67.8
MS.gene009824.t1 AT1G18160 27.240 279 165 14 10 275 721 974 8.30e-12 67.8
MS.gene009824.t1 AT2G41140 27.211 294 171 13 10 283 129 399 8.42e-12 67.4
MS.gene009824.t1 AT5G49470 27.907 215 126 9 7 210 494 690 9.10e-12 67.4
MS.gene009824.t1 AT3G46930 31.210 157 89 6 66 214 164 309 9.41e-12 66.6
MS.gene009824.t1 AT2G46700 34.591 159 85 8 129 271 82 237 9.49e-12 67.0
MS.gene009824.t1 AT2G46700 34.591 159 85 8 129 271 82 237 9.49e-12 67.0
MS.gene009824.t1 AT4G10010 30.097 206 122 9 10 206 162 354 9.78e-12 67.4
MS.gene009824.t1 AT5G49470 27.907 215 126 9 7 210 494 690 9.83e-12 67.4
MS.gene009824.t1 AT1G49160 26.573 286 186 12 4 278 27 299 1.10e-11 67.0
MS.gene009824.t1 AT2G40500 26.616 263 136 12 37 274 43 273 1.12e-11 65.9
MS.gene009824.t1 AT5G38210 28.230 209 121 9 10 206 376 567 1.16e-11 67.4
MS.gene009824.t1 AT2G18170 26.786 224 126 11 2 208 30 232 1.27e-11 66.2
MS.gene009824.t1 AT5G38210 28.230 209 121 9 10 206 358 549 1.31e-11 67.0
MS.gene009824.t1 AT3G46930 30.814 172 93 7 51 214 252 405 1.67e-11 66.2
MS.gene009824.t1 AT3G46930 30.814 172 93 7 51 214 252 405 1.72e-11 66.2
MS.gene009824.t1 AT3G46930 31.210 157 89 6 66 214 225 370 1.82e-11 65.9
MS.gene009824.t1 AT3G07980 40.000 90 52 2 176 264 1 89 1.97e-11 66.6
MS.gene009824.t1 AT5G50860 28.502 207 124 7 10 206 120 312 2.00e-11 66.2
MS.gene009824.t1 AT4G38470 34.426 122 75 4 94 210 365 486 2.11e-11 66.2
MS.gene009824.t1 AT4G38470 34.426 122 75 4 94 210 365 486 2.20e-11 66.2
MS.gene009824.t1 AT4G38470 34.426 122 75 4 94 210 365 486 2.54e-11 65.9
MS.gene009824.t1 AT1G08720 28.163 245 147 12 10 242 675 902 2.98e-11 66.2
MS.gene009824.t1 AT4G24480 29.108 213 120 11 10 209 675 869 3.00e-11 66.2
MS.gene009824.t1 AT5G39420 28.922 204 127 7 10 206 111 303 3.06e-11 65.9
MS.gene009824.t1 AT4G24480 29.108 213 120 11 10 209 675 869 3.08e-11 66.2
MS.gene009824.t1 AT5G50860 28.502 207 124 7 10 206 120 312 3.13e-11 65.9
MS.gene009824.t1 AT5G38210 28.230 209 121 9 10 206 364 555 3.29e-11 65.9
MS.gene009824.t1 AT1G18160 27.236 246 151 12 10 244 721 949 6.91e-11 65.1

Find 91 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACGGGAATGTGGGTAAAT+TGG 0.191573 5.3:+56739130 MS.gene009824:CDS
GTCGCTAAGCTAGCTGATTT+TGG 0.214288 5.3:+56738589 MS.gene009824:CDS
AAAATCACCGTGGGAGGATC+GGG 0.321932 5.3:+56738759 MS.gene009824:CDS
TTCGATACGTTGAGTCGAAT+TGG 0.354482 5.3:+56738784 MS.gene009824:CDS
TCTTCTTCGCCTCACGTGAT+TGG 0.355187 5.3:+56738337 MS.gene009824:CDS
GAATCCGATGTCTGGTCATT+AGG 0.357525 5.3:+56738709 MS.gene009824:CDS
ATCTTCGCCACGTTGCGTCT+TGG 0.386398 5.3:+56738996 MS.gene009824:CDS
GTTGTTCATTGCGATGTTAA+AGG 0.396505 5.3:+56738541 MS.gene009824:CDS
AAAACAGAGCAATGGCTTCA+TGG 0.409629 5.3:+56738134 None:intergenic
TATGAGGGTAGAAGAGGAAA+TGG 0.415348 5.3:+56739284 MS.gene009824:CDS
GGAGTTTCCGAGCGGCTTAT+CGG 0.417236 5.3:+56738825 MS.gene009824:CDS
AACGGGAATGTGGGTAAATT+GGG 0.421123 5.3:+56739131 MS.gene009824:CDS
AATGACCAGACATCGGATTC+CGG 0.433584 5.3:-56738706 None:intergenic
TAGAAGAGGAAATGGAAGTA+GGG 0.444033 5.3:+56739292 MS.gene009824:CDS
TGTATTGGTAAAGGAGCGTT+TGG 0.445658 5.3:+56738169 MS.gene009824:CDS
GAAAATCACCGTGGGAGGAT+CGG 0.448179 5.3:+56738758 MS.gene009824:CDS
CTGAGGATTGGATTGAAGTA+AGG 0.448286 5.3:+56739157 MS.gene009824:CDS
GGGAAATTGAGAATGTTATG+AGG 0.448503 5.3:+56739268 MS.gene009824:CDS
GTAGAAGAGGAAATGGAAGT+AGG 0.450285 5.3:+56739291 MS.gene009824:CDS
TCCAACTCAGTTAGAAGCGT+TGG 0.454152 5.3:+56738267 MS.gene009824:CDS
AGAATTGGTAAATTAGCAAC+GGG 0.467157 5.3:+56739114 MS.gene009824:CDS
TAACGTTATTCTTACGGTTG+CGG 0.473839 5.3:-56739374 None:intergenic
AAACAGAGCAATGGCTTCAT+GGG 0.485195 5.3:+56738135 None:intergenic
AAGGACCGGAATCCGATGTC+TGG 0.485508 5.3:+56738701 MS.gene009824:CDS
TAAATTGGGAAACTGAGGAT+TGG 0.499250 5.3:+56739145 MS.gene009824:CDS
GTAAATTAGCAACGGGAATG+TGG 0.506552 5.3:+56739121 MS.gene009824:CDS
AAGCTGAAGCAGGGGTAACA+TGG 0.507968 5.3:+56739247 MS.gene009824:CDS
GTTTGAGGCGTGATCGGAGC+CGG 0.508654 5.3:+56738875 MS.gene009824:CDS
GAGGGTGAAGAAGCTGAAGC+AGG 0.509445 5.3:+56739237 MS.gene009824:CDS
TGGGTGAGAGGCAAGTGTAT+TGG 0.519211 5.3:+56738154 MS.gene009824:CDS
CGGAAACTCCGGTAACTCAT+CGG 0.523323 5.3:-56738812 None:intergenic
CTACACTTGGAGTACATGCC+AGG 0.524387 5.3:+56738415 MS.gene009824:CDS
GGCGTGATCGGAGCCGGAGA+TGG 0.532984 5.3:+56738881 MS.gene009824:CDS
AGAAGTGTTTGAGGCGTGAT+CGG 0.534170 5.3:+56738869 MS.gene009824:CDS
CGAGCGGCTTATCGGAGCAC+GGG 0.537951 5.3:+56738833 MS.gene009824:CDS
TCCGATGTGGATGGCGCCGG+AGG 0.539694 5.3:+56738660 MS.gene009824:CDS
GGCGCCGGAGGTGATTCGTC+GGG 0.540485 5.3:+56738672 MS.gene009824:CDS
AGAGGCAAGTGTATTGGTAA+AGG 0.540728 5.3:+56738160 MS.gene009824:CDS
AAGTCCGATGTGGATGGCGC+CGG 0.542809 5.3:+56738657 MS.gene009824:CDS
TCCAACGCTTCTAACTGAGT+TGG 0.544913 5.3:-56738268 None:intergenic
ATTTCAGCGACGGTGCCACC+TGG 0.547774 5.3:-56738433 None:intergenic
GCTGATCACACCTCCATCTC+CGG 0.549346 5.3:-56738894 None:intergenic
GAATGTTATGAGGGTAGAAG+AGG 0.549625 5.3:+56739278 MS.gene009824:CDS
TGAGGATTGGATTGAAGTAA+GGG 0.553676 5.3:+56739158 MS.gene009824:CDS
AATGGAAGTAGGGACTAGTT+CGG 0.554606 5.3:+56739302 MS.gene009824:CDS
AAAGGGTAAAACGGGAAATG+TGG 0.554899 5.3:+56739343 MS.gene009824:CDS
CACCGGAAAATCACCGTGGG+AGG 0.557486 5.3:+56738753 MS.gene009824:CDS
GGAAATTGAGAATGTTATGA+GGG 0.558045 5.3:+56739269 MS.gene009824:CDS
GATTCAACAACGCGATCACA+CGG 0.564762 5.3:-56738976 None:intergenic
AGTTAGTTAGAAACTTCGCC+TGG 0.565192 5.3:+56738479 MS.gene009824:CDS
TAGAATTGGTAAATTAGCAA+CGG 0.566448 5.3:+56739113 MS.gene009824:CDS
GATAAGCCGCTCGGAAACTC+CGG 0.566708 5.3:-56738823 None:intergenic
AGCACGGTTGATTTCAGCGA+CGG 0.572198 5.3:-56738443 None:intergenic
TGGCGCCGGAGGTGATTCGT+CGG 0.573449 5.3:+56738671 MS.gene009824:CDS
GTGATTCGTCGGGAGTATCA+AGG 0.573821 5.3:+56738682 MS.gene009824:CDS
TACTCCCGACGAATCACCTC+CGG 0.576507 5.3:-56738676 None:intergenic
AGGGTGAAGAAGCTGAAGCA+GGG 0.581560 5.3:+56739238 MS.gene009824:CDS
CCGAGCGGCTTATCGGAGCA+CGG 0.584497 5.3:+56738832 MS.gene009824:CDS
GGCGAAGATGTCACGTGCGA+AGG 0.586709 5.3:+56738367 MS.gene009824:CDS
TAAATTAGCAACGGGAATGT+GGG 0.594393 5.3:+56739122 MS.gene009824:CDS
GTGGGTAAATTGGGAAACTG+AGG 0.594904 5.3:+56739140 MS.gene009824:CDS
TGCTGAAGCAGCTGATCACA+CGG 0.595481 5.3:-56738940 None:intergenic
CCGTGCTCCGATAAGCCGCT+CGG 0.596791 5.3:-56738832 None:intergenic
TCGTCGGGAGTATCAAGGAC+CGG 0.599061 5.3:+56738687 MS.gene009824:CDS
ACGTGGAAGTCCGATGTGGA+TGG 0.600502 5.3:+56738651 MS.gene009824:CDS
TTACGTGATGTTCACGCGCG+TGG 0.601631 5.3:+56738517 MS.gene009824:CDS
GTGATCGGAGCCGGAGATGG+AGG 0.603664 5.3:+56738884 MS.gene009824:CDS
GTCGTTTAAGAATCTACACT+TGG 0.604687 5.3:+56738402 MS.gene009824:CDS
AGCTGAAGCAGGGGTAACAT+GGG 0.613405 5.3:+56739248 MS.gene009824:CDS
ACCTCCGGCGCCATCCACAT+CGG 0.618743 5.3:-56738661 None:intergenic
GGAAGAAACGTTCTCATCGG+TGG 0.619893 5.3:+56738562 MS.gene009824:CDS
TCGAATCCCCGATCCTCCCA+CGG 0.623067 5.3:-56738766 None:intergenic
AAATGAAGAGTGTGAGTGTG+AGG 0.623413 5.3:+56739218 MS.gene009824:CDS
AAAGGAAGAAACGTTCTCAT+CGG 0.623735 5.3:+56738559 MS.gene009824:CDS
TGGTACTTCACATTCACCAC+CGG 0.626734 5.3:-56738629 None:intergenic
TGAAATCAACCGTGCTGACG+TGG 0.630270 5.3:+56738450 MS.gene009824:CDS
GCAATGGCTTCATGGGTGAG+AGG 0.631234 5.3:+56738142 None:intergenic
AAATCACCGTGGGAGGATCG+GGG 0.632690 5.3:+56738760 MS.gene009824:CDS
AAAATCAGCTAGCTTAGCGA+CGG 0.645647 5.3:-56738587 None:intergenic
TAACGCGTTAACTAAACACC+AGG 0.652213 5.3:-56738497 None:intergenic
AATGAAGAGTGTGAGTGTGA+GGG 0.654734 5.3:+56739219 MS.gene009824:CDS
TTTCACCGGAAAATCACCGT+GGG 0.666010 5.3:+56738750 MS.gene009824:CDS
GGGTGAAGAAGCTGAAGCAG+GGG 0.671460 5.3:+56739239 MS.gene009824:CDS
TACCACGTGGAAGTCCGATG+TGG 0.671758 5.3:+56738647 MS.gene009824:CDS
CCGAGAAAACCAATCACGTG+AGG 0.682207 5.3:-56738346 None:intergenic
ACATCCTAATGACCAGACAT+CGG 0.690193 5.3:-56738713 None:intergenic
CACTTGGAGTACATGCCAGG+TGG 0.691164 5.3:+56738418 MS.gene009824:CDS
TCACAATCCAAGACGCAACG+TGG 0.714280 5.3:-56739003 None:intergenic
ATCCACATCGGACTTCCACG+TGG 0.755989 5.3:-56738649 None:intergenic
GAGTTACCGGAGTTTCCGAG+CGG 0.756140 5.3:+56738817 MS.gene009824:CDS
GGTGAATGTGAAGTACCACG+TGG 0.855288 5.3:+56738634 MS.gene009824:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTCAGTTAAAAATAGAAT+TGG + chr5.3:56739099-56739118 MS.gene009824:CDS 15.0%
!!! AATTTTAATAGGAATATTAG+TGG + chr5.3:56739453-56739472 MS.gene009824:intron 15.0%
!!! AATATTGTGATTTTGATGAA+AGG + chr5.3:56739325-56739344 MS.gene009824:CDS 20.0%
!!! ATATTGTGATTTTGATGAAA+GGG + chr5.3:56739326-56739345 MS.gene009824:CDS 20.0%
!!! ATGAGATTAAGATTTTGAAA+CGG + chr5.3:56738293-56738312 MS.gene009824:CDS 20.0%
! TAGAATTGGTAAATTAGCAA+CGG + chr5.3:56739113-56739132 MS.gene009824:CDS 25.0%
!!! ATTTTGATGAAAGGGTAAAA+CGG + chr5.3:56739334-56739353 MS.gene009824:CDS 25.0%
AACCGTAAGAATAACGTTAT+AGG + chr5.3:56739378-56739397 MS.gene009824:intron 30.0%
AGAATTGGTAAATTAGCAAC+GGG + chr5.3:56739114-56739133 MS.gene009824:CDS 30.0%
CACCTATAACGTTATTCTTA+CGG - chr5.3:56739383-56739402 None:intergenic 30.0%
GGAAATTGAGAATGTTATGA+GGG + chr5.3:56739269-56739288 MS.gene009824:CDS 30.0%
! TTTTGATGAAAGGGTAAAAC+GGG + chr5.3:56739335-56739354 MS.gene009824:CDS 30.0%
AAAGGAAGAAACGTTCTCAT+CGG + chr5.3:56738559-56738578 MS.gene009824:CDS 35.0%
AATAACGTTATAGGTGGAAG+TGG + chr5.3:56739387-56739406 MS.gene009824:intron 35.0%
CGTAAGAATAACGTTATAGG+TGG + chr5.3:56739381-56739400 MS.gene009824:intron 35.0%
GGGAAATTGAGAATGTTATG+AGG + chr5.3:56739268-56739287 MS.gene009824:CDS 35.0%
GTCGTTTAAGAATCTACACT+TGG + chr5.3:56738402-56738421 MS.gene009824:CDS 35.0%
GTTGTTCATTGCGATGTTAA+AGG + chr5.3:56738541-56738560 MS.gene009824:CDS 35.0%
TAAATTAGCAACGGGAATGT+GGG + chr5.3:56739122-56739141 MS.gene009824:CDS 35.0%
TAAATTGGGAAACTGAGGAT+TGG + chr5.3:56739145-56739164 MS.gene009824:CDS 35.0%
TAACGTTATTCTTACGGTTG+CGG - chr5.3:56739377-56739396 None:intergenic 35.0%
TAGAAGAGGAAATGGAAGTA+GGG + chr5.3:56739292-56739311 MS.gene009824:CDS 35.0%
TGAGGATTGGATTGAAGTAA+GGG + chr5.3:56739158-56739177 MS.gene009824:CDS 35.0%
TGATCACACGGTAACAAAAA+TGG - chr5.3:56738931-56738950 None:intergenic 35.0%
! ACTGTGATTGAGATTTTCAC+CGG + chr5.3:56738736-56738755 MS.gene009824:CDS 35.0%
!! ACGGTTGGGGAAATTTTAAT+AGG + chr5.3:56739442-56739461 MS.gene009824:intron 35.0%
!!! AAGCGATTCTAAAGTTTTCG+CGG + chr5.3:56738216-56738235 MS.gene009824:CDS 35.0%
!!! ATTTTCTGGAGAAGTGTTTG+AGG + chr5.3:56738860-56738879 MS.gene009824:CDS 35.0%
AAAGGGTAAAACGGGAAATG+TGG + chr5.3:56739343-56739362 MS.gene009824:CDS 40.0%
AACGGGAATGTGGGTAAATT+GGG + chr5.3:56739131-56739150 MS.gene009824:CDS 40.0%
ACATCCTAATGACCAGACAT+CGG - chr5.3:56738716-56738735 None:intergenic 40.0%
AGTTAGTTAGAAACTTCGCC+TGG + chr5.3:56738479-56738498 MS.gene009824:CDS 40.0%
ATGTCGGTATAGATACGGTT+GGG + chr5.3:56739428-56739447 MS.gene009824:intron 40.0%
CGATCACACGGTAACAAAAA+TGG - chr5.3:56738967-56738986 None:intergenic 40.0%
CTGAGGATTGGATTGAAGTA+AGG + chr5.3:56739157-56739176 MS.gene009824:CDS 40.0%
GAATGTTATGAGGGTAGAAG+AGG + chr5.3:56739278-56739297 MS.gene009824:CDS 40.0%
GTAAATTAGCAACGGGAATG+TGG + chr5.3:56739121-56739140 MS.gene009824:CDS 40.0%
GTAGAAGAGGAAATGGAAGT+AGG + chr5.3:56739291-56739310 MS.gene009824:CDS 40.0%
TAACGCGTTAACTAAACACC+AGG - chr5.3:56738500-56738519 None:intergenic 40.0%
TATGAGGGTAGAAGAGGAAA+TGG + chr5.3:56739284-56739303 MS.gene009824:CDS 40.0%
TGGAGATGTCGGTATAGATA+CGG + chr5.3:56739423-56739442 MS.gene009824:intron 40.0%
TTATAGGTGGAAGTGGAAGT+TGG + chr5.3:56739394-56739413 MS.gene009824:intron 40.0%
TTCGATACGTTGAGTCGAAT+TGG + chr5.3:56738784-56738803 MS.gene009824:CDS 40.0%
! AAAATCAGCTAGCTTAGCGA+CGG - chr5.3:56738590-56738609 None:intergenic 40.0%
! AAATGAAGAGTGTGAGTGTG+AGG + chr5.3:56739218-56739237 MS.gene009824:CDS 40.0%
! AATGAAGAGTGTGAGTGTGA+GGG + chr5.3:56739219-56739238 MS.gene009824:CDS 40.0%
! AGAGGCAAGTGTATTGGTAA+AGG + chr5.3:56738160-56738179 MS.gene009824:CDS 40.0%
! TGGATTTTCCGATGAGTTAC+CGG + chr5.3:56738804-56738823 MS.gene009824:CDS 40.0%
!! AATGGAAGTAGGGACTAGTT+CGG + chr5.3:56739302-56739321 MS.gene009824:CDS 40.0%
!! TGTATTGGTAAAGGAGCGTT+TGG + chr5.3:56738169-56738188 MS.gene009824:CDS 40.0%
AATGACCAGACATCGGATTC+CGG - chr5.3:56738709-56738728 None:intergenic 45.0%
CAACGGGAATGTGGGTAAAT+TGG + chr5.3:56739130-56739149 MS.gene009824:CDS 45.0%
GAATCCGATGTCTGGTCATT+AGG + chr5.3:56738709-56738728 MS.gene009824:CDS 45.0%
GATGTCGGTATAGATACGGT+TGG + chr5.3:56739427-56739446 MS.gene009824:intron 45.0%
GATTCAACAACGCGATCACA+CGG - chr5.3:56738979-56738998 None:intergenic 45.0%
GTGGGTAAATTGGGAAACTG+AGG + chr5.3:56739140-56739159 MS.gene009824:CDS 45.0%
TCCAACGCTTCTAACTGAGT+TGG - chr5.3:56738271-56738290 None:intergenic 45.0%
TGGTACTTCACATTCACCAC+CGG - chr5.3:56738632-56738651 None:intergenic 45.0%
TGTCGGTATAGATACGGTTG+GGG + chr5.3:56739429-56739448 MS.gene009824:intron 45.0%
TTTCACCGGAAAATCACCGT+GGG + chr5.3:56738750-56738769 MS.gene009824:CDS 45.0%
! ACTTTTCATCCACGTCAGCA+CGG - chr5.3:56738462-56738481 None:intergenic 45.0%
! GGTTCAGCGATGGAATTTTC+CGG + chr5.3:56738610-56738629 MS.gene009824:CDS 45.0%
! TCCAACTCAGTTAGAAGCGT+TGG + chr5.3:56738267-56738286 MS.gene009824:CDS 45.0%
! TTTTCACCGGAAAATCACCG+TGG + chr5.3:56738749-56738768 MS.gene009824:CDS 45.0%
!! AGAAGTGTTTGAGGCGTGAT+CGG + chr5.3:56738869-56738888 MS.gene009824:CDS 45.0%
!! GTCGCTAAGCTAGCTGATTT+TGG + chr5.3:56738589-56738608 MS.gene009824:CDS 45.0%
!!! AGCTGATTTTGGTTCAGCGA+TGG + chr5.3:56738600-56738619 MS.gene009824:CDS 45.0%
!!! CCTCACGTGATTGGTTTTCT+CGG + chr5.3:56738346-56738365 MS.gene009824:CDS 45.0%
AAAATCACCGTGGGAGGATC+GGG + chr5.3:56738759-56738778 MS.gene009824:CDS 50.0%
AAGCTGAAGCAGGGGTAACA+TGG + chr5.3:56739247-56739266 MS.gene009824:CDS 50.0%
AGCTGAAGCAGGGGTAACAT+GGG + chr5.3:56739248-56739267 MS.gene009824:CDS 50.0%
AGGGTGAAGAAGCTGAAGCA+GGG + chr5.3:56739238-56739257 MS.gene009824:CDS 50.0%
CCGAGAAAACCAATCACGTG+AGG - chr5.3:56738349-56738368 None:intergenic 50.0%
CGGAAACTCCGGTAACTCAT+CGG - chr5.3:56738815-56738834 None:intergenic 50.0%
CTACACTTGGAGTACATGCC+AGG + chr5.3:56738415-56738434 MS.gene009824:CDS 50.0%
GAAAATCACCGTGGGAGGAT+CGG + chr5.3:56738758-56738777 MS.gene009824:CDS 50.0%
GGAAGAAACGTTCTCATCGG+TGG + chr5.3:56738562-56738581 MS.gene009824:CDS 50.0%
GTTGGTGTGGTTGGAGATGT+CGG + chr5.3:56739412-56739431 MS.gene009824:intron 50.0%
TCACAATCCAAGACGCAACG+TGG - chr5.3:56739006-56739025 None:intergenic 50.0%
TCTTCTTCGCCTCACGTGAT+TGG + chr5.3:56738337-56738356 MS.gene009824:CDS 50.0%
TGCTGAAGCAGCTGATCACA+CGG - chr5.3:56738907-56738926 None:intergenic 50.0%
TGGGTGAGAGGCAAGTGTAT+TGG + chr5.3:56738154-56738173 MS.gene009824:CDS 50.0%
! AGCACGGTTGATTTCAGCGA+CGG - chr5.3:56738446-56738465 None:intergenic 50.0%
! ATCCTCCCACGGTGATTTTC+CGG - chr5.3:56738758-56738777 None:intergenic 50.0%
! GGTGAATGTGAAGTACCACG+TGG + chr5.3:56738634-56738653 MS.gene009824:CDS 50.0%
! TCAGCGATGGAATTTTCCGG+TGG + chr5.3:56738613-56738632 MS.gene009824:CDS 50.0%
! TGAAATCAACCGTGCTGACG+TGG + chr5.3:56738450-56738469 MS.gene009824:CDS 50.0%
!! GAAGTGGAAGTTGGTGTGGT+TGG + chr5.3:56739403-56739422 MS.gene009824:intron 50.0%
!! GTGATTCGTCGGGAGTATCA+AGG + chr5.3:56738682-56738701 MS.gene009824:CDS 50.0%
AAATCACCGTGGGAGGATCG+GGG + chr5.3:56738760-56738779 MS.gene009824:CDS 55.0%
AAGGACCGGAATCCGATGTC+TGG + chr5.3:56738701-56738720 MS.gene009824:CDS 55.0%
ACGTGGAAGTCCGATGTGGA+TGG + chr5.3:56738651-56738670 MS.gene009824:CDS 55.0%
ATCCACATCGGACTTCCACG+TGG - chr5.3:56738652-56738671 None:intergenic 55.0%
ATCTTCGCCACGTTGCGTCT+TGG + chr5.3:56738996-56739015 MS.gene009824:CDS 55.0%
CACTTGGAGTACATGCCAGG+TGG + chr5.3:56738418-56738437 MS.gene009824:CDS 55.0%
GAGGGTGAAGAAGCTGAAGC+AGG + chr5.3:56739237-56739256 MS.gene009824:CDS 55.0%
GAGTTACCGGAGTTTCCGAG+CGG + chr5.3:56738817-56738836 MS.gene009824:CDS 55.0%
GATAAGCCGCTCGGAAACTC+CGG - chr5.3:56738826-56738845 None:intergenic 55.0%
GCTGATCACACCTCCATCTC+CGG - chr5.3:56738897-56738916 None:intergenic 55.0%
GGAGTTTCCGAGCGGCTTAT+CGG + chr5.3:56738825-56738844 MS.gene009824:CDS 55.0%
GGGTGAAGAAGCTGAAGCAG+GGG + chr5.3:56739239-56739258 MS.gene009824:CDS 55.0%
TACCACGTGGAAGTCCGATG+TGG + chr5.3:56738647-56738666 MS.gene009824:CDS 55.0%
TACTCCCGACGAATCACCTC+CGG - chr5.3:56738679-56738698 None:intergenic 55.0%
TTACGTGATGTTCACGCGCG+TGG + chr5.3:56738517-56738536 MS.gene009824:CDS 55.0%
! GGAGCACGGGAGAGATTTTC+TGG + chr5.3:56738846-56738865 MS.gene009824:CDS 55.0%
!! GGTGGAAGTGGAAGTTGGTG+TGG + chr5.3:56739399-56739418 MS.gene009824:intron 55.0%
!! TCGTCGGGAGTATCAAGGAC+CGG + chr5.3:56738687-56738706 MS.gene009824:CDS 55.0%
AAGTCCGATGTGGATGGCGC+CGG + chr5.3:56738657-56738676 MS.gene009824:CDS 60.0%
CACCGGAAAATCACCGTGGG+AGG + chr5.3:56738753-56738772 MS.gene009824:CDS 60.0%
GGCGAAGATGTCACGTGCGA+AGG + chr5.3:56738367-56738386 MS.gene009824:CDS 60.0%
TCGAATCCCCGATCCTCCCA+CGG - chr5.3:56738769-56738788 None:intergenic 60.0%
! GTTTGAGGCGTGATCGGAGC+CGG + chr5.3:56738875-56738894 MS.gene009824:CDS 60.0%
!! ATTTCAGCGACGGTGCCACC+TGG - chr5.3:56738436-56738455 None:intergenic 60.0%
ACCTCCGGCGCCATCCACAT+CGG - chr5.3:56738664-56738683 None:intergenic 65.0%
CCGAGCGGCTTATCGGAGCA+CGG + chr5.3:56738832-56738851 MS.gene009824:CDS 65.0%
CCGTGCTCCGATAAGCCGCT+CGG - chr5.3:56738835-56738854 None:intergenic 65.0%
CGAGCGGCTTATCGGAGCAC+GGG + chr5.3:56738833-56738852 MS.gene009824:CDS 65.0%
GTGATCGGAGCCGGAGATGG+AGG + chr5.3:56738884-56738903 MS.gene009824:CDS 65.0%
! TGGCGCCGGAGGTGATTCGT+CGG + chr5.3:56738671-56738690 MS.gene009824:CDS 65.0%
GGCGTGATCGGAGCCGGAGA+TGG + chr5.3:56738881-56738900 MS.gene009824:CDS 70.0%
! GGCGCCGGAGGTGATTCGTC+GGG + chr5.3:56738672-56738691 MS.gene009824:CDS 70.0%
! TCCGATGTGGATGGCGCCGG+AGG + chr5.3:56738660-56738679 MS.gene009824:CDS 70.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 56738145 56739516 56738145 ID=MS.gene009824
chr5.3 mRNA 56738145 56739516 56738145 ID=MS.gene009824.t1;Parent=MS.gene009824
chr5.3 exon 56738145 56739381 56738145 ID=MS.gene009824.t1.exon1;Parent=MS.gene009824.t1
chr5.3 CDS 56738145 56739381 56738145 ID=cds.MS.gene009824.t1;Parent=MS.gene009824.t1
chr5.3 exon 56739464 56739516 56739464 ID=MS.gene009824.t1.exon2;Parent=MS.gene009824.t1
chr5.3 CDS 56739464 56739516 56739464 ID=cds.MS.gene009824.t1;Parent=MS.gene009824.t1
Gene Sequence

>MS.gene009824

ATGGCTTCATGGGTGAGAGGCAAGTGTATTGGTAAAGGAGCGTTTGGCGTTGTGAATTTAGCTTATTCAAAAAGCGATTCTAAAGTTTTCGCGGTGAAATCAGTTGATACTAAAACTGCTCTTCCAACTCAGTTAGAAGCGTTGGAGAATGAGATTAAGATTTTGAAACGGTTATCTTCTTCTTATTCTTGTTCTTCTTCGCCTCACGTGATTGGTTTTCTCGGCGAAGATGTCACGTGCGAAGGAAATAAAACGTCGTCGTTTAAGAATCTACACTTGGAGTACATGCCAGGTGGCACCGTCGCTGAAATCAACCGTGCTGACGTGGATGAAAAGTTAGTTAGAAACTTCGCCTGGTGTTTAGTTAACGCGTTACGTGATGTTCACGCGCGTGGCGTTGTTCATTGCGATGTTAAAGGAAGAAACGTTCTCATCGGTGGTTCCGTCGCTAAGCTAGCTGATTTTGGTTCAGCGATGGAATTTTCCGGTGGTGAATGTGAAGTACCACGTGGAAGTCCGATGTGGATGGCGCCGGAGGTGATTCGTCGGGAGTATCAAGGACCGGAATCCGATGTCTGGTCATTAGGATGTACTGTGATTGAGATTTTCACCGGAAAATCACCGTGGGAGGATCGGGGATTCGATACGTTGAGTCGAATTGGATTTTCCGATGAGTTACCGGAGTTTCCGAGCGGCTTATCGGAGCACGGGAGAGATTTTCTGGAGAAGTGTTTGAGGCGTGATCGGAGCCGGAGATGGAGGTGTGATCAGCTGCTTCAGCATCCATTTTTGTTACCGTGTGATCAGCTGCTTCAGCATCCATTTTTGTTACCGTGTGATCGCGTTGTTGAATCTTCGCCACGTTGCGTCTTGGATTGTGAAGAAAACGAGTTTGAATTTGAATTTGAAGAAGAAAATGAAGTTAAGTTGAATAGTGATGAAGATGAAAATGAAAATTCAGTTAAAAATAGAATTGGTAAATTAGCAACGGGAATGTGGGTAAATTGGGAAACTGAGGATTGGATTGAAGTAAGGGCAATTTCGTCTGAACAAAAAGAAGAAGTAACAATCGAAAATGAAGAGTGTGAGTGTGAGGGTGAAGAAGCTGAAGCAGGGGTAACATGGGAAATTGAGAATGTTATGAGGGTAGAAGAGGAAATGGAAGTAGGGACTAGTTCGGAATATTGTGATTTTGATGAAAGGGTAAAACGGGAAATGTGGAGATTCAACCGCAACCGTAAGAATAACGTTATAGGTGGAAGTGGAAGTTGGTGTGGTTGGAGATGTCGGTATAGATACGGTTGGGGAAATTTTAATAGGAATATTAGTGGAATATTCAGCATTTGCACTTGTTGTGATAATTGTAAATTAA
Protein sequence

>MS.gene009824.t1

MASWVRGKCIGKGAFGVVNLAYSKSDSKVFAVKSVDTKTALPTQLEALENEIKILKRLSSSYSCSSSPHVIGFLGEDVTCEGNKTSSFKNLHLEYMPGGTVAEINRADVDEKLVRNFAWCLVNALRDVHARGVVHCDVKGRNVLIGGSVAKLADFGSAMEFSGGECEVPRGSPMWMAPEVIRREYQGPESDVWSLGCTVIEIFTGKSPWEDRGFDTLSRIGFSDELPEFPSGLSEHGRDFLEKCLRRDRSRRWRCDQLLQHPFLLPCDQLLQHPFLLPCDRVVESSPRCVLDCEENEFEFEFEEENEVKLNSDEDENENSVKNRIGKLATGMWVNWETEDWIEVRAISSEQKEEVTIENEECECEGEEAEAGVTWEIENVMRVEEEMEVGTSSEYCDFDERVKREMWRFNRNRILVEYSAFALVVIIVN