Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009867.t1 | AES98603.1 | 89.1 | 274 | 30 | 0 | 1 | 274 | 1 | 274 | 9.00E-141 | 509.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009867.t1 | Q8L3W1 | 31.9 | 339 | 140 | 11 | 21 | 272 | 6 | 340 | 1.8e-28 | 127.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009867.t1 | G7KE59 | 89.1 | 274 | 30 | 0 | 1 | 274 | 1 | 274 | 6.5e-141 | 509.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene009867.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009867.t1 | MTR_5g070440 | 89.051 | 274 | 30 | 0 | 1 | 274 | 1 | 274 | 0.0 | 513 |
| MS.gene009867.t1 | MTR_3g005490 | 71.636 | 275 | 67 | 2 | 1 | 274 | 1 | 265 | 1.06e-140 | 396 |
| MS.gene009867.t1 | MTR_3g005480 | 68.613 | 274 | 74 | 2 | 1 | 272 | 1 | 264 | 2.33e-132 | 375 |
| MS.gene009867.t1 | MTR_3g005420 | 66.795 | 259 | 86 | 0 | 16 | 274 | 284 | 542 | 2.28e-120 | 355 |
| MS.gene009867.t1 | MTR_3g005420 | 56.929 | 267 | 91 | 3 | 1 | 265 | 20 | 264 | 1.09e-93 | 286 |
| MS.gene009867.t1 | MTR_3g005460 | 65.543 | 267 | 84 | 2 | 16 | 274 | 257 | 523 | 1.55e-117 | 347 |
| MS.gene009867.t1 | MTR_3g005460 | 54.887 | 266 | 93 | 3 | 1 | 262 | 1 | 243 | 6.56e-90 | 276 |
| MS.gene009867.t1 | MTR_3g005420 | 56.929 | 267 | 91 | 3 | 1 | 265 | 1 | 245 | 2.41e-94 | 286 |
| MS.gene009867.t1 | MTR_3g005420 | 55.598 | 259 | 80 | 1 | 16 | 274 | 265 | 488 | 1.64e-90 | 276 |
| MS.gene009867.t1 | MTR_3g005495 | 54.406 | 261 | 97 | 7 | 10 | 266 | 231 | 473 | 3.50e-82 | 255 |
| MS.gene009867.t1 | MTR_3g005495 | 51.055 | 237 | 85 | 3 | 36 | 271 | 28 | 234 | 8.15e-72 | 228 |
| MS.gene009867.t1 | MTR_3g005440 | 59.716 | 211 | 78 | 1 | 16 | 226 | 237 | 440 | 1.16e-79 | 247 |
| MS.gene009867.t1 | MTR_3g005440 | 49.785 | 233 | 66 | 3 | 35 | 265 | 34 | 217 | 8.84e-62 | 201 |
| MS.gene009867.t1 | MTR_1g015350 | 38.462 | 247 | 68 | 7 | 1 | 244 | 1 | 166 | 2.07e-34 | 122 |
| MS.gene009867.t1 | MTR_1g034240 | 48.485 | 99 | 51 | 0 | 21 | 119 | 7 | 105 | 1.82e-29 | 115 |
| MS.gene009867.t1 | MTR_7g050560 | 28.276 | 290 | 162 | 7 | 20 | 271 | 12 | 293 | 3.07e-29 | 113 |
| MS.gene009867.t1 | MTR_3g061310 | 28.269 | 283 | 158 | 7 | 21 | 267 | 12 | 285 | 2.81e-28 | 109 |
| MS.gene009867.t1 | MTR_7g050580 | 28.763 | 299 | 161 | 9 | 14 | 271 | 6 | 293 | 1.07e-26 | 106 |
| MS.gene009867.t1 | MTR_3g098790 | 26.667 | 300 | 175 | 5 | 14 | 271 | 6 | 302 | 7.85e-26 | 104 |
| MS.gene009867.t1 | MTR_4g068320 | 36.025 | 161 | 97 | 2 | 18 | 173 | 3 | 162 | 2.06e-25 | 104 |
| MS.gene009867.t1 | MTR_4g068320 | 32.877 | 146 | 73 | 5 | 134 | 271 | 263 | 391 | 1.43e-11 | 64.7 |
| MS.gene009867.t1 | MTR_1g034210 | 48.889 | 90 | 46 | 0 | 21 | 110 | 7 | 96 | 1.60e-24 | 100 |
| MS.gene009867.t1 | MTR_3g061320 | 27.437 | 277 | 164 | 6 | 20 | 267 | 11 | 279 | 1.87e-24 | 99.4 |
| MS.gene009867.t1 | MTR_1g034210 | 48.889 | 90 | 46 | 0 | 21 | 110 | 7 | 96 | 3.51e-24 | 100 |
| MS.gene009867.t1 | MTR_3g061370 | 25.862 | 290 | 161 | 5 | 18 | 267 | 6 | 281 | 8.02e-24 | 97.8 |
| MS.gene009867.t1 | MTR_3g061340 | 26.838 | 272 | 165 | 6 | 21 | 267 | 12 | 274 | 2.54e-23 | 96.3 |
| MS.gene009867.t1 | MTR_8g103940 | 25.000 | 300 | 166 | 7 | 21 | 268 | 39 | 331 | 2.70e-23 | 99.0 |
| MS.gene009867.t1 | MTR_7g050710 | 26.910 | 301 | 169 | 8 | 20 | 271 | 12 | 310 | 1.76e-22 | 95.1 |
| MS.gene009867.t1 | MTR_3g061350 | 25.874 | 286 | 160 | 7 | 21 | 267 | 12 | 284 | 4.76e-22 | 93.2 |
| MS.gene009867.t1 | MTR_0152s0100 | 41.509 | 106 | 61 | 1 | 167 | 272 | 8 | 112 | 4.80e-21 | 86.3 |
| MS.gene009867.t1 | MTR_0152s0100 | 41.509 | 106 | 61 | 1 | 167 | 272 | 8 | 112 | 4.80e-21 | 86.3 |
| MS.gene009867.t1 | MTR_5g044670 | 24.422 | 303 | 173 | 6 | 17 | 271 | 12 | 306 | 1.31e-20 | 90.1 |
| MS.gene009867.t1 | MTR_7g050720 | 25.806 | 310 | 166 | 10 | 20 | 268 | 9 | 315 | 3.15e-20 | 88.6 |
| MS.gene009867.t1 | MTR_1g035460 | 25.338 | 296 | 147 | 7 | 37 | 268 | 2 | 287 | 3.38e-20 | 89.7 |
| MS.gene009867.t1 | MTR_7g050590 | 25.862 | 290 | 152 | 7 | 37 | 271 | 2 | 283 | 3.97e-20 | 88.2 |
| MS.gene009867.t1 | MTR_1g108780 | 24.399 | 291 | 152 | 8 | 36 | 269 | 12 | 291 | 3.74e-19 | 87.0 |
| MS.gene009867.t1 | MTR_3g061290 | 40.000 | 100 | 58 | 1 | 20 | 119 | 11 | 108 | 2.40e-17 | 78.6 |
| MS.gene009867.t1 | MTR_3g061330 | 35.172 | 145 | 87 | 3 | 21 | 163 | 12 | 151 | 4.50e-17 | 79.0 |
| MS.gene009867.t1 | MTR_3g061220 | 38.384 | 99 | 46 | 2 | 21 | 119 | 12 | 95 | 7.63e-15 | 69.7 |
| MS.gene009867.t1 | MTR_4g119990 | 25.773 | 291 | 167 | 8 | 20 | 261 | 14 | 304 | 1.18e-14 | 73.6 |
| MS.gene009867.t1 | MTR_6g043890 | 31.690 | 142 | 87 | 3 | 20 | 154 | 14 | 152 | 4.36e-14 | 71.6 |
| MS.gene009867.t1 | MTR_7g050640 | 30.631 | 111 | 77 | 0 | 14 | 124 | 6 | 116 | 3.78e-13 | 65.1 |
| MS.gene009867.t1 | MTR_1g021270 | 30.928 | 97 | 66 | 1 | 20 | 116 | 15 | 110 | 2.80e-12 | 67.0 |
| MS.gene009867.t1 | MTR_1g035440 | 30.769 | 130 | 80 | 2 | 20 | 139 | 14 | 143 | 3.71e-12 | 65.1 |
| MS.gene009867.t1 | MTR_1g021320 | 21.923 | 260 | 151 | 8 | 20 | 252 | 24 | 258 | 4.39e-12 | 66.6 |
| MS.gene009867.t1 | MTR_1g021320 | 34.737 | 95 | 60 | 2 | 20 | 114 | 183 | 275 | 5.14e-11 | 63.2 |
| MS.gene009867.t1 | MTR_1g021400 | 32.632 | 95 | 64 | 0 | 20 | 114 | 29 | 123 | 5.63e-12 | 65.5 |
| MS.gene009867.t1 | MTR_1g021435 | 33.684 | 95 | 63 | 0 | 20 | 114 | 21 | 115 | 8.26e-11 | 62.0 |
| MS.gene009867.t1 | MTR_1g021410 | 36.709 | 79 | 50 | 0 | 33 | 111 | 34 | 112 | 9.90e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009867.t1 | AT3G18990 | 48.485 | 99 | 51 | 0 | 21 | 119 | 6 | 104 | 6.46e-26 | 104 |
| MS.gene009867.t1 | AT3G18990 | 32.000 | 150 | 88 | 5 | 130 | 273 | 200 | 341 | 1.52e-11 | 64.3 |
| MS.gene009867.t1 | AT3G18990 | 48.485 | 99 | 51 | 0 | 21 | 119 | 6 | 104 | 1.25e-25 | 104 |
| MS.gene009867.t1 | AT3G18990 | 31.788 | 151 | 89 | 5 | 130 | 274 | 200 | 342 | 1.83e-11 | 63.9 |
| MS.gene009867.t1 | AT4G01580 | 40.741 | 108 | 64 | 0 | 14 | 121 | 23 | 130 | 1.56e-20 | 87.0 |
| MS.gene009867.t1 | AT3G18960 | 38.889 | 108 | 66 | 0 | 14 | 121 | 23 | 130 | 4.23e-19 | 83.2 |
| MS.gene009867.t1 | AT3G18960 | 38.889 | 108 | 66 | 0 | 14 | 121 | 23 | 130 | 5.59e-19 | 83.2 |
| MS.gene009867.t1 | AT1G49475 | 38.793 | 116 | 70 | 1 | 14 | 129 | 27 | 141 | 1.82e-18 | 81.3 |
| MS.gene009867.t1 | AT3G18960 | 38.636 | 88 | 54 | 0 | 34 | 121 | 6 | 93 | 2.20e-13 | 67.0 |
| MS.gene009867.t1 | AT4G31690 | 24.590 | 244 | 156 | 8 | 19 | 257 | 12 | 232 | 2.27e-12 | 66.2 |
| MS.gene009867.t1 | AT4G31640 | 25.287 | 261 | 156 | 11 | 18 | 268 | 11 | 242 | 1.42e-11 | 64.3 |
| MS.gene009867.t1 | AT1G49480 | 32.919 | 161 | 82 | 6 | 123 | 273 | 82 | 226 | 1.88e-11 | 62.8 |
| MS.gene009867.t1 | AT1G49480 | 32.919 | 161 | 82 | 6 | 123 | 273 | 82 | 226 | 1.88e-11 | 62.8 |
| MS.gene009867.t1 | AT1G49480 | 32.919 | 161 | 82 | 6 | 123 | 273 | 82 | 226 | 1.88e-11 | 62.8 |
Find 52 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGCCCTCCATGAGAATTT+TGG | 0.201758 | 5.3:+56116532 | None:intergenic |
| AGTGAAGCTTACTATTTCTT+TGG | 0.231343 | 5.3:+56118211 | None:intergenic |
| GATGAATTTATATCAAGATT+TGG | 0.269670 | 5.3:-56117116 | MS.gene009867:CDS |
| CAACGAAAATAAGGGTTGTT+TGG | 0.270085 | 5.3:+56116714 | None:intergenic |
| TACTATTTCTTTGGAATGAA+TGG | 0.303913 | 5.3:+56118220 | None:intergenic |
| AGATGGTCGTGTCTGGAAAA+TGG | 0.306967 | 5.3:-56117057 | MS.gene009867:CDS |
| TTATAGGAACATTTGGCTTC+AGG | 0.316899 | 5.3:+56116559 | None:intergenic |
| ATTATCCTAGTTCTAGAAAA+AGG | 0.327263 | 5.3:-56116833 | MS.gene009867:CDS |
| ATGAATTTATATCAAGATTT+GGG | 0.336114 | 5.3:-56117115 | MS.gene009867:CDS |
| ATGAATGGGTGAGGGAAGTA+TGG | 0.359095 | 5.3:+56118235 | None:intergenic |
| TCCCTTCATATTTGAAAGAA+AGG | 0.361097 | 5.3:+56116949 | None:intergenic |
| TGGAGCTTTATAGGAACATT+TGG | 0.363518 | 5.3:+56116552 | None:intergenic |
| AACGAAAATAAGGGTTGTTT+GGG | 0.366185 | 5.3:+56116715 | None:intergenic |
| GAATACTATTCTATAGGATA+TGG | 0.373789 | 5.3:-56116978 | MS.gene009867:CDS |
| ATGTGAGAGGCGTGGGAAAA+AGG | 0.385584 | 5.3:-56116796 | MS.gene009867:CDS |
| TTCCTTTCTTTCAAATATGA+AGG | 0.389522 | 5.3:-56116951 | MS.gene009867:CDS |
| AATCTTGATATAAATTCATC+TGG | 0.413169 | 5.3:+56117119 | None:intergenic |
| CTGTTCCAGATGGTCGTGTC+TGG | 0.416931 | 5.3:-56117064 | MS.gene009867:CDS |
| GTTGTTTGGGTTGAGTTCCT+TGG | 0.432159 | 5.3:+56116728 | None:intergenic |
| ACTATTTCTTTGGAATGAAT+GGG | 0.437997 | 5.3:+56118221 | None:intergenic |
| TTTGTAGAATACTATTCTAT+AGG | 0.438154 | 5.3:-56116984 | MS.gene009867:CDS |
| GGAGGGCAGTGGGAAGTGTT+TGG | 0.442028 | 5.3:-56116519 | MS.gene009867:CDS |
| TTCTTTGGAATGAATGGGTG+AGG | 0.464859 | 5.3:+56118226 | None:intergenic |
| CTCGCCGGCGAAAGTGTGTC+CGG | 0.493553 | 5.3:-56118298 | MS.gene009867:CDS |
| CCTTCTCCGGTGATGATGTC+CGG | 0.498771 | 5.3:+56118279 | None:intergenic |
| ATAAAGCTCCAAAATTCTCA+TGG | 0.500218 | 5.3:-56116540 | MS.gene009867:CDS |
| AAAATTCTCATGGAGGGCAG+TGG | 0.508854 | 5.3:-56116530 | MS.gene009867:CDS |
| TCCTTTCTTTCAAATATGAA+GGG | 0.512330 | 5.3:-56116950 | MS.gene009867:CDS |
| TTGCAACAATGCAGCCTCGC+CGG | 0.517685 | 5.3:-56118313 | None:intergenic |
| CCGGACATCATCACCGGAGA+AGG | 0.524281 | 5.3:-56118279 | MS.gene009867:CDS |
| TCTTTGGAATGAATGGGTGA+GGG | 0.542125 | 5.3:+56118227 | None:intergenic |
| TTGAAACATGTGAGAGGCGT+GGG | 0.548958 | 5.3:-56116803 | MS.gene009867:CDS |
| TTTCGTTGCAAAATCGTCAA+GGG | 0.551442 | 5.3:-56116699 | MS.gene009867:CDS |
| AAGAGTAGAGGATGCTGCCA+AGG | 0.559277 | 5.3:-56116745 | MS.gene009867:CDS |
| AGCTCCAAAATTCTCATGGA+GGG | 0.568287 | 5.3:-56116536 | MS.gene009867:CDS |
| ATGTCCGGACACACTTTCGC+CGG | 0.577646 | 5.3:+56118294 | None:intergenic |
| GTGTGTCCGGACATCATCAC+CGG | 0.579924 | 5.3:-56118285 | MS.gene009867:CDS |
| AAATTCTCATGGAGGGCAGT+GGG | 0.584828 | 5.3:-56116529 | MS.gene009867:CDS |
| TTCAAAACTTCAAGTACCAA+CGG | 0.586316 | 5.3:-56116870 | MS.gene009867:CDS |
| ATCAGCAATGCAAATAGTGA+GGG | 0.596191 | 5.3:-56116475 | MS.gene009867:CDS |
| ATATGCTTCTAAAAGAGTAG+AGG | 0.611088 | 5.3:-56116757 | MS.gene009867:CDS |
| GTTGAAACATGTGAGAGGCG+TGG | 0.612877 | 5.3:-56116804 | MS.gene009867:CDS |
| GCTACAATTACTGTTCCAGA+TGG | 0.621864 | 5.3:-56117074 | MS.gene009867:CDS |
| CATCAGCAATGCAAATAGTG+AGG | 0.629339 | 5.3:-56116476 | MS.gene009867:CDS |
| AAGCTCCAAAATTCTCATGG+AGG | 0.639241 | 5.3:-56116537 | MS.gene009867:CDS |
| GTGTGTTTGAGCTGATCAAG+AGG | 0.642202 | 5.3:-56116404 | MS.gene009867:CDS |
| AGGGACAACAAACTGTCACA+TGG | 0.650637 | 5.3:-56116435 | MS.gene009867:CDS |
| AAAAGTCACAATGTTTCGTG+CGG | 0.653466 | 5.3:-56116367 | MS.gene009867:CDS |
| CGGACACACTTTCGCCGGCG+AGG | 0.660589 | 5.3:+56118299 | None:intergenic |
| ACAAGGTTGAAACATGTGAG+AGG | 0.686529 | 5.3:-56116809 | MS.gene009867:CDS |
| AATCGTCAAGGGAAAATATG+CGG | 0.692781 | 5.3:-56116688 | MS.gene009867:intron |
| TCAGCAATGCAAATAGTGAG+GGG | 0.699768 | 5.3:-56116474 | MS.gene009867:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAATTTATATCAAGATTT+GGG | - | chr5.3:56117540-56117559 | MS.gene009867:intron | 15.0% |
| !! | CATATACATAAAATTTATGT+TGG | + | chr5.3:56117349-56117368 | None:intergenic | 15.0% |
| !!! | AAAATTGATTTTGACATATT+TGG | - | chr5.3:56116737-56116756 | MS.gene009867:CDS | 15.0% |
| !!! | ATAAATTCTAATTTGAAGTT+AGG | + | chr5.3:56117296-56117315 | None:intergenic | 15.0% |
| !!! | ATAATAAAAGTACAAAACAA+GGG | + | chr5.3:56116476-56116495 | None:intergenic | 15.0% |
| !! | AATCTTGATATAAATTCATC+TGG | + | chr5.3:56117539-56117558 | None:intergenic | 20.0% |
| !! | ATTAAATTCTAACTTCAAGT+TGG | + | chr5.3:56116804-56116823 | None:intergenic | 20.0% |
| !! | CCAAAAAAAAAAAGTCAAAA+AGG | + | chr5.3:56116567-56116586 | None:intergenic | 20.0% |
| !! | CTTGAAGTTAGAATTTAATT+TGG | - | chr5.3:56116805-56116824 | MS.gene009867:CDS | 20.0% |
| !! | GATGAATTTATATCAAGATT+TGG | - | chr5.3:56117539-56117558 | MS.gene009867:intron | 20.0% |
| !! | TTTGTAGAATACTATTCTAT+AGG | - | chr5.3:56117671-56117690 | MS.gene009867:intron | 20.0% |
| !!! | CATAATAAAAGTACAAAACA+AGG | + | chr5.3:56116477-56116496 | None:intergenic | 20.0% |
| !!! | CCTTTTTGACTTTTTTTTTT+TGG | - | chr5.3:56116564-56116583 | MS.gene009867:CDS | 20.0% |
| ! | AATCACTTTCAATTCAACTA+AGG | + | chr5.3:56116877-56116896 | None:intergenic | 25.0% |
| ! | ATAATTAACATACTGCACAA+TGG | + | chr5.3:56118059-56118078 | None:intergenic | 25.0% |
| ! | ATCACTTTCAATTCAACTAA+GGG | + | chr5.3:56116876-56116895 | None:intergenic | 25.0% |
| ! | CATACTTTACTTAGTATGTT+TGG | - | chr5.3:56116905-56116924 | MS.gene009867:CDS | 25.0% |
| ! | GAATACTATTCTATAGGATA+TGG | - | chr5.3:56117677-56117696 | MS.gene009867:intron | 25.0% |
| ! | TCCTTTCTTTCAAATATGAA+GGG | - | chr5.3:56117705-56117724 | MS.gene009867:intron | 25.0% |
| ! | TTCCTTTCTTTCAAATATGA+AGG | - | chr5.3:56117704-56117723 | MS.gene009867:intron | 25.0% |
| !! | GGGATTTTCTATATTTCAAA+GGG | - | chr5.3:56118201-56118220 | MS.gene009867:intron | 25.0% |
| !! | TCAGTGTTTCTTTTATTCAA+TGG | - | chr5.3:56116626-56116645 | MS.gene009867:intron | 25.0% |
| !!! | ACTATTTCTTTGGAATGAAT+GGG | + | chr5.3:56116437-56116456 | None:intergenic | 25.0% |
| !!! | ATTATCCTAGTTCTAGAAAA+AGG | - | chr5.3:56117822-56117841 | MS.gene009867:intron | 25.0% |
| !!! | GAACTAGGATAATTTGTTTT+TGG | + | chr5.3:56117815-56117834 | None:intergenic | 25.0% |
| !!! | GTAGATTTTGATTCTTGAAT+TGG | - | chr5.3:56117047-56117066 | MS.gene009867:CDS | 25.0% |
| !!! | TACTATTTCTTTGGAATGAA+TGG | + | chr5.3:56116438-56116457 | None:intergenic | 25.0% |
| !!! | TGATTCTCTAGAATTGATTT+TGG | + | chr5.3:56117157-56117176 | None:intergenic | 25.0% |
| AAAATTTATGTTGGCAGCTT+TGG | + | chr5.3:56117340-56117359 | None:intergenic | 30.0% | |
| AAATCCATTCACTTTAAGCT+AGG | - | chr5.3:56117020-56117039 | MS.gene009867:CDS | 30.0% | |
| AAATCCTAGCTTAAAGTGAA+TGG | + | chr5.3:56117027-56117046 | None:intergenic | 30.0% | |
| AAATTTATGTTGGCAGCTTT+GGG | + | chr5.3:56117339-56117358 | None:intergenic | 30.0% | |
| AACGAAAATAAGGGTTGTTT+GGG | + | chr5.3:56117943-56117962 | None:intergenic | 30.0% | |
| ATAAAGCTCCAAAATTCTCA+TGG | - | chr5.3:56118115-56118134 | MS.gene009867:intron | 30.0% | |
| TCCCTTCATATTTGAAAGAA+AGG | + | chr5.3:56117709-56117728 | None:intergenic | 30.0% | |
| TTCAAAACTTCAAGTACCAA+CGG | - | chr5.3:56117785-56117804 | MS.gene009867:intron | 30.0% | |
| ! | ACGATTTTGCAACGAAAATA+AGG | + | chr5.3:56117953-56117972 | None:intergenic | 30.0% |
| ! | ACGTTTTCTTTTGCAACAAA+TGG | - | chr5.3:56117642-56117661 | MS.gene009867:intron | 30.0% |
| ! | AGAATTGATTCTGACATGTT+TGG | - | chr5.3:56116967-56116986 | MS.gene009867:CDS | 30.0% |
| ! | AGTGAAGCTTACTATTTCTT+TGG | + | chr5.3:56116447-56116466 | None:intergenic | 30.0% |
| ! | ATATGCTTCTAAAAGAGTAG+AGG | - | chr5.3:56117898-56117917 | MS.gene009867:intron | 30.0% |
| ! | ATCCAAACACAAATCACTTT+TGG | - | chr5.3:56117115-56117134 | MS.gene009867:CDS | 30.0% |
| ! | ATTGTGACTTTTAGCACAAT+CGG | + | chr5.3:56118280-56118299 | None:intergenic | 30.0% |
| ! | CGATTTTGCAACGAAAATAA+GGG | + | chr5.3:56117952-56117971 | None:intergenic | 30.0% |
| ! | GGGGATTTTCTATATTTCAA+AGG | - | chr5.3:56118200-56118219 | MS.gene009867:intron | 30.0% |
| !! | CTTAAAGTGAATGGATTTTG+AGG | + | chr5.3:56117018-56117037 | None:intergenic | 30.0% |
| !! | CTTCAAGTTGGAAACAATTA+TGG | + | chr5.3:56116792-56116811 | None:intergenic | 30.0% |
| !! | TAGTTCTAGAAAAAGGTACA+AGG | - | chr5.3:56117829-56117848 | MS.gene009867:intron | 30.0% |
| !!! | AAATGTTTTGATTCCTTCTC+CGG | + | chr5.3:56116392-56116411 | None:intergenic | 30.0% |
| !!! | TGAGAATTTTGGAGCTTTAT+AGG | + | chr5.3:56118115-56118134 | None:intergenic | 30.0% |
| !!! | TTGGTACTTGAAGTTTTGAA+AGG | + | chr5.3:56117785-56117804 | None:intergenic | 30.0% |
| !!! | TTGTACCTTTTTCTAGAACT+AGG | + | chr5.3:56117830-56117849 | None:intergenic | 30.0% |
| AAAAGTCACAATGTTTCGTG+CGG | - | chr5.3:56118288-56118307 | MS.gene009867:CDS | 35.0% | |
| AATCGTCAAGGGAAAATATG+CGG | - | chr5.3:56117967-56117986 | MS.gene009867:intron | 35.0% | |
| ATCAGCAATGCAAATAGTGA+GGG | - | chr5.3:56118180-56118199 | MS.gene009867:intron | 35.0% | |
| CAACGAAAATAAGGGTTGTT+TGG | + | chr5.3:56117944-56117963 | None:intergenic | 35.0% | |
| CAGTTACTCTCATCAAGAAA+GGG | + | chr5.3:56117420-56117439 | None:intergenic | 35.0% | |
| TAGGACCAAACTTCAAAAGA+CGG | + | chr5.3:56117472-56117491 | None:intergenic | 35.0% | |
| TCAGTTACTCTCATCAAGAA+AGG | + | chr5.3:56117421-56117440 | None:intergenic | 35.0% | |
| TTTCGTTGCAAAATCGTCAA+GGG | - | chr5.3:56117956-56117975 | MS.gene009867:intron | 35.0% | |
| ! | ACTCTAAAAGCAACTTAGAG+TGG | - | chr5.3:56117258-56117277 | MS.gene009867:intron | 35.0% |
| ! | GACATATTTGGAATGAGATG+AGG | - | chr5.3:56116749-56116768 | MS.gene009867:CDS | 35.0% |
| ! | GACCAAAAGTGATTTGTGTT+TGG | + | chr5.3:56117120-56117139 | None:intergenic | 35.0% |
| ! | TGGAGCTTTATAGGAACATT+TGG | + | chr5.3:56118106-56118125 | None:intergenic | 35.0% |
| ! | TTATAGGAACATTTGGCTTC+AGG | + | chr5.3:56118099-56118118 | None:intergenic | 35.0% |
| ! | TTTTCGTTGCAAAATCGTCA+AGG | - | chr5.3:56117955-56117974 | MS.gene009867:intron | 35.0% |
| !!! | ATTTGTTTTTGGTTCTCCGT+TGG | + | chr5.3:56117804-56117823 | None:intergenic | 35.0% |
| AAGCTCCAAAATTCTCATGG+AGG | - | chr5.3:56118118-56118137 | MS.gene009867:intron | 40.0% | |
| ACAAGGTTGAAACATGTGAG+AGG | - | chr5.3:56117846-56117865 | MS.gene009867:intron | 40.0% | |
| AGCTCCAAAATTCTCATGGA+GGG | - | chr5.3:56118119-56118138 | MS.gene009867:intron | 40.0% | |
| CACACCATTCGCTATACTAT+AGG | + | chr5.3:56117491-56117510 | None:intergenic | 40.0% | |
| CATCAGCAATGCAAATAGTG+AGG | - | chr5.3:56118179-56118198 | MS.gene009867:intron | 40.0% | |
| CTTCTGATACAACGTGAGTT+TGG | + | chr5.3:56117198-56117217 | None:intergenic | 40.0% | |
| GCTACAATTACTGTTCCAGA+TGG | - | chr5.3:56117581-56117600 | MS.gene009867:intron | 40.0% | |
| TCAGCAATGCAAATAGTGAG+GGG | - | chr5.3:56118181-56118200 | MS.gene009867:intron | 40.0% | |
| TGGTCCTATAGTATAGCGAA+TGG | - | chr5.3:56117484-56117503 | MS.gene009867:intron | 40.0% | |
| ! | AATTCTAGTCCCTCTAGAAG+TGG | + | chr5.3:56116933-56116952 | None:intergenic | 40.0% |
| ! | AGAGGGACTAGAATTGATTC+TGG | - | chr5.3:56116938-56116957 | MS.gene009867:CDS | 40.0% |
| ! | ATGTTTGGTTCCACTTCTAG+AGG | - | chr5.3:56116920-56116939 | MS.gene009867:CDS | 40.0% |
| ! | TGTTTGGTTCCACTTCTAGA+GGG | - | chr5.3:56116921-56116940 | MS.gene009867:CDS | 40.0% |
| !! | TCTTTGGAATGAATGGGTGA+GGG | + | chr5.3:56116431-56116450 | None:intergenic | 40.0% |
| !! | TTCTTTGGAATGAATGGGTG+AGG | + | chr5.3:56116432-56116451 | None:intergenic | 40.0% |
| !!! | AGTGCATGTTTTGACACGTT+TGG | + | chr5.3:56117389-56117408 | None:intergenic | 40.0% |
| !!! | ATGTTTTGACACGTTTGGGT+AGG | + | chr5.3:56117384-56117403 | None:intergenic | 40.0% |
| !!! | GTAAGCCGTCTTTTGAAGTT+TGG | - | chr5.3:56117464-56117483 | MS.gene009867:intron | 40.0% |
| !!! | GTGCATGTTTTGACACGTTT+GGG | + | chr5.3:56117388-56117407 | None:intergenic | 40.0% |
| AAAATTCTCATGGAGGGCAG+TGG | - | chr5.3:56118125-56118144 | MS.gene009867:intron | 45.0% | |
| AAATTCTCATGGAGGGCAGT+GGG | - | chr5.3:56118126-56118145 | MS.gene009867:intron | 45.0% | |
| ACAACGTGAGTTTGGTTGTG+TGG | + | chr5.3:56117190-56117209 | None:intergenic | 45.0% | |
| AGATGGTCGTGTCTGGAAAA+TGG | - | chr5.3:56117598-56117617 | MS.gene009867:intron | 45.0% | |
| AGGGACAACAAACTGTCACA+TGG | - | chr5.3:56118220-56118239 | MS.gene009867:intron | 45.0% | |
| ATGAATGGGTGAGGGAAGTA+TGG | + | chr5.3:56116423-56116442 | None:intergenic | 45.0% | |
| GTGTGTTTGAGCTGATCAAG+AGG | - | chr5.3:56118251-56118270 | MS.gene009867:CDS | 45.0% | |
| ! | ACTGCCCTCCATGAGAATTT+TGG | + | chr5.3:56118126-56118145 | None:intergenic | 45.0% |
| ! | ATTTTCCAGACACGACCATC+TGG | + | chr5.3:56117599-56117618 | None:intergenic | 45.0% |
| ! | TTGAAACATGTGAGAGGCGT+GGG | - | chr5.3:56117852-56117871 | MS.gene009867:intron | 45.0% |
| !! | GTTGTTTGGGTTGAGTTCCT+TGG | + | chr5.3:56117930-56117949 | None:intergenic | 45.0% |
| AAGAGTAGAGGATGCTGCCA+AGG | - | chr5.3:56117910-56117929 | MS.gene009867:intron | 50.0% | |
| ACGTGAGTTTGGTTGTGTGG+TGG | + | chr5.3:56117187-56117206 | None:intergenic | 50.0% | |
| GTTGAAACATGTGAGAGGCG+TGG | - | chr5.3:56117851-56117870 | MS.gene009867:intron | 50.0% | |
| ! | ATGTGAGAGGCGTGGGAAAA+AGG | - | chr5.3:56117859-56117878 | MS.gene009867:intron | 50.0% |
| ATGTCCGGACACACTTTCGC+CGG | + | chr5.3:56116364-56116383 | None:intergenic | 55.0% | |
| CTGTTCCAGATGGTCGTGTC+TGG | - | chr5.3:56117591-56117610 | MS.gene009867:intron | 55.0% | |
| GTGTGTCCGGACATCATCAC+CGG | - | chr5.3:56116370-56116389 | MS.gene009867:CDS | 55.0% | |
| ! | CCTTCTCCGGTGATGATGTC+CGG | + | chr5.3:56116379-56116398 | None:intergenic | 55.0% |
| CCGGACATCATCACCGGAGA+AGG | - | chr5.3:56116376-56116395 | MS.gene009867:CDS | 60.0% | |
| !! | GGAGGGCAGTGGGAAGTGTT+TGG | - | chr5.3:56118136-56118155 | MS.gene009867:intron | 60.0% |
| ! | CTCGCCGGCGAAAGTGTGTC+CGG | - | chr5.3:56116357-56116376 | MS.gene009867:CDS | 65.0% |
| CGGACACACTTTCGCCGGCG+AGG | + | chr5.3:56116359-56116378 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 56116350 | 56118327 | 56116350 | ID=MS.gene009867 |
| chr5.3 | mRNA | 56116350 | 56118327 | 56116350 | ID=MS.gene009867.t1;Parent=MS.gene009867 |
| chr5.3 | exon | 56118223 | 56118327 | 56118223 | ID=MS.gene009867.t1.exon1;Parent=MS.gene009867.t1 |
| chr5.3 | CDS | 56118223 | 56118327 | 56118223 | ID=cds.MS.gene009867.t1;Parent=MS.gene009867.t1 |
| chr5.3 | exon | 56116689 | 56117147 | 56116689 | ID=MS.gene009867.t1.exon2;Parent=MS.gene009867.t1 |
| chr5.3 | CDS | 56116689 | 56117147 | 56116689 | ID=cds.MS.gene009867.t1;Parent=MS.gene009867.t1 |
| chr5.3 | exon | 56116350 | 56116610 | 56116350 | ID=MS.gene009867.t1.exon3;Parent=MS.gene009867.t1 |
| chr5.3 | CDS | 56116350 | 56116610 | 56116350 | ID=cds.MS.gene009867.t1;Parent=MS.gene009867.t1 |
| Gene Sequence |
| Protein sequence |
