AlfalfaGEDB | MS.gene009993

M. sativa cultivar XinJiangDaYe / MS.gene009993

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF01657.20 PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene009993.t1	XP_003615455.1	92.1	545	43	0	1	545	122	666	1.70E-252	881.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene009993.t1	Q8S9L6	57.0	525	203	7	1	502	126	650	3.7e-134	479.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene009993.t1	G7KDB1	92.1	545	43	0	1	545	122	666	1.2e-252	881.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene009993.t1	MTR_5g068260	91.009	545	49	0	1	545	122	666	976
MS.gene009993.t1	MTR_5g068190	78.339	554	101	6	1	545	120	663	843
MS.gene009993.t1	MTR_1g105820	65.036	552	180	6	1	545	126	671	689
MS.gene009993.t1	MTR_1g021610	61.828	558	184	7	1	545	129	670	674
MS.gene009993.t1	MTR_5g068250	82.701	422	65	3	1	415	127	547	671
MS.gene009993.t1	MTR_1g021642	62.364	550	189	5	1	545	142	678	657
MS.gene009993.t1	MTR_1g021632	60.215	558	190	10	1	544	127	666	655
MS.gene009993.t1	MTR_1g105800	62.271	546	186	6	1	545	127	653	652
MS.gene009993.t1	MTR_1g021630	58.783	575	182	9	1	545	127	676	634
MS.gene009993.t1	MTR_1g021635	57.345	565	204	6	1	545	127	674	628

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene009993.t1	AT4G21410	53.333	525	222	7	1	502	1	525	0.0	550
MS.gene009993.t1	AT4G21410	53.333	525	222	7	1	502	126	650	0.0	548
MS.gene009993.t1	AT4G05200	50.000	560	255	9	1	545	126	675	0.0	537
MS.gene009993.t1	AT4G05200	50.000	560	255	9	1	545	144	693	0.0	537
MS.gene009993.t1	AT4G38830	53.592	515	220	8	2	499	122	634	0.0	526
MS.gene009993.t1	AT4G23180	50.267	561	238	10	1	545	134	669	1.09e-177	516
MS.gene009993.t1	AT4G23160	48.837	559	256	9	1	545	140	682	1.83e-175	511
MS.gene009993.t1	AT4G21400	50.954	524	236	9	1	507	128	647	6.98e-174	507
MS.gene009993.t1	AT4G21400	49.906	533	240	9	1	507	128	659	1.48e-171	501
MS.gene009993.t1	AT4G21230	52.446	511	220	9	1	499	122	621	5.52e-171	498

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Find 95 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTTGTCCATTAATTC+TGG	0.238255	5.3:-54531593	MS.gene009993:CDS
AAACTTGGGGAAGGCGGATT+TGG	0.275274	5.3:-54531836	MS.gene009993:CDS
AAATCAGATGTCTTTAGTTT+TGG	0.317093	5.3:-54530903	MS.gene009993:CDS
AACAAAACAATAGTAACAAC+TGG	0.349202	5.3:+54532152	None:intergenic
AACTCTACTTGTATTTGCTT+GGG	0.376437	5.3:+54531097	None:intergenic
AACTGGGACTGCTATGATGA+TGG	0.577725	5.3:+54532169	None:intergenic
AAGAATAGTTACATTCGTCA+CGG	0.612710	5.3:-54530849	MS.gene009993:CDS
AAGCGCTTCAAAATCATTCA+AGG	0.482196	5.3:-54531269	MS.gene009993:CDS
AATGCTAAGATTTCAGATTT+TGG	0.184117	5.3:-54531149	MS.gene009993:CDS
ACAAAACAATAGTAACAACT+GGG	0.685683	5.3:+54532153	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGGTTGTCCATTAATTC+TGG	-	chr5.3:54531534-54531553	MS.gene009993:CDS	30.0%
AACTCTACTTGTATTTGCTT+GGG	+	chr5.3:54532033-54532052	None:intergenic	30.0%
AAGAATAGTTACATTCGTCA+CGG	-	chr5.3:54532278-54532297	MS.gene009993:intron	30.0%
AGAATCGACAAAATTGTAGA+TGG	-	chr5.3:54532397-54532416	MS.gene009993:CDS	30.0%
AGTCTTGACTACTTCATATT+TGG	-	chr5.3:54531690-54531709	MS.gene009993:intron	30.0%
ATACCTTTGTGATTAGTAGA+TGG	+	chr5.3:54530740-54530759	None:intergenic	30.0%
ATCATGAGATGCATTCATAT+TGG	-	chr5.3:54532665-54532684	MS.gene009993:intron	30.0%
ATTTCTTCATCATCTTCTGA+AGG	+	chr5.3:54531198-54531217	None:intergenic	30.0%
CAAGTAGTCTAACTAAATTC+CGG	+	chr5.3:54531614-54531633	None:intergenic	30.0%
CTATTGTCCATAAAAAATGC+AGG	+	chr5.3:54532791-54532810	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	54530209	54532940	54530209	ID=MS.gene009993
chr5.3	mRNA	54530209	54532940	54530209	ID=MS.gene009993.t1;Parent=MS.gene009993
chr5.3	exon	54532751	54532940	54532751	ID=MS.gene009993.t1.exon1;Parent=MS.gene009993.t1
chr5.3	CDS	54532751	54532940	54532751	ID=cds.MS.gene009993.t1;Parent=MS.gene009993.t1
chr5.3	exon	54532394	54532630	54532394	ID=MS.gene009993.t1.exon2;Parent=MS.gene009993.t1
chr5.3	CDS	54532394	54532630	54532394	ID=cds.MS.gene009993.t1;Parent=MS.gene009993.t1
chr5.3	exon	54532090	54532215	54532090	ID=MS.gene009993.t1.exon3;Parent=MS.gene009993.t1
chr5.3	CDS	54532090	54532215	54532090	ID=cds.MS.gene009993.t1;Parent=MS.gene009993.t1
chr5.3	exon	54531823	54531956	54531823	ID=MS.gene009993.t1.exon4;Parent=MS.gene009993.t1
chr5.3	CDS	54531823	54531956	54531823	ID=cds.MS.gene009993.t1;Parent=MS.gene009993.t1
chr5.3	exon	54531438	54531648	54531438	ID=MS.gene009993.t1.exon5;Parent=MS.gene009993.t1
chr5.3	CDS	54531438	54531648	54531438	ID=cds.MS.gene009993.t1;Parent=MS.gene009993.t1
chr5.3	exon	54531086	54531323	54531086	ID=MS.gene009993.t1.exon6;Parent=MS.gene009993.t1
chr5.3	CDS	54531086	54531323	54531086	ID=cds.MS.gene009993.t1;Parent=MS.gene009993.t1
chr5.3	exon	54530821	54530971	54530821	ID=MS.gene009993.t1.exon7;Parent=MS.gene009993.t1
chr5.3	CDS	54530821	54530971	54530821	ID=cds.MS.gene009993.t1;Parent=MS.gene009993.t1
chr5.3	exon	54530209	54530559	54530209	ID=MS.gene009993.t1.exon8;Parent=MS.gene009993.t1
chr5.3	CDS	54530209	54530559	54530209	ID=cds.MS.gene009993.t1;Parent=MS.gene009993.t1

Gene Sequence

>MS.gene009993

ATGCTGCGTTACTCAAACCGGTTGATATTTGGACTAATGGAAACATTCCCTGATTTTTTTATGTGGAATCCGCTTAATGCAACGGATGTGGATAATTACAACAAAGTATTGAGAAAATTGTTACATGATTTGAAAAATCAAGCTGCAACTGGTGATTCTATGAAAAAATATGCTACCGCAAATGTAACAGGTAGTATAAATATAAAAGTTAATTAGAAAATTTTAGCAATAGTTTTTGTTTTTAAATACTAAACTACTACTAGCAAGTCTAGCTAACTATTCTAACTAACATTTAAATTTCTATTAACAGGTCCAAATTTTCAGGATATATATAGTCTAATGCAGTGTACACCTGATATAAATTACTTGGATTGCAATCAATGTTTGGTTCAAGCTATAGCTAATCTTCCATCTTGTTGTGGAAATAAGATAGGTGGGAGAGTTATTAGACCAAGCTGTAATCTTAGATATGAAAATTATAGGTTCTATGAACTTAATGTTCAACCTCCGCCGCCGCCACCTACTTCACCATCTACTAATCACAAAGGTATGCATGCATGTAATCCTTCAATTTTCATCATTATTATATGAACAAAAGCAAGTAAAGAAAAAGAAACAATTAGAATAGCAAATTGAGTTCTAGAGTTAAAAGATATAGACACAAGAAAATAATGATTGATCATAGACTTTTTATAAATCTTACTAGGATTTTCTGATTTGTGTAGGAAAGGATCACACATCAAGAACTGCCATCATCATAGCAGTCCCAGTTGTTACTATTGTTTTGTTGCTATGTTTCATCTGCATCTATTTAAGACTAAGAGTGAAGAAACCAAATGAAAGTACTAAAAGTAAGTCTAAGGCCTCCAAACATGAATTTTTTTATCACTTTGTTATGAGCATATGGTATCTGTTTCACCTATATATATATATATATATGCAACATACTGTTTTTTCTTTTTTAACAACTATGGCATATCTCAGTTCCTTCAGAAGATGATGAAGAAATTACAACCTTTGAGTCATTACAATTACCCTTTGACACTTTAAAAGTTGCTACAAATGACTTCTCTGATTCTAATAAACTTGGGGAAGGCGGATTTGGAGCTGTATATCAGGTAGTTGCTTTCAGATAAATATAATAACTAGCAAAAATAAATTAGCAGTGAAATTTTTAAATATGAAATTTTTCTTTAACTTGTTAATTTTGGTTAAAATATTGTATTACTTTGTCAAAACTTGGCTAAAATAAAATATATTTACTGTACTTACAACTAGTTGCGTCTTTTCAGGGTAGGCTCTCTAATGGACAAGCGATCGCTGTTAAAAGGTTGTCCATTAATTCTGGCCAAGGAGATAAAGAATTTAAGAATGAAGTGCTTTTAATGGCTAAACTTCAACACCGGAATTTAGTTAGACTACTTGGTTTTACTATTGAAGGGAGAGAAAGACTACTTGTCTATGAATTTATTCCCAATAAAAGTCTTGACTACTTCATATTTGGTATAATTAGAATATCATCATAATTAGATTGTTGCTCTATCATTCAACTTTGTTTCATGATAAAGACTAACTTTCGTGATAGCTAAAACGCGGGTGACTTTGTTATGTATGTAGATCCACTGAAGAAAGCACAATTAGATTGGAAGAAGCGCTTCAAAATCATTCAAGGTATTGCTCGAGGCGTTCTTTACCTTCATGAGGATTCTCGACTGCGTATTATACACCGCGATCTCAAAGCAAGCAACATTCTCCTAGACGAAGACATGAATGCTAAGATTTCAGATTTTGGCATGGCAAGACTAATTCTATTGGATCAAACCCAAGCAAATACAAGTAGAGTTGTTGGAACCTAGTAAGTGTTAGATTATGTTTGTTCTTACATATTATATTAAGAGCTTTGATCTAAATCATGTAAATATTTTGTGTTTACTGTTTTCATTTACGCGCAACAATATTTGGCATGTAGCGGATATATGGCACCTGAGTATGTAATGCATGGAGAATTTTCAGTGAAATCAGATGTCTTTAGTTTTGGTGTTCTGGTTCTTGAGATTATAAGTGGCCAAAAGAATAGTTACATTCGTCACGGGGAAAATACGGAGGATCTATTGAGCTTTGTAAGTCTTCCTTTATTCATTATTGTTTGTTATGAGTTGTATTATTTTGACAGATAAACTTACCATAAAGAATCGACAAAATTGTAGATGGTTAGCAGAGTTTAAAAATATGGTTGGGAATGGCATATAGAAGTTACATCGAGTAAATATCACCATAAATTTACATTGCTAGTAAACATTGATGTAGGAGTGGAAATGGCAACTTAATAAGTTAATATTATCTAGTAAATCATCTAAAATTGAGTAAATATATACCTGCAGGCATGGAGAAGTTGGAGGGAAGGAACAGCTGCAAATATTATTGATTCATCACTATACAACAGTTCAAGAAATGAAATCATGAGATGCATTCATATTGGTTTACTTTGCGTCCAAGACAACGTAGCTAGAAGACCAACCATGGCCACCATTGTACTCATGCTAAGTAGCTATTCTCTCACTCTCTCTTTACCTTCAGAACCTGCATTTTTTATGGACAATAGAACTAGAAGCCTTCAAGAGATGAGGCTGTGGGAAGAGAATTCAGGGACAACAAGATCGAGTCAATCCACAAGTAAATCAGCTACAGAATCAGTAAATGAGGCTTCATTTACTGATCCATATCCTCGTTAG

Protein sequence

>MS.gene009993.t1

MLRYSNRLIFGLMETFPDFFMWNPLNATDVDNYNKVLRKLLHDLKNQAATGDSMKKYATANVTGPNFQDIYSLMQCTPDINYLDCNQCLVQAIANLPSCCGNKIGGRVIRPSCNLRYENYRFYELNVQPPPPPPTSPSTNHKGKDHTSRTAIIIAVPVVTIVLLLCFICIYLRLRVKKPNESTKIPSEDDEEITTFESLQLPFDTLKVATNDFSDSNKLGEGGFGAVYQGRLSNGQAIAVKRLSINSGQGDKEFKNEVLLMAKLQHRNLVRLLGFTIEGRERLLVYEFIPNKSLDYFIFDPLKKAQLDWKKRFKIIQGIARGVLYLHEDSRLRIIHRDLKASNILLDEDMNAKISDFGMARLILLDQTQANTSRVVGTYGYMAPEYVMHGEFSVKSDVFSFGVLVLEIISGQKNSYIRHGENTEDLLSFAWRSWREGTAANIIDSSLYNSSRNEIMRCIHIGLLCVQDNVARRPTMATIVLMLSSYSLTLSLPSEPAFFMDNRTRSLQEMRLWEENSGTTRSSQSTSKSATESVNEASFTDPYPR