Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010016.t1 | RHN56335.1 | 95.3 | 127 | 4 | 1 | 1 | 127 | 78 | 202 | 3.50E-58 | 234.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010016.t1 | K4BIZ9 | 37.9 | 124 | 66 | 4 | 14 | 127 | 13 | 135 | 1.1e-12 | 74.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010016.t1 | G7K643 | 95.3 | 127 | 4 | 1 | 1 | 127 | 1 | 125 | 2.5e-58 | 234.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene010016.t1 | TF | WRKY |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010016.t1 | MTR_5g067700 | 95.276 | 127 | 4 | 1 | 1 | 127 | 1 | 125 | 1.15e-84 | 247 |
MS.gene010016.t1 | MTR_3g093830 | 46.094 | 128 | 45 | 7 | 20 | 127 | 23 | 146 | 2.02e-22 | 90.1 |
MS.gene010016.t1 | MTR_7g073430 | 38.462 | 143 | 70 | 6 | 1 | 127 | 1 | 141 | 2.39e-18 | 78.6 |
MS.gene010016.t1 | MTR_7g073380 | 37.692 | 130 | 63 | 5 | 14 | 127 | 15 | 142 | 1.31e-17 | 77.0 |
MS.gene010016.t1 | MTR_8g005750 | 35.043 | 117 | 70 | 2 | 15 | 126 | 6 | 121 | 2.35e-15 | 70.5 |
MS.gene010016.t1 | MTR_0002s1250 | 34.146 | 123 | 69 | 5 | 15 | 126 | 8 | 129 | 8.74e-13 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010016.t1 | AT3G56400 | 34.459 | 148 | 67 | 6 | 1 | 127 | 1 | 139 | 2.33e-16 | 73.6 |
MS.gene010016.t1 | AT2G40750 | 28.655 | 171 | 74 | 8 | 2 | 127 | 4 | 171 | 5.93e-12 | 61.6 |
Find 23 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTTTCTTTCTAACACTTTC+AGG | 0.226424 | 5.3:+54018714 | None:intergenic |
AATCATTCATGGAGAAAGTA+TGG | 0.268191 | 5.3:-54016170 | MS.gene010016:CDS |
CTGAAGAAGAATCTTGAGTT+TGG | 0.329999 | 5.3:+54018653 | None:intergenic |
AATGATTATCAACAATGGTT+TGG | 0.347556 | 5.3:+54016186 | None:intergenic |
ATGATTATCAACAATGGTTT+GGG | 0.360761 | 5.3:+54016187 | None:intergenic |
CCATTGTTGATAATCATTCA+TGG | 0.368964 | 5.3:-54016181 | MS.gene010016:CDS |
GATAATCAAAGAACTTGTTA+AGG | 0.389804 | 5.3:-54018691 | MS.gene010016:CDS |
GGAAGAGTGCAGCTGAGATA+TGG | 0.391667 | 5.3:-54016220 | MS.gene010016:CDS |
AACAATGGTTTGGGAAACTA+TGG | 0.395929 | 5.3:+54016196 | None:intergenic |
ATTAGTGAAAGTAGAAAGAA+GGG | 0.442638 | 5.3:-54018498 | MS.gene010016:CDS |
CTTTCTTTCTAACACTTTCA+GGG | 0.446465 | 5.3:+54018715 | None:intergenic |
AATTAGTGAAAGTAGAAAGA+AGG | 0.462260 | 5.3:-54018499 | MS.gene010016:CDS |
ATAATCAAAGAACTTGTTAA+GGG | 0.491966 | 5.3:-54018690 | MS.gene010016:CDS |
GAAGAGGTTGCTACAAAAGA+AGG | 0.499456 | 5.3:-54018473 | MS.gene010016:intron |
CTTCAGAACGAGAATCCCTA+TGG | 0.526631 | 5.3:-54018636 | MS.gene010016:CDS |
AGTAGAAAGAAGGGAAGAAG+AGG | 0.527985 | 5.3:-54018489 | MS.gene010016:CDS |
GTATGGGCAGAAGAAAATCA+TGG | 0.554126 | 5.3:-54016153 | MS.gene010016:CDS |
AGCAAGATGATCAGCTCCAT+AGG | 0.557040 | 5.3:+54018620 | None:intergenic |
CCATGAATGATTATCAACAA+TGG | 0.572348 | 5.3:+54016181 | None:intergenic |
TCATGGATTCTGAATTCCCC+AGG | 0.575030 | 5.3:-54016136 | MS.gene010016:intron |
GCAAGATGATCAGCTCCATA+GGG | 0.589366 | 5.3:+54018621 | None:intergenic |
ATCATTCATGGAGAAAGTAT+GGG | 0.593517 | 5.3:-54016169 | MS.gene010016:CDS |
CGTGCTGAGATCTTTCACTG+AGG | 0.697606 | 5.3:-54018592 | MS.gene010016:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAAAAACATTTACCTA+TGG | + | chr5.3:54017894-54017913 | None:intergenic | 15.0% |
!! | AAAGTAGAATATATTCAATA+TGG | - | chr5.3:54017268-54017287 | MS.gene010016:intron | 15.0% |
!! | ATTACATTGAAAATTGAAAT+GGG | - | chr5.3:54017344-54017363 | MS.gene010016:intron | 15.0% |
!! | CTAATTATAAGCTTAAATTA+CGG | + | chr5.3:54017514-54017533 | None:intergenic | 15.0% |
!! | TAAAAAAAATAAACAAGTGA+AGG | - | chr5.3:54017183-54017202 | MS.gene010016:intron | 15.0% |
!! | TATTACATTGAAAATTGAAA+TGG | - | chr5.3:54017343-54017362 | MS.gene010016:intron | 15.0% |
!!! | AAGTACTATTTTATAGATTT+TGG | - | chr5.3:54018458-54018477 | MS.gene010016:intron | 15.0% |
!!! | ACTTTATTTTTTTTTAAGAG+TGG | + | chr5.3:54016807-54016826 | None:intergenic | 15.0% |
!!! | ATATTTTGATATACTTCTTT+CGG | - | chr5.3:54016633-54016652 | MS.gene010016:intron | 15.0% |
!!! | TAAGCAAAAATCAATTTTTT+AGG | - | chr5.3:54016665-54016684 | MS.gene010016:intron | 15.0% |
!! | AAAGGAAAAAAAAAATACCT+GGG | + | chr5.3:54018658-54018677 | None:intergenic | 20.0% |
!! | ACAAAAGGATAACTTATTAT+GGG | - | chr5.3:54017394-54017413 | MS.gene010016:intron | 20.0% |
!! | CATTCATTAAATGATGTATT+TGG | + | chr5.3:54016699-54016718 | None:intergenic | 20.0% |
!! | CATTTCATCAATCTTAAATA+TGG | - | chr5.3:54018341-54018360 | MS.gene010016:intron | 20.0% |
!! | TAAAGGAAAAAAAAAATACC+TGG | + | chr5.3:54018659-54018678 | None:intergenic | 20.0% |
!! | TACAAAAGGATAACTTATTA+TGG | - | chr5.3:54017393-54017412 | MS.gene010016:intron | 20.0% |
!! | TGCATGATTTATACATTATT+TGG | - | chr5.3:54018713-54018732 | MS.gene010016:CDS | 20.0% |
!! | TTAATCTCATTAATACTAGT+TGG | - | chr5.3:54017645-54017664 | MS.gene010016:intron | 20.0% |
!!! | AACAATGTTTTATGATGATA+TGG | + | chr5.3:54018143-54018162 | None:intergenic | 20.0% |
!!! | AACTTAAGAAACTATTGATT+TGG | - | chr5.3:54016977-54016996 | MS.gene010016:intron | 20.0% |
!!! | AAGATTTGACTAGTTAAATT+TGG | + | chr5.3:54016902-54016921 | None:intergenic | 20.0% |
!!! | ATAATCAAAGAACTTGTTAA+GGG | - | chr5.3:54016084-54016103 | MS.gene010016:intron | 20.0% |
!!! | CATATTTAAGATTGATGAAA+TGG | + | chr5.3:54018343-54018362 | None:intergenic | 20.0% |
!!! | GAAGAATATCATTTTACAAA+AGG | - | chr5.3:54017379-54017398 | MS.gene010016:intron | 20.0% |
!!! | TTTTTGCTTATAATAGTGAT+CGG | - | chr5.3:54016734-54016753 | MS.gene010016:intron | 20.0% |
! | AAACCTAAAATGTAAGCTTA+TGG | - | chr5.3:54017774-54017793 | MS.gene010016:intron | 25.0% |
! | AAATGTAATCTGATTGTATG+TGG | - | chr5.3:54018256-54018275 | MS.gene010016:intron | 25.0% |
! | AAGGAAAAAAAAAATACCTG+GGG | + | chr5.3:54018657-54018676 | None:intergenic | 25.0% |
! | AATGATTATCAACAATGGTT+TGG | + | chr5.3:54018591-54018610 | None:intergenic | 25.0% |
! | AATGTAACTTCATGATAGTT+CGG | - | chr5.3:54017060-54017079 | MS.gene010016:intron | 25.0% |
! | AATTAGTGAAAGTAGAAAGA+AGG | - | chr5.3:54016275-54016294 | MS.gene010016:intron | 25.0% |
! | AGCAAATGACTCAATTAATT+TGG | + | chr5.3:54017151-54017170 | None:intergenic | 25.0% |
! | AGTCTAGAGGAAAAAAATTA+TGG | + | chr5.3:54017094-54017113 | None:intergenic | 25.0% |
! | ATATATTTCTTTGCACGTAA+AGG | + | chr5.3:54018676-54018695 | None:intergenic | 25.0% |
! | ATCAGATTACATTTACATGT+AGG | + | chr5.3:54018250-54018269 | None:intergenic | 25.0% |
! | ATGATTATCAACAATGGTTT+GGG | + | chr5.3:54018590-54018609 | None:intergenic | 25.0% |
! | ATTAGTGAAAGTAGAAAGAA+GGG | - | chr5.3:54016276-54016295 | MS.gene010016:intron | 25.0% |
! | GAGGTAATTATTTACAAATG+AGG | - | chr5.3:54016759-54016778 | MS.gene010016:intron | 25.0% |
! | TGCAATGATTTCATGAAATT+GGG | - | chr5.3:54016455-54016474 | MS.gene010016:intron | 25.0% |
!! | ATGACTCAATTAATTTGGAA+CGG | + | chr5.3:54017146-54017165 | None:intergenic | 25.0% |
!! | CCTTAAAATTTTTACAGTCA+AGG | - | chr5.3:54017818-54017837 | MS.gene010016:intron | 25.0% |
!! | CCTTGACTGTAAAAATTTTA+AGG | + | chr5.3:54017821-54017840 | None:intergenic | 25.0% |
!!! | CTTTTTTATCAAGCAAACAA+AGG | + | chr5.3:54018310-54018329 | None:intergenic | 25.0% |
!!! | GATAATCAAAGAACTTGTTA+AGG | - | chr5.3:54016083-54016102 | MS.gene010016:intron | 25.0% |
!!! | GTTTTTTTTTCACATGTAGT+AGG | - | chr5.3:54016363-54016382 | MS.gene010016:intron | 25.0% |
!!! | TCAAAAACCCTTATTTTTGT+CGG | - | chr5.3:54016417-54016436 | MS.gene010016:intron | 25.0% |
!!! | TTGACTTTTTTCTATGAACT+TGG | + | chr5.3:54016401-54016420 | None:intergenic | 25.0% |
AAAATCGCCGACAAAAATAA+GGG | + | chr5.3:54016427-54016446 | None:intergenic | 30.0% | |
AAAGAAAATGAAAAACCGCT+TGG | + | chr5.3:54018417-54018436 | None:intergenic | 30.0% | |
AAGGATAACTTATTATGGGA+TGG | - | chr5.3:54017398-54017417 | MS.gene010016:intron | 30.0% | |
AATCATTCATGGAGAAAGTA+TGG | - | chr5.3:54018604-54018623 | MS.gene010016:CDS | 30.0% | |
ACCTATGGACAATGTATAAT+TGG | + | chr5.3:54017879-54017898 | None:intergenic | 30.0% | |
ACTAGTCAAATCTTTCTCTA+TGG | - | chr5.3:54016908-54016927 | MS.gene010016:intron | 30.0% | |
ACTTTCTTTCTAACACTTTC+AGG | + | chr5.3:54016063-54016082 | None:intergenic | 30.0% | |
AGAGTAAAGGAGAAATAAAG+AGG | + | chr5.3:54018191-54018210 | None:intergenic | 30.0% | |
AGGAAAAAAATTATGGCATG+TGG | + | chr5.3:54017087-54017106 | None:intergenic | 30.0% | |
AGTAGTTCAGCTAATAACTA+AGG | + | chr5.3:54018088-54018107 | None:intergenic | 30.0% | |
CCATGAATGATTATCAACAA+TGG | + | chr5.3:54018596-54018615 | None:intergenic | 30.0% | |
CTAGCTATAAGGAAATTTGA+AGG | - | chr5.3:54016599-54016618 | MS.gene010016:intron | 30.0% | |
CTTTCTTTCTAACACTTTCA+GGG | + | chr5.3:54016062-54016081 | None:intergenic | 30.0% | |
GAAATAAAGAGGCAATAAAG+AGG | + | chr5.3:54018180-54018199 | None:intergenic | 30.0% | |
GTAGTTCAGCTAATAACTAA+GGG | + | chr5.3:54018087-54018106 | None:intergenic | 30.0% | |
GTGCAATGATTTCATGAAAT+TGG | - | chr5.3:54016454-54016473 | MS.gene010016:intron | 30.0% | |
TAAGTACTCTTGTCAAGTAT+TGG | - | chr5.3:54017221-54017240 | MS.gene010016:intron | 30.0% | |
TAGATGTTTGTCACTAAAAG+TGG | - | chr5.3:54017971-54017990 | MS.gene010016:intron | 30.0% | |
TTAAGGTTGTGTCTTACTTA+TGG | + | chr5.3:54017804-54017823 | None:intergenic | 30.0% | |
TTAAGTTAATTGTTTCCCAC+AGG | - | chr5.3:54018533-54018552 | MS.gene010016:CDS | 30.0% | |
! | AATTTTTACAGTCAAGGCTT+AGG | - | chr5.3:54017824-54017843 | MS.gene010016:intron | 30.0% |
! | ATCATTCATGGAGAAAGTAT+GGG | - | chr5.3:54018605-54018624 | MS.gene010016:CDS | 30.0% |
! | GTAAAGTTGTTCTAGCTATA+AGG | - | chr5.3:54016588-54016607 | MS.gene010016:intron | 30.0% |
! | GTACCATAAGCTTACATTTT+AGG | + | chr5.3:54017780-54017799 | None:intergenic | 30.0% |
! | TTGAAATGGGTCAGATATTT+TGG | - | chr5.3:54017357-54017376 | MS.gene010016:intron | 30.0% |
!! | CCATTGTTGATAATCATTCA+TGG | - | chr5.3:54018593-54018612 | MS.gene010016:CDS | 30.0% |
AATCTGATTGTATGTGGTTC+AGG | - | chr5.3:54018262-54018281 | MS.gene010016:intron | 35.0% | |
AGCAAACTAGCAGACTATTA+CGG | - | chr5.3:54017731-54017750 | MS.gene010016:intron | 35.0% | |
ATAACTAAGGGTGAGAATCA+TGG | + | chr5.3:54018075-54018094 | None:intergenic | 35.0% | |
ATGAGTGTTTCAAATCCAAG+CGG | - | chr5.3:54018399-54018418 | MS.gene010016:intron | 35.0% | |
CAAAATCGCCGACAAAAATA+AGG | + | chr5.3:54016428-54016447 | None:intergenic | 35.0% | |
CTGAAGAAGAATCTTGAGTT+TGG | + | chr5.3:54016124-54016143 | None:intergenic | 35.0% | |
GACTAAGAGTAAACACGAAA+GGG | + | chr5.3:54018288-54018307 | None:intergenic | 35.0% | |
GCCAATTATACATTGTCCAT+AGG | - | chr5.3:54017875-54017894 | MS.gene010016:intron | 35.0% | |
TCAAGGCTTAGGAAAAAGTA+TGG | - | chr5.3:54017835-54017854 | MS.gene010016:intron | 35.0% | |
TCATGAAATTGGGAACTGTA+CGG | - | chr5.3:54016465-54016484 | MS.gene010016:intron | 35.0% | |
TTGCTTATAATAGTGATCGG+AGG | - | chr5.3:54016737-54016756 | MS.gene010016:intron | 35.0% | |
! | AACAATGGTTTGGGAAACTA+TGG | + | chr5.3:54018581-54018600 | None:intergenic | 35.0% |
! | ACTCAATTAATTTGGAACGG+AGG | + | chr5.3:54017143-54017162 | None:intergenic | 35.0% |
! | GGCTTACATTTTAGACTACT+TGG | - | chr5.3:54016929-54016948 | MS.gene010016:intron | 35.0% |
! | TTACGGGCTTTCTAAAAGTT+AGG | - | chr5.3:54017748-54017767 | MS.gene010016:intron | 35.0% |
!!! | CTTATTTTTGTCGGCGATTT+TGG | - | chr5.3:54016426-54016445 | MS.gene010016:intron | 35.0% |
AGGCTATCGCTATAGAGTAA+AGG | + | chr5.3:54018204-54018223 | None:intergenic | 40.0% | |
AGTAGAAAGAAGGGAAGAAG+AGG | - | chr5.3:54016285-54016304 | MS.gene010016:intron | 40.0% | |
CTTATAATAGTGATCGGAGG+AGG | - | chr5.3:54016740-54016759 | MS.gene010016:intron | 40.0% | |
GAAGAGGTTGCTACAAAAGA+AGG | - | chr5.3:54016301-54016320 | MS.gene010016:intron | 40.0% | |
GCAAACTAGCAGACTATTAC+GGG | - | chr5.3:54017732-54017751 | MS.gene010016:intron | 40.0% | |
GGACTAAGAGTAAACACGAA+AGG | + | chr5.3:54018289-54018308 | None:intergenic | 40.0% | |
GTATGGGCAGAAGAAAATCA+TGG | - | chr5.3:54018621-54018640 | MS.gene010016:CDS | 40.0% | |
GTCTATGATATAGAAGCCCT+AGG | + | chr5.3:54018224-54018243 | None:intergenic | 40.0% | |
GTGTTGTCGAACAAGAAAGT+TGG | + | chr5.3:54018114-54018133 | None:intergenic | 40.0% | |
TACTCTATAGCGATAGCCTA+GGG | - | chr5.3:54018205-54018224 | MS.gene010016:intron | 40.0% | |
TTACTCTATAGCGATAGCCT+AGG | - | chr5.3:54018204-54018223 | MS.gene010016:intron | 40.0% | |
TTCCTCTAGACTTATCAAGC+TGG | - | chr5.3:54017102-54017121 | MS.gene010016:intron | 40.0% | |
! | ACATAGCCTTAGAATAGTCG+AGG | - | chr5.3:54018045-54018064 | MS.gene010016:intron | 40.0% |
!! | CGTATTTGGTTTGAGGTGTA+CGG | - | chr5.3:54016513-54016532 | MS.gene010016:intron | 40.0% |
AGCAAGATGATCAGCTCCAT+AGG | + | chr5.3:54016157-54016176 | None:intergenic | 45.0% | |
AGCCAGCTTGATAAGTCTAG+AGG | + | chr5.3:54017107-54017126 | None:intergenic | 45.0% | |
AGCCTTAGAATAGTCGAGGA+CGG | - | chr5.3:54018049-54018068 | MS.gene010016:intron | 45.0% | |
CTTCAGAACGAGAATCCCTA+TGG | - | chr5.3:54016138-54016157 | MS.gene010016:CDS | 45.0% | |
GCAAGATGATCAGCTCCATA+GGG | + | chr5.3:54016156-54016175 | None:intergenic | 45.0% | |
TCATGGATTCTGAATTCCCC+AGG | - | chr5.3:54018638-54018657 | MS.gene010016:CDS | 45.0% | |
TTGAGGTGTACGGACGTATT+TGG | - | chr5.3:54016523-54016542 | MS.gene010016:intron | 45.0% | |
! | CGTATTTGGTTCGAGGTGTA+CGG | - | chr5.3:54016489-54016508 | MS.gene010016:intron | 45.0% |
!! | GTACGGACGTATTTGGTTTG+AGG | - | chr5.3:54016506-54016525 | MS.gene010016:intron | 45.0% |
CGTGCTGAGATCTTTCACTG+AGG | - | chr5.3:54016182-54016201 | MS.gene010016:CDS | 50.0% | |
GGGAACTGTACGGACGTATT+TGG | - | chr5.3:54016475-54016494 | MS.gene010016:intron | 50.0% | |
TCGAGGTGTACGGACGTATT+TGG | - | chr5.3:54016499-54016518 | MS.gene010016:intron | 50.0% | |
! | GGAAGAGTGCAGCTGAGATA+TGG | - | chr5.3:54018554-54018573 | MS.gene010016:CDS | 50.0% |
! | GTACGGACGTATTTGGTTCG+AGG | - | chr5.3:54016482-54016501 | MS.gene010016:intron | 50.0% |
CTCAGCTGCACTCTTCCTGT+GGG | + | chr5.3:54018551-54018570 | None:intergenic | 55.0% | |
GGCCGTCCTCGACTATTCTA+AGG | + | chr5.3:54018054-54018073 | None:intergenic | 55.0% | |
TCTCAGCTGCACTCTTCCTG+TGG | + | chr5.3:54018552-54018571 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 54016045 | 54018751 | 54016045 | ID=MS.gene010016 |
chr5.3 | mRNA | 54016045 | 54018751 | 54016045 | ID=MS.gene010016.t1;Parent=MS.gene010016 |
chr5.3 | exon | 54018474 | 54018751 | 54018474 | ID=MS.gene010016.t1.exon1;Parent=MS.gene010016.t1 |
chr5.3 | CDS | 54018474 | 54018751 | 54018474 | ID=cds.MS.gene010016.t1;Parent=MS.gene010016.t1 |
chr5.3 | exon | 54016137 | 54016241 | 54016137 | ID=MS.gene010016.t1.exon2;Parent=MS.gene010016.t1 |
chr5.3 | CDS | 54016137 | 54016241 | 54016137 | ID=cds.MS.gene010016.t1;Parent=MS.gene010016.t1 |
chr5.3 | exon | 54016045 | 54016057 | 54016045 | ID=MS.gene010016.t1.exon3;Parent=MS.gene010016.t1 |
chr5.3 | CDS | 54016045 | 54016057 | 54016045 | ID=cds.MS.gene010016.t1;Parent=MS.gene010016.t1 |
Gene Sequence |
Protein sequence |