Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010081.t1 | XP_003615317.1 | 98.1 | 257 | 5 | 0 | 1 | 257 | 1 | 257 | 3.50E-139 | 504.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010081.t1 | Q9LRH6 | 62.8 | 180 | 65 | 1 | 72 | 249 | 81 | 260 | 3.2e-53 | 210.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010081.t1 | G7JYF5 | 98.1 | 257 | 5 | 0 | 1 | 257 | 1 | 257 | 2.5e-139 | 504.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene010081.t1 | TF | C2C2-GATA |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010081.t1 | MTR_5g066510 | 98.054 | 257 | 5 | 0 | 1 | 257 | 1 | 257 | 0.0 | 531 |
MS.gene010081.t1 | MTR_5g066510 | 97.525 | 202 | 5 | 0 | 1 | 202 | 1 | 202 | 1.86e-147 | 413 |
MS.gene010081.t1 | MTR_3g100050 | 66.055 | 218 | 68 | 4 | 46 | 258 | 42 | 258 | 7.13e-92 | 276 |
MS.gene010081.t1 | MTR_3g100040 | 54.737 | 190 | 75 | 6 | 74 | 257 | 69 | 253 | 8.07e-57 | 188 |
MS.gene010081.t1 | MTR_4g093730 | 50.971 | 206 | 82 | 8 | 53 | 245 | 20 | 219 | 1.14e-55 | 184 |
MS.gene010081.t1 | MTR_3g100040 | 59.524 | 126 | 45 | 2 | 135 | 257 | 27 | 149 | 6.47e-45 | 154 |
MS.gene010081.t1 | MTR_1g061610 | 67.647 | 68 | 21 | 1 | 39 | 106 | 42 | 108 | 2.12e-23 | 93.6 |
MS.gene010081.t1 | MTR_4g008070 | 53.659 | 82 | 24 | 4 | 167 | 237 | 1 | 79 | 8.07e-18 | 77.8 |
MS.gene010081.t1 | MTR_3g060200 | 36.697 | 109 | 62 | 3 | 159 | 264 | 4 | 108 | 2.20e-14 | 73.2 |
MS.gene010081.t1 | MTR_3g060200 | 36.697 | 109 | 62 | 3 | 159 | 264 | 4 | 108 | 4.30e-14 | 72.8 |
MS.gene010081.t1 | MTR_3g060200 | 36.697 | 109 | 62 | 3 | 159 | 264 | 4 | 108 | 4.58e-14 | 72.8 |
MS.gene010081.t1 | MTR_3g060200 | 36.697 | 109 | 62 | 3 | 159 | 264 | 4 | 108 | 5.13e-14 | 73.2 |
MS.gene010081.t1 | MTR_4g008090 | 50.000 | 80 | 30 | 3 | 93 | 166 | 12 | 87 | 2.37e-12 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010081.t1 | AT4G24470 | 62.778 | 180 | 65 | 1 | 72 | 249 | 81 | 260 | 5.67e-73 | 228 |
MS.gene010081.t1 | AT4G24470 | 62.778 | 180 | 65 | 1 | 72 | 249 | 81 | 260 | 5.67e-73 | 228 |
MS.gene010081.t1 | AT4G24470 | 62.778 | 180 | 65 | 1 | 72 | 249 | 81 | 260 | 6.01e-73 | 228 |
MS.gene010081.t1 | AT1G51600 | 56.650 | 203 | 76 | 5 | 70 | 260 | 79 | 281 | 3.90e-68 | 215 |
MS.gene010081.t1 | AT1G51600 | 56.650 | 203 | 76 | 5 | 70 | 260 | 79 | 281 | 3.90e-68 | 215 |
MS.gene010081.t1 | AT3G21175 | 51.452 | 241 | 84 | 7 | 38 | 245 | 21 | 261 | 1.46e-67 | 214 |
MS.gene010081.t1 | AT3G21175 | 51.667 | 240 | 83 | 7 | 38 | 245 | 21 | 259 | 1.10e-66 | 211 |
MS.gene010081.t1 | AT3G21175 | 47.802 | 182 | 69 | 6 | 38 | 194 | 21 | 201 | 1.76e-37 | 133 |
MS.gene010081.t1 | AT2G46670 | 50.909 | 55 | 27 | 0 | 129 | 183 | 126 | 180 | 8.77e-11 | 60.8 |
Find 76 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAACTTTGAAGTGCAAATTC+AGG | 0.278085 | 5.2:-56486946 | None:intergenic |
ATGGCCCTCGCCGCATCATT+GGG | 0.283489 | 5.2:-56490012 | None:intergenic |
TCCAACTCCGATGCTGTTTA+CGG | 0.309806 | 5.2:+56486907 | MS.gene010081:CDS |
GATGGCCCTCGCCGCATCAT+TGG | 0.329482 | 5.2:-56490013 | None:intergenic |
TCGCTTTCGCCGGCGGTGAT+TGG | 0.347965 | 5.2:-56486811 | None:intergenic |
CTGGTCTGTACCACAACTAT+TGG | 0.364949 | 5.2:-56489743 | None:intergenic |
GTCTTCGAAGCATAAAATTC+AGG | 0.381687 | 5.2:-56494611 | None:intergenic |
GAAAGAAATACCTGCTCAAC+AGG | 0.391041 | 5.2:-56490892 | None:intergenic |
GGTCACTTTGCAATGCTTGT+GGG | 0.405446 | 5.2:+56490044 | MS.gene010081:CDS |
GGCGAAAGCGACGACGGTTC+CGG | 0.410307 | 5.2:+56486823 | MS.gene010081:CDS |
ATGATGCGGCGAGGGCCATC+TGG | 0.424046 | 5.2:+56490016 | MS.gene010081:CDS |
AAGCCTCATTACTTAGGTTC+CGG | 0.424048 | 5.2:+56488211 | MS.gene010081:CDS |
GTCGATGCCGGCGTCGGGAC+CGG | 0.425728 | 5.2:-56486842 | None:intergenic |
CAGCTTACGCTGTCGTTTCG+TGG | 0.436824 | 5.2:+56486982 | MS.gene010081:CDS |
AGGTCACTTTGCAATGCTTG+TGG | 0.439332 | 5.2:+56490043 | MS.gene010081:CDS |
TTTCTGATGGACTGGCATCC+TGG | 0.442732 | 5.2:-56489774 | None:intergenic |
TCAATCGGTGTTGTTACTGT+TGG | 0.455881 | 5.2:+56487260 | MS.gene010081:CDS |
CAATCGGTGTTGTTACTGTT+GGG | 0.455920 | 5.2:+56487261 | MS.gene010081:CDS |
AGATAATTCCTGATGTCTCT+TGG | 0.456240 | 5.2:-56490863 | None:intergenic |
ATCTTTCTTTCCTCTTCTGC+CGG | 0.458420 | 5.2:-56488230 | None:intergenic |
ATGTAGGATGCAGCGAAAGA+AGG | 0.464044 | 5.2:+56489687 | MS.gene010081:intron |
TGAGCGTCGATGCCGGCGTC+GGG | 0.466145 | 5.2:-56486847 | None:intergenic |
TTCCATGTTACAGGTTCAAT+CGG | 0.470149 | 5.2:+56487245 | MS.gene010081:intron |
ATCTACTGTACCTGTTGAGC+AGG | 0.474916 | 5.2:+56490882 | MS.gene010081:CDS |
CGGTGCCTCAACAAAGTTTG+AGG | 0.475750 | 5.2:+56487316 | MS.gene010081:CDS |
ATTGAGAATCGAACCTTAGC+AGG | 0.477071 | 5.2:-56487033 | None:intergenic |
CAAGCATTGCAAAGTGACCT+TGG | 0.478461 | 5.2:-56490040 | None:intergenic |
GCCGTAAACAGCATCGGAGT+TGG | 0.479472 | 5.2:-56486908 | None:intergenic |
TGTAGGATGCAGCGAAAGAA+GGG | 0.482115 | 5.2:+56489688 | MS.gene010081:intron |
TGGCATCCTGGCTAGAATCC+TGG | 0.494476 | 5.2:-56489762 | None:intergenic |
TCAGTACGAAACGCACGGTA+TGG | 0.494591 | 5.2:+56486879 | MS.gene010081:CDS |
TGACTCTGTTACGCCTGCTA+AGG | 0.495608 | 5.2:+56487020 | MS.gene010081:CDS |
ACCGCATTCACACCAGCATC+AGG | 0.496179 | 5.2:-56487297 | None:intergenic |
ATCGAGAAGCCTCATTACTT+AGG | 0.501589 | 5.2:+56488205 | MS.gene010081:CDS |
GGAACCGTCGTCGCTTTCGC+CGG | 0.503198 | 5.2:-56486821 | None:intergenic |
TACTTAGGTTCCGGCAGAAG+AGG | 0.507196 | 5.2:+56488220 | MS.gene010081:CDS |
GACGGTTCCGGTCCCGACGC+CGG | 0.509123 | 5.2:+56486835 | MS.gene010081:CDS |
ACTACATCTAAGAAACAAGA+TGG | 0.513677 | 5.2:+56489718 | MS.gene010081:CDS |
TCCGATGCTGTTTACGGCAA+CGG | 0.517634 | 5.2:+56486913 | MS.gene010081:CDS |
TTGAGCGTCGATGCCGGCGT+CGG | 0.518484 | 5.2:-56486848 | None:intergenic |
ATTGGTACTGTGGTGTTCAA+AGG | 0.519474 | 5.2:-56486793 | None:intergenic |
CGACCCCAATGATGCGGCGA+GGG | 0.521861 | 5.2:+56490008 | MS.gene010081:CDS |
AGACCTTTCCAAGAGACATC+AGG | 0.523306 | 5.2:+56490855 | MS.gene010081:CDS |
CAATGAACAGATTAGTAAAA+CGG | 0.524408 | 5.2:+56492903 | MS.gene010081:CDS |
TCACGAGATTTCTGATGGAC+TGG | 0.530433 | 5.2:-56489782 | None:intergenic |
GGTTGAGAGTGTTCGTACAT+TGG | 0.539771 | 5.2:-56486772 | None:intergenic |
ACCGTCGTCGCTTTCGCCGG+CGG | 0.540258 | 5.2:-56486818 | None:intergenic |
CAAAGTGACCTTGGACCAGA+TGG | 0.549647 | 5.2:-56490031 | None:intergenic |
TGAGAGTGTTCGTACATTGG+TGG | 0.550890 | 5.2:-56486769 | None:intergenic |
TTGATGTTGAGCGTCGATGC+CGG | 0.559465 | 5.2:-56486854 | None:intergenic |
TACAGACCAGGATTCTAGCC+AGG | 0.560530 | 5.2:+56489756 | MS.gene010081:CDS |
CAAGCTCACGAGATTTCTGA+TGG | 0.565628 | 5.2:-56489787 | None:intergenic |
CAATAGTTGTGGTACAGACC+AGG | 0.567890 | 5.2:+56489744 | MS.gene010081:CDS |
GGATGTGAACAACCTGATGC+TGG | 0.568670 | 5.2:+56487285 | MS.gene010081:CDS |
CTGCCGGAACCTAAGTAATG+AGG | 0.570375 | 5.2:-56488214 | None:intergenic |
ATTCCTGATGTCTCTTGGAA+AGG | 0.575092 | 5.2:-56490858 | None:intergenic |
GGTGCCTCAACAAAGTTTGA+GGG | 0.580121 | 5.2:+56487317 | MS.gene010081:CDS |
GCCGTTGCCGTAAACAGCAT+CGG | 0.590158 | 5.2:-56486914 | None:intergenic |
GGCGAGGGCCATCTGGTCCA+AGG | 0.590488 | 5.2:+56490023 | MS.gene010081:CDS |
CAAGATGGGTCCAATAGTTG+TGG | 0.595326 | 5.2:+56489733 | MS.gene010081:CDS |
TTAAATAGTTGCACACATTG+TGG | 0.601041 | 5.2:+56489971 | MS.gene010081:intron |
TTACTAATCTGTTCATTGCG+CGG | 0.612891 | 5.2:-56492898 | None:intergenic |
TCGGTGTTGTTACTGTTGGG+TGG | 0.618046 | 5.2:+56487264 | MS.gene010081:CDS |
TACGTCAAGAAGTTGCACTC+AGG | 0.620095 | 5.2:+56488280 | MS.gene010081:CDS |
ACCACCCTCAAACTTTGTTG+AGG | 0.626395 | 5.2:-56487321 | None:intergenic |
ACCGCCGGCGAAAGCGACGA+CGG | 0.634534 | 5.2:+56486817 | MS.gene010081:CDS |
CTACATCTAAGAAACAAGAT+GGG | 0.649224 | 5.2:+56489719 | MS.gene010081:CDS |
CAAAATCGACCCCAATGATG+CGG | 0.651595 | 5.2:+56490002 | MS.gene010081:CDS |
ACCACAGTACCAATCACCGC+CGG | 0.655305 | 5.2:+56486802 | MS.gene010081:CDS |
GCCTCAACAAAGTTTGAGGG+TGG | 0.655336 | 5.2:+56487320 | MS.gene010081:CDS |
TCGACCCCAATGATGCGGCG+AGG | 0.660240 | 5.2:+56490007 | MS.gene010081:CDS |
GATGCTGTTTACGGCAACGG+CGG | 0.661829 | 5.2:+56486916 | MS.gene010081:CDS |
ACCTGATGCTGGTGTGAATG+CGG | 0.662406 | 5.2:+56487296 | MS.gene010081:CDS |
GCCGGCGGTGATTGGTACTG+TGG | 0.669157 | 5.2:-56486803 | None:intergenic |
TGGCCCTCGCCGCATCATTG+GGG | 0.672900 | 5.2:-56490011 | None:intergenic |
CAAATTCAGTACGAAACGCA+CGG | 0.681403 | 5.2:+56486874 | MS.gene010081:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 56486763 | 56494713 | 56486763 | ID=MS.gene010081 |
chr5.2 | mRNA | 56486763 | 56494713 | 56486763 | ID=MS.gene010081.t1;Parent=MS.gene010081 |
chr5.2 | exon | 56486763 | 56487041 | 56486763 | ID=MS.gene010081.t1.exon1;Parent=MS.gene010081.t1 |
chr5.2 | CDS | 56486763 | 56487041 | 56486763 | ID=cds.MS.gene010081.t1;Parent=MS.gene010081.t1 |
chr5.2 | exon | 56487258 | 56487341 | 56487258 | ID=MS.gene010081.t1.exon2;Parent=MS.gene010081.t1 |
chr5.2 | CDS | 56487258 | 56487341 | 56487258 | ID=cds.MS.gene010081.t1;Parent=MS.gene010081.t1 |
chr5.2 | exon | 56488168 | 56488301 | 56488168 | ID=MS.gene010081.t1.exon3;Parent=MS.gene010081.t1 |
chr5.2 | CDS | 56488168 | 56488301 | 56488168 | ID=cds.MS.gene010081.t1;Parent=MS.gene010081.t1 |
chr5.2 | exon | 56489693 | 56489800 | 56489693 | ID=MS.gene010081.t1.exon4;Parent=MS.gene010081.t1 |
chr5.2 | CDS | 56489693 | 56489800 | 56489693 | ID=cds.MS.gene010081.t1;Parent=MS.gene010081.t1 |
chr5.2 | exon | 56489979 | 56490084 | 56489979 | ID=MS.gene010081.t1.exon5;Parent=MS.gene010081.t1 |
chr5.2 | CDS | 56489979 | 56490084 | 56489979 | ID=cds.MS.gene010081.t1;Parent=MS.gene010081.t1 |
chr5.2 | exon | 56490844 | 56490903 | 56490844 | ID=MS.gene010081.t1.exon6;Parent=MS.gene010081.t1 |
chr5.2 | CDS | 56490844 | 56490903 | 56490844 | ID=cds.MS.gene010081.t1;Parent=MS.gene010081.t1 |
chr5.2 | exon | 56492866 | 56492953 | 56492866 | ID=MS.gene010081.t1.exon7;Parent=MS.gene010081.t1 |
chr5.2 | CDS | 56492866 | 56492953 | 56492866 | ID=cds.MS.gene010081.t1;Parent=MS.gene010081.t1 |
chr5.2 | exon | 56494589 | 56494713 | 56494589 | ID=MS.gene010081.t1.exon8;Parent=MS.gene010081.t1 |
chr5.2 | CDS | 56494589 | 56494713 | 56494589 | ID=cds.MS.gene010081.t1;Parent=MS.gene010081.t1 |
Gene Sequence |
Protein sequence |