Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010101.t1 | XP_003615282.1 | 93.3 | 255 | 15 | 2 | 1 | 255 | 1 | 253 | 5.80E-126 | 460.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010101.t1 | Q9S7Y1 | 42.4 | 191 | 83 | 3 | 31 | 220 | 168 | 332 | 1.2e-26 | 121.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010101.t1 | G7KBK5 | 93.3 | 255 | 15 | 2 | 1 | 255 | 1 | 253 | 4.2e-126 | 460.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene010101.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010101.t1 | MTR_5g066080 | 93.333 | 255 | 15 | 2 | 1 | 255 | 1 | 253 | 1.98e-153 | 427 |
| MS.gene010101.t1 | MTR_1g093750 | 36.530 | 219 | 102 | 5 | 31 | 245 | 152 | 337 | 8.13e-28 | 109 |
| MS.gene010101.t1 | MTR_2g091190 | 39.506 | 162 | 73 | 1 | 30 | 191 | 52 | 188 | 1.59e-24 | 98.6 |
| MS.gene010101.t1 | MTR_5g032375 | 31.799 | 239 | 115 | 8 | 2 | 224 | 1 | 207 | 1.42e-22 | 92.4 |
| MS.gene010101.t1 | MTR_3g070970 | 30.049 | 203 | 101 | 3 | 31 | 223 | 67 | 238 | 2.70e-22 | 92.8 |
| MS.gene010101.t1 | MTR_4g079760 | 39.634 | 164 | 73 | 2 | 28 | 191 | 60 | 197 | 2.65e-21 | 90.1 |
| MS.gene010101.t1 | MTR_2g015890 | 35.714 | 168 | 80 | 2 | 33 | 200 | 63 | 202 | 2.76e-21 | 90.1 |
| MS.gene010101.t1 | MTR_2g015890 | 37.313 | 134 | 56 | 2 | 33 | 166 | 63 | 168 | 1.89e-17 | 79.0 |
| MS.gene010101.t1 | MTR_4g087920 | 32.836 | 201 | 91 | 4 | 30 | 220 | 68 | 234 | 9.98e-15 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010101.t1 | AT3G25710 | 38.835 | 206 | 82 | 5 | 33 | 220 | 128 | 307 | 7.14e-31 | 117 |
| MS.gene010101.t1 | AT3G56770 | 36.458 | 192 | 89 | 3 | 31 | 220 | 39 | 199 | 6.51e-30 | 112 |
| MS.gene010101.t1 | AT1G68810 | 40.761 | 184 | 77 | 3 | 9 | 191 | 152 | 304 | 2.57e-29 | 114 |
| MS.gene010101.t1 | AT2G41130 | 35.233 | 193 | 97 | 2 | 28 | 220 | 58 | 222 | 1.63e-25 | 101 |
| MS.gene010101.t1 | AT4G38070 | 35.465 | 172 | 78 | 4 | 29 | 199 | 83 | 222 | 1.88e-22 | 93.2 |
| MS.gene010101.t1 | AT2G40200 | 29.412 | 187 | 98 | 3 | 33 | 216 | 59 | 214 | 4.01e-19 | 84.3 |
Find 81 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTGAGACATGGCCGTTTC+CGG | 0.216545 | 5.2:-56084045 | MS.gene010101:CDS |
| CAACCTCACGAGCCCGTTTC+CGG | 0.259442 | 5.2:+56083691 | None:intergenic |
| AACCCGTAGAATCTTCTTAA+AGG | 0.270050 | 5.2:+56084574 | None:intergenic |
| CGCTAACAACGACGCCTTAT+CGG | 0.275455 | 5.2:+56084190 | None:intergenic |
| GGAGAAGGAGGTAGAAGCTT+TGG | 0.321763 | 5.2:-56083784 | MS.gene010101:CDS |
| CGTTTCCGGCCCAACAAAAT+CGG | 0.326862 | 5.2:+56083705 | None:intergenic |
| AAGAAGCATGCAAGAGTCAT+AGG | 0.355128 | 5.2:-56084480 | MS.gene010101:CDS |
| ACAAGCAATCCGTTCGGTTC+TGG | 0.360599 | 5.2:-56083907 | MS.gene010101:CDS |
| AAAGGTGAAGGTGGTGATAA+TGG | 0.377501 | 5.2:-56083813 | MS.gene010101:CDS |
| ACTGAGACATGGCCGTTTCC+GGG | 0.384662 | 5.2:-56084044 | MS.gene010101:CDS |
| TTATCACCACCTTCACCTTT+AGG | 0.394483 | 5.2:+56083816 | None:intergenic |
| TGAAAGCTGTTATAGAGAAT+CGG | 0.412837 | 5.2:-56083752 | MS.gene010101:CDS |
| CCGTTCGGTTCTGGCGAAAC+CGG | 0.414266 | 5.2:-56083898 | MS.gene010101:CDS |
| GGAGGTAGAAGCTTTGGAAA+GGG | 0.416970 | 5.2:-56083778 | MS.gene010101:CDS |
| GGCGTCGTTGTTAGCGGAAG+TGG | 0.431203 | 5.2:-56084183 | MS.gene010101:CDS |
| TGAATGACCTTTGTGGTGTT+AGG | 0.434067 | 5.2:+56084394 | None:intergenic |
| GAAAGCTGTTATAGAGAATC+GGG | 0.435771 | 5.2:-56083751 | MS.gene010101:CDS |
| GATTCTACGGGTTTGAGAGC+TGG | 0.437215 | 5.2:-56084564 | MS.gene010101:CDS |
| TATTGCGGTGGTAGAGAGGA+AGG | 0.446965 | 5.2:-56083996 | MS.gene010101:CDS |
| GACAAAGAGTGTTGTGGTGG+TGG | 0.449486 | 5.2:-56083844 | MS.gene010101:CDS |
| GTCATCATCTCAGCTCGAAC+CGG | 0.451864 | 5.2:+56083879 | None:intergenic |
| CCTCCTTTAAGAAGATTCTA+CGG | 0.460188 | 5.2:-56084577 | MS.gene010101:CDS |
| GAGGTAGAAGCTTTGGAAAG+GGG | 0.467743 | 5.2:-56083777 | MS.gene010101:CDS |
| GGATTGCTTGTGTTAGATCA+TGG | 0.468042 | 5.2:+56083919 | None:intergenic |
| GAAGAAGGAAGCTGATGAAA+TGG | 0.473728 | 5.2:-56084141 | MS.gene010101:CDS |
| CTCCTTTAAGAAGATTCTAC+GGG | 0.475979 | 5.2:-56084576 | MS.gene010101:CDS |
| TAATGGAAGAGAGGAGAAGG+AGG | 0.476276 | 5.2:-56083796 | MS.gene010101:CDS |
| CTTGTTGTTGAGGAAGAATG+AGG | 0.491130 | 5.2:-56083661 | MS.gene010101:CDS |
| ACACGTGAAACGGTCGAAGA+AGG | 0.492375 | 5.2:-56084156 | MS.gene010101:CDS |
| TCTTCATGCAGCGGAGAACC+TGG | 0.503192 | 5.2:-56084089 | MS.gene010101:CDS |
| CGATAAGGCGTCGTTGTTAG+CGG | 0.504065 | 5.2:-56084189 | MS.gene010101:CDS |
| GTTTCCGGCCCAACAAAATC+GGG | 0.508277 | 5.2:+56083706 | None:intergenic |
| AGGAGGTAGAAGCTTTGGAA+AGG | 0.513380 | 5.2:-56083779 | MS.gene010101:CDS |
| TCGTCTGATTCTCCCGGAAA+CGG | 0.515198 | 5.2:+56084032 | None:intergenic |
| TGATAATGGAAGAGAGGAGA+AGG | 0.516421 | 5.2:-56083799 | MS.gene010101:CDS |
| ATGGCGAATCGTCGCAATGA+CGG | 0.517551 | 5.2:-56084122 | MS.gene010101:CDS |
| AAGTGGTGCAACACGTGAAA+CGG | 0.520362 | 5.2:-56084166 | MS.gene010101:CDS |
| AGAAGCATGCAAGAGTCATA+GGG | 0.522990 | 5.2:-56084479 | MS.gene010101:CDS |
| GGGCCGGAAACGGGCTCGTG+AGG | 0.526347 | 5.2:-56083694 | MS.gene010101:CDS |
| TTGACTGTTCCTTGTTGTTG+AGG | 0.530398 | 5.2:-56083671 | MS.gene010101:CDS |
| ACCTGGTTCAGTTAATTCTA+CGG | 0.531153 | 5.2:-56084072 | MS.gene010101:CDS |
| GATGGATAATAAAGACTATG+AGG | 0.533000 | 5.2:-56084542 | MS.gene010101:CDS |
| GCTGAGATGATGACGGTTGG+AGG | 0.537478 | 5.2:-56083870 | MS.gene010101:CDS |
| AGTGTGTTGTGAGGATCGAC+CGG | 0.538414 | 5.2:-56083949 | MS.gene010101:CDS |
| GAGTTATTGCGGTGGTAGAG+AGG | 0.542449 | 5.2:-56084000 | MS.gene010101:CDS |
| AGGTGGTGATAATGGAAGAG+AGG | 0.544625 | 5.2:-56083805 | MS.gene010101:CDS |
| GTCGCCTCGTCTGATTCTCC+CGG | 0.551846 | 5.2:+56084026 | None:intergenic |
| GTGGAGTGGCCTAAAGGTGA+AGG | 0.554899 | 5.2:-56083825 | MS.gene010101:CDS |
| ATTGCGGTGGTAGAGAGGAA+GGG | 0.561452 | 5.2:-56083995 | MS.gene010101:CDS |
| TTGCGGTGGTAGAGAGGAAG+GGG | 0.563178 | 5.2:-56083994 | MS.gene010101:CDS |
| CGAGCTGAGATGATGACGGT+TGG | 0.565864 | 5.2:-56083873 | MS.gene010101:CDS |
| AGATGATGACGGTTGGAGGT+AGG | 0.573370 | 5.2:-56083866 | MS.gene010101:CDS |
| AGGTTCTCCGCTGCATGAAG+AGG | 0.577024 | 5.2:+56084091 | None:intergenic |
| CTACGGGTTTGAGAGCTGGA+TGG | 0.582407 | 5.2:-56084560 | MS.gene010101:CDS |
| GTGGTGGTGGAGTGGCCTAA+AGG | 0.584300 | 5.2:-56083831 | MS.gene010101:CDS |
| CTCATTCTTCCTCAACAACA+AGG | 0.601988 | 5.2:+56083662 | None:intergenic |
| CCGTAGAATCTTCTTAAAGG+AGG | 0.605275 | 5.2:+56084577 | None:intergenic |
| TCTAACACAAGCAATCCGTT+CGG | 0.605327 | 5.2:-56083913 | MS.gene010101:CDS |
| TGACCTTTGTGGTGTTAGGA+AGG | 0.606748 | 5.2:+56084398 | None:intergenic |
| TCCGTAGAATTAACTGAACC+AGG | 0.607098 | 5.2:+56084071 | None:intergenic |
| AATGGAATGAATGACCTTTG+TGG | 0.614221 | 5.2:+56084387 | None:intergenic |
| GTTAGATCATGGTTCAGACC+CGG | 0.622519 | 5.2:+56083930 | None:intergenic |
| GTGTGTTGTGAGGATCGACC+GGG | 0.625955 | 5.2:-56083948 | MS.gene010101:CDS |
| GAGTCTTCCTCTTCATGCAG+CGG | 0.627449 | 5.2:-56084098 | MS.gene010101:CDS |
| AGAGTCATAGGGAAGCTGAA+AGG | 0.630828 | 5.2:-56084468 | MS.gene010101:CDS |
| CCGGTTTCGCCAGAACCGAA+CGG | 0.637182 | 5.2:+56083898 | None:intergenic |
| GTAGAGAGGAAGGGGAACCA+CGG | 0.640152 | 5.2:-56083986 | MS.gene010101:CDS |
| CTACGGAGGTAACTGAGACA+TGG | 0.643428 | 5.2:-56084055 | MS.gene010101:CDS |
| GAGTGGCCTAAAGGTGAAGG+TGG | 0.645085 | 5.2:-56083822 | MS.gene010101:CDS |
| AGAGTGTTGTGGTGGTGGAG+TGG | 0.646685 | 5.2:-56083839 | MS.gene010101:CDS |
| ACTGTCACTTTCATCCTCCG+TGG | 0.656210 | 5.2:+56083969 | None:intergenic |
| TAGGACAAAGAGTGTTGTGG+TGG | 0.658865 | 5.2:-56083847 | MS.gene010101:CDS |
| GAGGCGACAGTGAGTTATTG+CGG | 0.669787 | 5.2:-56084011 | MS.gene010101:CDS |
| GAGAGGAAGGGGAACCACGG+AGG | 0.671020 | 5.2:-56083983 | MS.gene010101:CDS |
| AGGTAGGACAAAGAGTGTTG+TGG | 0.684138 | 5.2:-56083850 | MS.gene010101:CDS |
| TGGTTCAGTTAATTCTACGG+AGG | 0.696147 | 5.2:-56084069 | MS.gene010101:CDS |
| GGTTCGAGCTGAGATGATGA+CGG | 0.696578 | 5.2:-56083877 | MS.gene010101:CDS |
| TCTCCTTCCTAACACCACAA+AGG | 0.703951 | 5.2:-56084401 | MS.gene010101:intron |
| GAAAGTGACAGTGTGTTGTG+AGG | 0.711096 | 5.2:-56083958 | MS.gene010101:CDS |
| GCGACAGTGAGTTATTGCGG+TGG | 0.734204 | 5.2:-56084008 | MS.gene010101:CDS |
| GTTTCCGGGAGAATCAGACG+AGG | 0.775354 | 5.2:-56084030 | MS.gene010101:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAAAAATATCTGTTTTAG+TGG | - | chr5.2:56083966-56083985 | MS.gene010101:CDS | 15.0% |
| !!! | TCATTTGTTTCTTATAAAAA+TGG | + | chr5.2:56083920-56083939 | None:intergenic | 15.0% |
| !! | TCAACAAAAATTAATGTATC+TGG | - | chr5.2:56083941-56083960 | MS.gene010101:CDS | 20.0% |
| ! | AAGAATGTGAAGTTATGAAA+TGG | + | chr5.2:56083872-56083891 | None:intergenic | 25.0% |
| ! | TCTTATAAAAATGGACATGA+GGG | + | chr5.2:56083911-56083930 | None:intergenic | 25.0% |
| ! | TTCTTATAAAAATGGACATG+AGG | + | chr5.2:56083912-56083931 | None:intergenic | 25.0% |
| !!! | AAAAATATCTGTTTTAGTGG+TGG | - | chr5.2:56083969-56083988 | MS.gene010101:CDS | 25.0% |
| GATGGATAATAAAGACTATG+AGG | - | chr5.2:56083691-56083710 | MS.gene010101:CDS | 30.0% | |
| TGAAAGCTGTTATAGAGAAT+CGG | - | chr5.2:56084481-56084500 | MS.gene010101:CDS | 30.0% | |
| TGTGAAGTTATGAAATGGAA+TGG | + | chr5.2:56083867-56083886 | None:intergenic | 30.0% | |
| AACCCGTAGAATCTTCTTAA+AGG | + | chr5.2:56083662-56083681 | None:intergenic | 35.0% | |
| AATGGAATGAATGACCTTTG+TGG | + | chr5.2:56083849-56083868 | None:intergenic | 35.0% | |
| ACCTGGTTCAGTTAATTCTA+CGG | - | chr5.2:56084161-56084180 | MS.gene010101:CDS | 35.0% | |
| GAAAGCTGTTATAGAGAATC+GGG | - | chr5.2:56084482-56084501 | MS.gene010101:CDS | 35.0% | |
| ! | ATTTTATGTGCAGTCCGATA+AGG | - | chr5.2:56084029-56084048 | MS.gene010101:CDS | 35.0% |
| ! | CCTCCTTTAAGAAGATTCTA+CGG | - | chr5.2:56083656-56083675 | MS.gene010101:CDS | 35.0% |
| ! | CTCCTTTAAGAAGATTCTAC+GGG | - | chr5.2:56083657-56083676 | MS.gene010101:CDS | 35.0% |
| AAAGGTGAAGGTGGTGATAA+TGG | - | chr5.2:56084420-56084439 | MS.gene010101:CDS | 40.0% | |
| CCGTAGAATCTTCTTAAAGG+AGG | + | chr5.2:56083659-56083678 | None:intergenic | 40.0% | |
| CTCATTCTTCCTCAACAACA+AGG | + | chr5.2:56084574-56084593 | None:intergenic | 40.0% | |
| GAAGAAGGAAGCTGATGAAA+TGG | - | chr5.2:56084092-56084111 | MS.gene010101:CDS | 40.0% | |
| GGATTGCTTGTGTTAGATCA+TGG | + | chr5.2:56084317-56084336 | None:intergenic | 40.0% | |
| TCCGTAGAATTAACTGAACC+AGG | + | chr5.2:56084165-56084184 | None:intergenic | 40.0% | |
| TCTAACACAAGCAATCCGTT+CGG | - | chr5.2:56084320-56084339 | MS.gene010101:intron | 40.0% | |
| TGAATGACCTTTGTGGTGTT+AGG | + | chr5.2:56083842-56083861 | None:intergenic | 40.0% | |
| TGGTTCAGTTAATTCTACGG+AGG | - | chr5.2:56084164-56084183 | MS.gene010101:CDS | 40.0% | |
| TTATCACCACCTTCACCTTT+AGG | + | chr5.2:56084420-56084439 | None:intergenic | 40.0% | |
| ! | AAGAAGCATGCAAGAGTCAT+AGG | - | chr5.2:56083753-56083772 | MS.gene010101:CDS | 40.0% |
| ! | AGAAGCATGCAAGAGTCATA+GGG | - | chr5.2:56083754-56083773 | MS.gene010101:CDS | 40.0% |
| ! | TATAGAGAATCGGGCTTTTG+TGG | - | chr5.2:56084491-56084510 | MS.gene010101:CDS | 40.0% |
| !! | CTTGTTGTTGAGGAAGAATG+AGG | - | chr5.2:56084572-56084591 | MS.gene010101:CDS | 40.0% |
| !! | TGATAATGGAAGAGAGGAGA+AGG | - | chr5.2:56084434-56084453 | MS.gene010101:CDS | 40.0% |
| !! | TTGACTGTTCCTTGTTGTTG+AGG | - | chr5.2:56084562-56084581 | MS.gene010101:CDS | 40.0% |
| AAGTGGTGCAACACGTGAAA+CGG | - | chr5.2:56084067-56084086 | MS.gene010101:CDS | 45.0% | |
| AGAGTCATAGGGAAGCTGAA+AGG | - | chr5.2:56083765-56083784 | MS.gene010101:CDS | 45.0% | |
| GAAAGTGACAGTGTGTTGTG+AGG | - | chr5.2:56084275-56084294 | MS.gene010101:intron | 45.0% | |
| GTTAGATCATGGTTCAGACC+CGG | + | chr5.2:56084306-56084325 | None:intergenic | 45.0% | |
| TAATGGAAGAGAGGAGAAGG+AGG | - | chr5.2:56084437-56084456 | MS.gene010101:CDS | 45.0% | |
| TCTCCTTCCTAACACCACAA+AGG | - | chr5.2:56083832-56083851 | MS.gene010101:CDS | 45.0% | |
| ! | AATCGGGCTTTTGTGGATTC+TGG | - | chr5.2:56084498-56084517 | MS.gene010101:CDS | 45.0% |
| ! | ATCGGGCTTTTGTGGATTCT+GGG | - | chr5.2:56084499-56084518 | MS.gene010101:CDS | 45.0% |
| ! | GCTTTTGTGGATTCTGGGTT+GGG | - | chr5.2:56084504-56084523 | MS.gene010101:CDS | 45.0% |
| ! | TGACCTTTGTGGTGTTAGGA+AGG | + | chr5.2:56083838-56083857 | None:intergenic | 45.0% |
| !! | AGGAGGTAGAAGCTTTGGAA+AGG | - | chr5.2:56084454-56084473 | MS.gene010101:CDS | 45.0% |
| !! | AGGTAGGACAAAGAGTGTTG+TGG | - | chr5.2:56084383-56084402 | MS.gene010101:intron | 45.0% |
| !! | AGGTGGTGATAATGGAAGAG+AGG | - | chr5.2:56084428-56084447 | MS.gene010101:CDS | 45.0% |
| !! | GAGGTAGAAGCTTTGGAAAG+GGG | - | chr5.2:56084456-56084475 | MS.gene010101:CDS | 45.0% |
| !! | GGAGGTAGAAGCTTTGGAAA+GGG | - | chr5.2:56084455-56084474 | MS.gene010101:CDS | 45.0% |
| !! | TAGGACAAAGAGTGTTGTGG+TGG | - | chr5.2:56084386-56084405 | MS.gene010101:intron | 45.0% |
| !! | TTTAGTGGTGGCTCTGAACA+CGG | - | chr5.2:56083981-56084000 | MS.gene010101:CDS | 45.0% |
| AACTGAGACATGGCCGTTTC+CGG | - | chr5.2:56084188-56084207 | MS.gene010101:CDS | 50.0% | |
| ACAAGCAATCCGTTCGGTTC+TGG | - | chr5.2:56084326-56084345 | MS.gene010101:intron | 50.0% | |
| ACACGTGAAACGGTCGAAGA+AGG | - | chr5.2:56084077-56084096 | MS.gene010101:CDS | 50.0% | |
| AGTGTGTTGTGAGGATCGAC+CGG | - | chr5.2:56084284-56084303 | MS.gene010101:intron | 50.0% | |
| ATGGCGAATCGTCGCAATGA+CGG | - | chr5.2:56084111-56084130 | MS.gene010101:CDS | 50.0% | |
| ATTGCGGTGGTAGAGAGGAA+GGG | - | chr5.2:56084238-56084257 | MS.gene010101:intron | 50.0% | |
| CGCTAACAACGACGCCTTAT+CGG | + | chr5.2:56084046-56084065 | None:intergenic | 50.0% | |
| CGTTTCCGGCCCAACAAAAT+CGG | + | chr5.2:56084531-56084550 | None:intergenic | 50.0% | |
| CTACGGAGGTAACTGAGACA+TGG | - | chr5.2:56084178-56084197 | MS.gene010101:CDS | 50.0% | |
| GAGGCGACAGTGAGTTATTG+CGG | - | chr5.2:56084222-56084241 | MS.gene010101:intron | 50.0% | |
| GAGTCTTCCTCTTCATGCAG+CGG | - | chr5.2:56084135-56084154 | MS.gene010101:CDS | 50.0% | |
| GAGTTATTGCGGTGGTAGAG+AGG | - | chr5.2:56084233-56084252 | MS.gene010101:intron | 50.0% | |
| GATTCTACGGGTTTGAGAGC+TGG | - | chr5.2:56083669-56083688 | MS.gene010101:CDS | 50.0% | |
| GGAGAAGGAGGTAGAAGCTT+TGG | - | chr5.2:56084449-56084468 | MS.gene010101:CDS | 50.0% | |
| GGTTCGAGCTGAGATGATGA+CGG | - | chr5.2:56084356-56084375 | MS.gene010101:intron | 50.0% | |
| GTCATCATCTCAGCTCGAAC+CGG | + | chr5.2:56084357-56084376 | None:intergenic | 50.0% | |
| GTTTCCGGCCCAACAAAATC+GGG | + | chr5.2:56084530-56084549 | None:intergenic | 50.0% | |
| TATTGCGGTGGTAGAGAGGA+AGG | - | chr5.2:56084237-56084256 | MS.gene010101:intron | 50.0% | |
| TCGTCTGATTCTCCCGGAAA+CGG | + | chr5.2:56084204-56084223 | None:intergenic | 50.0% | |
| ! | CGATTTTGTTGGGCCGGAAA+CGG | - | chr5.2:56084529-56084548 | MS.gene010101:CDS | 50.0% |
| ! | GATTTTGTTGGGCCGGAAAC+GGG | - | chr5.2:56084530-56084549 | MS.gene010101:CDS | 50.0% |
| ! | GGCTTTTGTGGATTCTGGGT+TGG | - | chr5.2:56084503-56084522 | MS.gene010101:CDS | 50.0% |
| !! | ACTGTCACTTTCATCCTCCG+TGG | + | chr5.2:56084267-56084286 | None:intergenic | 50.0% |
| !! | AGATGATGACGGTTGGAGGT+AGG | - | chr5.2:56084367-56084386 | MS.gene010101:intron | 50.0% |
| !! | CGATAAGGCGTCGTTGTTAG+CGG | - | chr5.2:56084044-56084063 | MS.gene010101:CDS | 50.0% |
| !! | GACAAAGAGTGTTGTGGTGG+TGG | - | chr5.2:56084389-56084408 | MS.gene010101:intron | 50.0% |
| ACTGAGACATGGCCGTTTCC+GGG | - | chr5.2:56084189-56084208 | MS.gene010101:CDS | 55.0% | |
| AGGTTCTCCGCTGCATGAAG+AGG | + | chr5.2:56084145-56084164 | None:intergenic | 55.0% | |
| CTACGGGTTTGAGAGCTGGA+TGG | - | chr5.2:56083673-56083692 | MS.gene010101:CDS | 55.0% | |
| GAGTGGCCTAAAGGTGAAGG+TGG | - | chr5.2:56084411-56084430 | MS.gene010101:CDS | 55.0% | |
| GCGACAGTGAGTTATTGCGG+TGG | - | chr5.2:56084225-56084244 | MS.gene010101:intron | 55.0% | |
| GTAGAGAGGAAGGGGAACCA+CGG | - | chr5.2:56084247-56084266 | MS.gene010101:intron | 55.0% | |
| GTGGAGTGGCCTAAAGGTGA+AGG | - | chr5.2:56084408-56084427 | MS.gene010101:CDS | 55.0% | |
| GTGTGTTGTGAGGATCGACC+GGG | - | chr5.2:56084285-56084304 | MS.gene010101:intron | 55.0% | |
| GTTTCCGGGAGAATCAGACG+AGG | - | chr5.2:56084203-56084222 | MS.gene010101:intron | 55.0% | |
| TCTTCATGCAGCGGAGAACC+TGG | - | chr5.2:56084144-56084163 | MS.gene010101:CDS | 55.0% | |
| TTGCGGTGGTAGAGAGGAAG+GGG | - | chr5.2:56084239-56084258 | MS.gene010101:intron | 55.0% | |
| ! | GGGTTGGGCCCGATTTTGTT+GGG | - | chr5.2:56084519-56084538 | MS.gene010101:CDS | 55.0% |
| !! | AGAGTGTTGTGGTGGTGGAG+TGG | - | chr5.2:56084394-56084413 | MS.gene010101:intron | 55.0% |
| !! | CGAGCTGAGATGATGACGGT+TGG | - | chr5.2:56084360-56084379 | MS.gene010101:intron | 55.0% |
| !! | GCTGAGATGATGACGGTTGG+AGG | - | chr5.2:56084363-56084382 | MS.gene010101:intron | 55.0% |
| !! | TGGGTTGGGCCCGATTTTGT+TGG | - | chr5.2:56084518-56084537 | MS.gene010101:CDS | 55.0% |
| CAACCTCACGAGCCCGTTTC+CGG | + | chr5.2:56084545-56084564 | None:intergenic | 60.0% | |
| CCGGTTTCGCCAGAACCGAA+CGG | + | chr5.2:56084338-56084357 | None:intergenic | 60.0% | |
| GGCGTCGTTGTTAGCGGAAG+TGG | - | chr5.2:56084050-56084069 | MS.gene010101:CDS | 60.0% | |
| GTCGCCTCGTCTGATTCTCC+CGG | + | chr5.2:56084210-56084229 | None:intergenic | 60.0% | |
| ! | CCGTTCGGTTCTGGCGAAAC+CGG | - | chr5.2:56084335-56084354 | MS.gene010101:intron | 60.0% |
| ! | TGGGCCCGATTTTGTTGGGC+CGG | - | chr5.2:56084523-56084542 | MS.gene010101:CDS | 60.0% |
| !! | GTGGTGGTGGAGTGGCCTAA+AGG | - | chr5.2:56084402-56084421 | MS.gene010101:CDS | 60.0% |
| GAGAGGAAGGGGAACCACGG+AGG | - | chr5.2:56084250-56084269 | MS.gene010101:intron | 65.0% | |
| ! | GGGCCGGAAACGGGCTCGTG+AGG | - | chr5.2:56084539-56084558 | MS.gene010101:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 56083650 | 56084605 | 56083650 | ID=MS.gene010101 |
| chr5.2 | mRNA | 56083650 | 56084605 | 56083650 | ID=MS.gene010101.t1;Parent=MS.gene010101 |
| chr5.2 | exon | 56084402 | 56084605 | 56084402 | ID=MS.gene010101.t1.exon1;Parent=MS.gene010101.t1 |
| chr5.2 | CDS | 56084402 | 56084605 | 56084402 | ID=cds.MS.gene010101.t1;Parent=MS.gene010101.t1 |
| chr5.2 | exon | 56083650 | 56084213 | 56083650 | ID=MS.gene010101.t1.exon2;Parent=MS.gene010101.t1 |
| chr5.2 | CDS | 56083650 | 56084213 | 56083650 | ID=cds.MS.gene010101.t1;Parent=MS.gene010101.t1 |
| Gene Sequence |
| Protein sequence |
