AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene010137

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010137.t1 MTR_5g075390 85.965 171 24 0 1 171 67 237 9.50e-99 292
MS.gene010137.t1 MTR_5g075390 79.487 78 16 0 171 248 90 167 8.24e-38 135
MS.gene010137.t1 MTR_3g467120 60.465 215 48 5 1 180 54 266 2.40e-73 228
MS.gene010137.t1 MTR_3g467120 41.818 110 30 4 171 248 78 185 4.33e-15 74.3
MS.gene010137.t1 MTR_3g094020 61.905 147 49 1 25 171 47 186 3.04e-50 167
MS.gene010137.t1 MTR_2g099050 48.705 193 55 4 23 171 107 299 4.96e-42 148
MS.gene010137.t1 MTR_6g034945 59.231 130 50 3 45 172 102 230 1.05e-36 132
MS.gene010137.t1 MTR_4g072090 68.367 98 31 0 78 175 345 442 7.09e-34 127
MS.gene010137.t1 MTR_4g072090 70.213 94 28 0 78 171 345 438 1.62e-33 127
MS.gene010137.t1 MTR_1g023690 56.897 116 50 0 78 193 372 487 2.35e-20 90.1
MS.gene010137.t1 MTR_1g099030 38.017 121 70 3 37 157 73 188 4.76e-13 67.8
MS.gene010137.t1 MTR_2g090900 46.250 80 43 0 92 171 190 269 7.89e-13 67.4
MS.gene010137.t1 MTR_2g090900 46.250 80 43 0 92 171 190 269 9.87e-13 67.4
MS.gene010137.t1 MTR_4g079500 45.946 74 40 0 92 165 193 266 1.68e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010137.t1 AT2G40620 60.215 186 51 4 2 171 48 226 6.58e-60 193
MS.gene010137.t1 AT2G40620 42.268 97 33 3 171 248 64 156 2.22e-12 66.2
MS.gene010137.t1 AT1G06850 55.696 158 55 3 28 171 70 226 9.59e-48 161
MS.gene010137.t1 AT2G31370 50.267 187 56 5 23 172 94 280 9.43e-43 149
MS.gene010137.t1 AT2G31370 50.267 187 56 5 23 172 94 280 1.45e-42 149
MS.gene010137.t1 AT2G31370 50.267 187 56 5 23 172 94 280 1.45e-42 149
MS.gene010137.t1 AT2G31370 50.267 187 56 5 23 172 94 280 1.45e-42 149
MS.gene010137.t1 AT2G31370 50.267 187 56 5 23 172 94 280 1.45e-42 149
MS.gene010137.t1 AT2G31370 50.267 187 56 5 23 172 94 280 1.45e-42 149
MS.gene010137.t1 AT2G31370 50.267 187 56 5 23 172 94 280 1.45e-42 149
MS.gene010137.t1 AT1G06070 47.514 181 63 3 23 171 108 288 1.03e-39 142
MS.gene010137.t1 AT1G06850 51.111 135 51 3 28 148 70 203 7.23e-35 125
MS.gene010137.t1 AT4G38900 71.277 94 27 0 78 171 379 472 2.83e-33 127
MS.gene010137.t1 AT4G38900 71.277 94 27 0 78 171 379 472 2.83e-33 127
MS.gene010137.t1 AT1G43700 68.041 97 29 1 77 171 176 272 6.85e-33 122
MS.gene010137.t1 AT4G38900 67.000 100 27 1 78 171 379 478 6.56e-31 120
MS.gene010137.t1 AT2G21230 65.957 94 32 0 78 171 355 448 2.53e-30 117
MS.gene010137.t1 AT2G21230 65.957 94 32 0 78 171 355 448 5.94e-30 117
MS.gene010137.t1 AT2G21230 65.957 94 32 0 78 171 355 448 7.10e-30 117
MS.gene010137.t1 AT2G21230 65.957 94 32 0 78 171 355 448 7.10e-30 117
MS.gene010137.t1 AT3G58120 42.857 84 48 0 93 176 202 285 3.62e-13 68.2
MS.gene010137.t1 AT2G42380 45.000 80 44 0 92 171 185 264 4.69e-13 67.4
MS.gene010137.t1 AT2G42380 47.297 74 39 0 92 165 185 258 1.40e-12 66.6
MS.gene010137.t1 AT3G58120 47.945 73 38 0 93 165 202 274 1.50e-12 66.6
MS.gene010137.t1 AT2G12900 33.696 92 61 0 93 184 116 207 2.66e-11 62.4
MS.gene010137.t1 AT2G12940 34.409 93 60 1 79 171 135 226 3.06e-11 62.8

Find 70 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGACATCGGCACAATAATT+TGG 0.242899 5.2:+55314707 MS.gene010137:CDS
GTCATTGGGTCGAGTTTGTT+TGG 0.270016 5.2:+55312146 MS.gene010137:CDS
TTGTTTGGGGAGACTATAGA+TGG 0.281473 5.2:+55312161 MS.gene010137:CDS
GTCGTTGGGTTGAGTTCGTT+TGG 0.295731 5.2:+55314729 MS.gene010137:CDS
CGACATAATAATTTGGTCAT+TGG 0.303981 5.2:+55312131 MS.gene010137:CDS
GAGACATCGACATAATAATT+TGG 0.326453 5.2:+55312124 MS.gene010137:CDS
CAAAGCTCAGCCAACTTATC+AGG 0.329404 5.2:-55312200 None:intergenic
TCATTGGGTCGAGTTTGTTT+GGG 0.335881 5.2:+55312147 MS.gene010137:CDS
CAAAGCTCAGCCAACTTATC+AGG 0.343237 5.2:-55314783 None:intergenic
TCGTTGGGTTGAGTTCGTTT+GGG 0.362752 5.2:+55314730 MS.gene010137:CDS
TGGAGATGCTGGAGCAGATC+CGG 0.379190 5.2:+55312064 MS.gene010137:CDS
TGGAGATGCTGGAGCAGATC+CGG 0.379190 5.2:+55314647 MS.gene010137:CDS
CTGATAAGTTGGCTGAGCTT+TGG 0.398977 5.2:+55312201 MS.gene010137:CDS
CTGATAAGTTGGCTGAGCTT+TGG 0.400539 5.2:+55314784 MS.gene010137:CDS
TTCGCACATTTAGGATCAAC+AGG 0.413831 5.2:-55312224 None:intergenic
GAGTTCGTTTGGGGAGACTA+TGG 0.418532 5.2:+55314740 MS.gene010137:CDS
GACATAATAATTTGGTCATT+GGG 0.421535 5.2:+55312132 MS.gene010137:CDS
GGCACAATAATTTGGTCGTT+GGG 0.432993 5.2:+55314715 MS.gene010137:CDS
CGGCACAATAATTTGGTCGT+TGG 0.438010 5.2:+55314714 MS.gene010137:CDS
CGAAGGGGCAGAGAAGAATC+AGG 0.454515 5.2:+55312094 MS.gene010137:CDS
TGAATGGATCGGACGGGGAG+AGG 0.474920 5.2:-55311959 None:intergenic
TCTGCCCCTTCGTTTCCTCC+CGG 0.478769 5.2:-55312083 None:intergenic
CGAAGAGGCAGAGAAGAATC+CGG 0.481169 5.2:+55314677 MS.gene010137:CDS
TCTGCCTCTTCGCTTCCTCC+CGG 0.484387 5.2:-55314666 None:intergenic
AGCTATGTCTCCTGATAAGT+TGG 0.488757 5.2:+55312190 MS.gene010137:CDS
AGCTATGCCTCCTGATAAGT+TGG 0.499388 5.2:+55314773 MS.gene010137:CDS
ATGGACAGACTTGGAGATGC+TGG 0.503770 5.2:+55312053 MS.gene010137:CDS
ATGGACAGACTTGGAGATGC+TGG 0.503770 5.2:+55314636 MS.gene010137:CDS
TGCCCAACTGACACTATACC+AGG 0.512274 5.2:+55314048 MS.gene010137:CDS
GTTGATGATCTGCCGGTGAA+TGG 0.513134 5.2:-55311975 None:intergenic
TGCTCATTCAAAAGAGAGAA+AGG 0.514267 5.2:+55313961 MS.gene010137:CDS
TTGATCCTAAATGTGCGAAA+AGG 0.514958 5.2:+55314811 MS.gene010137:CDS
TACATTGACATGGACAGACT+TGG 0.516336 5.2:+55312044 MS.gene010137:CDS
TACATTGACATGGACAGACT+TGG 0.516336 5.2:+55314627 MS.gene010137:CDS
TCGTTTGGGGAGACTATGGA+TGG 0.520293 5.2:+55314744 MS.gene010137:CDS
GCAGATCCGGGAGGAAACGA+AGG 0.527514 5.2:+55312077 MS.gene010137:CDS
TAAGCTCCGTCCGCAAGCAA+TGG 0.531437 5.2:+55314513 MS.gene010137:CDS
CAGATCCGGGAGGAAACGAA+GGG 0.534632 5.2:+55312078 MS.gene010137:CDS
TTGATCCTAAATGTGCGAAA+AGG 0.537313 5.2:+55312228 MS.gene010137:CDS
GGAGATGCTGGAGCAGATCC+GGG 0.539976 5.2:+55312065 MS.gene010137:CDS
GGAGATGCTGGAGCAGATCC+GGG 0.539976 5.2:+55314648 MS.gene010137:CDS
GTTGCTCCATTGCTTGCGGA+CGG 0.540579 5.2:-55314519 None:intergenic
TGCCGGTGAATGGATCGGAC+GGG 0.541814 5.2:-55311965 None:intergenic
AACCTGGTATAGTGTCAGTT+GGG 0.543208 5.2:-55314050 None:intergenic
TCCCCGTCCGATCCATTCAC+CGG 0.545509 5.2:+55311963 MS.gene010137:CDS
GCCGGTGAATGGATCGGACG+GGG 0.546664 5.2:-55311964 None:intergenic
TGTTTGGGGAGACTATAGAT+GGG 0.548419 5.2:+55312162 MS.gene010137:CDS
GAGTTGTAGCATCAGTCTGT+AGG 0.551575 5.2:-55314021 None:intergenic
CTGCCGGTGAATGGATCGGA+CGG 0.557304 5.2:-55311966 None:intergenic
AAACCTGGTATAGTGTCAGT+TGG 0.558403 5.2:-55314051 None:intergenic
AGTTGTAGCATCAGTCTGTA+GGG 0.565606 5.2:-55314020 None:intergenic
GCTAGCAGTTGATGATCTGC+CGG 0.567306 5.2:-55311982 None:intergenic
TGCCGATGTCTCAACCTCAC+CGG 0.569694 5.2:-55314696 None:intergenic
CGTTGGGTTGAGTTCGTTTG+GGG 0.570030 5.2:+55314731 MS.gene010137:CDS
CAACAAACACATCTTCATGA+TGG 0.580671 5.2:+55314538 MS.gene010137:CDS
ACTGCTAGCCTCGATGAGAT+CGG 0.580821 5.2:+55311996 MS.gene010137:CDS
TTTCGCACATTTAGGATCAA+CGG 0.584714 5.2:-55314808 None:intergenic
CATTGGGTCGAGTTTGTTTG+GGG 0.585199 5.2:+55312148 MS.gene010137:CDS
TGATCTGCCGGTGAATGGAT+CGG 0.590158 5.2:-55311970 None:intergenic
ATCCGGTGAGGTTGAGACAT+CGG 0.592715 5.2:+55314694 MS.gene010137:CDS
GTTTGTTGCTCCATTGCTTG+CGG 0.611180 5.2:-55314523 None:intergenic
AGCTCAGCCAACTTATCAGG+AGG 0.632846 5.2:-55314780 None:intergenic
AGATCCGGGAGGAAGCGAAG+AGG 0.647845 5.2:+55314662 MS.gene010137:CDS
CGTTTGGGGAGACTATGGAT+GGG 0.670001 5.2:+55314745 MS.gene010137:CDS
GGGCAGAGAAGAATCAGGTG+AGG 0.681356 5.2:+55312099 MS.gene010137:CDS
AGGCAGAGAAGAATCCGGTG+AGG 0.692593 5.2:+55314682 MS.gene010137:CDS
CTTCGGATCCGATCTCATCG+AGG 0.697774 5.2:-55312004 None:intergenic
GATGCTGGAGCAGATCCGGG+AGG 0.709228 5.2:+55312068 MS.gene010137:CDS
GATGCTGGAGCAGATCCGGG+AGG 0.709228 5.2:+55314651 MS.gene010137:CDS
AGATCCGGGAGGAAACGAAG+GGG 0.720038 5.2:+55312079 MS.gene010137:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGGTAAAATAAATTAATA+AGG + chr5.2:55312412-55312431 MS.gene010137:intron 10.0%
!! TTATACAAAAAGATTCTTAA+TGG - chr5.2:55313534-55313553 None:intergenic 15.0%
!!! ATTAGTTAATTTTTCAATGA+TGG + chr5.2:55312298-55312317 MS.gene010137:intron 15.0%
!!! TCATATTTTTTAGCTATAAA+TGG - chr5.2:55314227-55314246 None:intergenic 15.0%
!!! TCTAGAACATTTTATATAAA+AGG - chr5.2:55314288-55314307 None:intergenic 15.0%
!!! TGATTTTCTTTTATTAGTTT+AGG + chr5.2:55312369-55312388 MS.gene010137:intron 15.0%
!!! TTAGTTAATTTTTCAATGAT+GGG + chr5.2:55312299-55312318 MS.gene010137:intron 15.0%
!!! TTGAAATTTTTGAATAGTTT+GGG + chr5.2:55313184-55313203 MS.gene010137:intron 15.0%
!!! TTTTTTTTTATATAGTGATG+AGG + chr5.2:55313445-55313464 MS.gene010137:intron 15.0%
!! AATTTATGATTAGAGATTAG+AGG + chr5.2:55313508-55313527 MS.gene010137:intron 20.0%
!! ATCTTTAACATATTGTAAGA+AGG - chr5.2:55314576-55314595 None:intergenic 20.0%
!! TCTTTAACATATTGTAAGAA+GGG - chr5.2:55314575-55314594 None:intergenic 20.0%
!!! AACCAAGAAAAAACATTTTT+AGG + chr5.2:55312979-55312998 MS.gene010137:intron 20.0%
!!! AAGAAAAAACATTTTTAGGT+AGG + chr5.2:55312983-55313002 MS.gene010137:intron 20.0%
!!! ACTAGCTTATAAATATGATA+TGG + chr5.2:55312539-55312558 MS.gene010137:intron 20.0%
!!! AGAAAAAACATTTTTAGGTA+GGG + chr5.2:55312984-55313003 MS.gene010137:intron 20.0%
!!! CTTCTTAGATTTAAACTTTT+GGG + chr5.2:55313784-55313803 MS.gene010137:intron 20.0%
!!! GTTGAAATTTTTGAATAGTT+TGG + chr5.2:55313183-55313202 MS.gene010137:intron 20.0%
!!! GTTTTGTTTATTGGATTTAT+CGG + chr5.2:55314136-55314155 MS.gene010137:intron 20.0%
!!! TACCTAAAAATGTTTTTTCT+TGG - chr5.2:55312984-55313003 None:intergenic 20.0%
!!! TAGCTAAAAAATATGACTTT+TGG + chr5.2:55314231-55314250 MS.gene010137:intron 20.0%
!!! TATGTTGAGTTTTTGTTAAT+TGG + chr5.2:55312330-55312349 MS.gene010137:intron 20.0%
!!! TTCTTAGATTTAAACTTTTG+GGG + chr5.2:55313785-55313804 MS.gene010137:intron 20.0%
!!! TTGTTTTGATAATTTTTGTG+TGG + chr5.2:55313276-55313295 MS.gene010137:intron 20.0%
! AATAACTGATAAGCTTATAG+CGG + chr5.2:55312435-55312454 MS.gene010137:intron 25.0%
! ATAAATGGAACAAGGATATA+TGG - chr5.2:55314212-55314231 None:intergenic 25.0%
! CGATTCCAATTATAAACAAA+AGG + chr5.2:55312940-55312959 MS.gene010137:intron 25.0%
! CGTTAAAAAATTCAGCAATT+GGG - chr5.2:55313111-55313130 None:intergenic 25.0%
! CTTTAACATATTGTAAGAAG+GGG - chr5.2:55314574-55314593 None:intergenic 25.0%
! GACATAATAATTTGGTCATT+GGG + chr5.2:55312132-55312151 MS.gene010137:CDS 25.0%
! TACTGTACATTTAATCACTT+TGG + chr5.2:55314312-55314331 MS.gene010137:intron 25.0%
! TCGTTAAAAAATTCAGCAAT+TGG - chr5.2:55313112-55313131 None:intergenic 25.0%
! TGCTAGATTTAAACAAATGA+GGG - chr5.2:55312861-55312880 None:intergenic 25.0%
! TGTTTATAATTGGAATCGAT+TGG - chr5.2:55312938-55312957 None:intergenic 25.0%
! TGTTTGTGAATAATTCATCA+TGG + chr5.2:55314371-55314390 MS.gene010137:intron 25.0%
! TTGCTAGATTTAAACAAATG+AGG - chr5.2:55312862-55312881 None:intergenic 25.0%
!! AGTTTAGGCAATTTAAAACA+AGG + chr5.2:55312384-55312403 MS.gene010137:intron 25.0%
!! ATTTAATCACTTTGGTGATT+TGG + chr5.2:55314320-55314339 MS.gene010137:intron 25.0%
!! ATTTCCAAGACCAATTTTAA+AGG - chr5.2:55312909-55312928 None:intergenic 25.0%
!! GCTTCTTAGATTTAAACTTT+TGG + chr5.2:55313783-55313802 MS.gene010137:intron 25.0%
!! TCTTAGATTTAAACTTTTGG+GGG + chr5.2:55313786-55313805 MS.gene010137:intron 25.0%
!! TTTAATCACTTTGGTGATTT+GGG + chr5.2:55314321-55314340 MS.gene010137:intron 25.0%
!! TTTCCAAGACCAATTTTAAA+GGG - chr5.2:55312908-55312927 None:intergenic 25.0%
!!! AAGCTCCTTTTGTTTATAAT+TGG - chr5.2:55312948-55312967 None:intergenic 25.0%
!!! AGTAACTCTGTTTTGTTTAT+TGG + chr5.2:55314127-55314146 MS.gene010137:intron 25.0%
!!! TTTTAGCTATAAATGGAACA+AGG - chr5.2:55314220-55314239 None:intergenic 25.0%
AAGCTCAAATACGTCAAATA+TGG + chr5.2:55313596-55313615 MS.gene010137:intron 30.0%
AAGTTTAAATCTAAGAAGCC+CGG - chr5.2:55313782-55313801 None:intergenic 30.0%
ACTCATCTCAATTATTTGAC+TGG + chr5.2:55313316-55313335 MS.gene010137:intron 30.0%
CACTCTCATACTTAAATTTG+TGG + chr5.2:55314408-55314427 MS.gene010137:intron 30.0%
CGACATAATAATTTGGTCAT+TGG + chr5.2:55312131-55312150 MS.gene010137:CDS 30.0%
CGTCAAATATGGAAAAACAT+TGG + chr5.2:55313607-55313626 MS.gene010137:intron 30.0%
CTCATCTCAATTATTTGACT+GGG + chr5.2:55313317-55313336 MS.gene010137:intron 30.0%
GAGACATCGACATAATAATT+TGG + chr5.2:55312124-55312143 MS.gene010137:CDS 30.0%
GTAAGTTCTATGAGTAATTG+CGG + chr5.2:55313389-55313408 MS.gene010137:intron 30.0%
TCCATATTGTTCTATGTATC+CGG + chr5.2:55313760-55313779 MS.gene010137:intron 30.0%
! AAAAACATTGGTGTTTGACA+TGG + chr5.2:55313619-55313638 MS.gene010137:intron 30.0%
! ACAATCTAGAATCACATAAG+AGG - chr5.2:55313371-55313390 None:intergenic 30.0%
! ATTTAAAACAAGGCTCTGTT+TGG + chr5.2:55312394-55312413 MS.gene010137:intron 30.0%
! CAATCTAGAATCACATAAGA+GGG - chr5.2:55313370-55313389 None:intergenic 30.0%
! CTAATTGATTTAGCACAACT+CGG - chr5.2:55312745-55312764 None:intergenic 30.0%
!! AATTTTAAAGGGGTGATATG+AGG - chr5.2:55312897-55312916 None:intergenic 30.0%
!! ATTTTAAAGGGGTGATATGA+GGG - chr5.2:55312896-55312915 None:intergenic 30.0%
!! TCATATCACCCCTTTAAAAT+TGG + chr5.2:55312896-55312915 MS.gene010137:intron 30.0%
!! TTCCAAGACCAATTTTAAAG+GGG - chr5.2:55312907-55312926 None:intergenic 30.0%
!!! GGTCTTTTTTAAGTCAAATG+AGG + chr5.2:55312628-55312647 MS.gene010137:intron 30.0%
!!! TTATTTTAGAGAGACACAAC+AGG + chr5.2:55314466-55314485 MS.gene010137:intron 30.0%
ATTATTTGACTGGGATGAGT+TGG + chr5.2:55313326-55313345 MS.gene010137:intron 35.0%
CAACAAACACATCTTCATGA+TGG + chr5.2:55314538-55314557 MS.gene010137:CDS 35.0%
CCATATTGTTCTATGTATCC+GGG + chr5.2:55313761-55313780 MS.gene010137:intron 35.0%
CGTCAAAAACAAGTCATCTT+CGG - chr5.2:55312024-55312043 None:intergenic 35.0%
GATAAATGTCAACACAAACC+TGG - chr5.2:55314069-55314088 None:intergenic 35.0%
TGACTTAAAAAAGACCCGTT+TGG - chr5.2:55312624-55312643 None:intergenic 35.0%
TGCTCATTCAAAAGAGAGAA+AGG + chr5.2:55313961-55313980 MS.gene010137:CDS 35.0%
TTGATCCTAAATGTGCGAAA+AGG + chr5.2:55312228-55312247 MS.gene010137:CDS 35.0%
TTGTTGTGTGTTCAATCTGT+CGG + chr5.2:55312710-55312729 MS.gene010137:intron 35.0%
! ACAAACCTTTTCGCACATTT+AGG - chr5.2:55314819-55314838 None:intergenic 35.0%
! ACACATTTGTTAGCGTATCT+TGG + chr5.2:55313686-55313705 MS.gene010137:intron 35.0%
! GTTTTTGACGTACATTGACA+TGG + chr5.2:55312034-55312053 MS.gene010137:CDS 35.0%
! TTTCGCACATTTAGGATCAA+CGG - chr5.2:55312228-55312247 None:intergenic 35.0%
!! AAGTTTGTTGTGTGTGATTG+TGG + chr5.2:55313234-55313253 MS.gene010137:intron 35.0%
!! TAGATTTAAACTTTTGGGGG+TGG + chr5.2:55313789-55313808 MS.gene010137:intron 35.0%
!!! ACATTTTTAGGTAGGGAACT+AGG + chr5.2:55312991-55313010 MS.gene010137:intron 35.0%
AAACCTGGTATAGTGTCAGT+TGG - chr5.2:55314054-55314073 None:intergenic 40.0%
AACCTGGTATAGTGTCAGTT+GGG - chr5.2:55314053-55314072 None:intergenic 40.0%
AGAACGTCACAGTTACCAAA+CGG + chr5.2:55312606-55312625 MS.gene010137:intron 40.0%
AGCCAGATACACGACAAAAT+AGG - chr5.2:55313064-55313083 None:intergenic 40.0%
AGCTATGTCTCCTGATAAGT+TGG + chr5.2:55312190-55312209 MS.gene010137:CDS 40.0%
AGTTGTAGCATCAGTCTGTA+GGG - chr5.2:55314023-55314042 None:intergenic 40.0%
CCAGATACACGACAAAATAG+GGG - chr5.2:55313062-55313081 None:intergenic 40.0%
CCCGGATACATAGAACAATA+TGG - chr5.2:55313764-55313783 None:intergenic 40.0%
CTAGAATCACATAAGAGGGT+TGG - chr5.2:55313366-55313385 None:intergenic 40.0%
GAACAAGGATATATGGCTCA+AGG - chr5.2:55314205-55314224 None:intergenic 40.0%
GAGACATCGGCACAATAATT+TGG + chr5.2:55314707-55314726 MS.gene010137:CDS 40.0%
GCCAGATACACGACAAAATA+GGG - chr5.2:55313063-55313082 None:intergenic 40.0%
GGCAACTAGTTCAAGATGAA+GGG - chr5.2:55313041-55313060 None:intergenic 40.0%
GGCACAATAATTTGGTCGTT+GGG + chr5.2:55314715-55314734 MS.gene010137:CDS 40.0%
GTATCTGGCTATGTGTTCAA+TGG + chr5.2:55313074-55313093 MS.gene010137:intron 40.0%
GTTTACTCACACTGCAGAAA+CGG - chr5.2:55312832-55312851 None:intergenic 40.0%
TACATTGACATGGACAGACT+TGG + chr5.2:55312044-55312063 MS.gene010137:CDS 40.0%
TGTTTGGGGAGACTATAGAT+GGG + chr5.2:55312162-55312181 MS.gene010137:CDS 40.0%
TTGTTTGGGGAGACTATAGA+TGG + chr5.2:55312161-55312180 MS.gene010137:CDS 40.0%
! AACTCCACTAACAGCCATTT+TGG + chr5.2:55312801-55312820 MS.gene010137:intron 40.0%
! ACGAACCTTTTCGCACATTT+AGG - chr5.2:55312236-55312255 None:intergenic 40.0%
! TCATTGGGTCGAGTTTGTTT+GGG + chr5.2:55312147-55312166 MS.gene010137:CDS 40.0%
! TTCGCACATTTAGGATCAAC+AGG - chr5.2:55312227-55312246 None:intergenic 40.0%
!! ATTTAAACTTTTGGGGGTGG+AGG + chr5.2:55313792-55313811 MS.gene010137:intron 40.0%
!! CACCCCTTTAAAATTGGTCT+TGG + chr5.2:55312902-55312921 MS.gene010137:intron 40.0%
AGCTATGCCTCCTGATAAGT+TGG + chr5.2:55314773-55314792 MS.gene010137:CDS 45.0%
CAAAGCTCAGCCAACTTATC+AGG - chr5.2:55312203-55312222 None:intergenic 45.0%
CGGCACAATAATTTGGTCGT+TGG + chr5.2:55314714-55314733 MS.gene010137:CDS 45.0%
GAACGTCACAGTTACCAAAC+GGG + chr5.2:55312607-55312626 MS.gene010137:intron 45.0%
GAGTTGTAGCATCAGTCTGT+AGG - chr5.2:55314024-55314043 None:intergenic 45.0%
GGGCAACTAGTTCAAGATGA+AGG - chr5.2:55313042-55313061 None:intergenic 45.0%
GTGGAGGATAAAGTGAGAGA+GGG + chr5.2:55313808-55313827 MS.gene010137:intron 45.0%
TGGAGGATAAAGTGAGAGAG+GGG + chr5.2:55313809-55313828 MS.gene010137:intron 45.0%
TTTAGCACAACTCGGAGAGA+AGG - chr5.2:55312737-55312756 None:intergenic 45.0%
! CATTGGGTCGAGTTTGTTTG+GGG + chr5.2:55312148-55312167 MS.gene010137:CDS 45.0%
! CCCCTATTTTGTCGTGTATC+TGG + chr5.2:55313059-55313078 MS.gene010137:intron 45.0%
! CTGATAAGTTGGCTGAGCTT+TGG + chr5.2:55312201-55312220 MS.gene010137:CDS 45.0%
! GTCATTGGGTCGAGTTTGTT+TGG + chr5.2:55312146-55312165 MS.gene010137:CDS 45.0%
! GTTTGTTGCTCCATTGCTTG+CGG - chr5.2:55314526-55314545 None:intergenic 45.0%
!! TCGTTGGGTTGAGTTCGTTT+GGG + chr5.2:55314730-55314749 MS.gene010137:CDS 45.0%
AGCTCAGCCAACTTATCAGG+AGG - chr5.2:55312200-55312219 None:intergenic 50.0%
ATCCGGTGAGGTTGAGACAT+CGG + chr5.2:55314694-55314713 MS.gene010137:CDS 50.0%
ATGGACAGACTTGGAGATGC+TGG + chr5.2:55312053-55312072 MS.gene010137:CDS 50.0%
CAGAAACGGAGTGGCCAAAA+TGG - chr5.2:55312818-55312837 None:intergenic 50.0%
CGAAGAGGCAGAGAAGAATC+CGG + chr5.2:55314677-55314696 MS.gene010137:CDS 50.0%
CGTTTGGGGAGACTATGGAT+GGG + chr5.2:55314745-55314764 MS.gene010137:CDS 50.0%
GAGTTCGTTTGGGGAGACTA+TGG + chr5.2:55314740-55314759 MS.gene010137:CDS 50.0%
GGTGGAGGATAAAGTGAGAG+AGG + chr5.2:55313807-55313826 MS.gene010137:intron 50.0%
GTGGCCAAAATGGCTGTTAG+TGG - chr5.2:55312808-55312827 None:intergenic 50.0%
TCGTTTGGGGAGACTATGGA+TGG + chr5.2:55314744-55314763 MS.gene010137:CDS 50.0%
TGATCTGCCGGTGAATGGAT+CGG - chr5.2:55311973-55311992 None:intergenic 50.0%
TGCCCAACTGACACTATACC+AGG + chr5.2:55314048-55314067 MS.gene010137:CDS 50.0%
! ACTGCTAGCCTCGATGAGAT+CGG + chr5.2:55311996-55312015 MS.gene010137:CDS 50.0%
!! CGTTGGGTTGAGTTCGTTTG+GGG + chr5.2:55314731-55314750 MS.gene010137:CDS 50.0%
!! GCTAGCAGTTGATGATCTGC+CGG - chr5.2:55311985-55312004 None:intergenic 50.0%
!! GTCGTTGGGTTGAGTTCGTT+TGG + chr5.2:55314729-55314748 MS.gene010137:CDS 50.0%
!! GTTGATGATCTGCCGGTGAA+TGG - chr5.2:55311978-55311997 None:intergenic 50.0%
AGATCCGGGAGGAAACGAAG+GGG + chr5.2:55312079-55312098 MS.gene010137:CDS 55.0%
AGGCAGAGAAGAATCCGGTG+AGG + chr5.2:55314682-55314701 MS.gene010137:CDS 55.0%
CAGATCCGGGAGGAAACGAA+GGG + chr5.2:55312078-55312097 MS.gene010137:CDS 55.0%
CGAAGGGGCAGAGAAGAATC+AGG + chr5.2:55312094-55312113 MS.gene010137:CDS 55.0%
CTCACACTGCAGAAACGGAG+TGG - chr5.2:55312827-55312846 None:intergenic 55.0%
CTTCGGATCCGATCTCATCG+AGG - chr5.2:55312007-55312026 None:intergenic 55.0%
GGGCAGAGAAGAATCAGGTG+AGG + chr5.2:55312099-55312118 MS.gene010137:CDS 55.0%
GTTGCTCCATTGCTTGCGGA+CGG - chr5.2:55314522-55314541 None:intergenic 55.0%
TAAGCTCCGTCCGCAAGCAA+TGG + chr5.2:55314513-55314532 MS.gene010137:CDS 55.0%
TGCCGATGTCTCAACCTCAC+CGG - chr5.2:55314699-55314718 None:intergenic 55.0%
TGGAGATGCTGGAGCAGATC+CGG + chr5.2:55312064-55312083 MS.gene010137:CDS 55.0%
AGATCCGGGAGGAAGCGAAG+AGG + chr5.2:55314662-55314681 MS.gene010137:CDS 60.0%
CTGCCGGTGAATGGATCGGA+CGG - chr5.2:55311969-55311988 None:intergenic 60.0%
GCAGATCCGGGAGGAAACGA+AGG + chr5.2:55312077-55312096 MS.gene010137:CDS 60.0%
GGAGATGCTGGAGCAGATCC+GGG + chr5.2:55312065-55312084 MS.gene010137:CDS 60.0%
TCCCCGTCCGATCCATTCAC+CGG + chr5.2:55311963-55311982 MS.gene010137:CDS 60.0%
TCTGCCCCTTCGTTTCCTCC+CGG - chr5.2:55312086-55312105 None:intergenic 60.0%
TCTGCCTCTTCGCTTCCTCC+CGG - chr5.2:55314669-55314688 None:intergenic 60.0%
TGAATGGATCGGACGGGGAG+AGG - chr5.2:55311962-55311981 None:intergenic 60.0%
TGCCGGTGAATGGATCGGAC+GGG - chr5.2:55311968-55311987 None:intergenic 60.0%
GATGCTGGAGCAGATCCGGG+AGG + chr5.2:55312068-55312087 MS.gene010137:CDS 65.0%
GCCGGTGAATGGATCGGACG+GGG - chr5.2:55311967-55311986 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 55311954 55314854 55311954 ID=MS.gene010137
chr5.2 mRNA 55311954 55314854 55311954 ID=MS.gene010137.t1;Parent=MS.gene010137
chr5.2 exon 55311954 55312249 55311954 ID=MS.gene010137.t1.exon1;Parent=MS.gene010137.t1
chr5.2 CDS 55311954 55312249 55311954 ID=cds.MS.gene010137.t1;Parent=MS.gene010137.t1
chr5.2 exon 55313937 55314069 55313937 ID=MS.gene010137.t1.exon2;Parent=MS.gene010137.t1
chr5.2 CDS 55313937 55314069 55313937 ID=cds.MS.gene010137.t1;Parent=MS.gene010137.t1
chr5.2 exon 55314475 55314559 55314475 ID=MS.gene010137.t1.exon3;Parent=MS.gene010137.t1
chr5.2 CDS 55314475 55314559 55314475 ID=cds.MS.gene010137.t1;Parent=MS.gene010137.t1
chr5.2 exon 55314610 55314854 55314610 ID=MS.gene010137.t1.exon4;Parent=MS.gene010137.t1
chr5.2 CDS 55314610 55314854 55314610 ID=cds.MS.gene010137.t1;Parent=MS.gene010137.t1
Gene Sequence

>MS.gene010137

ATGGACCTCTCCCCGTCCGATCCATTCACCGGCAGATCATCAACTGCTAGCCTCGATGAGATCGGATCCGAAGATGACTTGTTTTTGACGTACATTGACATGGACAGACTTGGAGATGCTGGAGCAGATCCGGGAGGAAACGAAGGGGCAGAGAAGAATCAGGTGAGGTCGAGACATCGACATAATAATTTGGTCATTGGGTCGAGTTTGTTTGGGGAGACTATAGATGGGAAGAAAGCTATGTCTCCTGATAAGTTGGCTGAGCTTTGGCCTGTTGATCCTAAATGTGCGAAAAGGTTCGTAATTTTGATCGAATGATTTTTTTCTACTTCAATTGTGTGTAGATTAGTTAATTTTTCAATGATGGGTGTTTTTCTATGTTGAGTTTTTGTTAATTGGTTTTGAAGTTCTAAATTGATTTTCTTTTATTAGTTTAGGCAATTTAAAACAAGGCTCTGTTTGGTAAAATAAATTAATAAGGAATAACTGATAAGCTTATAGCGGATAACTAATAAACTAGTTTATAGCTGATAGCAGATAAGTTAGCTGATTGAATTCGTAGTGTTTAGTAAAATTAACAGTTGAACTAGCTTATAAATATGATATGGCATAAACATGATATTTTTAATAGCGATTAAGCTATAAGCTCGTGAGAACGTCACAGTTACCAAACGGGTCTTTTTTAAGTCAAATGAGGTTATAAGACACAAGCAATAAGCTCAAAATTATTTTTTATCAAATAAAGCGAATTGACTTTTGTTGTGTGTTCAATCTGTCGGACCTTCTCTCCGAGTTGTGCTAAATCAATTAGATGTTGATTGACTAGTTTCTTTCTAATGTGTAATTCAACTCCACTAACAGCCATTTTGGCCACTCCGTTTCTGCAGTGTGAGTAAACACTTAACCCTCATTTGTTTAAATCTAGCAAGATAATAGTGACCCTCATATCACCCCTTTAAAATTGGTCTTGGAAATTTCTTTCCAATCGATTCCAATTATAAACAAAAGGAGCTTTGAACATTGTAAACCAAGAAAAAACATTTTTAGGTAGGGAACTAGGATACAGTTTCATTTTCATTTTCAACCCTTCATCTTGAACTAGTTGCCCCTATTTTGTCGTGTATCTGGCTATGTGTTCAATGGTTGATACTTTTCCCAATTGCTGAATTTTTTAACGATGAGTGTGTTTTTCTGTTTTGAGTTTTTGTTGATTGATTTTGAAGTTCTAAGTTGAAATTTTTGAATAGTTTGGGAAATTTAAAATAAATAAATTGAAATTCAAGTTTGTTGTGTGTGATTGTGGTTTGAAATTTTCAGTTTAGTTGTTTTGATAATTTTTGTGTGGATTATGTTTGTTTGAATACTCATCTCAATTATTTGACTGGGATGAGTTGGTTGTTGTGTGAAAGCCAACCCTCTTATGTGATTCTAGATTGTAAGTTCTATGAGTAATTGCGGCATTGTTGAAATTGTATGTTTTTTTTTTTTTAATTTTTTTTTATATAGTGATGAGGAGATTTGAAATTGTAATGATGTGTCAATTCATTAACTTGTAATTTATGATTAGAGATTAGAGGCCATTAAGAATCTTTTTGTATAAGCGCAAATCATTTGAATTTTGTGATATCAACATATAATTATGAAGCTCAAATACGTCAAATATGGAAAAACATTGGTGTTTGACATGGATACAAGATTGATACATTTCTGATACTTGCTAATAAATACACAAACACATTTGTTAGCGTATCTTGGTCGTGTCGTATTTAATTTTTAAAAAAATTGTAGTATCTGTGTCATATCATATCCATATTGTTCTATGTATCCGGGCTTCTTAGATTTAAACTTTTGGGGGTGGAGGATAAAGTGAGAGAGGGGTTTATGCAAGCATACTGCTCTCATGTTTTAATCTAATTTTCAATTGTACTAATCGTTGTGCATTTGTTTTATTCATTCTTCTCATTTTTCTGTTGTTATGAATAGAATACTTGCTAATCGACAATCTGCTGCTCATTCAAAAGAGAGAAAGGCGCATTATATACATGAACTAGAACGCAAAGTTCAGACCCTACAGACTGATGCTACAACTCTTTCTGCCCAACTGACACTATACCAGGTTTGTGTTGACATTTATCTACTACAATGACAGCACTTTAAAAGTTCGATATTACAGAGTAACTCTGTTTTGTTTATTGGATTTATCGGTGTAGCTTAGTGCAATAAATTCAACTGTCTTGTTCATCATTTTCCTTGAGCCATATATCCTTGTTCCATTTATAGCTAAAAAATATGACTTTTGGAAGCATTCTATTTGTATTTCTCTCAGAAATTCCTTTTATATAAAATGTTCTAGATATTTACTGTACATTTAATCACTTTGGTGATTTGGGTTTTAGTGTTATTACATAATGTTGCTTTGTTTGTGAATAATTCATCATGGTTGTTTTCAGTTTTCACTCTCATACTTAAATTTGTGGCTAAATTGACTCAATCGCTTCTTGATTATTTTTGTTTATTTTAGAGAGACACAACAGGTCTGAATACTGAAAATACAGAGCTTAAGCTCCGTCCGCAAGCAATGGAGCAACAAACACATCTTCATGATGGTAACAATTATCCCCTTCTTACAATATGTTAAAGATGTTCTGATCCGAAGATGACTTGTTTTTGACGTACATTGACATGGACAGACTTGGAGATGCTGGAGCAGATCCGGGAGGAAGCGAAGAGGCAGAGAAGAATCCGGTGAGGTTGAGACATCGGCACAATAATTTGGTCGTTGGGTTGAGTTCGTTTGGGGAGACTATGGATGGGAAGAAAGCTATGCCTCCTGATAAGTTGGCTGAGCTTTGGTCCGTTGATCCTAAATGTGCGAAAAGGTTTGTAATTTTGATCGAATGA
Protein sequence

>MS.gene010137.t1

MDLSPSDPFTGRSSTASLDEIGSEDDLFLTYIDMDRLGDAGADPGGNEGAEKNQVRSRHRHNNLVIGSSLFGETIDGKKAMSPDKLAELWPVDPKCAKRILANRQSAAHSKERKAHYIHELERKVQTLQTDATTLSAQLTLYQRDTTGLNTENTELKLRPQAMEQQTHLHDDDLFLTYIDMDRLGDAGADPGGSEEAEKNPVRLRHRHNNLVVGLSSFGETMDGKKAMPPDKLAELWSVDPKCAKRFVILIE