Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010139.t1 | PNX96635.1 | 82.6 | 144 | 24 | 1 | 1 | 143 | 73 | 216 | 1.50E-54 | 222.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010139.t1 | O22873 | 58.2 | 158 | 43 | 4 | 2 | 143 | 48 | 198 | 6.0e-36 | 151.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010139.t1 | A0A2K3N0P6 | 82.6 | 144 | 24 | 1 | 1 | 143 | 73 | 216 | 1.1e-54 | 222.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene010139.t1 | TF | bZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010139.t1 | MTR_5g075390 | 86.014 | 143 | 20 | 0 | 1 | 143 | 67 | 209 | 4.31e-83 | 248 |
| MS.gene010139.t1 | MTR_3g467120 | 60.227 | 176 | 35 | 4 | 1 | 143 | 54 | 227 | 1.32e-58 | 186 |
| MS.gene010139.t1 | MTR_3g094020 | 58.824 | 119 | 42 | 1 | 25 | 143 | 47 | 158 | 6.89e-37 | 128 |
| MS.gene010139.t1 | MTR_6g034945 | 61.386 | 101 | 36 | 3 | 45 | 143 | 102 | 201 | 1.11e-27 | 104 |
| MS.gene010139.t1 | MTR_2g099050 | 44.242 | 165 | 48 | 4 | 23 | 143 | 107 | 271 | 1.64e-27 | 105 |
| MS.gene010139.t1 | MTR_4g072090 | 75.758 | 66 | 16 | 0 | 78 | 143 | 345 | 410 | 1.38e-23 | 95.1 |
| MS.gene010139.t1 | MTR_4g072090 | 75.758 | 66 | 16 | 0 | 78 | 143 | 345 | 410 | 1.57e-23 | 95.1 |
| MS.gene010139.t1 | MTR_1g023690 | 72.917 | 48 | 13 | 0 | 78 | 125 | 372 | 419 | 1.22e-13 | 67.0 |
| MS.gene010139.t1 | MTR_1g099030 | 50.000 | 64 | 32 | 0 | 78 | 141 | 109 | 172 | 3.29e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010139.t1 | AT2G40620 | 57.595 | 158 | 44 | 4 | 2 | 143 | 48 | 198 | 8.23e-47 | 155 |
| MS.gene010139.t1 | AT1G06850 | 52.308 | 130 | 47 | 3 | 28 | 143 | 70 | 198 | 4.13e-36 | 124 |
| MS.gene010139.t1 | AT1G06850 | 52.308 | 130 | 47 | 3 | 28 | 143 | 70 | 198 | 6.11e-35 | 124 |
| MS.gene010139.t1 | AT2G31370 | 46.835 | 158 | 47 | 5 | 23 | 143 | 94 | 251 | 1.62e-29 | 110 |
| MS.gene010139.t1 | AT2G31370 | 46.835 | 158 | 47 | 5 | 23 | 143 | 94 | 251 | 2.46e-29 | 110 |
| MS.gene010139.t1 | AT2G31370 | 46.835 | 158 | 47 | 5 | 23 | 143 | 94 | 251 | 2.46e-29 | 110 |
| MS.gene010139.t1 | AT2G31370 | 46.835 | 158 | 47 | 5 | 23 | 143 | 94 | 251 | 2.46e-29 | 110 |
| MS.gene010139.t1 | AT2G31370 | 46.835 | 158 | 47 | 5 | 23 | 143 | 94 | 251 | 2.46e-29 | 110 |
| MS.gene010139.t1 | AT2G31370 | 46.835 | 158 | 47 | 5 | 23 | 143 | 94 | 251 | 2.46e-29 | 110 |
| MS.gene010139.t1 | AT2G31370 | 46.835 | 158 | 47 | 5 | 23 | 143 | 94 | 251 | 2.46e-29 | 110 |
| MS.gene010139.t1 | AT1G06070 | 43.137 | 153 | 55 | 3 | 23 | 143 | 108 | 260 | 8.56e-27 | 103 |
| MS.gene010139.t1 | AT4G38900 | 75.758 | 66 | 16 | 0 | 78 | 143 | 379 | 444 | 2.29e-23 | 95.1 |
| MS.gene010139.t1 | AT4G38900 | 75.758 | 66 | 16 | 0 | 78 | 143 | 379 | 444 | 2.29e-23 | 95.1 |
| MS.gene010139.t1 | AT1G43700 | 71.014 | 69 | 18 | 1 | 77 | 143 | 176 | 244 | 9.34e-23 | 92.0 |
| MS.gene010139.t1 | AT4G38900 | 69.444 | 72 | 16 | 1 | 78 | 143 | 379 | 450 | 4.98e-21 | 88.2 |
| MS.gene010139.t1 | AT2G21230 | 68.182 | 66 | 21 | 0 | 78 | 143 | 355 | 420 | 1.35e-19 | 84.0 |
| MS.gene010139.t1 | AT2G21230 | 68.182 | 66 | 21 | 0 | 78 | 143 | 355 | 420 | 1.81e-19 | 84.0 |
| MS.gene010139.t1 | AT2G21230 | 68.182 | 66 | 21 | 0 | 78 | 143 | 355 | 420 | 2.06e-19 | 83.6 |
| MS.gene010139.t1 | AT2G21230 | 68.182 | 66 | 21 | 0 | 78 | 143 | 355 | 420 | 2.06e-19 | 83.6 |
Find 40 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCATTGGGTCGAGTTTGTT+TGG | 0.270016 | 5.4:+50918053 | MS.gene010139:CDS |
| TTGTTTGGGGAGACTATAGA+TGG | 0.281473 | 5.4:+50918068 | MS.gene010139:CDS |
| CGACATAATAATTTGGTCAT+TGG | 0.303981 | 5.4:+50918038 | MS.gene010139:CDS |
| GAGACATCGACATAATAATT+TGG | 0.326453 | 5.4:+50918031 | MS.gene010139:CDS |
| CAAAGCTCAGCCAACTTATC+AGG | 0.329404 | 5.4:-50918107 | None:intergenic |
| TCATTGGGTCGAGTTTGTTT+GGG | 0.335881 | 5.4:+50918054 | MS.gene010139:CDS |
| TGGAGATGCTGGAGCAGATC+CGG | 0.379190 | 5.4:+50917971 | MS.gene010139:CDS |
| CTGATAAGTTGGCTGAGCTT+TGG | 0.398977 | 5.4:+50918108 | MS.gene010139:CDS |
| TTCGCACATTTAGGATCAAC+AGG | 0.413831 | 5.4:-50918131 | None:intergenic |
| GACATAATAATTTGGTCATT+GGG | 0.421535 | 5.4:+50918039 | MS.gene010139:CDS |
| CGAAGGGGCAGAGAAGAATC+AGG | 0.454515 | 5.4:+50918001 | MS.gene010139:CDS |
| TGAATGGATCGGACGGGGAG+AGG | 0.474920 | 5.4:-50917866 | None:intergenic |
| TCTGCCCCTTCGTTTCCTCC+CGG | 0.478769 | 5.4:-50917990 | None:intergenic |
| AGCTATGTCTCCTGATAAGT+TGG | 0.488757 | 5.4:+50918097 | MS.gene010139:CDS |
| ATGGACAGACTTGGAGATGC+TGG | 0.503770 | 5.4:+50917960 | MS.gene010139:CDS |
| TGCCCAACTGACACTATACC+AGG | 0.512274 | 5.4:+50919953 | MS.gene010139:CDS |
| GTTGATGATCTGCCGGTGAA+TGG | 0.513134 | 5.4:-50917882 | None:intergenic |
| TGCTCATTCAAAAGAGAGAA+AGG | 0.514267 | 5.4:+50919866 | MS.gene010139:CDS |
| TACATTGACATGGACAGACT+TGG | 0.516336 | 5.4:+50917951 | MS.gene010139:CDS |
| GCAGATCCGGGAGGAAACGA+AGG | 0.527514 | 5.4:+50917984 | MS.gene010139:CDS |
| CAGATCCGGGAGGAAACGAA+GGG | 0.534632 | 5.4:+50917985 | MS.gene010139:CDS |
| TTGATCCTAAATGTGCGAAA+AGG | 0.537313 | 5.4:+50918135 | MS.gene010139:CDS |
| GGAGATGCTGGAGCAGATCC+GGG | 0.539976 | 5.4:+50917972 | MS.gene010139:CDS |
| TGCCGGTGAATGGATCGGAC+GGG | 0.541814 | 5.4:-50917872 | None:intergenic |
| AACCTGGTATAGTGTCAGTT+GGG | 0.543208 | 5.4:-50919955 | None:intergenic |
| TCCCCGTCCGATCCATTCAC+CGG | 0.545509 | 5.4:+50917870 | MS.gene010139:CDS |
| GCCGGTGAATGGATCGGACG+GGG | 0.546664 | 5.4:-50917871 | None:intergenic |
| TGTTTGGGGAGACTATAGAT+GGG | 0.548419 | 5.4:+50918069 | MS.gene010139:CDS |
| GAGTTGTAGCATCAGTCTGT+AGG | 0.551575 | 5.4:-50919926 | None:intergenic |
| CTGCCGGTGAATGGATCGGA+CGG | 0.557304 | 5.4:-50917873 | None:intergenic |
| AAACCTGGTATAGTGTCAGT+TGG | 0.558403 | 5.4:-50919956 | None:intergenic |
| AGTTGTAGCATCAGTCTGTA+GGG | 0.565606 | 5.4:-50919925 | None:intergenic |
| GCTAGCAGTTGATGATCTGC+CGG | 0.567306 | 5.4:-50917889 | None:intergenic |
| ACTGCTAGCCTCGATGAGAT+CGG | 0.580821 | 5.4:+50917903 | MS.gene010139:CDS |
| CATTGGGTCGAGTTTGTTTG+GGG | 0.585199 | 5.4:+50918055 | MS.gene010139:CDS |
| TGATCTGCCGGTGAATGGAT+CGG | 0.590158 | 5.4:-50917877 | None:intergenic |
| GGGCAGAGAAGAATCAGGTG+AGG | 0.681356 | 5.4:+50918006 | MS.gene010139:CDS |
| CTTCGGATCCGATCTCATCG+AGG | 0.697774 | 5.4:-50917911 | None:intergenic |
| GATGCTGGAGCAGATCCGGG+AGG | 0.709228 | 5.4:+50917975 | MS.gene010139:CDS |
| AGATCCGGGAGGAAACGAAG+GGG | 0.720038 | 5.4:+50917986 | MS.gene010139:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGGTAAAATAAATTAATA+AGG | + | chr5.4:50918319-50918338 | MS.gene010139:intron | 10.0% |
| !! | TTATACAAAAAGATTCTTAA+TGG | - | chr5.4:50919440-50919459 | None:intergenic | 15.0% |
| !!! | ATTAGTTAATTTTTCAATGA+TGG | + | chr5.4:50918205-50918224 | MS.gene010139:intron | 15.0% |
| !!! | TGATTTTCTTTTATTAGTTT+AGG | + | chr5.4:50918276-50918295 | MS.gene010139:intron | 15.0% |
| !!! | TTAGTTAATTTTTCAATGAT+GGG | + | chr5.4:50918206-50918225 | MS.gene010139:intron | 15.0% |
| !!! | TTGAAATTTTTGAATAGTTT+GGG | + | chr5.4:50919091-50919110 | MS.gene010139:intron | 15.0% |
| !!! | TTTTTTTTTATATAGTGATG+AGG | + | chr5.4:50919351-50919370 | MS.gene010139:intron | 15.0% |
| !! | AATTTATGATTAGAGATTAG+AGG | + | chr5.4:50919414-50919433 | MS.gene010139:intron | 20.0% |
| !!! | AACCAAGAAAAAACATTTTT+AGG | + | chr5.4:50918886-50918905 | MS.gene010139:intron | 20.0% |
| !!! | AAGAAAAAACATTTTTAGGT+AGG | + | chr5.4:50918890-50918909 | MS.gene010139:intron | 20.0% |
| !!! | ACTAGCTTATAAATATGATA+TGG | + | chr5.4:50918446-50918465 | MS.gene010139:intron | 20.0% |
| !!! | AGAAAAAACATTTTTAGGTA+GGG | + | chr5.4:50918891-50918910 | MS.gene010139:intron | 20.0% |
| !!! | CTTCTTAGATTTAAACTTTT+GGG | + | chr5.4:50919690-50919709 | MS.gene010139:intron | 20.0% |
| !!! | GTTGAAATTTTTGAATAGTT+TGG | + | chr5.4:50919090-50919109 | MS.gene010139:intron | 20.0% |
| !!! | TACCTAAAAATGTTTTTTCT+TGG | - | chr5.4:50918891-50918910 | None:intergenic | 20.0% |
| !!! | TATGTTGAGTTTTTGTTAAT+TGG | + | chr5.4:50918237-50918256 | MS.gene010139:intron | 20.0% |
| !!! | TTCTTAGATTTAAACTTTTG+GGG | + | chr5.4:50919691-50919710 | MS.gene010139:intron | 20.0% |
| !!! | TTGTTTTGATAATTTTTGTG+TGG | + | chr5.4:50919182-50919201 | MS.gene010139:intron | 20.0% |
| ! | AATAACTGATAAGCTTATAG+CGG | + | chr5.4:50918342-50918361 | MS.gene010139:intron | 25.0% |
| ! | CGATTCCAATTATAAACAAA+AGG | + | chr5.4:50918847-50918866 | MS.gene010139:intron | 25.0% |
| ! | CGTTAAAAAATTCAGCAATT+GGG | - | chr5.4:50919018-50919037 | None:intergenic | 25.0% |
| ! | GACATAATAATTTGGTCATT+GGG | + | chr5.4:50918039-50918058 | MS.gene010139:CDS | 25.0% |
| ! | TCGTTAAAAAATTCAGCAAT+TGG | - | chr5.4:50919019-50919038 | None:intergenic | 25.0% |
| ! | TGCTAGATTTAAACAAATGA+GGG | - | chr5.4:50918768-50918787 | None:intergenic | 25.0% |
| ! | TGTTTATAATTGGAATCGAT+TGG | - | chr5.4:50918845-50918864 | None:intergenic | 25.0% |
| ! | TTGCTAGATTTAAACAAATG+AGG | - | chr5.4:50918769-50918788 | None:intergenic | 25.0% |
| !! | AGTTTAGGCAATTTAAAACA+AGG | + | chr5.4:50918291-50918310 | MS.gene010139:intron | 25.0% |
| !! | ATTTCCAAGACCAATTTTAA+AGG | - | chr5.4:50918816-50918835 | None:intergenic | 25.0% |
| !! | GCTTCTTAGATTTAAACTTT+TGG | + | chr5.4:50919689-50919708 | MS.gene010139:intron | 25.0% |
| !! | TCTTAGATTTAAACTTTTGG+GGG | + | chr5.4:50919692-50919711 | MS.gene010139:intron | 25.0% |
| !! | TTTCCAAGACCAATTTTAAA+GGG | - | chr5.4:50918815-50918834 | None:intergenic | 25.0% |
| !!! | AAGCTCCTTTTGTTTATAAT+TGG | - | chr5.4:50918855-50918874 | None:intergenic | 25.0% |
| AAGCTCAAATACGTCAAATA+TGG | + | chr5.4:50919502-50919521 | MS.gene010139:intron | 30.0% | |
| AAGTTTAAATCTAAGAAGCC+CGG | - | chr5.4:50919688-50919707 | None:intergenic | 30.0% | |
| ACTCATCTCAATTATTTGAC+TGG | + | chr5.4:50919222-50919241 | MS.gene010139:intron | 30.0% | |
| CGACATAATAATTTGGTCAT+TGG | + | chr5.4:50918038-50918057 | MS.gene010139:CDS | 30.0% | |
| CGTCAAATATGGAAAAACAT+TGG | + | chr5.4:50919513-50919532 | MS.gene010139:intron | 30.0% | |
| CTCATCTCAATTATTTGACT+GGG | + | chr5.4:50919223-50919242 | MS.gene010139:intron | 30.0% | |
| GAGACATCGACATAATAATT+TGG | + | chr5.4:50918031-50918050 | MS.gene010139:CDS | 30.0% | |
| GTAAGTTCTATGAGTAATTG+CGG | + | chr5.4:50919295-50919314 | MS.gene010139:intron | 30.0% | |
| TCCATATTGTTCTATGTATC+CGG | + | chr5.4:50919666-50919685 | MS.gene010139:intron | 30.0% | |
| ! | AAAAACATTGGTGTTTGACA+TGG | + | chr5.4:50919525-50919544 | MS.gene010139:intron | 30.0% |
| ! | ACAATCTAGAATCACATAAG+AGG | - | chr5.4:50919277-50919296 | None:intergenic | 30.0% |
| ! | ATTTAAAACAAGGCTCTGTT+TGG | + | chr5.4:50918301-50918320 | MS.gene010139:intron | 30.0% |
| ! | CAATCTAGAATCACATAAGA+GGG | - | chr5.4:50919276-50919295 | None:intergenic | 30.0% |
| ! | CTAATTGATTTAGCACAACT+CGG | - | chr5.4:50918652-50918671 | None:intergenic | 30.0% |
| !! | AATTTTAAAGGGGTGATATG+AGG | - | chr5.4:50918804-50918823 | None:intergenic | 30.0% |
| !! | ATTTTAAAGGGGTGATATGA+GGG | - | chr5.4:50918803-50918822 | None:intergenic | 30.0% |
| !! | TCATATCACCCCTTTAAAAT+TGG | + | chr5.4:50918803-50918822 | MS.gene010139:intron | 30.0% |
| !! | TTCCAAGACCAATTTTAAAG+GGG | - | chr5.4:50918814-50918833 | None:intergenic | 30.0% |
| !!! | GGTCTTTTTTAAGTCAAATG+AGG | + | chr5.4:50918535-50918554 | MS.gene010139:intron | 30.0% |
| ATTATTTGACTGGGATGAGT+TGG | + | chr5.4:50919232-50919251 | MS.gene010139:intron | 35.0% | |
| CCATATTGTTCTATGTATCC+GGG | + | chr5.4:50919667-50919686 | MS.gene010139:intron | 35.0% | |
| CGTCAAAAACAAGTCATCTT+CGG | - | chr5.4:50917931-50917950 | None:intergenic | 35.0% | |
| TGACTTAAAAAAGACCCGTT+TGG | - | chr5.4:50918531-50918550 | None:intergenic | 35.0% | |
| TGCTCATTCAAAAGAGAGAA+AGG | + | chr5.4:50919866-50919885 | MS.gene010139:CDS | 35.0% | |
| TTGATCCTAAATGTGCGAAA+AGG | + | chr5.4:50918135-50918154 | MS.gene010139:CDS | 35.0% | |
| TTGTTGTGTGTTCAATCTGT+CGG | + | chr5.4:50918617-50918636 | MS.gene010139:intron | 35.0% | |
| ! | ACACATTTGTTAGCGTATCT+TGG | + | chr5.4:50919592-50919611 | MS.gene010139:intron | 35.0% |
| ! | GTTTTTGACGTACATTGACA+TGG | + | chr5.4:50917941-50917960 | MS.gene010139:CDS | 35.0% |
| !! | AAGTTTGTTGTGTGTGATTG+TGG | + | chr5.4:50919140-50919159 | MS.gene010139:intron | 35.0% |
| !! | TAGATTTAAACTTTTGGGGG+TGG | + | chr5.4:50919695-50919714 | MS.gene010139:intron | 35.0% |
| !!! | ACATTTTTAGGTAGGGAACT+AGG | + | chr5.4:50918898-50918917 | MS.gene010139:intron | 35.0% |
| AGAACGTCACAGTTACCAAA+CGG | + | chr5.4:50918513-50918532 | MS.gene010139:intron | 40.0% | |
| AGCCAGATACACGACAAAAT+AGG | - | chr5.4:50918971-50918990 | None:intergenic | 40.0% | |
| AGCTATGTCTCCTGATAAGT+TGG | + | chr5.4:50918097-50918116 | MS.gene010139:CDS | 40.0% | |
| AGTTGTAGCATCAGTCTGTA+GGG | - | chr5.4:50919928-50919947 | None:intergenic | 40.0% | |
| CCAGATACACGACAAAATAG+GGG | - | chr5.4:50918969-50918988 | None:intergenic | 40.0% | |
| CCCGGATACATAGAACAATA+TGG | - | chr5.4:50919670-50919689 | None:intergenic | 40.0% | |
| CTAGAATCACATAAGAGGGT+TGG | - | chr5.4:50919272-50919291 | None:intergenic | 40.0% | |
| GCCAGATACACGACAAAATA+GGG | - | chr5.4:50918970-50918989 | None:intergenic | 40.0% | |
| GGCAACTAGTTCAAGATGAA+GGG | - | chr5.4:50918948-50918967 | None:intergenic | 40.0% | |
| GTATCTGGCTATGTGTTCAA+TGG | + | chr5.4:50918981-50919000 | MS.gene010139:intron | 40.0% | |
| GTTTACTCACACTGCAGAAA+CGG | - | chr5.4:50918739-50918758 | None:intergenic | 40.0% | |
| TACATTGACATGGACAGACT+TGG | + | chr5.4:50917951-50917970 | MS.gene010139:CDS | 40.0% | |
| TGTTTGGGGAGACTATAGAT+GGG | + | chr5.4:50918069-50918088 | MS.gene010139:CDS | 40.0% | |
| TTGTTTGGGGAGACTATAGA+TGG | + | chr5.4:50918068-50918087 | MS.gene010139:CDS | 40.0% | |
| ! | AACTCCACTAACAGCCATTT+TGG | + | chr5.4:50918708-50918727 | MS.gene010139:intron | 40.0% |
| ! | ACGAACCTTTTCGCACATTT+AGG | - | chr5.4:50918143-50918162 | None:intergenic | 40.0% |
| ! | TCATTGGGTCGAGTTTGTTT+GGG | + | chr5.4:50918054-50918073 | MS.gene010139:CDS | 40.0% |
| ! | TTCGCACATTTAGGATCAAC+AGG | - | chr5.4:50918134-50918153 | None:intergenic | 40.0% |
| !! | ATTTAAACTTTTGGGGGTGG+AGG | + | chr5.4:50919698-50919717 | MS.gene010139:intron | 40.0% |
| !! | CACCCCTTTAAAATTGGTCT+TGG | + | chr5.4:50918809-50918828 | MS.gene010139:intron | 40.0% |
| CAAAGCTCAGCCAACTTATC+AGG | - | chr5.4:50918110-50918129 | None:intergenic | 45.0% | |
| GAACGTCACAGTTACCAAAC+GGG | + | chr5.4:50918514-50918533 | MS.gene010139:intron | 45.0% | |
| GAGTTGTAGCATCAGTCTGT+AGG | - | chr5.4:50919929-50919948 | None:intergenic | 45.0% | |
| GGGCAACTAGTTCAAGATGA+AGG | - | chr5.4:50918949-50918968 | None:intergenic | 45.0% | |
| GTGGAGGATAAAGTGAGAGA+GGG | + | chr5.4:50919714-50919733 | MS.gene010139:intron | 45.0% | |
| TGGAGGATAAAGTGAGAGAG+GGG | + | chr5.4:50919715-50919734 | MS.gene010139:intron | 45.0% | |
| TTTAGCACAACTCGGAGAGA+AGG | - | chr5.4:50918644-50918663 | None:intergenic | 45.0% | |
| ! | CATTGGGTCGAGTTTGTTTG+GGG | + | chr5.4:50918055-50918074 | MS.gene010139:CDS | 45.0% |
| ! | CCCCTATTTTGTCGTGTATC+TGG | + | chr5.4:50918966-50918985 | MS.gene010139:intron | 45.0% |
| ! | CTGATAAGTTGGCTGAGCTT+TGG | + | chr5.4:50918108-50918127 | MS.gene010139:CDS | 45.0% |
| ! | GTCATTGGGTCGAGTTTGTT+TGG | + | chr5.4:50918053-50918072 | MS.gene010139:CDS | 45.0% |
| ATGGACAGACTTGGAGATGC+TGG | + | chr5.4:50917960-50917979 | MS.gene010139:CDS | 50.0% | |
| CAGAAACGGAGTGGCCAAAA+TGG | - | chr5.4:50918725-50918744 | None:intergenic | 50.0% | |
| GGTGGAGGATAAAGTGAGAG+AGG | + | chr5.4:50919713-50919732 | MS.gene010139:intron | 50.0% | |
| GTGGCCAAAATGGCTGTTAG+TGG | - | chr5.4:50918715-50918734 | None:intergenic | 50.0% | |
| TGATCTGCCGGTGAATGGAT+CGG | - | chr5.4:50917880-50917899 | None:intergenic | 50.0% | |
| ! | ACTGCTAGCCTCGATGAGAT+CGG | + | chr5.4:50917903-50917922 | MS.gene010139:CDS | 50.0% |
| !! | GCTAGCAGTTGATGATCTGC+CGG | - | chr5.4:50917892-50917911 | None:intergenic | 50.0% |
| !! | GTTGATGATCTGCCGGTGAA+TGG | - | chr5.4:50917885-50917904 | None:intergenic | 50.0% |
| AGATCCGGGAGGAAACGAAG+GGG | + | chr5.4:50917986-50918005 | MS.gene010139:CDS | 55.0% | |
| CAGATCCGGGAGGAAACGAA+GGG | + | chr5.4:50917985-50918004 | MS.gene010139:CDS | 55.0% | |
| CGAAGGGGCAGAGAAGAATC+AGG | + | chr5.4:50918001-50918020 | MS.gene010139:CDS | 55.0% | |
| CTCACACTGCAGAAACGGAG+TGG | - | chr5.4:50918734-50918753 | None:intergenic | 55.0% | |
| CTTCGGATCCGATCTCATCG+AGG | - | chr5.4:50917914-50917933 | None:intergenic | 55.0% | |
| GGGCAGAGAAGAATCAGGTG+AGG | + | chr5.4:50918006-50918025 | MS.gene010139:CDS | 55.0% | |
| TGGAGATGCTGGAGCAGATC+CGG | + | chr5.4:50917971-50917990 | MS.gene010139:CDS | 55.0% | |
| CTGCCGGTGAATGGATCGGA+CGG | - | chr5.4:50917876-50917895 | None:intergenic | 60.0% | |
| GCAGATCCGGGAGGAAACGA+AGG | + | chr5.4:50917984-50918003 | MS.gene010139:CDS | 60.0% | |
| GGAGATGCTGGAGCAGATCC+GGG | + | chr5.4:50917972-50917991 | MS.gene010139:CDS | 60.0% | |
| TCCCCGTCCGATCCATTCAC+CGG | + | chr5.4:50917870-50917889 | MS.gene010139:CDS | 60.0% | |
| TCTGCCCCTTCGTTTCCTCC+CGG | - | chr5.4:50917993-50918012 | None:intergenic | 60.0% | |
| TGAATGGATCGGACGGGGAG+AGG | - | chr5.4:50917869-50917888 | None:intergenic | 60.0% | |
| TGCCGGTGAATGGATCGGAC+GGG | - | chr5.4:50917875-50917894 | None:intergenic | 60.0% | |
| GATGCTGGAGCAGATCCGGG+AGG | + | chr5.4:50917975-50917994 | MS.gene010139:CDS | 65.0% | |
| GCCGGTGAATGGATCGGACG+GGG | - | chr5.4:50917874-50917893 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 50917861 | 50919974 | 50917861 | ID=MS.gene010139 |
| chr5.4 | mRNA | 50917861 | 50919974 | 50917861 | ID=MS.gene010139.t1;Parent=MS.gene010139 |
| chr5.4 | exon | 50917861 | 50918156 | 50917861 | ID=MS.gene010139.t1.exon1;Parent=MS.gene010139.t1 |
| chr5.4 | CDS | 50917861 | 50918156 | 50917861 | ID=cds.MS.gene010139.t1;Parent=MS.gene010139.t1 |
| chr5.4 | exon | 50919842 | 50919974 | 50919842 | ID=MS.gene010139.t1.exon2;Parent=MS.gene010139.t1 |
| chr5.4 | CDS | 50919842 | 50919974 | 50919842 | ID=cds.MS.gene010139.t1;Parent=MS.gene010139.t1 |
| Gene Sequence |
| Protein sequence |
