AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene010161

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010161.t1 MTR_5g064950 79.321 324 43 2 1 324 1 300 0.0 522
MS.gene010161.t1 MTR_5g064950 79.452 292 37 1 1 292 1 269 1.96e-171 478
MS.gene010161.t1 MTR_3g099620 52.353 340 120 14 1 321 1 317 6.61e-98 292
MS.gene010161.t1 MTR_7g113830 44.073 329 145 12 1 321 14 311 8.18e-75 233
MS.gene010161.t1 MTR_1g082480 40.176 341 161 9 1 319 14 333 4.61e-68 216
MS.gene010161.t1 MTR_8g066770 52.113 213 95 4 113 324 104 310 1.64e-65 209
MS.gene010161.t1 MTR_1g082480 39.490 314 148 8 1 292 14 307 6.35e-60 195
MS.gene010161.t1 MTR_8g024210 41.633 245 118 4 73 312 133 357 2.46e-45 158
MS.gene010161.t1 MTR_0194s0050 40.741 216 116 5 105 312 166 377 4.32e-44 155
MS.gene010161.t1 MTR_2g022280 38.636 176 104 2 123 298 1 172 9.25e-34 123
MS.gene010161.t1 MTR_3g090850 29.560 318 167 9 46 317 19 325 2.89e-30 117
MS.gene010161.t1 MTR_1g028470 29.897 291 157 9 46 317 27 289 1.15e-26 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010161.t1 AT1G72210 45.481 343 136 10 1 319 1 316 3.12e-84 257
MS.gene010161.t1 AT1G72210 43.671 316 128 9 1 292 1 290 3.06e-72 226
MS.gene010161.t1 AT1G22490 43.284 335 142 12 1 319 1 303 7.28e-70 220
MS.gene010161.t1 AT1G22490 41.234 308 134 11 1 292 1 277 6.26e-57 187
MS.gene010161.t1 AT5G46690 44.118 238 89 8 113 319 78 302 1.22e-41 147
MS.gene010161.t1 AT4G01460 38.967 213 113 3 113 319 105 306 1.31e-41 147
MS.gene010161.t1 AT4G01460 38.967 213 113 3 113 319 105 306 1.31e-41 147
MS.gene010161.t1 AT5G65320 39.614 207 110 2 119 319 98 295 3.88e-41 145
MS.gene010161.t1 AT3G24140 38.462 221 120 3 103 312 177 392 9.24e-39 142
MS.gene010161.t1 AT2G46810 39.409 203 101 6 114 312 112 296 9.46e-39 139
MS.gene010161.t1 AT3G24140 38.462 221 120 3 103 312 177 392 1.12e-38 142
MS.gene010161.t1 AT2G46810 39.409 203 101 6 114 312 172 356 2.42e-38 139
MS.gene010161.t1 AT2G46810 39.409 203 101 6 114 312 184 368 3.55e-38 139
MS.gene010161.t1 AT3G61950 37.500 208 101 6 112 312 116 301 1.68e-37 136
MS.gene010161.t1 AT3G61950 37.500 208 101 6 112 312 167 352 9.87e-37 135
MS.gene010161.t1 AT3G61950 38.506 174 80 4 112 279 116 268 2.04e-35 130
MS.gene010161.t1 AT5G46690 43.602 211 76 7 113 292 78 276 9.29e-35 128
MS.gene010161.t1 AT5G65320 39.572 187 98 2 119 299 98 275 1.04e-34 128
MS.gene010161.t1 AT3G61950 38.506 174 80 4 112 279 167 319 1.10e-34 129
MS.gene010161.t1 AT2G46810 41.420 169 79 4 114 279 112 263 1.74e-34 129
MS.gene010161.t1 AT3G06120 35.263 190 98 5 123 298 1 179 7.29e-29 110
MS.gene010161.t1 AT5G53210 57.143 63 27 0 121 183 100 162 9.05e-19 86.3
MS.gene010161.t1 AT5G53210 57.143 63 27 0 121 183 100 162 1.18e-18 85.9
MS.gene010161.t1 AT3G61950 62.791 43 16 0 112 154 167 209 5.09e-12 64.7
MS.gene010161.t1 AT3G61950 62.791 43 16 0 112 154 167 209 5.09e-12 64.7

Find 65 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCACAATATCCTTTCAAAT+TGG 0.190211 5.2:-54862853 MS.gene010161:CDS
TGCCTCCTTCTTATGCAAAA+AGG 0.226402 5.2:-54862583 MS.gene010161:CDS
GTGGGAAGAGTGGAAGTTTC+AGG 0.228105 5.2:+54862779 None:intergenic
CATGTTTCCTCAATACTCTA+TGG 0.258942 5.2:-54862089 MS.gene010161:CDS
CATCCACACTGGAAACATTA+AGG 0.344730 5.2:+54861888 None:intergenic
TCACAATATCCTTTCAAATT+GGG 0.367011 5.2:-54862852 MS.gene010161:CDS
AGGTCAAATAATGGCCTTAG+AGG 0.371011 5.2:-54863032 None:intergenic
CCATGCCACGTGACTGATTA+TGG 0.383936 5.2:+54862032 None:intergenic
CATTGGTCTTTAACATTTGA+AGG 0.384395 5.2:+54862818 None:intergenic
TGAGCTATCACGTAGAATTC+AGG 0.385207 5.2:-54861021 MS.gene010161:CDS
GTTGTTGGGATTCAAAATCT+TGG 0.395613 5.2:-54861926 MS.gene010161:CDS
ACTTGGAGTGGTTTCAACTA+AGG 0.406246 5.2:+54862955 None:intergenic
ATGTTTCCTCAATACTCTAT+GGG 0.408818 5.2:-54862088 MS.gene010161:CDS
CGGTGCAATTAACTTCTTGA+AGG 0.418841 5.2:-54862224 MS.gene010161:CDS
CCACTCCAAGTGAAGGATCT+TGG 0.429067 5.2:-54862943 MS.gene010161:CDS
CAGGTTATGAAGATGGTTGT+TGG 0.441455 5.2:-54861941 MS.gene010161:CDS
GTCGTCGTTTGCTCTGACGA+GGG 0.441817 5.2:+54862723 None:intergenic
AGGTTATGAAGATGGTTGTT+GGG 0.442208 5.2:-54861940 MS.gene010161:CDS
CCAAGATCCTTCACTTGGAG+TGG 0.454095 5.2:+54862943 None:intergenic
CTGTAAATCAATGGATCTTG+TGG 0.471914 5.2:+54862998 None:intergenic
GGCAGATATAGAAGTGACTT+TGG 0.474900 5.2:-54862011 MS.gene010161:CDS
TGGCTCCAAGATCCTTCACT+TGG 0.493996 5.2:+54862938 None:intergenic
TGTTGTGGTGGATGCAAAAG+TGG 0.496117 5.2:+54862754 None:intergenic
TTTGCTCTGACGAGGGGCTG+TGG 0.500724 5.2:+54862730 None:intergenic
AATTAATAATAGGTAGAAGA+AGG 0.501607 5.2:-54861089 MS.gene010161:intron
CGTGACTGATTATGGTTGGT+AGG 0.510486 5.2:+54862040 None:intergenic
TGCATAAGAAGGAGGCATCA+AGG 0.514555 5.2:+54862589 None:intergenic
TCTTTGCAACTGTAAATCAA+TGG 0.515148 5.2:+54862989 None:intergenic
CCTTGTCTCGGTTAGTGCTA+AGG 0.528899 5.2:-54861858 MS.gene010161:intron
AAGGAGGCATCAAGGATTTG+AGG 0.530586 5.2:+54862597 None:intergenic
CTTCAAATGTTAAAGACCAA+TGG 0.535334 5.2:-54862817 MS.gene010161:CDS
TTGTTTGGCAACCGTAGTTG+TGG 0.536558 5.2:+54862918 None:intergenic
GGTGATCAAGCATCAATAGT+TGG 0.540135 5.2:-54862247 MS.gene010161:CDS
ATTAATAATAGGTAGAAGAA+GGG 0.541316 5.2:-54861088 MS.gene010161:intron
GTGAAGAGTGTGAATTCCAT+TGG 0.541764 5.2:+54862801 None:intergenic
CAACTACTGAACACAGTGGA+TGG 0.542124 5.2:-54861062 MS.gene010161:CDS
AGGGGCTGTGGTTGTTGTGG+TGG 0.542969 5.2:+54862742 None:intergenic
AAGAAGAATCCCAATTTGAA+AGG 0.545406 5.2:+54862843 None:intergenic
AAAAGTGGAAGTGGGAAGAG+TGG 0.547176 5.2:+54862769 None:intergenic
AAGAGGAAATCGAGAGCCAC+AGG 0.553917 5.2:-54862679 MS.gene010161:CDS
ACGAGGGGCTGTGGTTGTTG+TGG 0.561823 5.2:+54862739 None:intergenic
GGTGGATGCAAAAGTGGAAG+TGG 0.562310 5.2:+54862760 None:intergenic
CCATAATCAGTCACGTGGCA+TGG 0.565688 5.2:-54862032 MS.gene010161:CDS
ACAAGGACAGGTTATGAAGA+TGG 0.569307 5.2:-54861948 MS.gene010161:CDS
CGTCGTCGTTTGCTCTGACG+AGG 0.569503 5.2:+54862722 None:intergenic
ACATAATCTACAATTCATGA+AGG 0.570662 5.2:-54862194 MS.gene010161:CDS
GTGACTGATTATGGTTGGTA+GGG 0.576193 5.2:+54862041 None:intergenic
GTTGAAACCACTCCAAGTGA+AGG 0.604132 5.2:-54862950 MS.gene010161:CDS
GGGTAGCACGTGATGTTCTG+AGG 0.605537 5.2:+54862061 None:intergenic
TCGTCGTTTGCTCTGACGAG+GGG 0.613990 5.2:+54862724 None:intergenic
CCTTAGCACTAACCGAGACA+AGG 0.614421 5.2:+54861858 None:intergenic
GGATGATAATGTCCTTGTCT+CGG 0.618077 5.2:-54861870 MS.gene010161:CDS
GGTGCACCCATAGAGTATTG+AGG 0.621516 5.2:+54862082 None:intergenic
GTGGATGCAAAAGTGGAAGT+GGG 0.621519 5.2:+54862761 None:intergenic
GGATCTTGGAGCCACAACTA+CGG 0.621648 5.2:-54862929 MS.gene010161:CDS
ACACCTTAATGTTTCCAGTG+TGG 0.628319 5.2:-54861891 MS.gene010161:CDS
GCTATCACGTAGAATTCAGG+TGG 0.646782 5.2:-54861018 MS.gene010161:CDS
CATAATCTACAATTCATGAA+GGG 0.647917 5.2:-54862193 MS.gene010161:CDS
AAGGACATTATCATCCACAC+TGG 0.650900 5.2:+54861877 None:intergenic
GCCACGTGACTGATTATGGT+TGG 0.656195 5.2:+54862036 None:intergenic
GATCAAGCATCAATAGTTGG+CGG 0.664504 5.2:-54862244 MS.gene010161:CDS
CTGCAATGTGAGTCATCCTG+TGG 0.677176 5.2:+54862663 None:intergenic
ACCAACCATAATCAGTCACG+TGG 0.705729 5.2:-54862037 MS.gene010161:CDS
TCAAGGATTTGAGGACATCG+AGG 0.738437 5.2:+54862606 None:intergenic
GTGTCAACTACTGAACACAG+TGG 0.768612 5.2:-54861066 MS.gene010161:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTAATCACTATTAAA+CGG - chr5.2:54862390-54862409 MS.gene010161:intron 10.0%
!! AACTTTATAAATATAATATG+TGG - chr5.2:54862420-54862439 MS.gene010161:intron 10.0%
!! TATAATTTAAACAAGTAATA+AGG + chr5.2:54862839-54862858 None:intergenic 10.0%
!! TATATATTGGAATTAATAAT+AGG - chr5.2:54862921-54862940 MS.gene010161:CDS 10.0%
!!! AATTTATTTTTTTTGACAAA+AGG - chr5.2:54862889-54862908 MS.gene010161:CDS 10.0%
!!! TGAAAATTTTGATTTTTTTT+TGG + chr5.2:54861722-54861741 None:intergenic 10.0%
!! AAGGTTACTAATTTATATAT+TGG - chr5.2:54862908-54862927 MS.gene010161:CDS 15.0%
!! AAATTCAATACTATACCATT+TGG - chr5.2:54862477-54862496 MS.gene010161:intron 20.0%
!! AATTAATAATAGGTAGAAGA+AGG - chr5.2:54862931-54862950 MS.gene010161:CDS 20.0%
!! ATGTGTTATAAAATTGTTGT+TGG + chr5.2:54861667-54861686 None:intergenic 20.0%
!! ATTAATAATAGGTAGAAGAA+GGG - chr5.2:54862932-54862951 MS.gene010161:CDS 20.0%
!!! ATTTTTGTTGAGAAAATTGT+TGG + chr5.2:54862376-54862395 None:intergenic 20.0%
!!! GAAAATAGTGAAAAACATTT+TGG - chr5.2:54862861-54862880 MS.gene010161:CDS 20.0%
!!! TGTGTTATAAAATTGTTGTT+GGG + chr5.2:54861666-54861685 None:intergenic 20.0%
! AACATGAAAAACTCAGTAAA+AGG + chr5.2:54861917-54861936 None:intergenic 25.0%
! AATCAAGTGATAAAAAGACT+TGG - chr5.2:54862267-54862286 MS.gene010161:intron 25.0%
! ACATAATCTACAATTCATGA+AGG - chr5.2:54861826-54861845 MS.gene010161:intron 25.0%
! ATAAAATTCACTGTCAACAA+GGG - chr5.2:54862241-54862260 MS.gene010161:CDS 25.0%
! ATAAGGTTTAAAAATTGACG+TGG + chr5.2:54862822-54862841 None:intergenic 25.0%
! ATAATGTTGAAAAAACGACA+AGG - chr5.2:54862055-54862074 MS.gene010161:CDS 25.0%
! ATCACAATATCCTTTCAAAT+TGG - chr5.2:54861167-54861186 MS.gene010161:intron 25.0%
! CATAATCTACAATTCATGAA+GGG - chr5.2:54861827-54861846 MS.gene010161:intron 25.0%
! CTTGTGTAATATTTACCAAA+TGG + chr5.2:54862495-54862514 None:intergenic 25.0%
! TATAAAATTCACTGTCAACA+AGG - chr5.2:54862240-54862259 MS.gene010161:CDS 25.0%
! TCACAATATCCTTTCAAATT+GGG - chr5.2:54861168-54861187 MS.gene010161:intron 25.0%
! TGTTTCATAAACACAATTGT+TGG - chr5.2:54861517-54861536 MS.gene010161:intron 25.0%
!! GTGTTATAAAATTGTTGTTG+GGG + chr5.2:54861665-54861684 None:intergenic 25.0%
AAGAAGAATCCCAATTTGAA+AGG + chr5.2:54861180-54861199 None:intergenic 30.0%
AGAGAAATATTCGATTGAGA+GGG - chr5.2:54862334-54862353 MS.gene010161:intron 30.0%
ATGAAAAACTCAGTAAAAGG+TGG + chr5.2:54861914-54861933 None:intergenic 30.0%
ATGTTTCCTCAATACTCTAT+GGG - chr5.2:54861932-54861951 MS.gene010161:CDS 30.0%
CTCGTTAAATAAATGATGAG+TGG - chr5.2:54862291-54862310 MS.gene010161:intron 30.0%
CTTCAAATGTTAAAGACCAA+TGG - chr5.2:54861203-54861222 MS.gene010161:intron 30.0%
TAGAGAAATATTCGATTGAG+AGG - chr5.2:54862333-54862352 MS.gene010161:intron 30.0%
TCTTTGCAACTGTAAATCAA+TGG + chr5.2:54861034-54861053 None:intergenic 30.0%
TGAACCACATGTAGAATTTA+GGG + chr5.2:54861746-54861765 None:intergenic 30.0%
TGTGAATGCAAAAAATGAAG+AGG - chr5.2:54861324-54861343 MS.gene010161:intron 30.0%
TTGAACCACATGTAGAATTT+AGG + chr5.2:54861747-54861766 None:intergenic 30.0%
! ATTACCCTTTTTGCATAAGA+AGG + chr5.2:54861445-54861464 None:intergenic 30.0%
! GATCTTCTTCATCTTTTGTT+TGG + chr5.2:54861120-54861139 None:intergenic 30.0%
!! ATCTACTCTAAAATCACAGA+TGG + chr5.2:54862631-54862650 None:intergenic 30.0%
!! CATTGGTCTTTAACATTTGA+AGG + chr5.2:54861205-54861224 None:intergenic 30.0%
!!! CTTCATTTTTTGCATTCACA+GGG + chr5.2:54861324-54861343 None:intergenic 30.0%
!!! TCTTCATTTTTTGCATTCAC+AGG + chr5.2:54861325-54861344 None:intergenic 30.0%
AAAATTGTTGGAGACATGGT+AGG + chr5.2:54862364-54862383 None:intergenic 35.0%
AACAGAGAATAAGGTGAACT+AGG - chr5.2:54862772-54862791 MS.gene010161:CDS 35.0%
ACAGAGAATAAGGTGAACTA+GGG - chr5.2:54862773-54862792 MS.gene010161:CDS 35.0%
AGGTTATGAAGATGGTTGTT+GGG - chr5.2:54862080-54862099 MS.gene010161:CDS 35.0%
AGGTTTAAAAATTGACGTGG+AGG + chr5.2:54862819-54862838 None:intergenic 35.0%
CATGTTTCCTCAATACTCTA+TGG - chr5.2:54861931-54861950 MS.gene010161:CDS 35.0%
CTACATGTGGTTCAAAAACA+GGG - chr5.2:54861752-54861771 MS.gene010161:intron 35.0%
CTGTAAATCAATGGATCTTG+TGG + chr5.2:54861025-54861044 None:intergenic 35.0%
GAGAAATATTCGATTGAGAG+GGG - chr5.2:54862335-54862354 MS.gene010161:intron 35.0%
GTTGTTGGGATTCAAAATCT+TGG - chr5.2:54862094-54862113 MS.gene010161:CDS 35.0%
TCAACCCTAAATTCTACATG+TGG - chr5.2:54861739-54861758 MS.gene010161:intron 35.0%
TCTACATGTGGTTCAAAAAC+AGG - chr5.2:54861751-54861770 MS.gene010161:intron 35.0%
TGAGAAAATTGTTGGAGACA+TGG + chr5.2:54862368-54862387 None:intergenic 35.0%
TGGAAAAACTATAGCCTCTA+AGG + chr5.2:54861005-54861024 None:intergenic 35.0%
! ACTTTGATGCCTTATGGTTT+TGG - chr5.2:54861588-54861607 MS.gene010161:intron 35.0%
! CTTTGATGCCTTATGGTTTT+GGG - chr5.2:54861589-54861608 MS.gene010161:intron 35.0%
!! ATTTGCTGTTTGCATCATGA+CGG - chr5.2:54862739-54862758 MS.gene010161:CDS 35.0%
!!! CCTCAATTTTTAGTCGATCT+GGG + chr5.2:54861566-54861585 None:intergenic 35.0%
!!! TCCTCAATTTTTAGTCGATC+TGG + chr5.2:54861567-54861586 None:intergenic 35.0%
AAGGACATTATCATCCACAC+TGG + chr5.2:54862146-54862165 None:intergenic 40.0%
ACAAGGACAGGTTATGAAGA+TGG - chr5.2:54862072-54862091 MS.gene010161:CDS 40.0%
ACACCTTAATGTTTCCAGTG+TGG - chr5.2:54862129-54862148 MS.gene010161:CDS 40.0%
ACTTGGAGTGGTTTCAACTA+AGG + chr5.2:54861068-54861087 None:intergenic 40.0%
CAGGTTATGAAGATGGTTGT+TGG - chr5.2:54862079-54862098 MS.gene010161:CDS 40.0%
CATCCACACTGGAAACATTA+AGG + chr5.2:54862135-54862154 None:intergenic 40.0%
CCCAGATCGACTAAAAATTG+AGG - chr5.2:54861563-54861582 MS.gene010161:intron 40.0%
CGCGTACTTAACAGAGAATA+AGG - chr5.2:54862763-54862782 MS.gene010161:CDS 40.0%
CGGTGCAATTAACTTCTTGA+AGG - chr5.2:54861796-54861815 MS.gene010161:intron 40.0%
CGGTTAGTGCTAAGGTAAAT+TGG - chr5.2:54862170-54862189 MS.gene010161:CDS 40.0%
GAGGAAACTTTGATGCCTTA+TGG - chr5.2:54861582-54861601 MS.gene010161:intron 40.0%
GATCAAGCATCAATAGTTGG+CGG - chr5.2:54861776-54861795 MS.gene010161:intron 40.0%
GCCTCCTTCTTATGCAAAAA+GGG - chr5.2:54861438-54861457 MS.gene010161:intron 40.0%
GGCAGATATAGAAGTGACTT+TGG - chr5.2:54862009-54862028 MS.gene010161:CDS 40.0%
GGTGATCAAGCATCAATAGT+TGG - chr5.2:54861773-54861792 MS.gene010161:intron 40.0%
GTTGAAAAAACGACAAGGAC+AGG - chr5.2:54862060-54862079 MS.gene010161:CDS 40.0%
TGAGCTATCACGTAGAATTC+AGG - chr5.2:54862999-54863018 MS.gene010161:CDS 40.0%
TGCCTCCTTCTTATGCAAAA+AGG - chr5.2:54861437-54861456 MS.gene010161:intron 40.0%
! ACCCTTTTTGCATAAGAAGG+AGG + chr5.2:54861442-54861461 None:intergenic 40.0%
! GGATGATAATGTCCTTGTCT+CGG - chr5.2:54862150-54862169 MS.gene010161:CDS 40.0%
! GTGAAGAGTGTGAATTCCAT+TGG + chr5.2:54861222-54861241 None:intergenic 40.0%
! GTGACTGATTATGGTTGGTA+GGG + chr5.2:54861982-54862001 None:intergenic 40.0%
AAAAGTGGAAGTGGGAAGAG+TGG + chr5.2:54861254-54861273 None:intergenic 45.0%
ACCAACCATAATCAGTCACG+TGG - chr5.2:54861983-54862002 MS.gene010161:CDS 45.0%
CAACTACTGAACACAGTGGA+TGG - chr5.2:54862958-54862977 MS.gene010161:CDS 45.0%
CACTCGTACCCAAAACCATA+AGG + chr5.2:54861600-54861619 None:intergenic 45.0%
CGTGACTGATTATGGTTGGT+AGG + chr5.2:54861983-54862002 None:intergenic 45.0%
GCTATCACGTAGAATTCAGG+TGG - chr5.2:54863002-54863021 MS.gene010161:CDS 45.0%
GTGGATGCAAAAGTGGAAGT+GGG + chr5.2:54861262-54861281 None:intergenic 45.0%
GTGTCAACTACTGAACACAG+TGG - chr5.2:54862954-54862973 MS.gene010161:CDS 45.0%
GTTGAAACCACTCCAAGTGA+AGG - chr5.2:54861070-54861089 MS.gene010161:CDS 45.0%
TCAAGGATTTGAGGACATCG+AGG + chr5.2:54861417-54861436 None:intergenic 45.0%
TCCTAGACGTTTAACGCATC+CGG - chr5.2:54861627-54861646 MS.gene010161:intron 45.0%
TTGTTTGGCAACCGTAGTTG+TGG + chr5.2:54861105-54861124 None:intergenic 45.0%
! AATTGTTGTTGGGGAGTCTG+AGG + chr5.2:54861656-54861675 None:intergenic 45.0%
!! AAGGAGGCATCAAGGATTTG+AGG + chr5.2:54861426-54861445 None:intergenic 45.0%
!! TGCATAAGAAGGAGGCATCA+AGG + chr5.2:54861434-54861453 None:intergenic 45.0%
!! TGTTGTGGTGGATGCAAAAG+TGG + chr5.2:54861269-54861288 None:intergenic 45.0%
!!! TATGGTTTTGGGTACGAGTG+TGG - chr5.2:54861600-54861619 MS.gene010161:intron 45.0%
AAGAGGAAATCGAGAGCCAC+AGG - chr5.2:54861341-54861360 MS.gene010161:intron 50.0%
CCAAGATCCTTCACTTGGAG+TGG + chr5.2:54861080-54861099 None:intergenic 50.0%
CCACTCCAAGTGAAGGATCT+TGG - chr5.2:54861077-54861096 MS.gene010161:CDS 50.0%
CCATAATCAGTCACGTGGCA+TGG - chr5.2:54861988-54862007 MS.gene010161:CDS 50.0%
CCATGCCACGTGACTGATTA+TGG + chr5.2:54861991-54862010 None:intergenic 50.0%
CCTAGACGTTTAACGCATCC+GGG - chr5.2:54861628-54861647 MS.gene010161:intron 50.0%
CCTTAGCACTAACCGAGACA+AGG + chr5.2:54862165-54862184 None:intergenic 50.0%
CCTTGTCTCGGTTAGTGCTA+AGG - chr5.2:54862162-54862181 MS.gene010161:CDS 50.0%
CTGCAATGTGAGTCATCCTG+TGG + chr5.2:54861360-54861379 None:intergenic 50.0%
GCCACGTGACTGATTATGGT+TGG + chr5.2:54861987-54862006 None:intergenic 50.0%
GGATCTTGGAGCCACAACTA+CGG - chr5.2:54861091-54861110 MS.gene010161:intron 50.0%
GGTGGATGCAAAAGTGGAAG+TGG + chr5.2:54861263-54861282 None:intergenic 50.0%
GTGGGAAGAGTGGAAGTTTC+AGG + chr5.2:54861244-54861263 None:intergenic 50.0%
TGGCTCCAAGATCCTTCACT+TGG + chr5.2:54861085-54861104 None:intergenic 50.0%
!! GGTGCACCCATAGAGTATTG+AGG + chr5.2:54861941-54861960 None:intergenic 50.0%
CCCGGATGCGTTAAACGTCT+AGG + chr5.2:54861631-54861650 None:intergenic 55.0%
GGGTAGCACGTGATGTTCTG+AGG + chr5.2:54861962-54861981 None:intergenic 55.0%
GTCGTCGTTTGCTCTGACGA+GGG + chr5.2:54861300-54861319 None:intergenic 55.0%
TCGTCGTTTGCTCTGACGAG+GGG + chr5.2:54861299-54861318 None:intergenic 55.0%
ACGAGGGGCTGTGGTTGTTG+TGG + chr5.2:54861284-54861303 None:intergenic 60.0%
AGGGGCTGTGGTTGTTGTGG+TGG + chr5.2:54861281-54861300 None:intergenic 60.0%
CGTCGTCGTTTGCTCTGACG+AGG + chr5.2:54861301-54861320 None:intergenic 60.0%
TTTGCTCTGACGAGGGGCTG+TGG + chr5.2:54861293-54861312 None:intergenic 60.0%
GTTGGGGAGTCTGAGGAGCC+CGG + chr5.2:54861649-54861668 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 54860998 54863044 54860998 ID=MS.gene010161
chr5.2 mRNA 54860998 54863044 54860998 ID=MS.gene010161.t1;Parent=MS.gene010161
chr5.2 exon 54862583 54863044 54862583 ID=MS.gene010161.t1.exon1;Parent=MS.gene010161.t1
chr5.2 CDS 54862583 54863044 54862583 ID=cds.MS.gene010161.t1;Parent=MS.gene010161.t1
chr5.2 exon 54861859 54862269 54861859 ID=MS.gene010161.t1.exon2;Parent=MS.gene010161.t1
chr5.2 CDS 54861859 54862269 54861859 ID=cds.MS.gene010161.t1;Parent=MS.gene010161.t1
chr5.2 exon 54860998 54861099 54860998 ID=MS.gene010161.t1.exon3;Parent=MS.gene010161.t1
chr5.2 CDS 54860998 54861099 54860998 ID=cds.MS.gene010161.t1;Parent=MS.gene010161.t1
Gene Sequence

>MS.gene010161

ATGGCCTTAGAGGCTATAGTTTTTCCACAAGATCCATTGATTTACAGTTGCAAAGACTACTTGTACTCCTTAGTTGAAACCACTCCAAGTGAAGGATCTTGGAGCCACAACTACGGTTGCCAAACAAAAGATGAAGAAGATCTTTTTAAAATCATCAGTAATAGCTTAGATCACAATATCCTTTCAAATTGGGATTCTTCTTCTCCTTCAAATGTTAAAGACCAATGGAATTCACACTCTTCACCTGAAACTTCCACTCTTCCCACTTCCACTTTTGCATCCACCACAACAACCACAGCCCCTCGTCAGAGCAAACGACGACGCCCTGTGAATGCAAAAAATGAAGAGGAAATCGAGAGCCACAGGATGACTCACATTGCAGTTGAGCGCAATCGAAGAAAACAGATGAATGAGTACCTCGATGTCCTCAAATCCTTGATGCCTCCTTCTTATGCAAAAAGGGTAATTTTATACTTTGTTTATGTGTCAAAATGTTCATGTTTAATGTCTTTGTATCATTGTTTCATAAACACAATTGTTGGAAATCAAGTGCAAGTGATTATGTCCCAGATCGACTAAAAATTGAGGAAACTTTGATGCCTTATGGTTTTGGGTACGAGTGTGGTGTCTCCTAGACGTTTAACGCATCCGGGCTCCTCAGACTCCCCAACAACAATTTTATAACACATGATATCAATTTTGTACTTTGTAATAGTTAGAACCAAAAAAAAATCAAAATTTTCAACCCTAAATTCTACATGTGGTTCAAAAACAGGGTGATCAAGCATCAATAGTTGGCGGTGCAATTAACTTCTTGAAGGAGCTAGAACATAATCTACAATTCATGAAGGGACAAAAGAAAATAAACAAACAAGCTCATGAAAATAGTTTCATTACTTGTTCTTGTTCATCACCACCTTTTACTGAGTTTTTCATGTTTCCTCAATACTCTATGGGTGCACCTCAGAACATCACGTGCTACCCTACCAACCATAATCAGTCACGTGGCATGGCAGATATAGAAGTGACTTTGGTTGATAGTCATACAAATATAAATATAATGTTGAAAAAACGACAAGGACAGGTTATGAAGATGGTTGTTGGGATTCAAAATCTTGGCTTCAACATTCTACACCTTAATGTTTCCAGTGTGGATGATAATGTCCTTGTCTCGGTTAGTGCTAAGGTAAATTGGTTTACATTTTGTTTGATGCTAATTTATGTCTTATTCGCATTCTAAAATATAAAATTCACTGTCAACAAGGGTTAAATCAAGTGATAAAAAGACTTGGACTCGTTAAATAAATGATGAGTGGTTGTTTAAACTCATGTGCATAGAGAAATATTCGATTGAGAGGGGAAACCTACCATGTCTCCAACAATTTTCTCAACAAAAATTAATCACTATTAAACGGTAGTGAAAACTTTATAAATATAATATGTGGTAAAAAAAAAAAAAATCACTACTATTACTATATAAAATTCAATACTATACCATTTGGTAAATATTACACAAGTTAAATTCATGTTAACATCAATGTTGATATTTCAATATGATATTAAATAATGAGTTTAATTTTTGTACATTATTATTGTAAAAATATTTACACTGTGAAGAGATCAAAACTATCCATCTGTGATTTTAGAGTAGATAAAAATATAAAAGTCAAATATTTTAAATGATTTTGCAGATAATTGATTGATAGTATAAAACTTTGATTAGTATTATATGCAGCAAACGATTTGCTGTTTGCATCATGACGGTCGCGTACTTAACAGAGAATAAGGTGAACTAGGGTGACTTTCAAAAAATCAAAACCTCCACGTCAATTTTTAAACCTTATTACTTGTTTAAATTATATTGAAAATAGTGAAAAACATTTTGGTTACTAATTTATTTTTTTTGACAAAAGGTTACTAATTTATATATTGGAATTAATAATAGGTAGAAGAAGGGTGTCAACTACTGAACACAGTGGATGGAATTGCAGCTGCAGTGAATGAGCTATCACGTAGAATTCAGGTGGAAGATGCTGCTTTGACCTGA
Protein sequence

>MS.gene010161.t1

MALEAIVFPQDPLIYSCKDYLYSLVETTPSEGSWSHNYGCQTKDEEDLFKIISNSLDHNILSNWDSSSPSNVKDQWNSHSSPETSTLPTSTFASTTTTTAPRQSKRRRPVNAKNEEEIESHRMTHIAVERNRRKQMNEYLDVLKSLMPPSYAKRGDQASIVGGAINFLKELEHNLQFMKGQKKINKQAHENSFITCSCSSPPFTEFFMFPQYSMGAPQNITCYPTNHNQSRGMADIEVTLVDSHTNINIMLKKRQGQVMKMVVGIQNLGFNILHLNVSSVDDNVLVSVSAKVEEGCQLLNTVDGIAAAVNELSRRIQVEDAALT