Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010194.t1 | RHN62980.1 | 96.6 | 232 | 8 | 0 | 1 | 232 | 1 | 232 | 4.80E-135 | 490.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010194.t1 | Q8VWG3 | 72.2 | 176 | 48 | 1 | 51 | 225 | 108 | 283 | 1.9e-79 | 297.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010194.t1 | A0A396IBK2 | 96.6 | 232 | 8 | 0 | 1 | 232 | 1 | 232 | 3.4e-135 | 490.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene010194.t1 | TF | C2H2 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010194.t1 | MTR_1g093095 | 67.816 | 174 | 51 | 2 | 61 | 229 | 87 | 260 | 3.26e-85 | 255 |
MS.gene010194.t1 | MTR_2g090745 | 35.404 | 161 | 94 | 5 | 59 | 218 | 8 | 159 | 1.43e-21 | 92.4 |
MS.gene010194.t1 | MTR_4g059870 | 34.211 | 152 | 89 | 5 | 69 | 218 | 49 | 191 | 3.32e-20 | 89.0 |
MS.gene010194.t1 | MTR_1g112270 | 33.540 | 161 | 95 | 5 | 61 | 218 | 56 | 207 | 3.51e-20 | 89.0 |
MS.gene010194.t1 | MTR_2g093960 | 35.526 | 152 | 87 | 5 | 69 | 218 | 43 | 185 | 9.69e-20 | 87.4 |
MS.gene010194.t1 | MTR_1g112270 | 33.775 | 151 | 90 | 4 | 69 | 218 | 55 | 196 | 2.01e-19 | 87.0 |
MS.gene010194.t1 | MTR_1g094115 | 35.099 | 151 | 88 | 5 | 69 | 218 | 58 | 199 | 4.01e-19 | 85.9 |
MS.gene010194.t1 | MTR_8g017210 | 32.911 | 158 | 95 | 5 | 63 | 218 | 66 | 214 | 5.29e-19 | 85.5 |
MS.gene010194.t1 | MTR_1g016010 | 32.895 | 152 | 91 | 5 | 69 | 218 | 52 | 194 | 1.24e-18 | 84.3 |
MS.gene010194.t1 | MTR_2g099990 | 32.911 | 158 | 95 | 5 | 63 | 218 | 50 | 198 | 4.89e-18 | 82.8 |
MS.gene010194.t1 | MTR_1g094115 | 37.778 | 135 | 74 | 5 | 85 | 218 | 57 | 182 | 5.52e-18 | 82.8 |
MS.gene010194.t1 | MTR_2g099990 | 33.333 | 138 | 82 | 4 | 82 | 218 | 1 | 129 | 1.20e-16 | 78.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010194.t1 | AT1G34790 | 66.010 | 203 | 54 | 2 | 40 | 227 | 83 | 285 | 1.77e-96 | 284 |
MS.gene010194.t1 | AT3G57670 | 69.832 | 179 | 54 | 0 | 47 | 225 | 177 | 355 | 2.03e-91 | 274 |
MS.gene010194.t1 | AT1G51220 | 76.250 | 160 | 38 | 0 | 72 | 231 | 163 | 322 | 1.74e-90 | 270 |
MS.gene010194.t1 | AT3G20880 | 58.636 | 220 | 56 | 2 | 39 | 224 | 175 | 393 | 3.32e-89 | 269 |
MS.gene010194.t1 | AT1G13290 | 65.128 | 195 | 58 | 4 | 40 | 228 | 54 | 244 | 1.44e-87 | 261 |
MS.gene010194.t1 | AT1G08290 | 52.941 | 255 | 76 | 5 | 6 | 224 | 72 | 318 | 3.12e-85 | 256 |
MS.gene010194.t1 | AT1G34370 | 41.667 | 168 | 87 | 6 | 66 | 224 | 12 | 177 | 1.82e-30 | 114 |
MS.gene010194.t1 | AT1G34370 | 37.500 | 200 | 114 | 6 | 34 | 224 | 190 | 387 | 6.56e-30 | 116 |
MS.gene010194.t1 | AT1G34370 | 37.500 | 200 | 114 | 6 | 34 | 224 | 190 | 387 | 6.56e-30 | 116 |
MS.gene010194.t1 | AT5G22890 | 37.580 | 157 | 89 | 5 | 80 | 229 | 211 | 365 | 3.21e-24 | 99.4 |
MS.gene010194.t1 | AT5G03150 | 34.437 | 151 | 90 | 4 | 69 | 218 | 64 | 206 | 4.42e-21 | 91.7 |
MS.gene010194.t1 | AT5G44160 | 34.810 | 158 | 92 | 5 | 63 | 218 | 41 | 189 | 4.71e-20 | 88.6 |
MS.gene010194.t1 | AT5G44160 | 34.437 | 151 | 89 | 4 | 69 | 218 | 9 | 150 | 8.09e-20 | 87.8 |
MS.gene010194.t1 | AT2G02080 | 33.158 | 190 | 106 | 7 | 34 | 218 | 33 | 206 | 1.19e-19 | 87.4 |
MS.gene010194.t1 | AT2G02080 | 33.158 | 190 | 106 | 7 | 34 | 218 | 33 | 206 | 1.19e-19 | 87.4 |
MS.gene010194.t1 | AT2G02080 | 33.158 | 190 | 106 | 7 | 34 | 218 | 33 | 206 | 1.19e-19 | 87.4 |
MS.gene010194.t1 | AT2G02080 | 33.158 | 190 | 106 | 7 | 34 | 218 | 33 | 206 | 1.19e-19 | 87.4 |
MS.gene010194.t1 | AT5G60470 | 35.484 | 155 | 89 | 5 | 63 | 214 | 48 | 194 | 1.28e-19 | 87.0 |
MS.gene010194.t1 | AT5G60470 | 34.320 | 169 | 98 | 6 | 49 | 214 | 32 | 190 | 1.32e-19 | 87.0 |
MS.gene010194.t1 | AT1G14580 | 31.683 | 202 | 121 | 6 | 18 | 218 | 20 | 205 | 1.42e-19 | 87.0 |
MS.gene010194.t1 | AT1G14580 | 31.683 | 202 | 121 | 6 | 18 | 218 | 20 | 205 | 1.42e-19 | 87.0 |
MS.gene010194.t1 | AT1G14580 | 31.683 | 202 | 121 | 6 | 18 | 218 | 34 | 219 | 1.57e-19 | 87.0 |
MS.gene010194.t1 | AT5G60470 | 35.811 | 148 | 85 | 4 | 69 | 214 | 46 | 185 | 1.68e-19 | 87.0 |
MS.gene010194.t1 | AT5G66730 | 33.553 | 152 | 89 | 5 | 69 | 218 | 43 | 184 | 3.18e-19 | 86.3 |
MS.gene010194.t1 | AT1G55110 | 33.548 | 155 | 92 | 5 | 66 | 218 | 71 | 216 | 3.50e-19 | 85.9 |
MS.gene010194.t1 | AT1G55110 | 33.548 | 155 | 92 | 5 | 66 | 218 | 71 | 216 | 3.50e-19 | 85.9 |
MS.gene010194.t1 | AT1G55110 | 33.548 | 155 | 92 | 5 | 66 | 218 | 71 | 216 | 3.50e-19 | 85.9 |
MS.gene010194.t1 | AT2G02070 | 34.932 | 146 | 85 | 4 | 74 | 218 | 68 | 204 | 3.71e-19 | 86.3 |
MS.gene010194.t1 | AT2G02070 | 34.932 | 146 | 85 | 4 | 74 | 218 | 68 | 204 | 3.71e-19 | 86.3 |
MS.gene010194.t1 | AT1G03840 | 33.544 | 158 | 94 | 5 | 63 | 218 | 45 | 193 | 4.99e-19 | 85.5 |
MS.gene010194.t1 | AT3G45260 | 35.849 | 159 | 90 | 6 | 63 | 218 | 43 | 192 | 5.61e-19 | 85.5 |
MS.gene010194.t1 | AT3G45260 | 35.849 | 159 | 90 | 6 | 63 | 218 | 43 | 192 | 5.61e-19 | 85.5 |
MS.gene010194.t1 | AT1G03840 | 33.758 | 157 | 93 | 5 | 63 | 218 | 45 | 191 | 5.80e-19 | 85.5 |
MS.gene010194.t1 | AT2G02080 | 36.842 | 133 | 74 | 4 | 87 | 218 | 6 | 129 | 2.38e-18 | 83.6 |
MS.gene010194.t1 | AT2G02080 | 36.842 | 133 | 74 | 4 | 87 | 218 | 6 | 129 | 2.38e-18 | 83.6 |
MS.gene010194.t1 | AT3G50700 | 31.319 | 182 | 110 | 7 | 42 | 218 | 15 | 186 | 8.18e-18 | 82.0 |
MS.gene010194.t1 | AT4G02670 | 33.117 | 154 | 94 | 4 | 66 | 218 | 61 | 206 | 1.08e-17 | 81.3 |
MS.gene010194.t1 | AT4G02670 | 33.117 | 154 | 94 | 4 | 66 | 218 | 63 | 208 | 1.10e-17 | 81.3 |
MS.gene010194.t1 | AT3G13810 | 31.818 | 154 | 96 | 4 | 66 | 218 | 78 | 223 | 1.97e-17 | 80.9 |
MS.gene010194.t1 | AT3G13810 | 31.818 | 154 | 96 | 4 | 66 | 218 | 78 | 223 | 1.97e-17 | 80.9 |
MS.gene010194.t1 | AT3G13810 | 31.818 | 154 | 96 | 4 | 66 | 218 | 59 | 204 | 2.15e-17 | 80.9 |
MS.gene010194.t1 | AT3G13810 | 31.818 | 154 | 96 | 4 | 66 | 218 | 73 | 218 | 2.24e-17 | 80.9 |
MS.gene010194.t1 | AT3G13810 | 31.788 | 151 | 94 | 4 | 69 | 218 | 82 | 224 | 3.12e-17 | 80.5 |
MS.gene010194.t1 | AT3G13810 | 31.788 | 151 | 94 | 4 | 69 | 218 | 68 | 210 | 3.15e-17 | 80.5 |
Find 50 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTTCATCTGGTGGGATTTA+AGG | 0.074753 | 5.1:+49222046 | MS.gene010194:CDS |
CTAAGCCATTGAAGGATTTC+AGG | 0.257197 | 5.1:+49221813 | MS.gene010194:CDS |
CCACCAGATGAAGAAGAAAA+AGG | 0.280585 | 5.1:-49222037 | None:intergenic |
ATCAAGTTCCTAACAATTAC+TGG | 0.290004 | 5.1:+49221060 | MS.gene010194:CDS |
CATATCAAAGCATTTGGATT+TGG | 0.298690 | 5.1:+49222007 | MS.gene010194:CDS |
AGTGAATCACCAAATCAAAA+TGG | 0.332679 | 5.1:+49221020 | MS.gene010194:CDS |
AAGGATCATATCAAAGCATT+TGG | 0.345398 | 5.1:+49222001 | MS.gene010194:CDS |
GGTGATTCACTTGAATTGTT+AGG | 0.354362 | 5.1:-49221008 | None:intergenic |
CAAACATAAGAGGTCACTTA+AGG | 0.365934 | 5.1:+49221982 | MS.gene010194:CDS |
GTTGGTATCCAGTAATTGTT+AGG | 0.378277 | 5.1:-49221068 | None:intergenic |
TCCTTCAATGGCTTAGCTCT+TGG | 0.384210 | 5.1:-49221806 | None:intergenic |
CAATCGTTACAACAACCTTC+AGG | 0.392156 | 5.1:+49221151 | MS.gene010194:CDS |
TAATTGTTAGGAACTTGATT+TGG | 0.405327 | 5.1:-49221056 | None:intergenic |
GTTAGGAAGGCCTATTTGTA+AGG | 0.411385 | 5.1:-49220991 | None:intergenic |
GTCACAGTGGCCTTACAAAT+AGG | 0.422585 | 5.1:+49220981 | MS.gene010194:CDS |
CCATGCTATTGTTGTTCAAA+GGG | 0.430924 | 5.1:+49221761 | MS.gene010194:CDS |
GTTCAGATTTCAAACATAAG+AGG | 0.434145 | 5.1:+49221972 | MS.gene010194:CDS |
ACTCAGGAACAGATTCTCAT+TGG | 0.435131 | 5.1:+49221089 | MS.gene010194:CDS |
ACCATGCTATTGTTGTTCAA+AGG | 0.475949 | 5.1:+49221760 | MS.gene010194:CDS |
CCGAAAATGTGGGAAGCCAT+TGG | 0.478330 | 5.1:+49221886 | MS.gene010194:CDS |
CAATCACCTTTCACTGCCAA+TGG | 0.484406 | 5.1:-49221902 | None:intergenic |
CCTTTGCTAAGTAGCTTCCA+AGG | 0.501084 | 5.1:+49220891 | MS.gene010194:CDS |
GGTCTAACAATGGTCGTGGA+TGG | 0.504798 | 5.1:-49221736 | None:intergenic |
CATTGGCAGTGAAAGGTGAT+TGG | 0.508045 | 5.1:+49221903 | MS.gene010194:CDS |
TCCAAGAGCTAAGCCATTGA+AGG | 0.510873 | 5.1:+49221805 | MS.gene010194:CDS |
ACGTTTACTTGCCGAAAATG+TGG | 0.517882 | 5.1:+49221875 | MS.gene010194:CDS |
ATGAGAATCTGTTCCTGAGT+TGG | 0.522747 | 5.1:-49221086 | None:intergenic |
AGTGTCCTGAAATCCTTCAA+TGG | 0.536755 | 5.1:-49221818 | None:intergenic |
GTTCTTGTGAAGTTGAACCT+TGG | 0.544548 | 5.1:-49220908 | None:intergenic |
GTCTAACAATGGTCGTGGAT+GGG | 0.548133 | 5.1:-49221735 | None:intergenic |
GGTAGGTCTAACAATGGTCG+TGG | 0.562164 | 5.1:-49221740 | None:intergenic |
CGTTTACTTGCCGAAAATGT+GGG | 0.564239 | 5.1:+49221876 | MS.gene010194:CDS |
ATTCACTTGAATTGTTAGGA+AGG | 0.564830 | 5.1:-49221004 | None:intergenic |
TTGAACAACAATAGCATGGT+AGG | 0.577831 | 5.1:-49221757 | None:intergenic |
AAGCTACTTAGCAAAGGTAG+AGG | 0.580419 | 5.1:-49220885 | None:intergenic |
AAGCGTTGGCTTTGTATCTG+TGG | 0.585573 | 5.1:+49221950 | MS.gene010194:CDS |
TTTGGTGATAGATGCATATG+TGG | 0.589947 | 5.1:+49221666 | MS.gene010194:intron |
CAATTACTGGATACCAACTC+AGG | 0.612200 | 5.1:+49221073 | MS.gene010194:CDS |
CCTTGGAAGCTACTTAGCAA+AGG | 0.615377 | 5.1:-49220891 | None:intergenic |
CACTGCAGACACATTACAAG+AGG | 0.618120 | 5.1:+49221837 | MS.gene010194:CDS |
ACACATTACAAGAGGAAGCA+TGG | 0.621285 | 5.1:+49221845 | MS.gene010194:CDS |
CCCTTTGAACAACAATAGCA+TGG | 0.627956 | 5.1:-49221761 | None:intergenic |
TTGGTGATAGATGCATATGT+GGG | 0.631361 | 5.1:+49221667 | MS.gene010194:intron |
GGGAAGCCATTGGCAGTGAA+AGG | 0.634540 | 5.1:+49221896 | MS.gene010194:CDS |
ATCATGTTTCAATCAAGCTG+AGG | 0.648432 | 5.1:+49220956 | MS.gene010194:CDS |
CATGGTTCACAGTATCGAAG+AGG | 0.674513 | 5.1:+49221692 | MS.gene010194:CDS |
TAGCATGGTAGGTCTAACAA+TGG | 0.702153 | 5.1:-49221746 | None:intergenic |
TGGTGATAGATGCATATGTG+GGG | 0.723679 | 5.1:+49221668 | MS.gene010194:intron |
TCAAGCTGAGGATGTCACAG+TGG | 0.732110 | 5.1:+49220968 | MS.gene010194:CDS |
GGTGATAGATGCATATGTGG+GGG | 0.769392 | 5.1:+49221669 | MS.gene010194:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACCAAATTGAAAATATAATC+AGG | - | chr5.1:49221652-49221671 | None:intergenic | 20.0% |
!! | CCAAATTGAAAATATAATCA+GGG | - | chr5.1:49221651-49221670 | None:intergenic | 20.0% |
!! | TAATCTCTCCAATAAAAAAA+AGG | + | chr5.1:49221281-49221300 | MS.gene010194:intron | 20.0% |
!!! | AGCATTTACCTTTTTTTTAT+TGG | - | chr5.1:49221292-49221311 | None:intergenic | 20.0% |
!!! | TAAAATATTGATTGCCATAA+GGG | - | chr5.1:49221551-49221570 | None:intergenic | 20.0% |
!!! | TTAAAATATTGATTGCCATA+AGG | - | chr5.1:49221552-49221571 | None:intergenic | 20.0% |
!!! | TTTACAAATCCATTTTGATT+TGG | - | chr5.1:49221032-49221051 | None:intergenic | 20.0% |
! | AAACTTTAATTGAAGTTCCT+AGG | + | chr5.1:49221406-49221425 | MS.gene010194:intron | 25.0% |
! | AACTTTAATTGAAGTTCCTA+GGG | + | chr5.1:49221407-49221426 | MS.gene010194:intron | 25.0% |
! | AGTGATTCTCTATAATATCA+AGG | + | chr5.1:49221507-49221526 | MS.gene010194:intron | 25.0% |
! | TAATTGTTAGGAACTTGATT+TGG | - | chr5.1:49221059-49221078 | None:intergenic | 25.0% |
!! | CCCTGATTATATTTTCAATT+TGG | + | chr5.1:49221648-49221667 | MS.gene010194:intron | 25.0% |
!! | GATTTATGACTTTCATTTTG+TGG | - | chr5.1:49220939-49220958 | None:intergenic | 25.0% |
!!! | GCAATCAATATTTTAAACCT+TGG | + | chr5.1:49221556-49221575 | MS.gene010194:intron | 25.0% |
AAACCTAGATTTCTGATCTT+AGG | + | chr5.1:49221611-49221630 | MS.gene010194:intron | 30.0% | |
AATCCTAAGATCAGAAATCT+AGG | - | chr5.1:49221617-49221636 | None:intergenic | 30.0% | |
AGTGAATCACCAAATCAAAA+TGG | + | chr5.1:49221020-49221039 | MS.gene010194:CDS | 30.0% | |
ATCAAGTTCCTAACAATTAC+TGG | + | chr5.1:49221060-49221079 | MS.gene010194:CDS | 30.0% | |
ATTCACTTGAATTGTTAGGA+AGG | - | chr5.1:49221007-49221026 | None:intergenic | 30.0% | |
GTTCAGATTTCAAACATAAG+AGG | + | chr5.1:49221972-49221991 | MS.gene010194:CDS | 30.0% | |
TAATTTATTTGCGACTACCA+AGG | - | chr5.1:49221576-49221595 | None:intergenic | 30.0% | |
! | AAGGATCATATCAAAGCATT+TGG | + | chr5.1:49222001-49222020 | MS.gene010194:CDS | 30.0% |
! | CATATCAAAGCATTTGGATT+TGG | + | chr5.1:49222007-49222026 | MS.gene010194:CDS | 30.0% |
! | TGACTTTCATTTTGTGGTAA+AGG | - | chr5.1:49220933-49220952 | None:intergenic | 30.0% |
! | TGTAACGATTGAAAGTTTTG+AGG | - | chr5.1:49221142-49221161 | None:intergenic | 30.0% |
AAGAAAACTACTACACCTGA+AGG | - | chr5.1:49221169-49221188 | None:intergenic | 35.0% | |
AGAACTCATGAGAAAAACTG+TGG | + | chr5.1:49221926-49221945 | MS.gene010194:CDS | 35.0% | |
ATCATGTTTCAATCAAGCTG+AGG | + | chr5.1:49220956-49220975 | MS.gene010194:CDS | 35.0% | |
CAAACATAAGAGGTCACTTA+AGG | + | chr5.1:49221982-49222001 | MS.gene010194:CDS | 35.0% | |
CACCAGATGAAGAAGAAAAA+GGG | - | chr5.1:49222039-49222058 | None:intergenic | 35.0% | |
CATACAATCCTTGTCAAATC+TGG | + | chr5.1:49221377-49221396 | MS.gene010194:intron | 35.0% | |
GGTGATTCACTTGAATTGTT+AGG | - | chr5.1:49221011-49221030 | None:intergenic | 35.0% | |
GTTGGTATCCAGTAATTGTT+AGG | - | chr5.1:49221071-49221090 | None:intergenic | 35.0% | |
TTCATTGACCAGATTTGACA+AGG | - | chr5.1:49221388-49221407 | None:intergenic | 35.0% | |
TTGAACAACAATAGCATGGT+AGG | - | chr5.1:49221760-49221779 | None:intergenic | 35.0% | |
TTGTTATGTCCTAAAACCCT+AGG | - | chr5.1:49221426-49221445 | None:intergenic | 35.0% | |
! | ACCATGCTATTGTTGTTCAA+AGG | + | chr5.1:49221760-49221779 | MS.gene010194:CDS | 35.0% |
! | ATTGAAGTTCCTAGGGTTTT+AGG | + | chr5.1:49221414-49221433 | MS.gene010194:intron | 35.0% |
! | CCATGCTATTGTTGTTCAAA+GGG | + | chr5.1:49221761-49221780 | MS.gene010194:CDS | 35.0% |
! | CTTTTTCTTCTTCATCTGGT+GGG | + | chr5.1:49222038-49222057 | MS.gene010194:CDS | 35.0% |
! | TTGGTGATAGATGCATATGT+GGG | + | chr5.1:49221667-49221686 | MS.gene010194:intron | 35.0% |
! | TTTGGTGATAGATGCATATG+TGG | + | chr5.1:49221666-49221685 | MS.gene010194:intron | 35.0% |
AAGCTACTTAGCAAAGGTAG+AGG | - | chr5.1:49220888-49220907 | None:intergenic | 40.0% | |
ACACATTACAAGAGGAAGCA+TGG | + | chr5.1:49221845-49221864 | MS.gene010194:CDS | 40.0% | |
ACGTTTACTTGCCGAAAATG+TGG | + | chr5.1:49221875-49221894 | MS.gene010194:CDS | 40.0% | |
ACTCAGGAACAGATTCTCAT+TGG | + | chr5.1:49221089-49221108 | MS.gene010194:CDS | 40.0% | |
AGTGTCCTGAAATCCTTCAA+TGG | - | chr5.1:49221821-49221840 | None:intergenic | 40.0% | |
ATGAGAATCTGTTCCTGAGT+TGG | - | chr5.1:49221089-49221108 | None:intergenic | 40.0% | |
CAATCGTTACAACAACCTTC+AGG | + | chr5.1:49221151-49221170 | MS.gene010194:CDS | 40.0% | |
CAATTACTGGATACCAACTC+AGG | + | chr5.1:49221073-49221092 | MS.gene010194:CDS | 40.0% | |
CCACCAGATGAAGAAGAAAA+AGG | - | chr5.1:49222040-49222059 | None:intergenic | 40.0% | |
CCCTTTGAACAACAATAGCA+TGG | - | chr5.1:49221764-49221783 | None:intergenic | 40.0% | |
CGTTTACTTGCCGAAAATGT+GGG | + | chr5.1:49221876-49221895 | MS.gene010194:CDS | 40.0% | |
CTAAGCCATTGAAGGATTTC+AGG | + | chr5.1:49221813-49221832 | MS.gene010194:CDS | 40.0% | |
GTTAGGAAGGCCTATTTGTA+AGG | - | chr5.1:49220994-49221013 | None:intergenic | 40.0% | |
GTTCTTGTGAAGTTGAACCT+TGG | - | chr5.1:49220911-49220930 | None:intergenic | 40.0% | |
TAGCATGGTAGGTCTAACAA+TGG | - | chr5.1:49221749-49221768 | None:intergenic | 40.0% | |
TGGTGATAGATGCATATGTG+GGG | + | chr5.1:49221668-49221687 | MS.gene010194:intron | 40.0% | |
! | AGCCCTTTTTCTTCTTCATC+TGG | + | chr5.1:49222034-49222053 | MS.gene010194:CDS | 40.0% |
! | CCTTTTTCTTCTTCATCTGG+TGG | + | chr5.1:49222037-49222056 | MS.gene010194:CDS | 40.0% |
!!! | TGAAAGTTTTGAGGCAGACT+GGG | - | chr5.1:49221133-49221152 | None:intergenic | 40.0% |
!!! | TTGAAAGTTTTGAGGCAGAC+TGG | - | chr5.1:49221134-49221153 | None:intergenic | 40.0% |
AGAAAAACTGTGGCAAGCGT+TGG | + | chr5.1:49221936-49221955 | MS.gene010194:CDS | 45.0% | |
ATTGATTGCCATAAGGGTCG+TGG | - | chr5.1:49221545-49221564 | None:intergenic | 45.0% | |
CAATCACCTTTCACTGCCAA+TGG | - | chr5.1:49221905-49221924 | None:intergenic | 45.0% | |
CACTGCAGACACATTACAAG+AGG | + | chr5.1:49221837-49221856 | MS.gene010194:CDS | 45.0% | |
CATTGGCAGTGAAAGGTGAT+TGG | + | chr5.1:49221903-49221922 | MS.gene010194:CDS | 45.0% | |
CCTTGGAAGCTACTTAGCAA+AGG | - | chr5.1:49220894-49220913 | None:intergenic | 45.0% | |
CCTTTGCTAAGTAGCTTCCA+AGG | + | chr5.1:49220891-49220910 | MS.gene010194:CDS | 45.0% | |
GAACGCAATCGAGGTTTCAT+CGG | + | chr5.1:49221473-49221492 | MS.gene010194:intron | 45.0% | |
GGTGATAGATGCATATGTGG+GGG | + | chr5.1:49221669-49221688 | MS.gene010194:intron | 45.0% | |
GTCTAACAATGGTCGTGGAT+GGG | - | chr5.1:49221738-49221757 | None:intergenic | 45.0% | |
TCCAAGAGCTAAGCCATTGA+AGG | + | chr5.1:49221805-49221824 | MS.gene010194:CDS | 45.0% | |
! | CATGGTTCACAGTATCGAAG+AGG | + | chr5.1:49221692-49221711 | MS.gene010194:CDS | 45.0% |
! | CCAATGGCTTCCCACATTTT+CGG | - | chr5.1:49221889-49221908 | None:intergenic | 45.0% |
! | GTCACAGTGGCCTTACAAAT+AGG | + | chr5.1:49220981-49221000 | MS.gene010194:CDS | 45.0% |
! | TCCTTCAATGGCTTAGCTCT+TGG | - | chr5.1:49221809-49221828 | None:intergenic | 45.0% |
!! | AAGCGTTGGCTTTGTATCTG+TGG | + | chr5.1:49221950-49221969 | MS.gene010194:CDS | 45.0% |
!! | TGGGTTCTTTTTAGCGAGTC+TGG | - | chr5.1:49221719-49221738 | None:intergenic | 45.0% |
ATTGCCATAAGGGTCGTGGT+AGG | - | chr5.1:49221541-49221560 | None:intergenic | 50.0% | |
CCGAAAATGTGGGAAGCCAT+TGG | + | chr5.1:49221886-49221905 | MS.gene010194:CDS | 50.0% | |
GGTAGGTCTAACAATGGTCG+TGG | - | chr5.1:49221743-49221762 | None:intergenic | 50.0% | |
GGTCTAACAATGGTCGTGGA+TGG | - | chr5.1:49221739-49221758 | None:intergenic | 50.0% | |
TAGATGCATATGTGGGGGCA+TGG | + | chr5.1:49221674-49221693 | MS.gene010194:intron | 50.0% | |
TCAAGCTGAGGATGTCACAG+TGG | + | chr5.1:49220968-49220987 | MS.gene010194:CDS | 50.0% | |
TGATCCTACCACGACCCTTA+TGG | + | chr5.1:49221534-49221553 | MS.gene010194:intron | 50.0% | |
TTGCAACACGAACGCAATCG+AGG | + | chr5.1:49221464-49221483 | MS.gene010194:intron | 50.0% | |
GGGAAGCCATTGGCAGTGAA+AGG | + | chr5.1:49221896-49221915 | MS.gene010194:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 49220864 | 49222066 | 49220864 | ID=MS.gene010194 |
chr5.1 | mRNA | 49220864 | 49222066 | 49220864 | ID=MS.gene010194.t1;Parent=MS.gene010194 |
chr5.1 | exon | 49220864 | 49221172 | 49220864 | ID=MS.gene010194.t1.exon1;Parent=MS.gene010194.t1 |
chr5.1 | CDS | 49220864 | 49221172 | 49220864 | ID=cds.MS.gene010194.t1;Parent=MS.gene010194.t1 |
chr5.1 | exon | 49221677 | 49222066 | 49221677 | ID=MS.gene010194.t1.exon2;Parent=MS.gene010194.t1 |
chr5.1 | CDS | 49221677 | 49222066 | 49221677 | ID=cds.MS.gene010194.t1;Parent=MS.gene010194.t1 |
Gene Sequence |
Protein sequence |