AlfalfaGEDB | MS.gene010286

M. sativa cultivar XinJiangDaYe / MS.gene010286

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0110165 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02362.24 PF06507.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene010286.t1	XP_003614915.2	92.2	529	39	2	1	528	1	528	3.30E-285	990.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene010286.t1	Q84WU6	38.7	569	295	12	1	527	1	557	2.7e-97	357.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene010286.t1	G7K951	92.2	529	39	2	1	528	1	528	2.4e-285	990.3

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene010286.t1	TF	B3-ARF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene010286.t1	MTR_5g061220	92.250	529	39	2	1	528	1	528	0.0	1005
MS.gene010286.t1	MTR_1g058210	53.920	523	163	8	8	526	1	449	3.49e-177	507
MS.gene010286.t1	MTR_2g024430	49.817	546	211	14	6	526	7	514	4.97e-158	460
MS.gene010286.t1	MTR_5g040880	49.360	547	209	11	14	528	6	516	2.96e-156	456
MS.gene010286.t1	MTR_5g082140	48.276	522	188	11	14	522	7	459	5.21e-150	437
MS.gene010286.t1	MTR_3g073420	45.811	561	243	16	13	527	13	558	2.61e-144	428
MS.gene010286.t1	MTR_5g060630	47.339	545	188	13	8	480	1	518	1.88e-141	418
MS.gene010286.t1	MTR_5g460740	47.339	545	188	13	8	480	1	518	1.88e-141	418
MS.gene010286.t1	MTR_2g006270	47.002	517	189	13	15	523	9	448	6.81e-133	394
MS.gene010286.t1	MTR_5g060780	53.283	396	137	11	8	392	1	359	1.65e-128	380

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene010286.t1	AT1G77850	39.199	574	285	13	1	527	1	557	4.39e-123	373
MS.gene010286.t1	AT1G77850	39.199	574	285	13	1	527	1	557	6.00e-123	373
MS.gene010286.t1	AT4G30080	39.885	524	261	17	19	504	19	526	1.07e-95	305
MS.gene010286.t1	AT2G28350	39.655	464	207	13	19	432	10	450	6.33e-89	287
MS.gene010286.t1	AT2G28350	40.000	465	204	14	19	432	10	450	9.82e-89	287
MS.gene010286.t1	AT2G46530	36.565	361	194	8	18	370	20	353	2.58e-65	223
MS.gene010286.t1	AT2G46530	36.592	358	192	8	18	367	41	371	5.56e-65	223
MS.gene010286.t1	AT3G61830	34.574	376	201	9	15	382	21	359	4.29e-62	214
MS.gene010286.t1	AT2G33860	34.865	370	185	8	19	367	54	388	5.90e-62	214
MS.gene010286.t1	AT5G37020	33.168	404	218	10	16	400	19	389	9.61e-61	214

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Find 148 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTGGCAGACATGTGC+CGG	0.515291	5.4:-47759167	MS.gene010286:CDS
AAAGGCAGTGAATAATAGGA+AGG	0.580552	5.4:-47758544	MS.gene010286:CDS
AAAGTTTATTACTTCCCACA+AGG	0.663461	5.4:-47759113	MS.gene010286:CDS
AAATCTGATTCTAATAACGG+CGG	0.706742	5.4:-47758855	MS.gene010286:CDS
AAATTGCACCAATTAGCCCT+AGG	0.571867	5.4:+47758378	None:intergenic
AACAATAACACAAAAGGAGT+TGG	0.535208	5.4:-47756357	MS.gene010286:CDS
AACACAAAAGGAGTTGGTTC+TGG	0.362758	5.4:-47756351	MS.gene010286:CDS
AACCAAACATTGTTGAATTG+CGG	0.536631	5.4:-47756573	MS.gene010286:CDS
AACCGCAATTCAACAATGTT+TGG	0.340223	5.4:+47756571	None:intergenic
AACTCTATCATAGGAATGAA+GGG	0.541293	5.4:+47756612	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTTTATTACTTCCCACA+AGG	-	chr5.4:47756356-47756375	MS.gene010286:CDS	30.0%
AAATATTAGGGTTAGGTGAT+AGG	-	chr5.4:47758038-47758057	MS.gene010286:intron	30.0%
AAATCTGATTCTAATAACGG+CGG	-	chr5.4:47756614-47756633	MS.gene010286:CDS	30.0%
AACAATAACACAAAAGGAGT+TGG	-	chr5.4:47759112-47759131	MS.gene010286:CDS	30.0%
AACCAAACATTGTTGAATTG+CGG	-	chr5.4:47758896-47758915	MS.gene010286:CDS	30.0%
AACTCTATCATAGGAATGAA+GGG	+	chr5.4:47758860-47758879	None:intergenic	30.0%
AATCAAAGGCAGTGAATAAT+AGG	-	chr5.4:47756921-47756940	MS.gene010286:intron	30.0%
ACTCACAACAATAACACAAA+AGG	-	chr5.4:47759106-47759125	MS.gene010286:CDS	30.0%
AGACATGATTACCAAAATAC+AGG	-	chr5.4:47757676-47757695	MS.gene010286:intron	30.0%
CATGATCATTTATCTCTATC+AGG	-	chr5.4:47758950-47758969	MS.gene010286:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	47756248	47759243	47756248	ID=MS.gene010286
chr5.4	mRNA	47756248	47759243	47756248	ID=MS.gene010286.t1;Parent=MS.gene010286
chr5.4	exon	47758206	47759243	47758206	ID=MS.gene010286.t1.exon1;Parent=MS.gene010286.t1
chr5.4	CDS	47758206	47759243	47758206	ID=cds.MS.gene010286.t1;Parent=MS.gene010286.t1
chr5.4	exon	47756248	47756796	47756248	ID=MS.gene010286.t1.exon2;Parent=MS.gene010286.t1
chr5.4	CDS	47756248	47756796	47756248	ID=cds.MS.gene010286.t1;Parent=MS.gene010286.t1

Gene Sequence

>MS.gene010286

ATGTCTTCCCCACCGGCCACCATGTCTGTCCCTCCGGCACGCCGCGTTAAATCCAAAATCTGGCAGACATGTGCCGGTCCATCGGTGAACGTTCCAAAGGTACGTTCTAAAGTTTATTACTTCCCACAAGGTCACTTGGAACATGCCTGCCCTTCCCCTAACCCTCAAACAATCACTGTTGTTGATGGTTACCGTCCTTCTTTTCCTTGTATCATCACGGCCGTTGATCTCCTAGCCGATCCTCACACCGATGAGGTCTTCGCCAAATTGCTACTCAGTCCGGTAACTGAAGGACAAGAACTTCCTGAGGTTGTTGATAAAGAAGAAGACGGTGATAAGGTTGTTTCCTTCGTAAAGACTCTTACAAAATCTGATTCTAATAACGGCGGTGGATTCTCTGTACCTCGCCTTTGTGCTGACTTGATTTTCCCTAAGCTTGACTTAAATTCTCCTTTTCCGTCTCAGGAACTCTCCGTTACTGATGTTCATGACGGAGTTTGGAAGTTTGCTCATGTCTATCGAGGGAGACCCAAAAGACACCTTTTTACTACTGGTTGGACTCCGTTTGTGAACACGAAAAAACTCGTTGCTGGTGATTCTATTGTTTTCATGAAAAACACTGCCGGAGATATAGTTGTTGGAATCCGCAGAAACATGAAGTTTACTGCAGCTGAATCAAAGGCAGTGAATAATAGGAAGGGGGATGAGGGTAAAGAGAATGGTTTGGAGGTCAAAGGAGAGGGTTTTTCTCGAGGCGGGAGAAGAGGAATACTAACCGTGAAGGCGGTTATTGACGCAGTGGAGTTGGCGGAAAAGAATATGGCATTTGAAGTTATATATTACCCTAGGGCTAATTGGTGCAATTTTGTAGTAGATGCAAATGTTGTGGATGATGCTATGAAGATTGGTTGGGCATCTGGAATGAGAGTGAAGCTTCCTTTGAAGATTGATGAATCTTCAAATTCGAAGATGACATTTTTTCAGCCTCAAGGAACAATCTCTAATGTGTCCAGTGTCCCTAATTGGCGCATGCTTCAGGTGCTCTTCTTTTTTGGTCTTGTTGTAGTTTTATTTTATTTTTTGAATCAAGGGCTAATTATATTTGACTGCATAATGTTATAAATATTATTGTCGAAGAAGATTAGGCAATGATTCATTTAGACGTTATAGTCACACAATTCGCATTTCGCGTTGTTACGGGTTTGCGGTACACGACATGAGAAGAATTCGATGCATACGGAGGTATAAACCTTGCATCGATTCATAGTATTGTTACTACCTAATTAAGTATACTAAACTATCTTAATATTACAAAAAATTAGAAGGATTATATCGACAAGCTACAACAAATTAGCGCCCACTTCCGAAAACCTTTTTTTACAGCTCAACCAACACAATCCTTGCTGAAAACATTATTCAACGATTATGAGACATGATTACCAAAATACAGTTAGGAAAAATCACAACAGCTTCAATGCTCACAATCACAACAATAGCTAGCTGTGAAAACATTATTCAACGATTATGAGACATGATTACCAAAATACAGGAAAAATCACAACAGCTTCAATGCTCACAATAACAATAGCTAGCTGAATAATTATAGTAGTGTCATCTTTTTTCTCTCCACAATAGCAGCAGCAACAGTGGTATATATGTTTCAGCAAGAGGAAGAGTGAAGATATAGATAACTTGGAATGCAAACATAGAGTTACATTCCCTGAGAGCCTTGATCATTGTTGCTCCAAGTTTAAAGAGTCATGTTTTATCCCTTGATCAATTTAGTATACAAATATTAGGGTTAGGTGATAGGAGTGTAGGCTAGTATACTATCTATAGCTTTGTTGTGCCCTATAGGATAAGTTATATATAAAATTCTAATATTATTTGACCAACTAAGTTAGTCGTTAATTTACTGTTTTTTGGTGTTGTCATTATTTACATTCAACACTAATAAAAAGAAAATATTAGAACATCAATTTATATACAGCAGAGCTAATTTTAAGAGAATACTTTAGTTTGATTAGAAATACATTTGAAGTAATTTATAGTTGATACCAAAATCAATCCATAATTATGGATCAACTGCAACACAATTTGTTCTTGCACTTGTATCATTTGTGATCATTAGATGTGAAACCATGCACCCTTCTTGCTCCTCATATGATTGATTGATTGATGAAATGCGAGAATAAAAGAGTGACAAGTGTTTTCGGGCATATAAATAATGAAGAAGCTTCAGGTATCTTATGGAAAAGTATTAGTTATTTAGGTTACCATATTTTTATAATAAAATGCATTTGCTCTTATTCCTAAGGAGAATCTATATTTTACTCACATGTTAGTATTTGTTAAGAAACATTTGATGTGCATATACATACTATAACTTATCGTATATTTTAAATGACTGATATTGGATTCTTACCATTTTTATCTCTTTATCATAGGTTAACTGGGATGAACTTGAAATCTTGCAAAATCAAAACCGCATCAATCCCTGGCAAGTTGAACTTATTTCCCGCAATCCTGCAGTGCATCTACCATTTCTCTCAACAAAAAAGCCTAGACTAGTTCAGGATTCTACCTTGTTTAGTGATAACAAGGGTGATCCCTTCATTCCTATGATAGAGTTCCCTAAGAGATCTTTGAACCAAACATTGTTGAATTGCGGTTATTTTCCAGCAGGCATGCAGGGAGCCAGGCATGATCATTTATCTCTATCAGGTTTTTCCAACTCTTTGAATGATAATAGTTATGGTTTCTTTGTGAACAATCTAAACATTGACAGTCCCACATCTAACGACTTGTCGCCAAATAACCTTAGTAGTTTGAACATATTCGGGACAGATTTTGTTGAGACTCACAACAATAACACAAAAGGAGTTGGTTCTGGTTCAATTAAGTTATTTGGTAAGATCATTCAGACCGTTGAAAGTGATGTCCATGATTCTGGTTCCAAGGGAGAAGATTCCTCTAAGCGATCCAATGAAATTTGA

Protein sequence

>MS.gene010286.t1

MSSPPATMSVPPARRVKSKIWQTCAGPSVNVPKVRSKVYYFPQGHLEHACPSPNPQTITVVDGYRPSFPCIITAVDLLADPHTDEVFAKLLLSPVTEGQELPEVVDKEEDGDKVVSFVKTLTKSDSNNGGGFSVPRLCADLIFPKLDLNSPFPSQELSVTDVHDGVWKFAHVYRGRPKRHLFTTGWTPFVNTKKLVAGDSIVFMKNTAGDIVVGIRRNMKFTAAESKAVNNRKGDEGKENGLEVKGEGFSRGGRRGILTVKAVIDAVELAEKNMAFEVIYYPRANWCNFVVDANVVDDAMKIGWASGMRVKLPLKIDESSNSKMTFFQPQGTISNVSSVPNWRMLQVNWDELEILQNQNRINPWQVELISRNPAVHLPFLSTKKPRLVQDSTLFSDNKGDPFIPMIEFPKRSLNQTLLNCGYFPAGMQGARHDHLSLSGFSNSLNDNSYGFFVNNLNIDSPTSNDLSPNNLSSLNIFGTDFVETHNNNTKGVGSGSIKLFGKIIQTVESDVHDSGSKGEDSSKRSNEI