Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010292.t1 | XP_003614899.2 | 66.1 | 177 | 15 | 1 | 6 | 137 | 40 | 216 | 6.50E-51 | 210.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010292.t1 | G7K935 | 66.1 | 177 | 15 | 1 | 6 | 137 | 124 | 300 | 4.7e-51 | 210.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene010292.t1 | TF | bZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010292.t1 | MTR_5g060990 | 66.102 | 177 | 15 | 1 | 6 | 137 | 124 | 300 | 4.01e-67 | 206 |
| MS.gene010292.t1 | MTR_7g088090 | 36.154 | 130 | 51 | 3 | 55 | 158 | 197 | 320 | 9.46e-14 | 67.4 |
| MS.gene010292.t1 | MTR_8g043960 | 39.394 | 99 | 34 | 2 | 86 | 158 | 215 | 313 | 5.62e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010292.t1 | AT3G56850 | 43.678 | 87 | 23 | 1 | 98 | 158 | 211 | 297 | 7.06e-11 | 59.3 |
Find 38 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTGTTGCAATTGATAATT+TGG | 0.140236 | 5.4:-47619446 | None:intergenic |
| GAAACTCAAGTTCCATTTAT+TGG | 0.183062 | 5.4:+47619881 | MS.gene010292:CDS |
| TTTGGTTCAACTCCAATAAA+TGG | 0.213001 | 5.4:-47619893 | None:intergenic |
| GAGAACAAACTTATGGAAAT+TGG | 0.227423 | 5.4:+47620103 | MS.gene010292:CDS |
| TATTGGAGTTGAACCAAATT+TGG | 0.228912 | 5.4:+47619898 | MS.gene010292:CDS |
| TGTGAAGCCATGACCAAATT+TGG | 0.273930 | 5.4:-47619911 | None:intergenic |
| CATGCTAAGGCTATTAATAT+TGG | 0.286901 | 5.4:+47619827 | MS.gene010292:intron |
| CTGAGCTAACACGCCGTAAT+TGG | 0.291240 | 5.4:-47623175 | None:intergenic |
| AGTTTATGAGAACAAACTTA+TGG | 0.310071 | 5.4:+47620096 | MS.gene010292:CDS |
| CAAGAAAATGTTCATGCTAT+TGG | 0.325704 | 5.4:+47619854 | MS.gene010292:CDS |
| GAATTTGCAACACCGAAATC+TGG | 0.372759 | 5.4:-47620073 | None:intergenic |
| ATAGGGTTGTGTCCAGATTT+CGG | 0.384705 | 5.4:+47620061 | MS.gene010292:intron |
| GGTGCTGGTGGAAGCGGCGT+TGG | 0.410177 | 5.4:+47620193 | MS.gene010292:CDS |
| AAATTATCAATTGCAACAAC+TGG | 0.421092 | 5.4:+47619448 | MS.gene010292:CDS |
| GAGATCAAGGGCAAAGAAAC+AGG | 0.423260 | 5.4:+47620303 | MS.gene010292:CDS |
| GCGAATCTGCTGCGAGATCA+AGG | 0.428490 | 5.4:+47620290 | MS.gene010292:CDS |
| TCACTCCAACATACCAATTA+CGG | 0.443876 | 5.4:+47623162 | MS.gene010292:CDS |
| AAGGGAGGTGCTGGTGGAAG+CGG | 0.452209 | 5.4:+47620187 | MS.gene010292:CDS |
| TTGATCTCGCAGCAGATTCG+CGG | 0.487789 | 5.4:-47620288 | None:intergenic |
| ATCTACATGTTCAGATTCAA+AGG | 0.498171 | 5.4:+47620168 | MS.gene010292:CDS |
| ACTTATGGAAATTGGTTACT+CGG | 0.508668 | 5.4:+47620111 | MS.gene010292:CDS |
| TCAGATTCAAAGGGAGGTGC+TGG | 0.512549 | 5.4:+47620178 | MS.gene010292:CDS |
| CAAGTATTCAGATGAGATGA+TGG | 0.513206 | 5.4:+47620225 | MS.gene010292:CDS |
| CTGGTGGAAGCGGCGTTGGA+AGG | 0.516752 | 5.4:+47620197 | MS.gene010292:CDS |
| GTTACTCGGAAATACCAATC+GGG | 0.521173 | 5.4:+47620125 | MS.gene010292:CDS |
| GGTTACTCGGAAATACCAAT+CGG | 0.532975 | 5.4:+47620124 | MS.gene010292:CDS |
| AGTTGAACCAAATTTGGTCA+TGG | 0.554386 | 5.4:+47619904 | MS.gene010292:CDS |
| TGTGTTGTCGTTGCCCCGAT+TGG | 0.555305 | 5.4:-47620139 | None:intergenic |
| ACACGCCGTAATTGGTATGT+TGG | 0.562876 | 5.4:-47623167 | None:intergenic |
| GATTCAAAGGGAGGTGCTGG+TGG | 0.564466 | 5.4:+47620181 | MS.gene010292:CDS |
| TGATGGAAAAGACTATTGAG+AGG | 0.567476 | 5.4:+47620242 | MS.gene010292:CDS |
| CGAATCTGCTGCGAGATCAA+GGG | 0.577446 | 5.4:+47620291 | MS.gene010292:CDS |
| TGAGAGGAGGCAGAAGCGAA+TGG | 0.590383 | 5.4:+47620258 | MS.gene010292:CDS |
| TCTACATGTTCAGATTCAAA+GGG | 0.597077 | 5.4:+47620169 | MS.gene010292:CDS |
| GTCATGGCTTCACAGCCAGA+AGG | 0.598955 | 5.4:+47619920 | MS.gene010292:CDS |
| ACATGTTCAGATTCAAAGGG+AGG | 0.661738 | 5.4:+47620172 | MS.gene010292:CDS |
| TGGAAAAGACTATTGAGAGG+AGG | 0.667614 | 5.4:+47620245 | MS.gene010292:CDS |
| TTACTCGGAAATACCAATCG+GGG | 0.704212 | 5.4:+47620126 | MS.gene010292:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAGAAAAAGAAAAAAA+AGG | - | chr5.4:47622726-47622745 | None:intergenic | 10.0% |
| !! | ATATTTATATTACAATTTGA+AGG | + | chr5.4:47622648-47622667 | MS.gene010292:intron | 10.0% |
| !! | GTAATATAAATATAAATTTG+TGG | - | chr5.4:47622641-47622660 | None:intergenic | 10.0% |
| !!! | TCTTTGAAAAAAATTATTTT+AGG | + | chr5.4:47622478-47622497 | MS.gene010292:intron | 10.0% |
| !!! | TTTAACAAATCAATTTTATT+AGG | + | chr5.4:47622385-47622404 | MS.gene010292:intron | 10.0% |
| !! | ATTAATTCTTCATTTCTATA+TGG | + | chr5.4:47619626-47619645 | MS.gene010292:intron | 15.0% |
| !! | ATTTCCCTAAAAAAAATTAT+TGG | + | chr5.4:47622410-47622429 | MS.gene010292:intron | 15.0% |
| !! | TTATTGTAAAAAAATTGTGA+TGG | + | chr5.4:47622604-47622623 | MS.gene010292:intron | 15.0% |
| !! | TTTCCCTAAAAAAAATTATT+GGG | + | chr5.4:47622411-47622430 | MS.gene010292:intron | 15.0% |
| !!! | AAACCCAATAATTTTTTTTA+GGG | - | chr5.4:47622417-47622436 | None:intergenic | 15.0% |
| !!! | TAAACCCAATAATTTTTTTT+AGG | - | chr5.4:47622418-47622437 | None:intergenic | 15.0% |
| !! | AACAAATAAAACAGAATGTA+TGG | - | chr5.4:47620516-47620535 | None:intergenic | 20.0% |
| !! | AACCAACAAAAAAATGTAAT+TGG | + | chr5.4:47619737-47619756 | MS.gene010292:intron | 20.0% |
| !! | AAGTATCAAATAAAGAAGAA+TGG | - | chr5.4:47620407-47620426 | None:intergenic | 20.0% |
| !! | AATTAAAACACATTTACTTG+TGG | + | chr5.4:47621046-47621065 | MS.gene010292:intron | 20.0% |
| !! | ACCAACAAAAAAATGTAATT+GGG | + | chr5.4:47619738-47619757 | MS.gene010292:intron | 20.0% |
| !! | AGAAATGAAGAATTAATATC+AGG | - | chr5.4:47619623-47619642 | None:intergenic | 20.0% |
| !! | AGCAAATAAAGGTTATAAAA+TGG | - | chr5.4:47622295-47622314 | None:intergenic | 20.0% |
| !! | ATAAATAAGTGATGAATTGT+TGG | + | chr5.4:47623000-47623019 | MS.gene010292:intron | 20.0% |
| !! | CATATTTACAGATAATAGAA+AGG | - | chr5.4:47622451-47622470 | None:intergenic | 20.0% |
| !! | CTCAAGGAATTATATATATA+GGG | + | chr5.4:47620870-47620889 | MS.gene010292:intron | 20.0% |
| !! | GCAAATAAAGGTTATAAAAT+GGG | - | chr5.4:47622294-47622313 | None:intergenic | 20.0% |
| !! | TATTCTCTTATAACAAACAT+AGG | - | chr5.4:47622147-47622166 | None:intergenic | 20.0% |
| !! | TCATTATTATTGATCAAGTT+TGG | + | chr5.4:47621277-47621296 | MS.gene010292:intron | 20.0% |
| !! | TGAAAATATATCTTCTAATG+TGG | + | chr5.4:47623093-47623112 | MS.gene010292:intron | 20.0% |
| !! | TTTATTAATATTGCAGAAAG+TGG | + | chr5.4:47623118-47623137 | MS.gene010292:intron | 20.0% |
| !!! | AATTTGCAACAATCAATTTT+GGG | + | chr5.4:47619776-47619795 | MS.gene010292:intron | 20.0% |
| !!! | ATGAAACTGTTATTTGAATT+TGG | + | chr5.4:47620720-47620739 | MS.gene010292:intron | 20.0% |
| !!! | CAGTTGAAATCATATTTTTT+AGG | - | chr5.4:47619571-47619590 | None:intergenic | 20.0% |
| !!! | CTTCTTTATTTGATACTTTA+AGG | + | chr5.4:47620409-47620428 | MS.gene010292:intron | 20.0% |
| !!! | TATATCTAATGTTTTCTCAT+AGG | + | chr5.4:47620907-47620926 | MS.gene010292:intron | 20.0% |
| !!! | TCAATTTGTCACATATATTT+TGG | + | chr5.4:47620597-47620616 | MS.gene010292:intron | 20.0% |
| !!! | TTGGTATTTGAATTTTCAAT+GGG | + | chr5.4:47621692-47621711 | MS.gene010292:intron | 20.0% |
| !!! | TTTGGTATTTGAATTTTCAA+TGG | + | chr5.4:47621691-47621710 | MS.gene010292:intron | 20.0% |
| ! | AAAAAATGTAATTGGGTCAA+TGG | + | chr5.4:47619745-47619764 | MS.gene010292:intron | 25.0% |
| ! | AAAACTATGTTACAAGGTTA+TGG | - | chr5.4:47621186-47621205 | None:intergenic | 25.0% |
| ! | AAATTATCAATTGCAACAAC+TGG | + | chr5.4:47619448-47619467 | MS.gene010292:CDS | 25.0% |
| ! | AAGAATTAATATCAGGTGTA+GGG | - | chr5.4:47619616-47619635 | None:intergenic | 25.0% |
| ! | ACAAATTGAGATATTGCATT+AGG | - | chr5.4:47620586-47620605 | None:intergenic | 25.0% |
| ! | ACACATAAATAAGTTACAGA+TGG | + | chr5.4:47620433-47620452 | MS.gene010292:intron | 25.0% |
| ! | AGAAAAGATAGAAAATGATG+AGG | - | chr5.4:47622330-47622349 | None:intergenic | 25.0% |
| ! | AGTTTATGAGAACAAACTTA+TGG | + | chr5.4:47620096-47620115 | MS.gene010292:CDS | 25.0% |
| ! | ATATATAATTCCTTGAGGTT+TGG | - | chr5.4:47620867-47620886 | None:intergenic | 25.0% |
| ! | ATCAAAATCAACCGATAATA+GGG | + | chr5.4:47620044-47620063 | MS.gene010292:intron | 25.0% |
| ! | ATTTGAATTTGGATGCATTT+AGG | + | chr5.4:47620731-47620750 | MS.gene010292:intron | 25.0% |
| ! | CATATGATTTATCAAACAGT+TGG | - | chr5.4:47621025-47621044 | None:intergenic | 25.0% |
| ! | CCTATATATATAATTCCTTG+AGG | - | chr5.4:47620872-47620891 | None:intergenic | 25.0% |
| ! | CCTCAAGGAATTATATATAT+AGG | + | chr5.4:47620869-47620888 | MS.gene010292:intron | 25.0% |
| ! | GATGATAACTAAGTTATATG+AGG | - | chr5.4:47621487-47621506 | None:intergenic | 25.0% |
| ! | GTAATTAAGATTTGTCATTG+TGG | + | chr5.4:47620325-47620344 | MS.gene010292:intron | 25.0% |
| ! | GTTGTACACAAACAAATATT+AGG | + | chr5.4:47621243-47621262 | MS.gene010292:intron | 25.0% |
| ! | GTTGTACACAAAGAAATATT+AGG | + | chr5.4:47622073-47622092 | MS.gene010292:intron | 25.0% |
| ! | TATACACAGAATTCATACTA+TGG | - | chr5.4:47619547-47619566 | None:intergenic | 25.0% |
| ! | TATATAATTCCTTGAGGTTT+GGG | - | chr5.4:47620866-47620885 | None:intergenic | 25.0% |
| !! | AGTTGTTGCAATTGATAATT+TGG | - | chr5.4:47619449-47619468 | None:intergenic | 25.0% |
| !! | CAATTTGCAACAATCAATTT+TGG | + | chr5.4:47619775-47619794 | MS.gene010292:intron | 25.0% |
| !! | CATAGGTAGAATCAATTTTT+GGG | - | chr5.4:47622180-47622199 | None:intergenic | 25.0% |
| !! | CTGGTATTTGAATTTTCAAT+GGG | + | chr5.4:47621395-47621414 | MS.gene010292:intron | 25.0% |
| !! | TACCTTTATCAATTTGAGTT+CGG | - | chr5.4:47620486-47620505 | None:intergenic | 25.0% |
| !! | TCATAGGTAGAATCAATTTT+TGG | - | chr5.4:47622181-47622200 | None:intergenic | 25.0% |
| !! | TCTGGTATTTGAATTTTCAA+TGG | + | chr5.4:47621394-47621413 | MS.gene010292:intron | 25.0% |
| !! | TGGTATTTGAATTTTCAATG+GGG | + | chr5.4:47621396-47621415 | MS.gene010292:intron | 25.0% |
| !! | TTAAACCTTTATGTGGTTTT+AGG | + | chr5.4:47622749-47622768 | MS.gene010292:intron | 25.0% |
| !! | TTTTTGCTTAAACCTTTATG+TGG | + | chr5.4:47622742-47622761 | MS.gene010292:intron | 25.0% |
| !!! | ACCCAATTACATTTTTTTGT+TGG | - | chr5.4:47619742-47619761 | None:intergenic | 25.0% |
| AAATCTTTGTGACATGAGAT+TGG | + | chr5.4:47621347-47621366 | MS.gene010292:intron | 30.0% | |
| AACAAATAAATCCGAGTGAA+AGG | - | chr5.4:47622357-47622376 | None:intergenic | 30.0% | |
| AATCTTTGTGACATGAGATT+GGG | + | chr5.4:47621348-47621367 | MS.gene010292:intron | 30.0% | |
| AATTAGAACACACTTACTTG+TGG | + | chr5.4:47621597-47621616 | MS.gene010292:intron | 30.0% | |
| ACTTATGGAAATTGGTTACT+CGG | + | chr5.4:47620111-47620130 | MS.gene010292:CDS | 30.0% | |
| AGGAAAAATTTATTCCCAAG+AGG | + | chr5.4:47622238-47622257 | MS.gene010292:intron | 30.0% | |
| ATACGTGATAAACCAAATTG+AGG | - | chr5.4:47622889-47622908 | None:intergenic | 30.0% | |
| ATATAATTCCTTGAGGTTTG+GGG | - | chr5.4:47620865-47620884 | None:intergenic | 30.0% | |
| ATCTACATGTTCAGATTCAA+AGG | + | chr5.4:47620168-47620187 | MS.gene010292:CDS | 30.0% | |
| ATCTCATGTCACAAAGATTT+CGG | - | chr5.4:47621347-47621366 | None:intergenic | 30.0% | |
| ATTTGCATTTGCAATGGAAT+TGG | - | chr5.4:47619971-47619990 | None:intergenic | 30.0% | |
| CAAGAAAATGTTCATGCTAT+TGG | + | chr5.4:47619854-47619873 | MS.gene010292:CDS | 30.0% | |
| CATCAAAATCAACCGATAAT+AGG | + | chr5.4:47620043-47620062 | MS.gene010292:intron | 30.0% | |
| CATGCTAAGGCTATTAATAT+TGG | + | chr5.4:47619827-47619846 | MS.gene010292:intron | 30.0% | |
| GAAAAGAAGAGAGCAAATAA+AGG | - | chr5.4:47622306-47622325 | None:intergenic | 30.0% | |
| GAAACTCAAGTTCCATTTAT+TGG | + | chr5.4:47619881-47619900 | MS.gene010292:CDS | 30.0% | |
| GAAGAATTAATATCAGGTGT+AGG | - | chr5.4:47619617-47619636 | None:intergenic | 30.0% | |
| GAGAACAAACTTATGGAAAT+TGG | + | chr5.4:47620103-47620122 | MS.gene010292:CDS | 30.0% | |
| GCTAATAGCTAACCTTTAAT+TGG | - | chr5.4:47622926-47622945 | None:intergenic | 30.0% | |
| GGTTATAAAATGGGAATTGT+AGG | - | chr5.4:47622285-47622304 | None:intergenic | 30.0% | |
| GTATAACCTCAAAATTGAAG+AGG | + | chr5.4:47619487-47619506 | MS.gene010292:intron | 30.0% | |
| GTATGAAAGATATGTGTGTT+GGG | + | chr5.4:47620763-47620782 | MS.gene010292:intron | 30.0% | |
| TAAATATTGAGGGTTTAGGA+GGG | + | chr5.4:47621812-47621831 | MS.gene010292:intron | 30.0% | |
| TACCGAACTCAAATTGATAA+AGG | + | chr5.4:47620481-47620500 | MS.gene010292:intron | 30.0% | |
| TACGTGATAAACCAAATTGA+GGG | - | chr5.4:47622888-47622907 | None:intergenic | 30.0% | |
| TATGAAAGATATGTGTGTTG+GGG | + | chr5.4:47620764-47620783 | MS.gene010292:intron | 30.0% | |
| TATGTTACAAGGTTATGGTT+AGG | - | chr5.4:47621181-47621200 | None:intergenic | 30.0% | |
| TATTGGAGTTGAACCAAATT+TGG | + | chr5.4:47619898-47619917 | MS.gene010292:CDS | 30.0% | |
| TCAATGAGTTTATCCAAATG+AGG | + | chr5.4:47622830-47622849 | MS.gene010292:intron | 30.0% | |
| TCCTAAACCCTCAATATTTA+GGG | - | chr5.4:47621812-47621831 | None:intergenic | 30.0% | |
| TCTACATGTTCAGATTCAAA+GGG | + | chr5.4:47620169-47620188 | MS.gene010292:CDS | 30.0% | |
| TCTCTTTGTCATCACTTTAA+CGG | - | chr5.4:47621738-47621757 | None:intergenic | 30.0% | |
| TGGATGAAAACTATGTTACA+AGG | - | chr5.4:47621192-47621211 | None:intergenic | 30.0% | |
| TGGATGATAATTAGGTTATG+AGG | - | chr5.4:47621782-47621801 | None:intergenic | 30.0% | |
| TGTATGAAAGATATGTGTGT+TGG | + | chr5.4:47620762-47620781 | MS.gene010292:intron | 30.0% | |
| TTATCACGTATGAGATTGAT+GGG | + | chr5.4:47622898-47622917 | MS.gene010292:intron | 30.0% | |
| TTTATCACGTATGAGATTGA+TGG | + | chr5.4:47622897-47622916 | MS.gene010292:intron | 30.0% | |
| TTTCTATATGGTAACACTAG+TGG | + | chr5.4:47619638-47619657 | MS.gene010292:intron | 30.0% | |
| TTTCTCCTAAAACCACATAA+AGG | - | chr5.4:47622757-47622776 | None:intergenic | 30.0% | |
| ! | AAGGTTAGCTATTAGCAAAT+TGG | + | chr5.4:47622930-47622949 | MS.gene010292:intron | 30.0% |
| ! | TAATTTTCTTGCACATGCTA+AGG | + | chr5.4:47619814-47619833 | MS.gene010292:intron | 30.0% |
| ! | TTTGGTTCAACTCCAATAAA+TGG | - | chr5.4:47619896-47619915 | None:intergenic | 30.0% |
| !! | AATTTTGGGAGAAACAACTT+TGG | + | chr5.4:47619790-47619809 | MS.gene010292:intron | 30.0% |
| !!! | TTATGTGGTTTTAGGAGAAA+AGG | + | chr5.4:47622757-47622776 | MS.gene010292:intron | 30.0% |
| AAATATTGAGGGTTTAGGAG+GGG | + | chr5.4:47621813-47621832 | MS.gene010292:intron | 35.0% | |
| AATTAGAACACGCTTACTTG+TGG | + | chr5.4:47621300-47621319 | MS.gene010292:intron | 35.0% | |
| ACAAAACCATCAATGAGGTA+TGG | + | chr5.4:47619705-47619724 | MS.gene010292:intron | 35.0% | |
| ACAGATGGACAAATTTCAGT+TGG | + | chr5.4:47620448-47620467 | MS.gene010292:intron | 35.0% | |
| ACCCTAAATATTGAGGGTTT+AGG | + | chr5.4:47621808-47621827 | MS.gene010292:intron | 35.0% | |
| AGTTGAACCAAATTTGGTCA+TGG | + | chr5.4:47619904-47619923 | MS.gene010292:CDS | 35.0% | |
| ATCAGAAGGAGTTACAAAGT+CGG | - | chr5.4:47622207-47622226 | None:intergenic | 35.0% | |
| ATCGTGAACCCTAAATATTG+AGG | + | chr5.4:47621801-47621820 | MS.gene010292:intron | 35.0% | |
| ATCTCCTTTCAACAAACCTT+AGG | - | chr5.4:47620623-47620642 | None:intergenic | 35.0% | |
| ATGAAAGATATGTGTGTTGG+GGG | + | chr5.4:47620765-47620784 | MS.gene010292:intron | 35.0% | |
| ATTGGCATTTGCATTTGCAA+TGG | - | chr5.4:47619953-47619972 | None:intergenic | 35.0% | |
| ATTTCTCTCTACTATCCAAC+TGG | - | chr5.4:47619520-47619539 | None:intergenic | 35.0% | |
| CAAGTATTCAGATGAGATGA+TGG | + | chr5.4:47620225-47620244 | MS.gene010292:CDS | 35.0% | |
| CACTACCTACATCAAATTCT+CGG | - | chr5.4:47620654-47620673 | None:intergenic | 35.0% | |
| CTAAATATTGAGGGTTTAGG+AGG | + | chr5.4:47621811-47621830 | MS.gene010292:intron | 35.0% | |
| CTCCTAAACCCTCAATATTT+AGG | - | chr5.4:47621813-47621832 | None:intergenic | 35.0% | |
| GATAAACCAAATTGAGGGAA+TGG | - | chr5.4:47622883-47622902 | None:intergenic | 35.0% | |
| GATGATCTTGATGTTGTTGA+TGG | - | chr5.4:47620009-47620028 | None:intergenic | 35.0% | |
| GTGTAACAAAACCATCAATG+AGG | + | chr5.4:47619700-47619719 | MS.gene010292:intron | 35.0% | |
| GTTCACGATGGATGATAATT+AGG | - | chr5.4:47621790-47621809 | None:intergenic | 35.0% | |
| TAAGACTTAGTCTCACATCA+TGG | - | chr5.4:47621101-47621120 | None:intergenic | 35.0% | |
| TAAGATTTGTCATTGTGGTC+AGG | + | chr5.4:47620330-47620349 | MS.gene010292:intron | 35.0% | |
| TCACTCCAACATACCAATTA+CGG | + | chr5.4:47623162-47623181 | MS.gene010292:CDS | 35.0% | |
| TCGTGAACCCTAAATATTGA+GGG | + | chr5.4:47621802-47621821 | MS.gene010292:intron | 35.0% | |
| TGATGGAAAAGACTATTGAG+AGG | + | chr5.4:47620242-47620261 | MS.gene010292:CDS | 35.0% | |
| TTTGGATGAAGGGTTTATGA+GGG | - | chr5.4:47622025-47622044 | None:intergenic | 35.0% | |
| ! | CTTTTCTTTCTCCTTTCACT+CGG | + | chr5.4:47622343-47622362 | MS.gene010292:intron | 35.0% |
| ! | GGGTACAAAATATGGTGTTA+AGG | - | chr5.4:47620845-47620864 | None:intergenic | 35.0% |
| ! | TATAACGATTAGCTCGTTTG+CGG | - | chr5.4:47621426-47621445 | None:intergenic | 35.0% |
| ! | TCAATATTTAGGGTTCACGA+TGG | - | chr5.4:47621802-47621821 | None:intergenic | 35.0% |
| ! | TCTGAACCTCTTCAATTTTG+AGG | - | chr5.4:47619496-47619515 | None:intergenic | 35.0% |
| ! | TCTTTTCCATTCCCTCAATT+TGG | + | chr5.4:47622874-47622893 | MS.gene010292:intron | 35.0% |
| ! | TGTTGATGGATACTGATAGA+AGG | - | chr5.4:47619995-47620014 | None:intergenic | 35.0% |
| !! | GTGTAGGGTTTTGTATAAGT+TGG | - | chr5.4:47619601-47619620 | None:intergenic | 35.0% |
| !! | TTTAACGGTTAGCTTGTTTG+CGG | - | chr5.4:47621723-47621742 | None:intergenic | 35.0% |
| !!! | GTCACATATATTTTGGCCTA+AGG | + | chr5.4:47620604-47620623 | MS.gene010292:intron | 35.0% |
| AACTCCTTCTGATCTTCTGT+TGG | + | chr5.4:47622214-47622233 | MS.gene010292:intron | 40.0% | |
| ACATGTTCAGATTCAAAGGG+AGG | + | chr5.4:47620172-47620191 | MS.gene010292:CDS | 40.0% | |
| ACTCCTTCTGATCTTCTGTT+GGG | + | chr5.4:47622215-47622234 | MS.gene010292:intron | 40.0% | |
| AGTCTCACATCATGGTGATT+CGG | - | chr5.4:47621093-47621112 | None:intergenic | 40.0% | |
| ATAGGGTTGTGTCCAGATTT+CGG | + | chr5.4:47620061-47620080 | MS.gene010292:intron | 40.0% | |
| ATGGGAATTGTAGGTAGTAG+TGG | - | chr5.4:47622276-47622295 | None:intergenic | 40.0% | |
| ATTAGCGTGTGTTTGGATGA+AGG | - | chr5.4:47622036-47622055 | None:intergenic | 40.0% | |
| CATGAAAACTGAGCCTCATT+TGG | - | chr5.4:47622846-47622865 | None:intergenic | 40.0% | |
| CCAAACACACGCTAATAGTT+GGG | + | chr5.4:47622040-47622059 | MS.gene010292:intron | 40.0% | |
| CTTTGCATGCTCACATACTT+TGG | + | chr5.4:47621673-47621692 | MS.gene010292:intron | 40.0% | |
| GAATTTGCAACACCGAAATC+TGG | - | chr5.4:47620076-47620095 | None:intergenic | 40.0% | |
| GATTTCGGCAAAGGTAATCT+TGG | - | chr5.4:47621332-47621351 | None:intergenic | 40.0% | |
| GGAGAAAAGGAAAGACGAAA+AGG | + | chr5.4:47622770-47622789 | MS.gene010292:intron | 40.0% | |
| GGTCTCTTAGTGATCATGAA+TGG | - | chr5.4:47620824-47620843 | None:intergenic | 40.0% | |
| GGTTACTCGGAAATACCAAT+CGG | + | chr5.4:47620124-47620143 | MS.gene010292:CDS | 40.0% | |
| GTAACTGCAACGTTGATGTT+TGG | + | chr5.4:47622500-47622519 | MS.gene010292:intron | 40.0% | |
| GTCGTCATAATTACCGTTGT+TGG | + | chr5.4:47621622-47621641 | MS.gene010292:intron | 40.0% | |
| GTTACAAAGTCGGGTTTCAT+AGG | - | chr5.4:47622197-47622216 | None:intergenic | 40.0% | |
| GTTACTCGGAAATACCAATC+GGG | + | chr5.4:47620125-47620144 | MS.gene010292:CDS | 40.0% | |
| GTTTGGATGAAGGGTTTATG+AGG | - | chr5.4:47622026-47622045 | None:intergenic | 40.0% | |
| TAAGACTCAGTCTCACATCA+CGG | - | chr5.4:47621653-47621672 | None:intergenic | 40.0% | |
| TACATCAAATTCTCGGCAAC+AGG | - | chr5.4:47620647-47620666 | None:intergenic | 40.0% | |
| TATGGTAACACTAGTGGTAG+TGG | + | chr5.4:47619644-47619663 | MS.gene010292:intron | 40.0% | |
| TCAGAAGGAGTTACAAAGTC+GGG | - | chr5.4:47622206-47622225 | None:intergenic | 40.0% | |
| TCCAAACACACGCTAATAGT+TGG | + | chr5.4:47622039-47622058 | MS.gene010292:intron | 40.0% | |
| TCTGGACACAACCCTATTAT+CGG | - | chr5.4:47620058-47620077 | None:intergenic | 40.0% | |
| TGGAAAAGACTATTGAGAGG+AGG | + | chr5.4:47620245-47620264 | MS.gene010292:CDS | 40.0% | |
| TGGGAATTGTAGGTAGTAGT+GGG | - | chr5.4:47622275-47622294 | None:intergenic | 40.0% | |
| TGTCACAAAGATTTCGGCAA+AGG | - | chr5.4:47621341-47621360 | None:intergenic | 40.0% | |
| TGTGAAGCCATGACCAAATT+TGG | - | chr5.4:47619914-47619933 | None:intergenic | 40.0% | |
| TGTTGCCGAGAATTTGATGT+AGG | + | chr5.4:47620646-47620665 | MS.gene010292:intron | 40.0% | |
| TTACTCGGAAATACCAATCG+GGG | + | chr5.4:47620126-47620145 | MS.gene010292:CDS | 40.0% | |
| TTAGCGTGTGTTTGGATGAA+GGG | - | chr5.4:47622035-47622054 | None:intergenic | 40.0% | |
| TTGGATGAAGGGTTTATGAG+GGG | - | chr5.4:47622024-47622043 | None:intergenic | 40.0% | |
| ! | ATTTTGTACCCCAAACCTCA+AGG | + | chr5.4:47620854-47620873 | MS.gene010292:intron | 40.0% |
| ! | GAGGTTTGGGGTACAAAATA+TGG | - | chr5.4:47620853-47620872 | None:intergenic | 40.0% |
| ! | GGTTATGGTTAGGTTGTTTG+CGG | - | chr5.4:47621171-47621190 | None:intergenic | 40.0% |
| !! | GAAGGCATTTGCATTTGCAA+TGG | - | chr5.4:47619977-47619996 | None:intergenic | 40.0% |
| !! | GATTGATGGGCTCCAATTAA+AGG | + | chr5.4:47622911-47622930 | MS.gene010292:intron | 40.0% |
| !! | TTGGCCTAAGGTTTGTTGAA+AGG | + | chr5.4:47620616-47620635 | MS.gene010292:intron | 40.0% |
| ACACGCCGTAATTGGTATGT+TGG | - | chr5.4:47623170-47623189 | None:intergenic | 45.0% | |
| ACACTATAGACCCAACCACT+AGG | - | chr5.4:47621223-47621242 | None:intergenic | 45.0% | |
| ACATCCATGATGAACGAACG+AGG | + | chr5.4:47622807-47622826 | MS.gene010292:intron | 45.0% | |
| AGTGTGTCCTAATGTGGATC+AGG | - | chr5.4:47620955-47620974 | None:intergenic | 45.0% | |
| CACTATAGACCCAACCACTA+GGG | - | chr5.4:47621222-47621241 | None:intergenic | 45.0% | |
| CATCACGGTGATTCCAACAA+CGG | - | chr5.4:47621638-47621657 | None:intergenic | 45.0% | |
| CATCATGAACCCTAGTGGTT+GGG | + | chr5.4:47621210-47621229 | MS.gene010292:intron | 45.0% | |
| CCCAACTATTAGCGTGTGTT+TGG | - | chr5.4:47622043-47622062 | None:intergenic | 45.0% | |
| CTCACTCCATACCTCATTGA+TGG | - | chr5.4:47619714-47619733 | None:intergenic | 45.0% | |
| CTTTGCATGCACACATACTC+TGG | + | chr5.4:47621376-47621395 | MS.gene010292:intron | 45.0% | |
| GAGATCAAGGGCAAAGAAAC+AGG | + | chr5.4:47620303-47620322 | MS.gene010292:CDS | 45.0% | |
| GATCCACATTAGGACACACT+AGG | + | chr5.4:47620955-47620974 | MS.gene010292:intron | 45.0% | |
| GGGAATTGTAGGTAGTAGTG+GGG | - | chr5.4:47622274-47622293 | None:intergenic | 45.0% | |
| TCATCCATCATGAACCCTAG+TGG | + | chr5.4:47621205-47621224 | MS.gene010292:intron | 45.0% | |
| TGAAGGGTTTATGAGGGGAA+AGG | - | chr5.4:47622019-47622038 | None:intergenic | 45.0% | |
| TGCAATGGTAACCAACCTTC+TGG | - | chr5.4:47619938-47619957 | None:intergenic | 45.0% | |
| TTGACCTCGTTCGTTCATCA+TGG | - | chr5.4:47622814-47622833 | None:intergenic | 45.0% | |
| ! | ACATCATGGTGATTCGGCAA+CGG | - | chr5.4:47621087-47621106 | None:intergenic | 45.0% |
| ! | TCACTAGCCTGATCCACATT+AGG | + | chr5.4:47620945-47620964 | MS.gene010292:intron | 45.0% |
| !! | AACACTAGTGGTAGTGGTAG+TGG | + | chr5.4:47619650-47619669 | MS.gene010292:intron | 45.0% |
| !!! | TTTAAAAAATAATGAATTTT+CGG | - | chr5.4:47621569-47621588 | None:intergenic | 5.0% |
| !!! | TTTTTTATTAAAAAAAATTG+TGG | + | chr5.4:47622570-47622589 | MS.gene010292:intron | 5.0% |
| CATCGTGAACCCTAGTGGTT+GGG | + | chr5.4:47621507-47621526 | MS.gene010292:intron | 50.0% | |
| CCAACCACTAGGGTTCATGA+TGG | - | chr5.4:47621212-47621231 | None:intergenic | 50.0% | |
| CCATCATGAACCCTAGTGGT+TGG | + | chr5.4:47621209-47621228 | MS.gene010292:intron | 50.0% | |
| CCTCCCAACAGAAGATCAGA+AGG | - | chr5.4:47622221-47622240 | None:intergenic | 50.0% | |
| CCTTCTGATCTTCTGTTGGG+AGG | + | chr5.4:47622218-47622237 | MS.gene010292:intron | 50.0% | |
| CGAATCTGCTGCGAGATCAA+GGG | + | chr5.4:47620291-47620310 | MS.gene010292:CDS | 50.0% | |
| CTGAGCTAACACGCCGTAAT+TGG | - | chr5.4:47623178-47623197 | None:intergenic | 50.0% | |
| GCTCGACTCAGTTTGGAAGA+GGG | - | chr5.4:47620989-47621008 | None:intergenic | 50.0% | |
| GGTCCTAGTGTGTCCTAATG+TGG | - | chr5.4:47620961-47620980 | None:intergenic | 50.0% | |
| GTGGATCAGGCTAGTGATGT+GGG | - | chr5.4:47620942-47620961 | None:intergenic | 50.0% | |
| TCATCCATCGTGAACCCTAG+TGG | + | chr5.4:47621502-47621521 | MS.gene010292:intron | 50.0% | |
| TGAAGAGGTTCAGAGCCAGT+TGG | + | chr5.4:47619502-47619521 | MS.gene010292:intron | 50.0% | |
| TGTGGATCAGGCTAGTGATG+TGG | - | chr5.4:47620943-47620962 | None:intergenic | 50.0% | |
| TGTGGTCAGGCATAAGCATC+AGG | + | chr5.4:47620343-47620362 | MS.gene010292:intron | 50.0% | |
| TTCCAAACTGAGTCGAGCGA+TGG | + | chr5.4:47620991-47621010 | MS.gene010292:intron | 50.0% | |
| TTGAGGGTTTAGGAGGGGAA+AGG | + | chr5.4:47621818-47621837 | MS.gene010292:intron | 50.0% | |
| TTGATCTCGCAGCAGATTCG+CGG | - | chr5.4:47620291-47620310 | None:intergenic | 50.0% | |
| ! | TCAGATTCAAAGGGAGGTGC+TGG | + | chr5.4:47620178-47620197 | MS.gene010292:CDS | 50.0% |
| !! | AGTGGTAGTGGTAGTGGTAG+TGG | + | chr5.4:47619656-47619675 | MS.gene010292:intron | 50.0% |
| AGCCATCGCTCGACTCAGTT+TGG | - | chr5.4:47620996-47621015 | None:intergenic | 55.0% | |
| AGGGTTTAGGAGGGGAAAGG+AGG | + | chr5.4:47621821-47621840 | MS.gene010292:intron | 55.0% | |
| ATTGACGCCCCGACACTACT+CGG | - | chr5.4:47620794-47620813 | None:intergenic | 55.0% | |
| CCAACCACTAGGGTTCACGA+TGG | - | chr5.4:47621509-47621528 | None:intergenic | 55.0% | |
| CCATCGTGAACCCTAGTGGT+TGG | + | chr5.4:47621506-47621525 | MS.gene010292:intron | 55.0% | |
| CGCTCGACTCAGTTTGGAAG+AGG | - | chr5.4:47620990-47621009 | None:intergenic | 55.0% | |
| GCGAATCTGCTGCGAGATCA+AGG | + | chr5.4:47620290-47620309 | MS.gene010292:CDS | 55.0% | |
| GGGGCAACACAGTACCTCTT+GGG | - | chr5.4:47622255-47622274 | None:intergenic | 55.0% | |
| GGGTTTAGGAGGGGAAAGGA+GGG | + | chr5.4:47621822-47621841 | MS.gene010292:intron | 55.0% | |
| GGTTTAGGAGGGGAAAGGAG+GGG | + | chr5.4:47621823-47621842 | MS.gene010292:intron | 55.0% | |
| GTCATGGCTTCACAGCCAGA+AGG | + | chr5.4:47619920-47619939 | MS.gene010292:CDS | 55.0% | |
| TCAGTTTGGAAGAGGGAGCG+CGG | - | chr5.4:47620982-47621001 | None:intergenic | 55.0% | |
| TGAGAGGAGGCAGAAGCGAA+TGG | + | chr5.4:47620258-47620277 | MS.gene010292:CDS | 55.0% | |
| TGGCTTCACAGCCAGAAGGT+TGG | + | chr5.4:47619924-47619943 | MS.gene010292:intron | 55.0% | |
| TGGGGCAACACAGTACCTCT+TGG | - | chr5.4:47622256-47622275 | None:intergenic | 55.0% | |
| TGTGTTGTCGTTGCCCCGAT+TGG | - | chr5.4:47620142-47620161 | None:intergenic | 55.0% | |
| !! | GATTCAAAGGGAGGTGCTGG+TGG | + | chr5.4:47620181-47620200 | MS.gene010292:CDS | 55.0% |
| TGGGGGAGTCCGAGTAGTGT+CGG | + | chr5.4:47620782-47620801 | MS.gene010292:intron | 60.0% | |
| !! | AAGGGAGGTGCTGGTGGAAG+CGG | + | chr5.4:47620187-47620206 | MS.gene010292:CDS | 60.0% |
| GGGGAGTCCGAGTAGTGTCG+GGG | + | chr5.4:47620784-47620803 | MS.gene010292:intron | 65.0% | |
| GGGGGAGTCCGAGTAGTGTC+GGG | + | chr5.4:47620783-47620802 | MS.gene010292:intron | 65.0% | |
| ! | CTGGTGGAAGCGGCGTTGGA+AGG | + | chr5.4:47620197-47620216 | MS.gene010292:CDS | 65.0% |
| !! | GGTGCTGGTGGAAGCGGCGT+TGG | + | chr5.4:47620193-47620212 | MS.gene010292:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 47619434 | 47623208 | 47619434 | ID=MS.gene010292 |
| chr5.4 | mRNA | 47619434 | 47623208 | 47619434 | ID=MS.gene010292.t1;Parent=MS.gene010292 |
| chr5.4 | exon | 47619434 | 47619469 | 47619434 | ID=MS.gene010292.t1.exon1;Parent=MS.gene010292.t1 |
| chr5.4 | CDS | 47619434 | 47619469 | 47619434 | ID=cds.MS.gene010292.t1;Parent=MS.gene010292.t1 |
| chr5.4 | exon | 47619836 | 47619941 | 47619836 | ID=MS.gene010292.t1.exon2;Parent=MS.gene010292.t1 |
| chr5.4 | CDS | 47619836 | 47619941 | 47619836 | ID=cds.MS.gene010292.t1;Parent=MS.gene010292.t1 |
| chr5.4 | exon | 47620065 | 47620324 | 47620065 | ID=MS.gene010292.t1.exon3;Parent=MS.gene010292.t1 |
| chr5.4 | CDS | 47620065 | 47620324 | 47620065 | ID=cds.MS.gene010292.t1;Parent=MS.gene010292.t1 |
| chr5.4 | exon | 47623134 | 47623208 | 47623134 | ID=MS.gene010292.t1.exon4;Parent=MS.gene010292.t1 |
| chr5.4 | CDS | 47623134 | 47623208 | 47623134 | ID=cds.MS.gene010292.t1;Parent=MS.gene010292.t1 |
| Gene Sequence |
| Protein sequence |
