AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene010305

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010305.t1 MTR_5g060770 57.303 356 39 7 9 302 11 315 1.40e-110 326
MS.gene010305.t1 MTR_5g060780 65.399 263 73 5 9 266 65 314 1.76e-103 310
MS.gene010305.t1 MTR_5g460920 65.399 263 73 5 9 266 65 314 8.78e-103 308
MS.gene010305.t1 MTR_5g061890 64.259 263 76 5 9 266 65 314 8.12e-101 303
MS.gene010305.t1 MTR_5g460910 49.719 356 44 8 9 302 28 310 3.88e-86 263
MS.gene010305.t1 MTR_5g060630 52.727 275 101 7 20 266 76 349 2.39e-79 251
MS.gene010305.t1 MTR_5g060630 70.149 67 20 0 265 331 439 505 4.25e-21 94.4
MS.gene010305.t1 MTR_5g460740 52.727 275 101 7 20 266 76 349 2.39e-79 251
MS.gene010305.t1 MTR_5g460740 70.149 67 20 0 265 331 439 505 4.25e-21 94.4
MS.gene010305.t1 MTR_5g061220 45.533 347 122 13 15 315 78 403 2.55e-71 231
MS.gene010305.t1 MTR_1g058210 49.242 264 105 9 15 266 71 317 1.74e-60 201
MS.gene010305.t1 MTR_5g040740 43.478 276 115 11 7 266 63 313 9.77e-53 179
MS.gene010305.t1 MTR_5g040880 38.788 330 162 11 7 317 62 370 2.06e-51 178
MS.gene010305.t1 MTR_2g024430 34.217 415 168 15 5 344 70 454 2.77e-50 175
MS.gene010305.t1 MTR_2g006270 42.751 269 122 11 9 266 68 315 1.57e-47 167
MS.gene010305.t1 MTR_5g062960 52.778 180 46 4 180 321 1 179 3.07e-47 159
MS.gene010305.t1 MTR_5g082140 34.511 368 154 12 15 315 71 418 5.00e-46 163
MS.gene010305.t1 MTR_2g006380 40.755 265 116 12 15 266 81 317 7.12e-43 154
MS.gene010305.t1 MTR_3g073420 35.254 295 122 10 7 252 68 342 5.26e-33 129
MS.gene010305.t1 MTR_1g064430 30.909 275 130 9 15 237 83 349 1.55e-24 105
MS.gene010305.t1 MTR_1g064430 30.909 275 130 9 15 237 96 362 1.69e-24 105
MS.gene010305.t1 MTR_5g062970 41.558 154 71 4 6 149 85 229 8.35e-24 98.6
MS.gene010305.t1 MTR_2g094570 28.912 294 130 10 15 252 67 337 5.15e-23 100
MS.gene010305.t1 MTR_2g094570 28.912 294 130 10 15 252 67 337 5.26e-23 100
MS.gene010305.t1 MTR_2g094570 28.912 294 130 10 15 252 123 393 7.94e-23 100
MS.gene010305.t1 MTR_4g058930 31.535 241 106 8 67 252 108 344 4.16e-22 97.8
MS.gene010305.t1 MTR_4g058930 30.705 241 108 8 67 252 108 344 4.63e-22 97.8
MS.gene010305.t1 MTR_1g094960 28.763 299 136 10 9 252 68 344 5.42e-22 97.4
MS.gene010305.t1 MTR_7g101275 28.205 273 145 10 20 266 53 300 2.61e-20 91.7
MS.gene010305.t1 MTR_2g018690 29.286 280 146 11 9 263 79 331 1.62e-18 87.4
MS.gene010305.t1 MTR_2g005240 28.346 254 149 8 20 259 89 323 2.39e-17 83.6
MS.gene010305.t1 MTR_8g079492 27.698 278 153 11 9 263 78 330 7.30e-17 82.4
MS.gene010305.t1 MTR_8g079492 27.698 278 153 11 9 263 78 330 7.37e-17 82.4
MS.gene010305.t1 MTR_7g101280 25.220 341 148 12 2 262 63 376 8.30e-17 82.0
MS.gene010305.t1 MTR_0041s0110 25.220 341 148 12 2 262 63 376 8.30e-17 82.0
MS.gene010305.t1 MTR_0041s0120 27.465 284 145 11 20 266 53 312 1.45e-16 80.5
MS.gene010305.t1 MTR_8g079492 28.044 271 147 11 16 263 3 248 1.93e-16 80.9
MS.gene010305.t1 MTR_5g076270 27.820 266 145 9 9 252 80 320 2.26e-16 80.9
MS.gene010305.t1 MTR_7g062540 27.459 244 144 8 20 249 80 304 3.59e-16 80.1
MS.gene010305.t1 MTR_3g064050 27.444 266 146 9 9 252 82 322 5.13e-16 79.7
MS.gene010305.t1 MTR_4g124900 26.809 235 144 6 16 236 85 305 2.80e-15 77.4
MS.gene010305.t1 MTR_4g124900 26.809 235 144 6 16 236 85 305 3.14e-15 77.4
MS.gene010305.t1 MTR_4g021580 26.838 272 163 9 20 280 85 331 3.33e-15 77.0
MS.gene010305.t1 MTR_4g021580 26.838 272 163 9 20 280 85 331 3.62e-15 77.0
MS.gene010305.t1 MTR_2g043250 26.724 232 148 5 16 236 85 305 4.72e-15 77.0
MS.gene010305.t1 MTR_2g014770 25.946 185 124 5 68 240 158 341 8.40e-15 75.9
MS.gene010305.t1 MTR_4g088210 25.946 185 124 5 68 240 148 331 1.12e-14 75.5
MS.gene010305.t1 MTR_2g014770 25.946 185 124 5 68 240 158 341 1.14e-14 75.5
MS.gene010305.t1 MTR_4g088210 25.946 185 124 5 68 240 148 331 1.30e-14 75.5
MS.gene010305.t1 MTR_2g093740 31.188 202 112 9 58 236 20 217 8.81e-14 72.8
MS.gene010305.t1 MTR_2g093740 31.188 202 112 9 58 236 150 347 1.03e-13 72.4
MS.gene010305.t1 MTR_2g093740 31.188 202 112 9 58 236 20 217 1.09e-13 72.4
MS.gene010305.t1 MTR_2g093740 31.188 202 112 9 58 236 150 347 1.28e-13 72.4
MS.gene010305.t1 MTR_2g093740 31.188 202 112 9 58 236 150 347 1.38e-13 72.4
MS.gene010305.t1 MTR_8g100050 27.717 184 116 5 67 236 161 341 6.39e-13 70.1
MS.gene010305.t1 MTR_8g100050 27.717 184 116 5 67 236 161 341 7.38e-13 70.1
MS.gene010305.t1 MTR_8g101360 29.143 175 85 5 8 163 86 240 1.89e-12 68.9
MS.gene010305.t1 MTR_1g024025 27.165 254 141 11 9 240 99 330 4.15e-12 67.8
MS.gene010305.t1 MTR_8g027440 27.027 259 153 9 20 263 95 332 1.05e-11 66.2
MS.gene010305.t1 MTR_2g093740 29.302 215 112 10 58 236 20 230 9.22e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010305.t1 AT1G77850 31.317 281 141 9 15 254 73 342 6.82e-30 120
MS.gene010305.t1 AT1G77850 31.317 281 141 9 15 254 73 342 7.94e-30 120
MS.gene010305.t1 AT4G30080 30.693 303 145 12 15 266 74 362 1.41e-23 102
MS.gene010305.t1 AT2G28350 29.054 296 135 10 15 252 65 343 3.42e-22 98.2
MS.gene010305.t1 AT2G28350 29.054 296 135 10 15 252 65 343 4.25e-22 97.8
MS.gene010305.t1 AT1G30330 29.084 251 135 9 9 237 79 308 3.82e-18 86.3
MS.gene010305.t1 AT1G59750 27.907 258 151 9 20 263 88 324 3.84e-18 85.9
MS.gene010305.t1 AT1G59750 27.907 258 151 9 20 263 88 324 3.84e-18 85.9
MS.gene010305.t1 AT1G30330 29.084 251 135 9 9 237 81 310 3.90e-18 86.3
MS.gene010305.t1 AT1G30330 29.084 251 135 9 9 237 81 310 3.90e-18 86.3
MS.gene010305.t1 AT1G59750 27.907 258 151 9 20 263 88 324 4.01e-18 85.9
MS.gene010305.t1 AT1G59750 27.907 258 151 9 20 263 88 324 4.05e-18 85.9
MS.gene010305.t1 AT5G37020 26.978 278 155 10 9 263 78 330 2.31e-17 84.0
MS.gene010305.t1 AT5G37020 26.978 278 155 10 9 263 78 330 2.54e-17 83.6
MS.gene010305.t1 AT5G62000 28.085 235 141 6 16 236 123 343 3.01e-17 83.6
MS.gene010305.t1 AT5G62000 28.085 235 141 6 16 236 123 343 3.01e-17 83.6
MS.gene010305.t1 AT5G62000 28.085 235 141 6 16 236 123 343 3.01e-17 83.6
MS.gene010305.t1 AT5G62000 28.085 235 141 6 16 236 123 343 3.01e-17 83.6
MS.gene010305.t1 AT5G62000 28.085 235 141 6 16 236 123 343 3.03e-17 83.6
MS.gene010305.t1 AT2G33860 29.474 190 113 7 68 241 2 186 2.84e-16 80.1
MS.gene010305.t1 AT2G33860 29.474 190 113 7 68 241 159 343 3.87e-16 80.1
MS.gene010305.t1 AT2G46530 28.571 231 134 7 20 236 88 301 6.77e-16 79.3
MS.gene010305.t1 AT2G46530 28.571 231 134 7 20 236 109 322 7.65e-16 79.0
MS.gene010305.t1 AT5G37020 28.767 219 119 9 68 263 31 235 1.64e-15 78.2
MS.gene010305.t1 AT3G61830 27.706 231 136 8 20 236 41 254 6.68e-15 76.3
MS.gene010305.t1 AT3G61830 27.706 231 136 8 20 236 92 305 7.16e-15 76.3
MS.gene010305.t1 AT4G23980 25.794 252 160 7 20 262 79 312 1.88e-14 74.7
MS.gene010305.t1 AT4G23980 25.794 252 160 7 20 262 79 312 2.25e-14 74.7
MS.gene010305.t1 AT1G34390 26.236 263 155 8 16 266 89 324 8.79e-14 72.8
MS.gene010305.t1 AT1G34310 27.341 267 149 10 16 266 89 326 9.15e-14 72.8
MS.gene010305.t1 AT5G20730 28.085 235 140 7 16 235 86 306 9.28e-14 73.2
MS.gene010305.t1 AT5G20730 28.085 235 140 7 16 235 86 306 1.02e-13 72.8
MS.gene010305.t1 AT5G20730 28.511 235 138 8 16 235 86 305 1.41e-13 72.4
MS.gene010305.t1 AT1G34410 26.042 288 162 11 16 287 89 341 2.56e-13 71.2
MS.gene010305.t1 AT2G46530 28.500 200 120 7 51 236 24 214 5.20e-13 70.1
MS.gene010305.t1 AT1G19220 32.075 159 75 5 16 158 85 226 2.20e-12 68.9
MS.gene010305.t1 AT1G35240 26.042 288 162 11 16 287 89 341 3.78e-12 67.8
MS.gene010305.t1 AT1G35540 25.843 267 153 10 16 266 89 326 4.01e-12 67.8
MS.gene010305.t1 AT5G60450 28.293 205 123 8 57 241 136 336 9.26e-12 66.6
MS.gene010305.t1 AT5G60450 28.293 205 123 8 57 241 160 360 9.63e-12 66.6
MS.gene010305.t1 AT1G19850 30.000 160 91 5 9 158 110 258 1.26e-11 66.2
MS.gene010305.t1 AT1G19850 30.000 160 91 5 9 158 99 247 1.27e-11 66.2

Find 75 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGAAAACAACAGAATCTT+TGG 0.216238 5.4:-47454000 None:intergenic
ATGAAGATTGGTTGGGAATC+TGG 0.244310 5.4:+47454236 MS.gene010305:CDS
AAGGATCCCATTGTTGAATT+AGG 0.252137 5.4:-47455153 None:intergenic
ATTCTTCCAATGTCCCTAAT+TGG 0.255553 5.4:+47454351 MS.gene010305:CDS
TGTTTCCATCGTCGTCTTCT+TGG 0.258015 5.4:-47453758 None:intergenic
ACCTCAAGAATGTGCCAATT+AGG 0.262799 5.4:-47454365 None:intergenic
CCTCCTCCTCCTGTTATTCC+TGG 0.298255 5.4:+47453735 MS.gene010305:CDS
CTTTCACCTGTTTCAGCTGC+AGG 0.305850 5.4:-47454074 None:intergenic
GGCAAGAAGTCAGCTGATTT+AGG 0.320028 5.4:-47455357 None:intergenic
GACTTTACCAAGTCAAGCTT+TGG 0.361211 5.4:-47453864 None:intergenic
AGGAGAAGGAGGAGGATCTT+GGG 0.379070 5.4:-47453688 None:intergenic
AACTTCCCTGCAGCTGAAAC+AGG 0.384041 5.4:+47454068 MS.gene010305:CDS
GAGGAGAAGGAGGAGGATCT+TGG 0.384725 5.4:-47453689 None:intergenic
CCTCAAGAATGTGCCAATTA+GGG 0.384917 5.4:-47454364 None:intergenic
AGATTCCCAACCAATCTTCA+TGG 0.388833 5.4:-47454234 None:intergenic
TATCAGAATCCAACCATGTT+TGG 0.389045 5.4:-47455179 None:intergenic
AAGAATCTGATACAGATAAA+TGG 0.391533 5.4:-47455236 None:intergenic
CAGCTGGCATGCAGGGAGCC+AGG 0.391755 5.4:+47455208 MS.gene010305:CDS
TCTTCTTGGCCAGGAATAAC+AGG 0.405708 5.4:-47453744 None:intergenic
GGAGGATCTTGGGCAGTTAC+CGG 0.415046 5.4:-47453678 None:intergenic
CCATCGTCGTCTTCTTGGCC+AGG 0.419252 5.4:-47453753 None:intergenic
CGACCTTAAAAGCCAAGAAT+GGG 0.432454 5.4:+47453905 MS.gene010305:CDS
GGAATAACAGGAGGAGGAGG+AGG 0.433203 5.4:-47453732 None:intergenic
AGTACAATGGCAGGGTTTAG+TGG 0.442032 5.4:+47455300 MS.gene010305:CDS
TGAATTCGACGAGCGTGAAC+AGG 0.445951 5.4:+47452115 MS.gene010305:CDS
ATCCAACCATGTTTGGTTCA+AGG 0.448487 5.4:-47455172 None:intergenic
GGAGGAGGAGGAGAAGGAGG+AGG 0.448759 5.4:-47453696 None:intergenic
ATCGGGAACAGTACAATGGC+AGG 0.465455 5.4:+47455291 MS.gene010305:CDS
GTAGATGATTCCATGAAGAT+TGG 0.467615 5.4:+47454224 MS.gene010305:CDS
TACAGATAAATGGTCGTGCC+TGG 0.474038 5.4:-47455226 None:intergenic
TCACACCATTTCCTAGCTGT+TGG 0.474083 5.4:-47454179 None:intergenic
TACCGGAGTGAGGAGCAGTT+TGG 0.479172 5.4:-47453661 None:intergenic
ATTATCCAACAGCTAGGAAA+TGG 0.485842 5.4:+47454174 MS.gene010305:CDS
ATGATTCCATGAAGATTGGT+TGG 0.491255 5.4:+47454228 MS.gene010305:CDS
TGATTCCATGAAGATTGGTT+GGG 0.496383 5.4:+47454229 MS.gene010305:CDS
GACAAGGGTGATGGTTTCAT+CGG 0.500866 5.4:+47455273 MS.gene010305:CDS
CCGACCTTAAAAGCCAAGAA+TGG 0.501034 5.4:+47453904 MS.gene010305:CDS
GATCTTTCCAAAGCTTGACT+TGG 0.505228 5.4:+47453857 MS.gene010305:CDS
AGTGAGAGCATCAACAAATC+CGG 0.509407 5.4:-47453625 None:intergenic
GAGTTACCTAATTCAACAAT+GGG 0.511187 5.4:+47455147 MS.gene010305:CDS
ATCCTTGAACCAAACATGGT+TGG 0.512134 5.4:+47455170 MS.gene010305:CDS
ACTTGTTGCTTGGTTCATTG+AGG 0.515871 5.4:-47455378 None:intergenic
CTGAAACAGGTGAAAGAGGC+AGG 0.517841 5.4:+47454081 MS.gene010305:CDS
TTTGAATGCAGTGGAATTGG+CGG 0.522289 5.4:+47454124 MS.gene010305:CDS
TTTCACCTGTTTCAGCTGCA+GGG 0.529812 5.4:-47454073 None:intergenic
AAAGGCATATTATCAGCCTA+AGG 0.530867 5.4:+47454304 MS.gene010305:CDS
ACAAGGGTGATGGTTTCATC+GGG 0.532238 5.4:+47455274 MS.gene010305:CDS
CCAGGAATAACAGGAGGAGG+AGG 0.533404 5.4:-47453735 None:intergenic
CCCTAATTGGCACATTCTTG+AGG 0.538147 5.4:+47454364 MS.gene010305:CDS
CGCCAAACTGCTCCTCACTC+CGG 0.538251 5.4:+47453659 MS.gene010305:CDS
AAGGCATATTATCAGCCTAA+GGG 0.550266 5.4:+47454305 MS.gene010305:CDS
GCAGCTGAAACAGGTGAAAG+AGG 0.552603 5.4:+47454077 MS.gene010305:CDS
ACAGTAGAGATTGTCCCCTT+AGG 0.555913 5.4:-47454320 None:intergenic
AGACGAGTCTTCAAATTCAA+AGG 0.557318 5.4:+47454286 MS.gene010305:CDS
GGAGTTACCTAATTCAACAA+TGG 0.567859 5.4:+47455146 MS.gene010305:intron
AATGTGCCAATTAGGGACAT+TGG 0.568650 5.4:-47454357 None:intergenic
TGTTGATGCTCTCACTGATG+AGG 0.570829 5.4:+47453632 MS.gene010305:CDS
TGGCCAGGAATAACAGGAGG+AGG 0.572795 5.4:-47453738 None:intergenic
GGAATTGGCGGACAAGAACA+TGG 0.578093 5.4:+47454136 MS.gene010305:CDS
TTGTGTATTATCCAACAGCT+AGG 0.584708 5.4:+47454168 MS.gene010305:CDS
TCAGTAGACTACGTACTGGC+TGG 0.603214 5.4:+47453946 MS.gene010305:CDS
CAGGAATTTAACTGAGAGTG+CGG 0.604399 5.4:+47454100 MS.gene010305:CDS
ATCAAGTCAGCGCATTCATG+AGG 0.615421 5.4:-47453837 None:intergenic
AAACTCAGTAGACTACGTAC+TGG 0.617424 5.4:+47453942 MS.gene010305:CDS
TCTGACACAGAGCTATACAT+TGG 0.617625 5.4:+47455330 MS.gene010305:CDS
TGGGATCCTTGAACCAAACA+TGG 0.620645 5.4:+47455166 MS.gene010305:CDS
TCGGGAACAGTACAATGGCA+GGG 0.632286 5.4:+47455292 MS.gene010305:CDS
ACCTTAAAAGCCAAGAATGG+GGG 0.634733 5.4:+47453907 MS.gene010305:CDS
GACCTTAAAAGCCAAGAATG+GGG 0.635286 5.4:+47453906 MS.gene010305:CDS
CTTGGGCAGTTACCGGAGTG+AGG 0.639258 5.4:-47453671 None:intergenic
AGGCATATTATCAGCCTAAG+GGG 0.646519 5.4:+47454306 MS.gene010305:CDS
TTTCATCGGGAACAGTACAA+TGG 0.687293 5.4:+47455287 MS.gene010305:CDS
CCTGGCCAAGAAGACGACGA+TGG 0.694726 5.4:+47453753 MS.gene010305:CDS
TCTTGGCCAGGAATAACAGG+AGG 0.699852 5.4:-47453741 None:intergenic
TAGTCTACTGAGTTTCACGT+AGG 0.730433 5.4:-47453934 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAAAAGATAACTATA+CGG + chr5.4:47452230-47452249 MS.gene010305:intron 10.0%
!! GAATCAATTAATTAAAAAAA+AGG + chr5.4:47452295-47452314 MS.gene010305:intron 10.0%
!! TAATTAAACAAAATAAAAGA+TGG + chr5.4:47452387-47452406 MS.gene010305:intron 10.0%
!! TATAATAATACAAATAACAA+AGG + chr5.4:47452201-47452220 MS.gene010305:intron 10.0%
!!! ATTTAACATTATTTTTGTTT+AGG - chr5.4:47452896-47452915 None:intergenic 10.0%
!! CTTATCTTAAAGAAAAAAAA+AGG + chr5.4:47452273-47452292 MS.gene010305:intron 15.0%
!! TAAAATCGAATCAAAATTAA+TGG + chr5.4:47452864-47452883 MS.gene010305:intron 15.0%
!!! TGATTTTTCAATCAAAAATT+CGG - chr5.4:47452483-47452502 None:intergenic 15.0%
!! AATTAACCTATGATAAAGAA+GGG - chr5.4:47454911-47454930 None:intergenic 20.0%
!! ATGAAAAGTTTCTTATCAAT+TGG - chr5.4:47454796-47454815 None:intergenic 20.0%
!! ATTATGAAATTCATGCATAA+TGG - chr5.4:47453327-47453346 None:intergenic 20.0%
!! ATTGATACGTATAAAAAGAA+TGG + chr5.4:47453270-47453289 MS.gene010305:intron 20.0%
!! TCAAACAAATCATGAAATTA+TGG - chr5.4:47454454-47454473 None:intergenic 20.0%
!! TGTGAAAGAATAAAAAAACT+TGG + chr5.4:47453184-47453203 MS.gene010305:intron 20.0%
!! TTCTTTATCATAGGTTAATT+GGG + chr5.4:47454911-47454930 MS.gene010305:intron 20.0%
!!! AATTCCAACTAATTTTTTTC+TGG - chr5.4:47454036-47454055 None:intergenic 20.0%
!!! CAATGTTTTAGAATTACATT+TGG - chr5.4:47454614-47454633 None:intergenic 20.0%
!!! GATTTTGTTTTGATAAATGA+AGG - chr5.4:47452589-47452608 None:intergenic 20.0%
!!! TATCTTAAAATACCTCATTT+TGG - chr5.4:47452452-47452471 None:intergenic 20.0%
!!! TTTGTATTTTGCAAGATTTT+AGG - chr5.4:47454942-47454961 None:intergenic 20.0%
! AAGAATCTGATACAGATAAA+TGG - chr5.4:47455239-47455258 None:intergenic 25.0%
! ACATAAATAACACAAAGTCT+AGG + chr5.4:47452973-47452992 MS.gene010305:intron 25.0%
! ACCTAGACAAAATACTTAAA+AGG + chr5.4:47453034-47453053 MS.gene010305:intron 25.0%
! AGAAGAATATGGAATTTGTA+GGG - chr5.4:47455065-47455084 None:intergenic 25.0%
! CAATTAACCTATGATAAAGA+AGG - chr5.4:47454912-47454931 None:intergenic 25.0%
! CTGTTATGTATTTATAGAAC+CGG + chr5.4:47453208-47453227 MS.gene010305:intron 25.0%
! CTTCTTTATCATAGGTTAAT+TGG + chr5.4:47454910-47454929 MS.gene010305:intron 25.0%
! TACAATGAGAAATGCTTAAA+AGG - chr5.4:47454729-47454748 None:intergenic 25.0%
! TATGATAAAGAAGGGAAAAA+TGG - chr5.4:47454903-47454922 None:intergenic 25.0%
! TATGTATTGTTGTCAAAATC+CGG - chr5.4:47453465-47453484 None:intergenic 25.0%
! TGAATAAAGTCACAAAATCA+TGG + chr5.4:47453423-47453442 MS.gene010305:intron 25.0%
!! ACAAGGATTTTTCTTCTTTT+GGG + chr5.4:47453371-47453390 MS.gene010305:intron 25.0%
!! ATTTTTCCCTTCTTTATCAT+AGG + chr5.4:47454902-47454921 MS.gene010305:intron 25.0%
!! TACAAGGATTTTTCTTCTTT+TGG + chr5.4:47453370-47453389 MS.gene010305:intron 25.0%
!! TTTTGTACAATAGTCCATAT+AGG + chr5.4:47452822-47452841 MS.gene010305:intron 25.0%
!!! AACAATCGATTCTAAAATGT+TGG - chr5.4:47454665-47454684 None:intergenic 25.0%
!!! ACGGACATTAGTTTTTTTTT+GGG + chr5.4:47452249-47452268 MS.gene010305:intron 25.0%
!!! ACTTTTTTTTTTGAAGGGAA+TGG - chr5.4:47455017-47455036 None:intergenic 25.0%
!!! CTAGGACTTTTTTTTTTGAA+GGG - chr5.4:47455022-47455041 None:intergenic 25.0%
!!! GATTTTGATGCAATTTTACA+AGG + chr5.4:47453354-47453373 MS.gene010305:intron 25.0%
!!! TACGGACATTAGTTTTTTTT+TGG + chr5.4:47452248-47452267 MS.gene010305:intron 25.0%
!!! TCAAAAGTTTTGAATGACAA+GGG + chr5.4:47455258-47455277 MS.gene010305:CDS 25.0%
!!! TCCTTTTAAGTATTTTGTCT+AGG - chr5.4:47453038-47453057 None:intergenic 25.0%
!!! TCTAGGACTTTTTTTTTTGA+AGG - chr5.4:47455023-47455042 None:intergenic 25.0%
!!! TTCAAAAGTTTTGAATGACA+AGG + chr5.4:47455257-47455276 MS.gene010305:CDS 25.0%
!!! TTCGATTTTGTTATCCTATA+TGG - chr5.4:47452839-47452858 None:intergenic 25.0%
AAAAATTAGTTGGAATTCGC+AGG + chr5.4:47454039-47454058 MS.gene010305:CDS 30.0%
AAAGTATACTATATCCCACA+AGG + chr5.4:47453507-47453526 MS.gene010305:intron 30.0%
AAGAATATGGAATTTGTAGG+GGG - chr5.4:47455063-47455082 None:intergenic 30.0%
ATACAAACATAGTCAATCCT+TGG + chr5.4:47454955-47454974 MS.gene010305:intron 30.0%
CATGAAAACAACAGAATCTT+TGG - chr5.4:47454003-47454022 None:intergenic 30.0%
GAAGAATATGGAATTTGTAG+GGG - chr5.4:47455064-47455083 None:intergenic 30.0%
GAGAAGAATATGGAATTTGT+AGG - chr5.4:47455066-47455085 None:intergenic 30.0%
GAGTTACCTAATTCAACAAT+GGG + chr5.4:47455147-47455166 MS.gene010305:CDS 30.0%
GGAATAGACAATATCTAGTT+AGG + chr5.4:47453117-47453136 MS.gene010305:intron 30.0%
GTAATGATCATAAAGACACT+GGG - chr5.4:47453577-47453596 None:intergenic 30.0%
GTGAACTTTAAATTTGAGTG+AGG - chr5.4:47452942-47452961 None:intergenic 30.0%
GTGGGATATAGTATACTTTA+GGG - chr5.4:47453506-47453525 None:intergenic 30.0%
TACAAATCATCATCCAAAAC+TGG - chr5.4:47452651-47452670 None:intergenic 30.0%
TATTGAGGAACAGTAATTGA+CGG - chr5.4:47455088-47455107 None:intergenic 30.0%
TCTGCCAGAAAAAAATTAGT+TGG + chr5.4:47454029-47454048 MS.gene010305:CDS 30.0%
TGTGGGATATAGTATACTTT+AGG - chr5.4:47453507-47453526 None:intergenic 30.0%
TGTTTGATAAACATGGTTGT+CGG + chr5.4:47452719-47452738 MS.gene010305:intron 30.0%
TTATCATAGGTTAATTGGGA+TGG + chr5.4:47454915-47454934 MS.gene010305:intron 30.0%
! ACATTTGGAACTTATCCTAT+AGG - chr5.4:47454599-47454618 None:intergenic 30.0%
! AGGTATAGTTCATTTAGAAC+TGG + chr5.4:47453137-47453156 MS.gene010305:intron 30.0%
! ATGGACTTAATTTCCAGTTT+TGG + chr5.4:47452635-47452654 MS.gene010305:intron 30.0%
! GTTTGATAATTGTGTTGAAG+TGG + chr5.4:47454468-47454487 MS.gene010305:intron 30.0%
! TTCATTTAGAACTGGATGTA+CGG + chr5.4:47453145-47453164 MS.gene010305:intron 30.0%
!! TATACTTTAGGGTGAATCTT+TGG - chr5.4:47453495-47453514 None:intergenic 30.0%
!!! TGGATTTTGAGATTTAAGTC+CGG + chr5.4:47453443-47453462 MS.gene010305:intron 30.0%
AAACACTCCTATTGCTAAGT+AGG + chr5.4:47454748-47454767 MS.gene010305:intron 35.0%
AACGACTAAACAAGAGAAGA+GGG + chr5.4:47452414-47452433 MS.gene010305:intron 35.0%
AAGGATCCCATTGTTGAATT+AGG - chr5.4:47455156-47455175 None:intergenic 35.0%
AAGGCATATTATCAGCCTAA+GGG + chr5.4:47454305-47454324 MS.gene010305:CDS 35.0%
AATCCATCATCGTATTTGTC+AGG - chr5.4:47453073-47453092 None:intergenic 35.0%
ACTCCTACATAGCAATGAAA+AGG - chr5.4:47455131-47455150 None:intergenic 35.0%
ACTTCGTAGATTCTTCTGTT+TGG + chr5.4:47454553-47454572 MS.gene010305:intron 35.0%
AGAATATGGAATTTGTAGGG+GGG - chr5.4:47455062-47455081 None:intergenic 35.0%
AGACGAGTCTTCAAATTCAA+AGG + chr5.4:47454286-47454305 MS.gene010305:CDS 35.0%
AGTCCATCTTAGATTTCATG+AGG - chr5.4:47452622-47452641 None:intergenic 35.0%
ATGATTCCATGAAGATTGGT+TGG + chr5.4:47454228-47454247 MS.gene010305:CDS 35.0%
ATTATCCAACAGCTAGGAAA+TGG + chr5.4:47454174-47454193 MS.gene010305:CDS 35.0%
ATTCTTCCAATGTCCCTAAT+TGG + chr5.4:47454351-47454370 MS.gene010305:CDS 35.0%
CTCCTACATAGCAATGAAAA+GGG - chr5.4:47455130-47455149 None:intergenic 35.0%
GAAAAATCAGAGATCGATCA+GGG + chr5.4:47452494-47452513 MS.gene010305:intron 35.0%
GGAGTTACCTAATTCAACAA+TGG + chr5.4:47455146-47455165 MS.gene010305:intron 35.0%
GGTAATGATCATAAAGACAC+TGG - chr5.4:47453578-47453597 None:intergenic 35.0%
GGTGTCTTAGGTCAAAAATT+GGG + chr5.4:47452536-47452555 MS.gene010305:intron 35.0%
GTAATTGACGGAGAAGAATA+TGG - chr5.4:47455076-47455095 None:intergenic 35.0%
GTAGATGATTCCATGAAGAT+TGG + chr5.4:47454224-47454243 MS.gene010305:CDS 35.0%
GTCCATCTTAGATTTCATGA+GGG - chr5.4:47452621-47452640 None:intergenic 35.0%
GTGTCTTAGGTCAAAAATTG+GGG + chr5.4:47452537-47452556 MS.gene010305:intron 35.0%
TAACGACTAAACAAGAGAAG+AGG + chr5.4:47452413-47452432 MS.gene010305:intron 35.0%
TAGTTGCAAATTAGCCAAAG+CGG + chr5.4:47452693-47452712 MS.gene010305:intron 35.0%
TATCAGAATCCAACCATGTT+TGG - chr5.4:47455182-47455201 None:intergenic 35.0%
TCAAGATCCTACTTAGCAAT+AGG - chr5.4:47454758-47454777 None:intergenic 35.0%
TGAAAAATCAGAGATCGATC+AGG + chr5.4:47452493-47452512 MS.gene010305:intron 35.0%
TGAAATTCATGCATAATGGC+AGG - chr5.4:47453323-47453342 None:intergenic 35.0%
TGGTGTCTTAGGTCAAAAAT+TGG + chr5.4:47452535-47452554 MS.gene010305:intron 35.0%
TTCCCTCATGAAATCTAAGA+TGG + chr5.4:47452616-47452635 MS.gene010305:intron 35.0%
TTGTGTATTATCCAACAGCT+AGG + chr5.4:47454168-47454187 MS.gene010305:CDS 35.0%
TTTATCAAACAATCCCGCTT+TGG - chr5.4:47452710-47452729 None:intergenic 35.0%
TTTATTCTTTCACACCACAC+TGG - chr5.4:47453178-47453197 None:intergenic 35.0%
! AAAGGCATATTATCAGCCTA+AGG + chr5.4:47454304-47454323 MS.gene010305:CDS 35.0%
! GAAATGGTGTGATTTTGTGA+TGG + chr5.4:47454190-47454209 MS.gene010305:CDS 35.0%
! GCATAATGGCAGGATTTTAA+AGG - chr5.4:47453313-47453332 None:intergenic 35.0%
! TGATTCCATGAAGATTGGTT+GGG + chr5.4:47454229-47454248 MS.gene010305:CDS 35.0%
! TTCCCTTTTCATTGCTATGT+AGG + chr5.4:47455125-47455144 MS.gene010305:intron 35.0%
!! CAAATACGATGATGGATTGA+AGG + chr5.4:47453075-47453094 MS.gene010305:intron 35.0%
!! CGATTCTAAAATGTTGGAGA+TGG - chr5.4:47454659-47454678 None:intergenic 35.0%
!! TGTTGTGAGAGTTTTGACAT+AGG - chr5.4:47453790-47453809 None:intergenic 35.0%
!!! CTTCTTTTGGGATTCTACTA+TGG + chr5.4:47453383-47453402 MS.gene010305:intron 35.0%
!!! GATTCTGATACTTTTTCAGC+TGG + chr5.4:47455192-47455211 MS.gene010305:CDS 35.0%
!!! TGATTTTGTGATGGATGCTA+AGG + chr5.4:47454199-47454218 MS.gene010305:CDS 35.0%
AAACATAGTCAATCCTTGGC+AGG + chr5.4:47454959-47454978 MS.gene010305:intron 40.0%
AAACTCAGTAGACTACGTAC+TGG + chr5.4:47453942-47453961 MS.gene010305:CDS 40.0%
AATGTGCCAATTAGGGACAT+TGG - chr5.4:47454360-47454379 None:intergenic 40.0%
ACCTCAAGAATGTGCCAATT+AGG - chr5.4:47454368-47454387 None:intergenic 40.0%
ACCTTAAAAGCCAAGAATGG+GGG + chr5.4:47453907-47453926 MS.gene010305:CDS 40.0%
AGATTCCCAACCAATCTTCA+TGG - chr5.4:47454237-47454256 None:intergenic 40.0%
AGGCATATTATCAGCCTAAG+GGG + chr5.4:47454306-47454325 MS.gene010305:CDS 40.0%
AGTTGCAAATTAGCCAAAGC+GGG + chr5.4:47452694-47452713 MS.gene010305:intron 40.0%
ATAGCAATGAAAAGGGAAGC+TGG - chr5.4:47455123-47455142 None:intergenic 40.0%
ATCCTTGAACCAAACATGGT+TGG + chr5.4:47455170-47455189 MS.gene010305:CDS 40.0%
ATGCCTGACAAATACGATGA+TGG + chr5.4:47453067-47453086 MS.gene010305:intron 40.0%
CAATCAAAAATTCGGCAGAG+AGG - chr5.4:47452475-47452494 None:intergenic 40.0%
CAGGAATTTAACTGAGAGTG+CGG + chr5.4:47454100-47454119 MS.gene010305:CDS 40.0%
CATGTTCCAAATGACCTTGT+GGG - chr5.4:47453524-47453543 None:intergenic 40.0%
CCTCAAGAATGTGCCAATTA+GGG - chr5.4:47454367-47454386 None:intergenic 40.0%
CGACCTTAAAAGCCAAGAAT+GGG + chr5.4:47453905-47453924 MS.gene010305:CDS 40.0%
CTATATCCCACAAGGTCATT+TGG + chr5.4:47453515-47453534 MS.gene010305:intron 40.0%
GAAATGATGCATGGAAAGGA+TGG - chr5.4:47453603-47453622 None:intergenic 40.0%
GACCTTAAAAGCCAAGAATG+GGG + chr5.4:47453906-47453925 MS.gene010305:CDS 40.0%
GACTTTACCAAGTCAAGCTT+TGG - chr5.4:47453867-47453886 None:intergenic 40.0%
GATCTTTCCAAAGCTTGACT+TGG + chr5.4:47453857-47453876 MS.gene010305:CDS 40.0%
GCGGGATTGTTTGATAAACA+TGG + chr5.4:47452712-47452731 MS.gene010305:intron 40.0%
GGGAATGGTATATCTAGTGA+AGG - chr5.4:47455002-47455021 None:intergenic 40.0%
GGTCGAATGGAATAGTGAAA+TGG + chr5.4:47452753-47452772 MS.gene010305:intron 40.0%
TAGTCTACTGAGTTTCACGT+AGG - chr5.4:47453937-47453956 None:intergenic 40.0%
TCTGACACAGAGCTATACAT+TGG + chr5.4:47455330-47455349 MS.gene010305:CDS 40.0%
TGGATTGAAGGAAAGGATGA+TGG + chr5.4:47453087-47453106 MS.gene010305:intron 40.0%
TTTCATCGGGAACAGTACAA+TGG + chr5.4:47455287-47455306 MS.gene010305:CDS 40.0%
TTTCCATGCATCATTTCAGC+CGG + chr5.4:47453606-47453625 MS.gene010305:intron 40.0%
TTTGAATGCAGTGGAATTGG+CGG + chr5.4:47454124-47454143 MS.gene010305:CDS 40.0%
! AAACCTGTCATTTGACGAAG+AGG + chr5.4:47453241-47453260 MS.gene010305:intron 40.0%
! AACCTGTCATTTGACGAAGA+GGG + chr5.4:47453242-47453261 MS.gene010305:intron 40.0%
! ATCCAACCATGTTTGGTTCA+AGG - chr5.4:47455175-47455194 None:intergenic 40.0%
! ATGAAGATTGGTTGGGAATC+TGG + chr5.4:47454236-47454255 MS.gene010305:CDS 40.0%
!! AAGCTAGCTTTGTGTCCTAT+AGG + chr5.4:47454581-47454600 MS.gene010305:intron 40.0%
!! ACGATGATGGATTGAAGGAA+AGG + chr5.4:47453080-47453099 MS.gene010305:intron 40.0%
!! AGTGAGAGCATCAACAAATC+CGG - chr5.4:47453628-47453647 None:intergenic 40.0%
!! GGAAAGGATGATGGATTGAA+AGG + chr5.4:47453096-47453115 MS.gene010305:intron 40.0%
!! GTTTTGAATGACAAGGGTGA+TGG + chr5.4:47455264-47455283 MS.gene010305:CDS 40.0%
!!! CCATTCTTGGCTTTTAAGGT+CGG - chr5.4:47453907-47453926 None:intergenic 40.0%
!!! GGTTTTGAATGCAGTGGAAT+TGG + chr5.4:47454121-47454140 MS.gene010305:CDS 40.0%
AATCCGGCTGAAATGATGCA+TGG - chr5.4:47453612-47453631 None:intergenic 45.0%
ACAGTAGAGATTGTCCCCTT+AGG - chr5.4:47454323-47454342 None:intergenic 45.0%
AGTACAATGGCAGGGTTTAG+TGG + chr5.4:47455300-47455319 MS.gene010305:CDS 45.0%
ATCAAGTCAGCGCATTCATG+AGG - chr5.4:47453840-47453859 None:intergenic 45.0%
CCCTAATTGGCACATTCTTG+AGG + chr5.4:47454364-47454383 MS.gene010305:CDS 45.0%
CCGACCTTAAAAGCCAAGAA+TGG + chr5.4:47453904-47453923 MS.gene010305:CDS 45.0%
GAAGAACACTGAGCATGTCT+AGG - chr5.4:47455040-47455059 None:intergenic 45.0%
GCATGTTCCAAATGACCTTG+TGG - chr5.4:47453525-47453544 None:intergenic 45.0%
GGCTGAAATGATGCATGGAA+AGG - chr5.4:47453607-47453626 None:intergenic 45.0%
GTTGGAGATGGAGACTCTAA+TGG - chr5.4:47454647-47454666 None:intergenic 45.0%
TACAGATAAATGGTCGTGCC+TGG - chr5.4:47455229-47455248 None:intergenic 45.0%
TACCCTCTTCGTCAAATGAC+AGG - chr5.4:47453247-47453266 None:intergenic 45.0%
TCACACCATTTCCTAGCTGT+TGG - chr5.4:47454182-47454201 None:intergenic 45.0%
TCTTCTTGGCCAGGAATAAC+AGG - chr5.4:47453747-47453766 None:intergenic 45.0%
TGATGCATGGAAAGGATGGA+CGG - chr5.4:47453599-47453618 None:intergenic 45.0%
TGGGATCCTTGAACCAAACA+TGG + chr5.4:47455166-47455185 MS.gene010305:CDS 45.0%
TGTTGATGCTCTCACTGATG+AGG + chr5.4:47453632-47453651 MS.gene010305:CDS 45.0%
TGTTTCCATCGTCGTCTTCT+TGG - chr5.4:47453761-47453780 None:intergenic 45.0%
TTTCACCTGTTTCAGCTGCA+GGG - chr5.4:47454076-47454095 None:intergenic 45.0%
! ACAAGGGTGATGGTTTCATC+GGG + chr5.4:47455274-47455293 MS.gene010305:CDS 45.0%
! GACAAGGGTGATGGTTTCAT+CGG + chr5.4:47455273-47455292 MS.gene010305:CDS 45.0%
! GGATTTTGCTTCAGGTCGAA+TGG + chr5.4:47452740-47452759 MS.gene010305:intron 45.0%
! GGCAAGAAGTCAGCTGATTT+AGG - chr5.4:47455360-47455379 None:intergenic 45.0%
! TGGTTGTCGGATTTTGCTTC+AGG + chr5.4:47452732-47452751 MS.gene010305:intron 45.0%
!! ACCCCCATTCTTGGCTTTTA+AGG - chr5.4:47453911-47453930 None:intergenic 45.0%
!! CTTGACTCGGAACCAAAATG+AGG + chr5.4:47452437-47452456 MS.gene010305:intron 45.0%
!!! ACTTTTTCAGCTGGCATGCA+GGG + chr5.4:47455201-47455220 MS.gene010305:CDS 45.0%
!!! TACTTTTTCAGCTGGCATGC+AGG + chr5.4:47455200-47455219 MS.gene010305:CDS 45.0%
AAAAGGGAAGCTGGTGGTAG+AGG - chr5.4:47455114-47455133 None:intergenic 50.0%
AACTTCCCTGCAGCTGAAAC+AGG + chr5.4:47454068-47454087 MS.gene010305:CDS 50.0%
AGGAGAAGGAGGAGGATCTT+GGG - chr5.4:47453691-47453710 None:intergenic 50.0%
ATCAGAGATCGATCAGGGTC+AGG + chr5.4:47452499-47452518 MS.gene010305:intron 50.0%
ATCGGGAACAGTACAATGGC+AGG + chr5.4:47455291-47455310 MS.gene010305:CDS 50.0%
CAAGAGAAGAGGGCTTGACT+CGG + chr5.4:47452424-47452443 MS.gene010305:intron 50.0%
CATGCATGTCGTTCCCCTAA+CGG + chr5.4:47453540-47453559 MS.gene010305:intron 50.0%
CTGAAACAGGTGAAAGAGGC+AGG + chr5.4:47454081-47454100 MS.gene010305:CDS 50.0%
CTTTCACCTGTTTCAGCTGC+AGG - chr5.4:47454077-47454096 None:intergenic 50.0%
GACAGGTTTGTACTCGTGAC+CGG - chr5.4:47453230-47453249 None:intergenic 50.0%
GCAATGAAAAGGGAAGCTGG+TGG - chr5.4:47455120-47455139 None:intergenic 50.0%
GCAGCTGAAACAGGTGAAAG+AGG + chr5.4:47454077-47454096 MS.gene010305:CDS 50.0%
GGAGATTGTGACACCGTTAG+GGG - chr5.4:47453556-47453575 None:intergenic 50.0%
GGGAGATTGTGACACCGTTA+GGG - chr5.4:47453557-47453576 None:intergenic 50.0%
TCGGGAACAGTACAATGGCA+GGG + chr5.4:47455292-47455311 MS.gene010305:CDS 50.0%
TCTTGGCCAGGAATAACAGG+AGG - chr5.4:47453744-47453763 None:intergenic 50.0%
TGAACAGGCTGTGTTTGGAC+TGG + chr5.4:47452130-47452149 MS.gene010305:intron 50.0%
TGAATTCGACGAGCGTGAAC+AGG + chr5.4:47452115-47452134 MS.gene010305:CDS 50.0%
TGGGAGATTGTGACACCGTT+AGG - chr5.4:47453558-47453577 None:intergenic 50.0%
TTGCAAGCTTCAACCTGCCA+AGG - chr5.4:47454975-47454994 None:intergenic 50.0%
! GGAATTGGCGGACAAGAACA+TGG + chr5.4:47454136-47454155 MS.gene010305:CDS 50.0%
! TCAGTAGACTACGTACTGGC+TGG + chr5.4:47453946-47453965 MS.gene010305:CDS 50.0%
!!! GAGTGCGGTTTTGAATGCAG+TGG + chr5.4:47454115-47454134 MS.gene010305:CDS 50.0%
ACGCGTGTCAGTGGTGTCTT+AGG + chr5.4:47452524-47452543 MS.gene010305:intron 55.0%
ATAACAGGAGGAGGAGGAGG+AGG - chr5.4:47453732-47453751 None:intergenic 55.0%
CCAGGAATAACAGGAGGAGG+AGG - chr5.4:47453738-47453757 None:intergenic 55.0%
CCTCCTCCTCCTGTTATTCC+TGG + chr5.4:47453735-47453754 MS.gene010305:CDS 55.0%
GAGCGTGAACAGGCTGTGTT+TGG + chr5.4:47452125-47452144 MS.gene010305:intron 55.0%
GAGGAGAAGGAGGAGGATCT+TGG - chr5.4:47453692-47453711 None:intergenic 55.0%
GGAATAACAGGAGGAGGAGG+AGG - chr5.4:47453735-47453754 None:intergenic 55.0%
GGAGGATCTTGGGCAGTTAC+CGG - chr5.4:47453681-47453700 None:intergenic 55.0%
TACCGGAGTGAGGAGCAGTT+TGG - chr5.4:47453664-47453683 None:intergenic 55.0%
TGGCCAGGAATAACAGGAGG+AGG - chr5.4:47453741-47453760 None:intergenic 55.0%
TGGTGGTAGAGGCGGTATTG+AGG - chr5.4:47455103-47455122 None:intergenic 55.0%
TGTACGGTGAAGAGCCAGTG+TGG + chr5.4:47453161-47453180 MS.gene010305:intron 55.0%
AGGGAAGCTGGTGGTAGAGG+CGG - chr5.4:47455111-47455130 None:intergenic 60.0%
CCATCGTCGTCTTCTTGGCC+AGG - chr5.4:47453756-47453775 None:intergenic 60.0%
CCTGGCCAAGAAGACGACGA+TGG + chr5.4:47453753-47453772 MS.gene010305:CDS 60.0%
CGCCAAACTGCTCCTCACTC+CGG + chr5.4:47453659-47453678 MS.gene010305:CDS 60.0%
CGTAGGTGCACCCCCATTCT+TGG - chr5.4:47453920-47453939 None:intergenic 60.0%
CTTGGGCAGTTACCGGAGTG+AGG - chr5.4:47453674-47453693 None:intergenic 60.0%
ACAGGAGGAGGAGGAGGAGG+AGG - chr5.4:47453729-47453748 None:intergenic 65.0%
GGAGGAGGAGGAGAAGGAGG+AGG - chr5.4:47453699-47453718 None:intergenic 65.0%
GGAGGAGGAGGAGGAGAAGG+AGG - chr5.4:47453702-47453721 None:intergenic 65.0%
GGAGGAGGAGGAGGAGGAGA+AGG - chr5.4:47453705-47453724 None:intergenic 65.0%
GGTCAGGTGACGCGTGTCAG+TGG + chr5.4:47452515-47452534 MS.gene010305:intron 65.0%
CAGCTGGCATGCAGGGAGCC+AGG + chr5.4:47455208-47455227 MS.gene010305:CDS 70.0%
GGAGGAGGAGGAGGAGGAGG+AGG - chr5.4:47453708-47453727 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 47452105 47455386 47452105 ID=MS.gene010305
chr5.4 mRNA 47452105 47455386 47452105 ID=MS.gene010305.t1;Parent=MS.gene010305
chr5.4 exon 47452105 47452141 47452105 ID=MS.gene010305.t1.exon1;Parent=MS.gene010305.t1
chr5.4 CDS 47452105 47452141 47452105 ID=cds.MS.gene010305.t1;Parent=MS.gene010305.t1
chr5.4 exon 47453625 47454385 47453625 ID=MS.gene010305.t1.exon2;Parent=MS.gene010305.t1
chr5.4 CDS 47453625 47454385 47453625 ID=cds.MS.gene010305.t1;Parent=MS.gene010305.t1
chr5.4 exon 47455147 47455386 47455147 ID=MS.gene010305.t1.exon3;Parent=MS.gene010305.t1
chr5.4 CDS 47455147 47455386 47455147 ID=cds.MS.gene010305.t1;Parent=MS.gene010305.t1
Gene Sequence

>MS.gene010305

ATGGAGCGTGTGAATTCGACGAGCGTGAACAGGCTGTGTTTGGACTGGAATTGCTTGTGTGACAGTTTTTTTTTTTTTTTTTATCAACTAAAAAAATATAATAATACAAATAACAAAGGAATGAAAATAAAAAAAGATAACTATACGGACATTAGTTTTTTTTTGGGACTTATCTTAAAGAAAAAAAAAGGAATCAATTAATTAAAAAAAAGGAATCAATTAATTAAAAAAAATGAATGACTAATTAAAATAAAAAATGACTAATAAGAATAAAATCAAAATTAATTAAACAAAATAAAAGATGGAAATAACGACTAAACAAGAGAAGAGGGCTTGACTCGGAACCAAAATGAGGTATTTTAAGATACCTCTCTGCCGAATTTTTGATTGAAAAATCAGAGATCGATCAGGGTCAGGTGACGCGTGTCAGTGGTGTCTTAGGTCAAAAATTGGGGTATGACAATTATCATCTATTTTTTTTCCTTCATTTATCAAAACAAAATCTATATTATTCCCTCATGAAATCTAAGATGGACTTAATTTCCAGTTTTGGATGATGATTTGTAGTTTACTTTTTCGCGCAGTCGATAGTTGCAAATTAGCCAAAGCGGGATTGTTTGATAAACATGGTTGTCGGATTTTGCTTCAGGTCGAATGGAATAGTGAAATGGAAAATCGTAAAATCACAATCAAAATCTTGAGATTTTACTCAACTACTTTTGTACAATAGTCCATATAGGATAACAAAATCGAAACTCGTAAAATCGAATCAAAATTAATGGATTCTACCTAAACAAAAATAATGTTAAATATATGTTATAAATTGCATGTAATCCTCACTCAAATTTAAAGTTCACAAAATAATTATACATAAATAACACAAAGTCTAGGTGTCAAATATTATTTCGTAGTTGTAATAATGCTAAACAACCTAGACAAAATACTTAAAAGGAAAATCTTAGATGCCTGACAAATACGATGATGGATTGAAGGAAAGGATGATGGATTGAAAGGAATAGACAATATCTAGTTAGGTATAGTTCATTTAGAACTGGATGTACGGTGAAGAGCCAGTGTGGTGTGAAAGAATAAAAAAACTTGGTCTGTTATGTATTTATAGAACCGGTCACGAGTACAAACCTGTCATTTGACGAAGAGGGTAAAAATTGATACGTATAAAAAGAATGGACAGAATCTTTTAAAATCCTTTAAAATCCTGCCATTATGCATGAATTTCATAATTTTCTGCGATTTTGATGCAATTTTACAAGGATTTTTCTTCTTTTGGGATTCTACTATGGATTTGAATCATTGAAGATGAATAAAGTCACAAAATCATGGATTTTGAGATTTAAGTCCGGATTTTGACAACAATACATACAACATTCCAAAGATTCACCCTAAAGTATACTATATCCCACAAGGTCATTTGGAACATGCATGTCGTTCCCCTAACGGTGTCACAATCTCCCAGTGTCTTTATGATCATTACCGTCCATCCTTTCCATGCATCATTTCAGCCGGATTTGTTGATGCTCTCACTGATGAGGTTTTCGCCAAACTGCTCCTCACTCCGGTAACTGCCCAAGATCCTCCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTGTTATTCCTGGCCAAGAAGACGACGATGGAAACAATCTTTCCTATGTCAAAACTCTCACAACAACTGATACTAAATCTGTATTCAATATACCTCATGAATGCGCTGACTTGATCTTTCCAAAGCTTGACTTGGTAAAGTCTCAAAACATCACTGTCACCGACCTTAAAAGCCAAGAATGGGGGTGCACCTACGTGAAACTCAGTAGACTACGTACTGGCTGGTCTCACTTTGTGAAAGAGAAGAAACTCGTCGCCAAAGATTCTGTTGTTTTCATGAAAAACTCTGCCAGAAAAAAATTAGTTGGAATTCGCAGGAACACTAACTTCCCTGCAGCTGAAACAGGTGAAAGAGGCAGGAATTTAACTGAGAGTGCGGTTTTGAATGCAGTGGAATTGGCGGACAAGAACATGGAGTTTGAAGTTGTGTATTATCCAACAGCTAGGAAATGGTGTGATTTTGTGATGGATGCTAAGGTTGTAGATGATTCCATGAAGATTGGTTGGGAATCTGGAATTAGAGTCAAACTTACGTTGAAGAAAGACGAGTCTTCAAATTCAAAGGCATATTATCAGCCTAAGGGGACAATCTCTACTGTCTTTAATTATTCTTCCAATGTCCCTAATTGGCACATTCTTGAGGTGCATATGCTTTCTTATTTTAATTGCTTATTGTTATCAAGTTTATAGTTTTATTAAAGATGAATCCATAATTTCATGATTTGTTTGATAATTGTGTTGAAGTGGATACATGATTCATTTAGATGTTGAAACAATAATTAGATGAAATAGATATATAAAATTTTGAGACTTCGTAGATTCTTCTGTTTGGAATGTAAGCTAGCTTTGTGTCCTATAGGATAAGTTCCAAATGTAATTCTAAAACATTGAGACAGAAAACCATTAGAGTCTCCATCTCCAACATTTTAGAATCGATTGTTTGTATGACTTTACTTGCTTCAATAATGATAATCTTTAAGAACCTTTTAAGCATTTCTCATTGTAAACACTCCTATTGCTAAGTAGGATCTTGATTTTGACTCATGTTACCAATTGATAAGAAACTTTTCATGTGTAAATATATATATATATATATACACACACACACACACACACTAAGCTATCAAATATTTCAAATGATTGATATTGATTCTTACCATTTTTCCCTTCTTTATCATAGGTTAATTGGGATGGACCTAAAATCTTGCAAAATACAAACATAGTCAATCCTTGGCAGGTTGAAGCTTGCAACATACCTTCACTAGATATACCATTCCCTTCAAAAAAAAAAGTCCTAGACATGCTCAGTGTTCTTCCCCCCTACAAATTCCATATTCTTCTCCGTCAATTACTGTTCCTCAATACCGCCTCTACCACCAGCTTCCCTTTTCATTGCTATGTAGGAGTTACCTAATTCAACAATGGGATCCTTGAACCAAACATGGTTGGATTCTGATACTTTTTCAGCTGGCATGCAGGGAGCCAGGCACGACCATTTATCTGTATCAGATTCTTCAAAAGTTTTGAATGACAAGGGTGATGGTTTCATCGGGAACAGTACAATGGCAGGGTTTAGTGGTACTTTGTCTGACACAGAGCTATACATTGGCAGTCCTAAATCAGCTGACTTCTTGCCTCAATGA
Protein sequence

>MS.gene010305.t1

MERVNSTSVNRLSGFVDALTDEVFAKLLLTPVTAQDPPPSPPPPPPPPPPPPPVIPGQEDDDGNNLSYVKTLTTTDTKSVFNIPHECADLIFPKLDLVKSQNITVTDLKSQEWGCTYVKLSRLRTGWSHFVKEKKLVAKDSVVFMKNSARKKLVGIRRNTNFPAAETGERGRNLTESAVLNAVELADKNMEFEVVYYPTARKWCDFVMDAKVVDDSMKIGWESGIRVKLTLKKDESSNSKAYYQPKGTISTVFNYSSNVPNWHILEELPNSTMGSLNQTWLDSDTFSAGMQGARHDHLSVSDSSKVLNDKGDGFIGNSTMAGFSGTLSDTELYIGSPKSADFLPQ