Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010323.t1 | AES99247.1 | 38.9 | 306 | 170 | 7 | 12 | 302 | 6 | 309 | 8.10E-50 | 207.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010323.t1 | G7K1P9 | 38.9 | 306 | 170 | 7 | 12 | 302 | 6 | 309 | 5.9e-50 | 207.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene010323.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010323.t1 | MTR_5g078270 | 38.305 | 295 | 169 | 5 | 19 | 302 | 17 | 309 | 4.84e-61 | 196 |
| MS.gene010323.t1 | MTR_0010s0290 | 34.576 | 295 | 173 | 6 | 19 | 302 | 39 | 324 | 4.43e-52 | 174 |
| MS.gene010323.t1 | MTR_0010s0320 | 33.115 | 305 | 180 | 7 | 9 | 302 | 2 | 293 | 1.59e-48 | 164 |
| MS.gene010323.t1 | MTR_1g054480 | 34.035 | 285 | 175 | 5 | 22 | 302 | 19 | 294 | 4.82e-44 | 152 |
| MS.gene010323.t1 | MTR_0010s0310 | 34.191 | 272 | 126 | 6 | 22 | 291 | 20 | 240 | 1.12e-34 | 126 |
| MS.gene010323.t1 | MTR_1g050480 | 31.174 | 247 | 125 | 5 | 12 | 257 | 8 | 210 | 1.20e-23 | 99.0 |
| MS.gene010323.t1 | MTR_2g012700 | 30.189 | 106 | 73 | 1 | 196 | 300 | 14 | 119 | 6.09e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 91 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGAACGACGTACCATATTT+TGG | 0.218433 | 5.4:-10150749 | MS.gene010323:CDS |
| CATCTGATAATTGTAGAAAT+TGG | 0.239747 | 5.4:+10150555 | None:intergenic |
| CCGAGGTATGTTGATGTTAT+TGG | 0.249280 | 5.4:-10150665 | MS.gene010323:CDS |
| TTTAAGATCCTTACTTGTTC+AGG | 0.287517 | 5.4:+10151118 | None:intergenic |
| AGTCTTCAATCTTAGACTTT+TGG | 0.299655 | 5.4:+10150158 | None:intergenic |
| TATATGGTTGACTACAGATT+TGG | 0.309041 | 5.4:+10150308 | None:intergenic |
| TTCAATATGCGAATTGTTGA+TGG | 0.313877 | 5.4:-10150776 | MS.gene010323:CDS |
| TCCAATGGAGTTGACCCTTC+AGG | 0.316164 | 5.4:-10151172 | MS.gene010323:CDS |
| TTCCAATCAACGACAAATTC+AGG | 0.326574 | 5.4:+10150980 | None:intergenic |
| CTCCTGAATTTGTCGTTGAT+TGG | 0.331151 | 5.4:-10150982 | MS.gene010323:CDS |
| GGATAATGGAATCCAAAATA+TGG | 0.331913 | 5.4:+10150737 | None:intergenic |
| ATTTCCAGCCGGATCTTTGA+TGG | 0.339598 | 5.4:+10150928 | None:intergenic |
| ATATGGTTGACTACAGATTT+GGG | 0.342902 | 5.4:+10150309 | None:intergenic |
| CTCCAATGGAACTCAATGTT+AGG | 0.348995 | 5.4:-10150104 | MS.gene010323:CDS |
| CTCGGATTGACTTGAAGGTT+TGG | 0.372952 | 5.4:+10150683 | None:intergenic |
| GGCCGACCAGAACATAGTTT+TGG | 0.383031 | 5.4:-10150277 | MS.gene010323:CDS |
| CATACCTCGGATTGACTTGA+AGG | 0.392440 | 5.4:+10150678 | None:intergenic |
| CATAACATTGCAAACTCAAA+AGG | 0.394081 | 5.4:+10150617 | None:intergenic |
| GGTCGGCCACAAAAGGTATA+TGG | 0.404072 | 5.4:+10150292 | None:intergenic |
| GGGAGGAAAAGACCACCGTC+AGG | 0.421856 | 5.4:+10150638 | None:intergenic |
| CAACAATTCGCATATTGAAC+TGG | 0.435687 | 5.4:+10150780 | None:intergenic |
| TCACTTCGGCCCTTAGCAAC+TGG | 0.436275 | 5.4:+10150458 | None:intergenic |
| CCAATGGAGTTGACCCTTCA+GGG | 0.452496 | 5.4:-10151171 | MS.gene010323:CDS |
| CACAGTACCTTGCAATAATC+CGG | 0.462888 | 5.4:+10150852 | None:intergenic |
| TCCCTACTCCACTTTCCAAC+GGG | 0.468155 | 5.4:-10151584 | MS.gene010323:intron |
| TGTAACCAGGCCAGTTGCTA+AGG | 0.483856 | 5.4:-10150468 | MS.gene010323:CDS |
| TGCTAAGGGCCGAAGTGACT+TGG | 0.484950 | 5.4:-10150453 | MS.gene010323:intron |
| ACCCTAACATTGAGTTCCAT+TGG | 0.485090 | 5.4:+10150102 | None:intergenic |
| CATCAACCAAAACTATGTTC+TGG | 0.486969 | 5.4:+10150271 | None:intergenic |
| TGAATTTGTCGTTGATTGGA+AGG | 0.487666 | 5.4:-10150978 | MS.gene010323:CDS |
| CAATTTACATAGGGAGTGGC+TGG | 0.490021 | 5.4:-10150191 | MS.gene010323:CDS |
| ATGTTCTGGTCGGCCACAAA+AGG | 0.492846 | 5.4:+10150285 | None:intergenic |
| CCCTGAAGGGTCAACTCCAT+TGG | 0.500515 | 5.4:+10151171 | None:intergenic |
| TCCAATGGAACTCAATGTTA+GGG | 0.501785 | 5.4:-10150103 | MS.gene010323:CDS |
| TGTCGGATCCATCAAAGATC+CGG | 0.506141 | 5.4:-10150936 | MS.gene010323:CDS |
| ATAATTGTAGAAATTGGATA+AGG | 0.509582 | 5.4:+10150561 | None:intergenic |
| ATGCGAATTGTTGATGGAGA+AGG | 0.509644 | 5.4:-10150770 | MS.gene010323:CDS |
| TTGACTTACCCGTTGGAAAG+TGG | 0.513614 | 5.4:+10151576 | None:intergenic |
| ATTCAGGAGGGATTTCAATA+CGG | 0.516187 | 5.4:+10150996 | None:intergenic |
| TTATGGATGGAAGAACTTAA+CGG | 0.519426 | 5.4:-10150599 | MS.gene010323:CDS |
| AAAGTGGTTGGTGCCCCTGA+AGG | 0.522492 | 5.4:+10151157 | None:intergenic |
| TCGGCCCTTAGCAACTGGCC+TGG | 0.525594 | 5.4:+10150463 | None:intergenic |
| TCGGAAGAAGCAATTTACAT+AGG | 0.532988 | 5.4:-10150201 | MS.gene010323:CDS |
| ATAACATTGCAAACTCAAAA+GGG | 0.541595 | 5.4:+10150618 | None:intergenic |
| CGGAAGAAGCAATTTACATA+GGG | 0.544470 | 5.4:-10150200 | MS.gene010323:CDS |
| GTCCACTGAAAGTCAAAAGC+AGG | 0.551689 | 5.4:+10150497 | None:intergenic |
| GTATCCATCGATACTTTGCA+TGG | 0.555610 | 5.4:+10150228 | None:intergenic |
| CGGATTATTGCAAGGTACTG+TGG | 0.558040 | 5.4:-10150851 | MS.gene010323:CDS |
| TAGTCAAGAATTACCTTCTG+CGG | 0.559691 | 5.4:+10150818 | None:intergenic |
| TGCGAATTGTTGATGGAGAA+GGG | 0.561259 | 5.4:-10150769 | MS.gene010323:CDS |
| GTCCCTACTCCACTTTCCAA+CGG | 0.564413 | 5.4:-10151585 | MS.gene010323:CDS |
| GGAGGAAAAGACCACCGTCA+GGG | 0.566388 | 5.4:+10150639 | None:intergenic |
| GAAGGTAATTCTTGACTACA+AGG | 0.567645 | 5.4:-10150813 | MS.gene010323:CDS |
| GAGGAAAAGACCACCGTCAG+GGG | 0.568166 | 5.4:+10150640 | None:intergenic |
| AACTGGCCTGGTTACATCCA+AGG | 0.574011 | 5.4:+10150475 | None:intergenic |
| ATATACCATGGTATCAAAAG+TGG | 0.579646 | 5.4:+10151141 | None:intergenic |
| GGATCCATCAAAGATCCGGC+TGG | 0.581763 | 5.4:-10150932 | MS.gene010323:CDS |
| AAGTGGTTGGTGCCCCTGAA+GGG | 0.581816 | 5.4:+10151158 | None:intergenic |
| CTAACATTGAGTTCCATTGG+AGG | 0.582212 | 5.4:+10150105 | None:intergenic |
| AAAAGTCTAAGATTGAAGAC+TGG | 0.584520 | 5.4:-10150156 | MS.gene010323:CDS |
| ACATGTTCATCAGAGGCGGC+CGG | 0.584533 | 5.4:-10150871 | MS.gene010323:CDS |
| TTGTCTGACATGTTCATCAG+AGG | 0.585532 | 5.4:-10150878 | MS.gene010323:CDS |
| AGGAAAAGACCACCGTCAGG+GGG | 0.587565 | 5.4:+10150641 | None:intergenic |
| AGATGAACATAATGAGACTT+CGG | 0.590070 | 5.4:-10150537 | MS.gene010323:CDS |
| TGGACTGGACAATCCTCCAA+TGG | 0.590635 | 5.4:-10150118 | MS.gene010323:CDS |
| GAAGCAATTTACATAGGGAG+TGG | 0.592040 | 5.4:-10150195 | MS.gene010323:CDS |
| TCTGACATGTTCATCAGAGG+CGG | 0.593190 | 5.4:-10150875 | MS.gene010323:CDS |
| ACCCGTTGGAAAGTGGAGTA+GGG | 0.595752 | 5.4:+10151583 | None:intergenic |
| TGGTTTCAATGAACCGCAGA+AGG | 0.596257 | 5.4:-10150831 | MS.gene010323:CDS |
| AGTGGACCTTGGATGTAACC+AGG | 0.598459 | 5.4:-10150481 | MS.gene010323:CDS |
| ATTCCCATGCAAAGTATCGA+TGG | 0.599282 | 5.4:-10150232 | MS.gene010323:CDS |
| TGAGTTTGCAATGTTATGGA+TGG | 0.599799 | 5.4:-10150612 | MS.gene010323:CDS |
| AGCATCGCTGTACAAAATGT+CGG | 0.608796 | 5.4:-10150953 | MS.gene010323:CDS |
| TATCCATCGATACTTTGCAT+GGG | 0.609143 | 5.4:+10150229 | None:intergenic |
| ACCATGGTATCAAAAGTGGT+TGG | 0.609782 | 5.4:+10151145 | None:intergenic |
| TACCCGTTGGAAAGTGGAGT+AGG | 0.614917 | 5.4:+10151582 | None:intergenic |
| AACCAAAACTATGTTCTGGT+CGG | 0.619760 | 5.4:+10150275 | None:intergenic |
| GTGTACTAACCAAGTCACTT+CGG | 0.625729 | 5.4:+10150444 | None:intergenic |
| CCAATAACATCAACATACCT+CGG | 0.630235 | 5.4:+10150665 | None:intergenic |
| GTAACCAGGCCAGTTGCTAA+GGG | 0.632798 | 5.4:-10150467 | MS.gene010323:CDS |
| TGCTTCAGTGAGACATGCGA+CGG | 0.648243 | 5.4:+10150076 | None:intergenic |
| GAGGCGGCCGGATTATTGCA+AGG | 0.655116 | 5.4:-10150859 | MS.gene010323:CDS |
| CAATCAACGACAAATTCAGG+AGG | 0.655933 | 5.4:+10150983 | None:intergenic |
| CAATGGAGTTGACCCTTCAG+GGG | 0.660593 | 5.4:-10151170 | MS.gene010323:CDS |
| CAAACCTTCAAGTCAATCCG+AGG | 0.662887 | 5.4:-10150682 | MS.gene010323:CDS |
| TATGGTTGACTACAGATTTG+GGG | 0.664603 | 5.4:+10150310 | None:intergenic |
| TACTTGTTCAGGATATACCA+TGG | 0.667959 | 5.4:+10151129 | None:intergenic |
| AATCAACGACAAATTCAGGA+GGG | 0.674016 | 5.4:+10150984 | None:intergenic |
| GGAAAGTGGAGTAGGGACCA+TGG | 0.684071 | 5.4:+10151590 | None:intergenic |
| AGTATCGATGGATACAACAT+CGG | 0.685684 | 5.4:-10150220 | MS.gene010323:CDS |
| ACATTGCAAACTCAAAAGGG+AGG | 0.696354 | 5.4:+10150621 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAATATATTTTGATGTA+GGG | + | chr5.4:10150139-10150158 | None:intergenic | 10.0% |
| !! | ATCATTAGAAAATTCAAAAA+AGG | + | chr5.4:10150195-10150214 | None:intergenic | 15.0% |
| !! | TTCAAAAAAGGAAATTATAT+TGG | + | chr5.4:10150183-10150202 | None:intergenic | 15.0% |
| !!! | CAAAAAATATATTTTGATGT+AGG | + | chr5.4:10150140-10150159 | None:intergenic | 15.0% |
| !!! | CTACATCAAAATATATTTTT+TGG | - | chr5.4:10150138-10150157 | MS.gene010323:CDS | 15.0% |
| !! | ATAATTGTAGAAATTGGATA+AGG | + | chr5.4:10151110-10151129 | None:intergenic | 20.0% |
| !! | ATATGTTTGTTTAAATATGC+AGG | + | chr5.4:10151321-10151340 | None:intergenic | 20.0% |
| !! | TAGCAAAATAATGATTAGAT+GGG | + | chr5.4:10150296-10150315 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTAGACAATCCAA+TGG | - | chr5.4:10150481-10150500 | MS.gene010323:CDS | 20.0% |
| !!! | CATTTGTTTTCATATATACT+AGG | - | chr5.4:10150231-10150250 | MS.gene010323:CDS | 20.0% |
| ! | ATAACATTGCAAACTCAAAA+GGG | + | chr5.4:10151053-10151072 | None:intergenic | 25.0% |
| ! | CATCTGATAATTGTAGAAAT+TGG | + | chr5.4:10151116-10151135 | None:intergenic | 25.0% |
| ! | GAAAACAAATGTAAAGAATG+TGG | + | chr5.4:10150222-10150241 | None:intergenic | 25.0% |
| ! | GTAGCAAAATAATGATTAGA+TGG | + | chr5.4:10150297-10150316 | None:intergenic | 25.0% |
| !! | ATCTTAGCATGAATATTTTC+AGG | + | chr5.4:10150955-10150974 | None:intergenic | 25.0% |
| !! | TTGTTTTCATATATACTAGG+AGG | - | chr5.4:10150234-10150253 | MS.gene010323:CDS | 25.0% |
| !!! | CATGAATATTTTCAGGATAA+TGG | + | chr5.4:10150948-10150967 | None:intergenic | 25.0% |
| AGATGAACATAATGAGACTT+CGG | - | chr5.4:10151131-10151150 | MS.gene010323:intron | 30.0% | |
| AGTGATTTATGTTCCATATG+TGG | - | chr5.4:10150382-10150401 | MS.gene010323:intron | 30.0% | |
| ATATACCATGGTATCAAAAG+TGG | + | chr5.4:10150530-10150549 | None:intergenic | 30.0% | |
| ATATGGTTGACTACAGATTT+GGG | + | chr5.4:10151362-10151381 | None:intergenic | 30.0% | |
| CATAACATTGCAAACTCAAA+AGG | + | chr5.4:10151054-10151073 | None:intergenic | 30.0% | |
| GTGATTTATGTTCCATATGT+GGG | - | chr5.4:10150383-10150402 | MS.gene010323:intron | 30.0% | |
| TATATGGTTGACTACAGATT+TGG | + | chr5.4:10151363-10151382 | None:intergenic | 30.0% | |
| TTATGGATGGAAGAACTTAA+CGG | - | chr5.4:10151069-10151088 | MS.gene010323:intron | 30.0% | |
| TTCAATATGCGAATTGTTGA+TGG | - | chr5.4:10150892-10150911 | MS.gene010323:CDS | 30.0% | |
| ! | AAAAGTCTAAGATTGAAGAC+TGG | - | chr5.4:10151512-10151531 | MS.gene010323:intron | 30.0% |
| ! | AGTCTTCAATCTTAGACTTT+TGG | + | chr5.4:10151513-10151532 | None:intergenic | 30.0% |
| ! | CAACACCATATCTAATCTTT+TGG | - | chr5.4:10150112-10150131 | MS.gene010323:CDS | 30.0% |
| ! | TAAGTAGTATAGTTGATGCT+TGG | - | chr5.4:10150408-10150427 | MS.gene010323:intron | 30.0% |
| ! | TTTAAGATCCTTACTTGTTC+AGG | + | chr5.4:10150553-10150572 | None:intergenic | 30.0% |
| !! | GGATAATGGAATCCAAAATA+TGG | + | chr5.4:10150934-10150953 | None:intergenic | 30.0% |
| !!! | CTTTTGAGTTTGCAATGTTA+TGG | - | chr5.4:10151052-10151071 | MS.gene010323:intron | 30.0% |
| AACCAAAACTATGTTCTGGT+CGG | + | chr5.4:10151396-10151415 | None:intergenic | 35.0% | |
| AATCAACGACAAATTCAGGA+GGG | + | chr5.4:10150687-10150706 | None:intergenic | 35.0% | |
| AGGGACCAAAAGATTAGATA+TGG | + | chr5.4:10150120-10150139 | None:intergenic | 35.0% | |
| ATACTACTTACACCCACATA+TGG | + | chr5.4:10150398-10150417 | None:intergenic | 35.0% | |
| ATCCCAAAAAAATTTCCAGC+CGG | + | chr5.4:10150754-10150773 | None:intergenic | 35.0% | |
| ATTCAGGAGGGATTTCAATA+CGG | + | chr5.4:10150675-10150694 | None:intergenic | 35.0% | |
| CAACAATTCGCATATTGAAC+TGG | + | chr5.4:10150891-10150910 | None:intergenic | 35.0% | |
| CATCAACCAAAACTATGTTC+TGG | + | chr5.4:10151400-10151419 | None:intergenic | 35.0% | |
| CCAATAACATCAACATACCT+CGG | + | chr5.4:10151006-10151025 | None:intergenic | 35.0% | |
| CGGAAGAAGCAATTTACATA+GGG | - | chr5.4:10151468-10151487 | MS.gene010323:intron | 35.0% | |
| GAAGGTAATTCTTGACTACA+AGG | - | chr5.4:10150855-10150874 | MS.gene010323:CDS | 35.0% | |
| TACTTGTTCAGGATATACCA+TGG | + | chr5.4:10150542-10150561 | None:intergenic | 35.0% | |
| TAGTCAAGAATTACCTTCTG+CGG | + | chr5.4:10150853-10150872 | None:intergenic | 35.0% | |
| TATCCATCGATACTTTGCAT+GGG | + | chr5.4:10151442-10151461 | None:intergenic | 35.0% | |
| TATGGTTGACTACAGATTTG+GGG | + | chr5.4:10151361-10151380 | None:intergenic | 35.0% | |
| TCCAATGGAACTCAATGTTA+GGG | - | chr5.4:10151565-10151584 | MS.gene010323:intron | 35.0% | |
| TCGGAAGAAGCAATTTACAT+AGG | - | chr5.4:10151467-10151486 | MS.gene010323:intron | 35.0% | |
| TGAGTTTGCAATGTTATGGA+TGG | - | chr5.4:10151056-10151075 | MS.gene010323:intron | 35.0% | |
| TGGTATATCCTGAACAAGTA+AGG | - | chr5.4:10150542-10150561 | MS.gene010323:CDS | 35.0% | |
| TTCCAATCAACGACAAATTC+AGG | + | chr5.4:10150691-10150710 | None:intergenic | 35.0% | |
| ! | AGTCAACCATATACCTTTTG+TGG | - | chr5.4:10151370-10151389 | MS.gene010323:intron | 35.0% |
| ! | TGAATTTGTCGTTGATTGGA+AGG | - | chr5.4:10150690-10150709 | MS.gene010323:CDS | 35.0% |
| !! | AGTATCGATGGATACAACAT+CGG | - | chr5.4:10151448-10151467 | MS.gene010323:intron | 35.0% |
| !!! | ATCCGGCTGGAAATTTTTTT+GGG | - | chr5.4:10150749-10150768 | MS.gene010323:CDS | 35.0% |
| ACATTGCAAACTCAAAAGGG+AGG | + | chr5.4:10151050-10151069 | None:intergenic | 40.0% | |
| ACCATGGTATCAAAAGTGGT+TGG | + | chr5.4:10150526-10150545 | None:intergenic | 40.0% | |
| ACCCTAACATTGAGTTCCAT+TGG | + | chr5.4:10151569-10151588 | None:intergenic | 40.0% | |
| AGCATCGCTGTACAAAATGT+CGG | - | chr5.4:10150715-10150734 | MS.gene010323:CDS | 40.0% | |
| CAATCAACGACAAATTCAGG+AGG | + | chr5.4:10150688-10150707 | None:intergenic | 40.0% | |
| CACAGTACCTTGCAATAATC+CGG | + | chr5.4:10150819-10150838 | None:intergenic | 40.0% | |
| CCGAGGTATGTTGATGTTAT+TGG | - | chr5.4:10151003-10151022 | MS.gene010323:intron | 40.0% | |
| CTAACATTGAGTTCCATTGG+AGG | + | chr5.4:10151566-10151585 | None:intergenic | 40.0% | |
| CTCCAATGGAACTCAATGTT+AGG | - | chr5.4:10151564-10151583 | MS.gene010323:intron | 40.0% | |
| CTCCTGAATTTGTCGTTGAT+TGG | - | chr5.4:10150686-10150705 | MS.gene010323:CDS | 40.0% | |
| GAAGCAATTTACATAGGGAG+TGG | - | chr5.4:10151473-10151492 | MS.gene010323:intron | 40.0% | |
| GTATCCATCGATACTTTGCA+TGG | + | chr5.4:10151443-10151462 | None:intergenic | 40.0% | |
| GTGTACTAACCAAGTCACTT+CGG | + | chr5.4:10151227-10151246 | None:intergenic | 40.0% | |
| TTGTCTGACATGTTCATCAG+AGG | - | chr5.4:10150790-10150809 | MS.gene010323:CDS | 40.0% | |
| ! | ACTGGTGACATGCTTTTCTT+TGG | - | chr5.4:10151530-10151549 | MS.gene010323:intron | 40.0% |
| ! | ATGCGAATTGTTGATGGAGA+AGG | - | chr5.4:10150898-10150917 | MS.gene010323:CDS | 40.0% |
| ! | TGACATGCTTTTCTTTGGAC+TGG | - | chr5.4:10151535-10151554 | MS.gene010323:intron | 40.0% |
| ! | TGCGAATTGTTGATGGAGAA+GGG | - | chr5.4:10150899-10150918 | MS.gene010323:CDS | 40.0% |
| !! | ACCAACCACTTTTGATACCA+TGG | - | chr5.4:10150522-10150541 | MS.gene010323:CDS | 40.0% |
| !! | ATTCCCATGCAAAGTATCGA+TGG | - | chr5.4:10151436-10151455 | MS.gene010323:intron | 40.0% |
| !!! | GATCCGGCTGGAAATTTTTT+TGG | - | chr5.4:10150748-10150767 | MS.gene010323:CDS | 40.0% |
| !!! | TTCCTGCTTTTGACTTTCAG+TGG | - | chr5.4:10151169-10151188 | MS.gene010323:CDS | 40.0% |
| !!! | TTTTGACTTTCAGTGGACCT+TGG | - | chr5.4:10151176-10151195 | MS.gene010323:CDS | 40.0% |
| ATTTCCAGCCGGATCTTTGA+TGG | + | chr5.4:10150743-10150762 | None:intergenic | 45.0% | |
| CAAACCTTCAAGTCAATCCG+AGG | - | chr5.4:10150986-10151005 | MS.gene010323:CDS | 45.0% | |
| CAATTTACATAGGGAGTGGC+TGG | - | chr5.4:10151477-10151496 | MS.gene010323:intron | 45.0% | |
| GTCCACTGAAAGTCAAAAGC+AGG | + | chr5.4:10151174-10151193 | None:intergenic | 45.0% | |
| TCTGACATGTTCATCAGAGG+CGG | - | chr5.4:10150793-10150812 | MS.gene010323:CDS | 45.0% | |
| TGGTTTCAATGAACCGCAGA+AGG | - | chr5.4:10150837-10150856 | MS.gene010323:CDS | 45.0% | |
| TGTCGGATCCATCAAAGATC+CGG | - | chr5.4:10150732-10150751 | MS.gene010323:CDS | 45.0% | |
| TTGACTTACCCGTTGGAAAG+TGG | + | chr5.4:10150095-10150114 | None:intergenic | 45.0% | |
| ! | GGGAACGACGTACCATATTT+TGG | - | chr5.4:10150919-10150938 | MS.gene010323:CDS | 45.0% |
| !! | CATACCTCGGATTGACTTGA+AGG | + | chr5.4:10150993-10151012 | None:intergenic | 45.0% |
| !! | CGGATTATTGCAAGGTACTG+TGG | - | chr5.4:10150817-10150836 | MS.gene010323:CDS | 45.0% |
| !! | CTCGGATTGACTTGAAGGTT+TGG | + | chr5.4:10150988-10151007 | None:intergenic | 45.0% |
| !! | TATGGTGTTGACTTACCCGT+TGG | + | chr5.4:10150102-10150121 | None:intergenic | 45.0% |
| !! | TCTTATATAAATTATAATAT+AGG | - | chr5.4:10150648-10150667 | MS.gene010323:CDS | 5.0% |
| !!! | ATATAAAAAATAGATTTTAA+TGG | + | chr5.4:10151251-10151270 | None:intergenic | 5.0% |
| ACCCGTTGGAAAGTGGAGTA+GGG | + | chr5.4:10150088-10150107 | None:intergenic | 50.0% | |
| AGTGGACCTTGGATGTAACC+AGG | - | chr5.4:10151187-10151206 | MS.gene010323:intron | 50.0% | |
| ATGTTCTGGTCGGCCACAAA+AGG | + | chr5.4:10151386-10151405 | None:intergenic | 50.0% | |
| CAATGGAGTTGACCCTTCAG+GGG | - | chr5.4:10150498-10150517 | MS.gene010323:CDS | 50.0% | |
| CCAATGGAGTTGACCCTTCA+GGG | - | chr5.4:10150497-10150516 | MS.gene010323:CDS | 50.0% | |
| GATGTTATTGGTCCCCCTGA+CGG | - | chr5.4:10151015-10151034 | MS.gene010323:intron | 50.0% | |
| GTAACCAGGCCAGTTGCTAA+GGG | - | chr5.4:10151201-10151220 | MS.gene010323:intron | 50.0% | |
| GTCCCTACTCCACTTTCCAA+CGG | - | chr5.4:10150083-10150102 | MS.gene010323:CDS | 50.0% | |
| TACCCGTTGGAAAGTGGAGT+AGG | + | chr5.4:10150089-10150108 | None:intergenic | 50.0% | |
| TCCAATGGAGTTGACCCTTC+AGG | - | chr5.4:10150496-10150515 | MS.gene010323:CDS | 50.0% | |
| TCCCTACTCCACTTTCCAAC+GGG | - | chr5.4:10150084-10150103 | MS.gene010323:CDS | 50.0% | |
| TGTAACCAGGCCAGTTGCTA+AGG | - | chr5.4:10151200-10151219 | MS.gene010323:intron | 50.0% | |
| ! | AACTGGCCTGGTTACATCCA+AGG | + | chr5.4:10151196-10151215 | None:intergenic | 50.0% |
| ! | GGCCGACCAGAACATAGTTT+TGG | - | chr5.4:10151391-10151410 | MS.gene010323:intron | 50.0% |
| ! | GGTCGGCCACAAAAGGTATA+TGG | + | chr5.4:10151379-10151398 | None:intergenic | 50.0% |
| ! | TGGACTGGACAATCCTCCAA+TGG | - | chr5.4:10151550-10151569 | MS.gene010323:intron | 50.0% |
| ACATGTTCATCAGAGGCGGC+CGG | - | chr5.4:10150797-10150816 | MS.gene010323:CDS | 55.0% | |
| AGGAAAAGACCACCGTCAGG+GGG | + | chr5.4:10151030-10151049 | None:intergenic | 55.0% | |
| CCCTGAAGGGTCAACTCCAT+TGG | + | chr5.4:10150500-10150519 | None:intergenic | 55.0% | |
| GAGGAAAAGACCACCGTCAG+GGG | + | chr5.4:10151031-10151050 | None:intergenic | 55.0% | |
| GGAGGAAAAGACCACCGTCA+GGG | + | chr5.4:10151032-10151051 | None:intergenic | 55.0% | |
| GGATCCATCAAAGATCCGGC+TGG | - | chr5.4:10150736-10150755 | MS.gene010323:CDS | 55.0% | |
| TCACTTCGGCCCTTAGCAAC+TGG | + | chr5.4:10151213-10151232 | None:intergenic | 55.0% | |
| TGCTAAGGGCCGAAGTGACT+TGG | - | chr5.4:10151215-10151234 | MS.gene010323:intron | 55.0% | |
| ! | AAAGTGGTTGGTGCCCCTGA+AGG | + | chr5.4:10150514-10150533 | None:intergenic | 55.0% |
| ! | AAGTGGTTGGTGCCCCTGAA+GGG | + | chr5.4:10150513-10150532 | None:intergenic | 55.0% |
| GAGGCGGCCGGATTATTGCA+AGG | - | chr5.4:10150809-10150828 | MS.gene010323:CDS | 60.0% | |
| GGGAGGAAAAGACCACCGTC+AGG | + | chr5.4:10151033-10151052 | None:intergenic | 60.0% | |
| GTTATTGGTCCCCCTGACGG+TGG | - | chr5.4:10151018-10151037 | MS.gene010323:intron | 60.0% | |
| TCGGCCCTTAGCAACTGGCC+TGG | + | chr5.4:10151208-10151227 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 10150080 | 10151610 | 10150080 | ID=MS.gene010323 |
| chr5.4 | mRNA | 10150080 | 10151610 | 10150080 | ID=MS.gene010323.t1;Parent=MS.gene010323 |
| chr5.4 | exon | 10151585 | 10151610 | 10151585 | ID=MS.gene010323.t1.exon1;Parent=MS.gene010323.t1 |
| chr5.4 | CDS | 10151585 | 10151610 | 10151585 | ID=cds.MS.gene010323.t1;Parent=MS.gene010323.t1 |
| chr5.4 | exon | 10151132 | 10151198 | 10151132 | ID=MS.gene010323.t1.exon2;Parent=MS.gene010323.t1 |
| chr5.4 | CDS | 10151132 | 10151198 | 10151132 | ID=cds.MS.gene010323.t1;Parent=MS.gene010323.t1 |
| chr5.4 | exon | 10150454 | 10151020 | 10150454 | ID=MS.gene010323.t1.exon3;Parent=MS.gene010323.t1 |
| chr5.4 | CDS | 10150454 | 10151020 | 10150454 | ID=cds.MS.gene010323.t1;Parent=MS.gene010323.t1 |
| chr5.4 | exon | 10150080 | 10150337 | 10150080 | ID=MS.gene010323.t1.exon4;Parent=MS.gene010323.t1 |
| chr5.4 | CDS | 10150080 | 10150337 | 10150080 | ID=cds.MS.gene010323.t1;Parent=MS.gene010323.t1 |
| Gene Sequence |
| Protein sequence |
