Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010339.t1 | XP_003611723.1 | 80.9 | 131 | 24 | 1 | 24 | 153 | 144 | 274 | 1.00E-53 | 219.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010339.t1 | O80888 | 38.9 | 131 | 71 | 3 | 26 | 149 | 142 | 270 | 7.9e-18 | 91.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010339.t1 | G7K6M4 | 80.9 | 131 | 24 | 1 | 24 | 153 | 144 | 274 | 7.5e-54 | 219.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010339.t1 | MTR_5g017140 | 80.916 | 131 | 24 | 1 | 24 | 153 | 144 | 274 | 6.02e-74 | 224 |
MS.gene010339.t1 | MTR_5g017110 | 64.662 | 133 | 44 | 1 | 24 | 153 | 145 | 277 | 2.53e-53 | 172 |
MS.gene010339.t1 | MTR_0189s0010 | 59.375 | 128 | 47 | 2 | 24 | 148 | 162 | 287 | 3.21e-48 | 159 |
MS.gene010339.t1 | MTR_0154s0020 | 57.812 | 128 | 49 | 2 | 24 | 148 | 142 | 267 | 4.20e-47 | 155 |
MS.gene010339.t1 | MTR_0154s0040 | 57.480 | 127 | 49 | 2 | 24 | 147 | 142 | 266 | 2.69e-46 | 154 |
MS.gene010339.t1 | MTR_2g023890 | 39.344 | 122 | 69 | 3 | 26 | 146 | 142 | 259 | 6.25e-23 | 92.8 |
MS.gene010339.t1 | MTR_4g049730 | 40.000 | 120 | 68 | 2 | 26 | 144 | 136 | 252 | 6.49e-23 | 93.2 |
MS.gene010339.t1 | MTR_2g088020 | 42.017 | 119 | 64 | 2 | 24 | 141 | 142 | 256 | 1.73e-22 | 92.0 |
MS.gene010339.t1 | MTR_3g096230 | 36.364 | 121 | 75 | 2 | 24 | 143 | 383 | 502 | 2.29e-21 | 89.7 |
MS.gene010339.t1 | MTR_3g096230 | 36.364 | 121 | 75 | 2 | 24 | 143 | 383 | 502 | 3.54e-21 | 89.4 |
MS.gene010339.t1 | MTR_3g073250 | 38.843 | 121 | 69 | 3 | 24 | 142 | 407 | 524 | 4.15e-20 | 85.9 |
MS.gene010339.t1 | MTR_2g005290 | 33.333 | 141 | 71 | 4 | 24 | 141 | 148 | 288 | 1.48e-19 | 84.0 |
MS.gene010339.t1 | MTR_5g059880 | 39.167 | 120 | 68 | 3 | 24 | 141 | 329 | 445 | 1.58e-19 | 84.3 |
MS.gene010339.t1 | MTR_8g098425 | 36.975 | 119 | 73 | 2 | 24 | 141 | 547 | 664 | 1.64e-19 | 84.3 |
MS.gene010339.t1 | MTR_1g100250 | 37.815 | 119 | 72 | 2 | 24 | 141 | 550 | 667 | 2.34e-19 | 84.0 |
MS.gene010339.t1 | MTR_5g071560 | 41.667 | 120 | 67 | 2 | 22 | 141 | 147 | 263 | 3.73e-19 | 82.8 |
MS.gene010339.t1 | MTR_8g093730 | 32.558 | 129 | 85 | 2 | 24 | 151 | 438 | 565 | 7.59e-19 | 82.4 |
MS.gene010339.t1 | MTR_0685s0020 | 39.496 | 119 | 67 | 3 | 24 | 140 | 128 | 243 | 3.31e-18 | 79.0 |
MS.gene010339.t1 | MTR_5g059940 | 38.017 | 121 | 70 | 3 | 24 | 142 | 262 | 379 | 3.36e-18 | 80.1 |
MS.gene010339.t1 | MTR_5g060350 | 38.333 | 120 | 69 | 3 | 24 | 141 | 458 | 574 | 4.89e-18 | 80.1 |
MS.gene010339.t1 | MTR_7g113490 | 36.364 | 99 | 61 | 1 | 46 | 142 | 234 | 332 | 6.85e-18 | 79.7 |
MS.gene010339.t1 | MTR_1g105290 | 39.394 | 99 | 58 | 1 | 46 | 142 | 221 | 319 | 1.31e-17 | 79.0 |
MS.gene010339.t1 | MTR_1g105290 | 39.394 | 99 | 58 | 1 | 46 | 142 | 221 | 319 | 1.32e-17 | 79.0 |
MS.gene010339.t1 | MTR_1g105290 | 39.394 | 99 | 58 | 1 | 46 | 142 | 221 | 319 | 2.12e-17 | 78.2 |
MS.gene010339.t1 | MTR_4g094415 | 37.500 | 120 | 70 | 3 | 24 | 141 | 301 | 417 | 2.82e-17 | 77.8 |
MS.gene010339.t1 | MTR_3g101210 | 33.577 | 137 | 81 | 4 | 21 | 150 | 444 | 577 | 5.13e-17 | 77.4 |
MS.gene010339.t1 | MTR_5g017890 | 33.083 | 133 | 79 | 3 | 21 | 146 | 509 | 638 | 5.16e-17 | 77.4 |
MS.gene010339.t1 | MTR_3g101210 | 33.577 | 137 | 81 | 4 | 21 | 150 | 444 | 577 | 6.20e-17 | 77.0 |
MS.gene010339.t1 | MTR_4g074875 | 31.818 | 132 | 89 | 1 | 16 | 147 | 150 | 280 | 3.13e-14 | 69.3 |
MS.gene010339.t1 | MTR_5g059910 | 36.364 | 121 | 72 | 3 | 24 | 142 | 268 | 385 | 3.20e-14 | 68.9 |
MS.gene010339.t1 | MTR_4g074875 | 31.818 | 132 | 89 | 1 | 16 | 147 | 150 | 280 | 3.22e-14 | 69.3 |
MS.gene010339.t1 | MTR_4g075410 | 31.250 | 128 | 87 | 1 | 16 | 143 | 150 | 276 | 1.05e-13 | 67.8 |
MS.gene010339.t1 | MTR_4g075410 | 31.250 | 128 | 87 | 1 | 16 | 143 | 150 | 276 | 1.06e-13 | 67.8 |
MS.gene010339.t1 | MTR_6g005210 | 37.383 | 107 | 60 | 3 | 47 | 149 | 245 | 348 | 2.05e-12 | 63.9 |
MS.gene010339.t1 | MTR_4g005830 | 32.168 | 143 | 82 | 5 | 9 | 141 | 202 | 339 | 3.65e-12 | 63.2 |
MS.gene010339.t1 | MTR_6g090470 | 31.818 | 132 | 79 | 2 | 24 | 146 | 205 | 334 | 4.53e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010339.t1 | AT3G50310 | 53.077 | 130 | 54 | 3 | 24 | 146 | 145 | 274 | 1.91e-39 | 136 |
MS.gene010339.t1 | AT5G67080 | 50.365 | 137 | 58 | 4 | 24 | 152 | 147 | 281 | 1.99e-39 | 136 |
MS.gene010339.t1 | AT4G36950 | 50.806 | 124 | 54 | 2 | 24 | 142 | 145 | 266 | 2.22e-36 | 128 |
MS.gene010339.t1 | AT5G55090 | 42.308 | 130 | 72 | 2 | 23 | 151 | 139 | 266 | 6.04e-27 | 104 |
MS.gene010339.t1 | AT5G55090 | 42.308 | 130 | 72 | 2 | 23 | 151 | 201 | 328 | 8.19e-27 | 105 |
MS.gene010339.t1 | AT1G07150 | 38.571 | 140 | 82 | 3 | 9 | 148 | 137 | 272 | 7.99e-26 | 102 |
MS.gene010339.t1 | AT1G07150 | 39.716 | 141 | 79 | 5 | 9 | 148 | 151 | 286 | 8.89e-26 | 102 |
MS.gene010339.t1 | AT1G05100 | 40.650 | 123 | 68 | 2 | 26 | 145 | 147 | 267 | 9.99e-24 | 94.7 |
MS.gene010339.t1 | AT2G30040 | 43.119 | 109 | 61 | 1 | 46 | 154 | 176 | 283 | 1.34e-23 | 95.9 |
MS.gene010339.t1 | AT4G26890 | 42.000 | 100 | 57 | 1 | 47 | 145 | 158 | 257 | 4.35e-23 | 94.4 |
MS.gene010339.t1 | AT3G46140 | 38.356 | 146 | 82 | 5 | 4 | 141 | 224 | 369 | 2.00e-21 | 89.0 |
MS.gene010339.t1 | AT2G32510 | 38.931 | 131 | 71 | 3 | 26 | 149 | 142 | 270 | 3.11e-21 | 88.6 |
MS.gene010339.t1 | AT1G63700 | 36.885 | 122 | 75 | 2 | 24 | 144 | 539 | 659 | 2.84e-20 | 86.7 |
MS.gene010339.t1 | AT1G63700 | 36.885 | 122 | 75 | 2 | 24 | 144 | 539 | 659 | 2.84e-20 | 86.7 |
MS.gene010339.t1 | AT3G46160 | 34.783 | 138 | 85 | 3 | 9 | 141 | 195 | 332 | 4.89e-19 | 82.8 |
MS.gene010339.t1 | AT1G54960 | 36.364 | 110 | 69 | 1 | 46 | 154 | 234 | 343 | 3.12e-18 | 80.9 |
MS.gene010339.t1 | AT1G54960 | 36.364 | 110 | 69 | 1 | 46 | 154 | 234 | 343 | 3.12e-18 | 80.9 |
MS.gene010339.t1 | AT4G08500 | 38.017 | 121 | 69 | 3 | 24 | 141 | 470 | 587 | 4.54e-18 | 80.5 |
MS.gene010339.t1 | AT3G45670 | 34.641 | 153 | 92 | 3 | 4 | 148 | 220 | 372 | 5.31e-18 | 79.7 |
MS.gene010339.t1 | AT1G09000 | 38.532 | 109 | 66 | 1 | 46 | 153 | 235 | 343 | 9.90e-18 | 79.3 |
MS.gene010339.t1 | AT1G09000 | 38.532 | 109 | 66 | 1 | 46 | 153 | 235 | 343 | 1.08e-17 | 79.3 |
MS.gene010339.t1 | AT3G06030 | 36.735 | 98 | 61 | 1 | 46 | 142 | 234 | 331 | 1.65e-17 | 78.6 |
MS.gene010339.t1 | AT1G53570 | 34.615 | 104 | 67 | 1 | 46 | 148 | 374 | 477 | 2.31e-17 | 78.2 |
MS.gene010339.t1 | AT1G53570 | 34.615 | 104 | 67 | 1 | 46 | 148 | 374 | 477 | 2.33e-17 | 78.2 |
MS.gene010339.t1 | AT1G53570 | 34.615 | 104 | 67 | 1 | 46 | 148 | 374 | 477 | 2.71e-17 | 78.2 |
MS.gene010339.t1 | AT1G53570 | 34.615 | 104 | 67 | 1 | 46 | 148 | 374 | 477 | 2.76e-17 | 78.2 |
MS.gene010339.t1 | AT1G53570 | 34.615 | 104 | 67 | 1 | 46 | 148 | 374 | 477 | 2.76e-17 | 78.2 |
MS.gene010339.t1 | AT1G53570 | 34.615 | 104 | 67 | 1 | 46 | 148 | 374 | 477 | 2.76e-17 | 78.2 |
MS.gene010339.t1 | AT1G53570 | 34.615 | 104 | 67 | 1 | 46 | 148 | 348 | 451 | 3.14e-17 | 77.8 |
MS.gene010339.t1 | AT4G12020 | 36.134 | 119 | 73 | 2 | 24 | 142 | 1688 | 1803 | 6.77e-17 | 77.0 |
MS.gene010339.t1 | AT4G12020 | 36.134 | 119 | 73 | 2 | 24 | 142 | 1763 | 1878 | 8.63e-17 | 76.6 |
MS.gene010339.t1 | AT4G12020 | 36.134 | 119 | 73 | 2 | 24 | 142 | 1755 | 1870 | 2.52e-16 | 75.5 |
MS.gene010339.t1 | AT4G04632 | 38.776 | 98 | 56 | 2 | 52 | 145 | 1 | 98 | 3.63e-16 | 70.1 |
MS.gene010339.t1 | AT2G42550 | 33.803 | 142 | 86 | 4 | 4 | 141 | 137 | 274 | 1.06e-15 | 73.2 |
MS.gene010339.t1 | AT5G66850 | 31.538 | 130 | 79 | 3 | 21 | 143 | 483 | 609 | 1.64e-15 | 73.2 |
MS.gene010339.t1 | AT4G08480 | 36.066 | 122 | 70 | 4 | 24 | 141 | 638 | 755 | 1.82e-15 | 72.8 |
MS.gene010339.t1 | AT5G66850 | 31.538 | 130 | 79 | 3 | 21 | 143 | 483 | 609 | 2.12e-15 | 72.8 |
MS.gene010339.t1 | AT3G45790 | 38.679 | 106 | 60 | 3 | 26 | 126 | 249 | 354 | 1.25e-14 | 70.1 |
MS.gene010339.t1 | AT4G08470 | 33.884 | 121 | 74 | 3 | 24 | 141 | 358 | 475 | 1.45e-14 | 70.1 |
MS.gene010339.t1 | AT4G08470 | 33.884 | 121 | 74 | 3 | 24 | 141 | 440 | 557 | 1.45e-14 | 70.1 |
MS.gene010339.t1 | AT2G41930 | 33.588 | 131 | 69 | 5 | 26 | 146 | 159 | 281 | 2.57e-14 | 69.3 |
MS.gene010339.t1 | AT4G12020 | 35.294 | 119 | 58 | 3 | 24 | 142 | 1755 | 1854 | 4.55e-14 | 68.9 |
MS.gene010339.t1 | AT4G12020 | 35.294 | 119 | 58 | 3 | 24 | 142 | 1763 | 1862 | 4.60e-14 | 68.9 |
MS.gene010339.t1 | AT3G13530 | 31.250 | 128 | 87 | 1 | 16 | 143 | 150 | 276 | 1.62e-13 | 67.4 |
MS.gene010339.t1 | AT5G40440 | 40.196 | 102 | 56 | 2 | 47 | 145 | 162 | 261 | 3.01e-13 | 66.2 |
MS.gene010339.t1 | AT3G07980 | 32.031 | 128 | 86 | 1 | 16 | 143 | 150 | 276 | 3.12e-13 | 66.6 |
MS.gene010339.t1 | AT3G07980 | 32.031 | 128 | 86 | 1 | 16 | 143 | 150 | 276 | 3.13e-13 | 66.6 |
MS.gene010339.t1 | AT5G40440 | 39.623 | 106 | 59 | 2 | 47 | 149 | 226 | 329 | 3.22e-13 | 66.2 |
MS.gene010339.t1 | AT5G40440 | 39.623 | 106 | 59 | 2 | 47 | 149 | 226 | 329 | 3.22e-13 | 66.2 |
MS.gene010339.t1 | AT5G40440 | 39.623 | 106 | 59 | 2 | 47 | 149 | 226 | 329 | 3.22e-13 | 66.2 |
MS.gene010339.t1 | AT5G40440 | 39.623 | 106 | 59 | 2 | 47 | 149 | 244 | 347 | 3.25e-13 | 66.2 |
MS.gene010339.t1 | AT5G40440 | 39.623 | 106 | 59 | 2 | 47 | 149 | 244 | 347 | 3.25e-13 | 66.2 |
MS.gene010339.t1 | AT5G12090 | 28.378 | 148 | 100 | 4 | 9 | 153 | 161 | 305 | 3.48e-13 | 66.2 |
MS.gene010339.t1 | AT2G05060 | 30.469 | 128 | 77 | 4 | 26 | 147 | 161 | 282 | 4.15e-11 | 60.1 |
MS.gene010339.t1 | AT5G27510 | 31.148 | 122 | 78 | 3 | 24 | 141 | 150 | 269 | 5.38e-11 | 59.7 |
Find 37 sgRNAs with CRISPR-Local
Find 46 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGAATCGCCGACGGATATA+TGG | 0.243489 | 5.4:-10290183 | MS.gene010339:CDS |
CCTTCTCGTAATAATTCATC+TGG | 0.379686 | 5.4:+10290049 | None:intergenic |
GCTATTGTGGAAATGGTTAC+TGG | 0.394847 | 5.4:-10290148 | MS.gene010339:CDS |
TTAAGGATCCTTTGAGAAGA+TGG | 0.405417 | 5.4:-10290000 | MS.gene010339:CDS |
ACACTATCATTCACCGCTTC+TGG | 0.411589 | 5.4:+10290208 | None:intergenic |
TGATGTTGACGATTCGAATT+GGG | 0.421148 | 5.4:-10290096 | MS.gene010339:CDS |
TCTTGAAAAGTGTTTCGTTA+AGG | 0.422240 | 5.4:-10290017 | MS.gene010339:CDS |
TTGATGTTGACGATTCGAAT+TGG | 0.426586 | 5.4:-10290097 | MS.gene010339:CDS |
TGGTTGCGCTATTGTGGAAA+TGG | 0.430722 | 5.4:-10290155 | MS.gene010339:CDS |
TGAATCGCCGACGGATATAT+GGG | 0.431895 | 5.4:-10290182 | MS.gene010339:CDS |
GCTTCTGGTGACATAATTAC+CGG | 0.459669 | 5.4:+10290223 | None:intergenic |
TTGACGATTCGAATTGGGGT+TGG | 0.467699 | 5.4:-10290091 | MS.gene010339:CDS |
GGCTCTTGGTTGCGCTATTG+TGG | 0.495111 | 5.4:-10290161 | MS.gene010339:CDS |
CCGACGGATATATGGGCTCT+TGG | 0.500419 | 5.4:-10290175 | MS.gene010339:CDS |
CAGATGAATTATTACGAGAA+GGG | 0.520167 | 5.4:-10290048 | MS.gene010339:CDS |
GAACGACAGTGGTGAGCTCT+CGG | 0.525648 | 5.4:-10290444 | MS.gene010339:CDS |
CCAGATGAATTATTACGAGA+AGG | 0.525954 | 5.4:-10290049 | MS.gene010339:CDS |
TTTCTAGAATATGTCAGTGG+TGG | 0.546933 | 5.4:-10290488 | None:intergenic |
GGTAATTATGTCACCAGAAG+CGG | 0.557800 | 5.4:-10290221 | MS.gene010339:CDS |
GGTGAAAAGTGGCGATCAAG+AGG | 0.575193 | 5.4:-10290250 | MS.gene010339:CDS |
GTTGTAACAGAGTTAAGTTG+AGG | 0.584853 | 5.4:-10289923 | None:intergenic |
GGGTTGAACAAGGTGAAAAG+TGG | 0.592877 | 5.4:-10290261 | MS.gene010339:CDS |
TCAGTCTTGCGAAAGAGACA+AGG | 0.595495 | 5.4:-10290282 | MS.gene010339:CDS |
GATGTTGACGATTCGAATTG+GGG | 0.607028 | 5.4:-10290095 | MS.gene010339:CDS |
GTGGCGATCAAGAGGAACTC+CGG | 0.608502 | 5.4:-10290242 | MS.gene010339:CDS |
TCTATCGTCCATCTTCTCAA+AGG | 0.609523 | 5.4:+10289992 | None:intergenic |
CAGTCTTGCGAAAGAGACAA+GGG | 0.612424 | 5.4:-10290281 | MS.gene010339:CDS |
ACTGTCGTTCTCGAGTTGAT+CGG | 0.619509 | 5.4:+10290457 | None:intergenic |
ACCTCGTATAACGACTAATG+AGG | 0.627651 | 5.4:+10290417 | None:intergenic |
AGAATCCGCATGGAATGTGT+CGG | 0.631308 | 5.4:-10290125 | MS.gene010339:CDS |
TGGTTACTGGAGAATCCGCA+TGG | 0.636768 | 5.4:-10290135 | MS.gene010339:CDS |
CCAAGAGCCCATATATCCGT+CGG | 0.644209 | 5.4:+10290175 | None:intergenic |
GATCAACTCGAGAACGACAG+TGG | 0.656688 | 5.4:-10290455 | MS.gene010339:CDS |
AAAGAGACAAGGGTTGAACA+AGG | 0.656891 | 5.4:-10290271 | MS.gene010339:CDS |
ACCTCATTAGTCGTTATACG+AGG | 0.719200 | 5.4:-10290418 | MS.gene010339:intron |
TAGTGTGTATGAATCGCCGA+CGG | 0.726925 | 5.4:-10290191 | MS.gene010339:CDS |
CATATCCGACACATTCCATG+CGG | 0.747815 | 5.4:+10290120 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TCAAGTATATTCACAAAAAA+GGG | - | chr5.4:10290024-10290043 | MS.gene010339:CDS | 20.0% |
!!! | AATAATTCATCTGGAATTTT+TGG | + | chr5.4:10290348-10290367 | None:intergenic | 20.0% |
! | CTCAAGTATATTCACAAAAA+AGG | - | chr5.4:10290023-10290042 | MS.gene010339:CDS | 25.0% |
!! | AACTGAAACATTTTCAACAT+CGG | + | chr5.4:10290463-10290482 | None:intergenic | 25.0% |
CAGATGAATTATTACGAGAA+GGG | - | chr5.4:10290355-10290374 | MS.gene010339:intron | 30.0% | |
! | TTTTCAACATCGGAGATAAA+CGG | + | chr5.4:10290453-10290472 | None:intergenic | 30.0% |
!! | TCTTGAAAAGTGTTTCGTTA+AGG | - | chr5.4:10290386-10290405 | MS.gene010339:intron | 30.0% |
AACATTCTCGTATTCGAGAA+TGG | - | chr5.4:10290078-10290097 | MS.gene010339:CDS | 35.0% | |
ATTCTCGAATACGAGAATGT+TGG | + | chr5.4:10290079-10290098 | None:intergenic | 35.0% | |
CCAGATGAATTATTACGAGA+AGG | - | chr5.4:10290354-10290373 | MS.gene010339:intron | 35.0% | |
CCTTCTCGTAATAATTCATC+TGG | + | chr5.4:10290357-10290376 | None:intergenic | 35.0% | |
TGATGTTGACGATTCGAATT+GGG | - | chr5.4:10290307-10290326 | MS.gene010339:intron | 35.0% | |
TTCTCGAATACGAGAATGTT+GGG | + | chr5.4:10290078-10290097 | None:intergenic | 35.0% | |
TTGATGTTGACGATTCGAAT+TGG | - | chr5.4:10290306-10290325 | MS.gene010339:intron | 35.0% | |
! | TGTTCATTGCGATTTGAAGT+TGG | - | chr5.4:10290049-10290068 | MS.gene010339:CDS | 35.0% |
! | TTAAGGATCCTTTGAGAAGA+TGG | - | chr5.4:10290403-10290422 | MS.gene010339:intron | 35.0% |
AAAGAGACAAGGGTTGAACA+AGG | - | chr5.4:10290132-10290151 | MS.gene010339:CDS | 40.0% | |
ACCTCATTAGTCGTTATACG+AGG | - | chr5.4:10289985-10290004 | MS.gene010339:CDS | 40.0% | |
ACCTCGTATAACGACTAATG+AGG | + | chr5.4:10289989-10290008 | None:intergenic | 40.0% | |
CATTAGTCGTTATACGAGGT+CGG | - | chr5.4:10289989-10290008 | MS.gene010339:CDS | 40.0% | |
GATGTTGACGATTCGAATTG+GGG | - | chr5.4:10290308-10290327 | MS.gene010339:intron | 40.0% | |
GCTATTGTGGAAATGGTTAC+TGG | - | chr5.4:10290255-10290274 | MS.gene010339:CDS | 40.0% | |
GCTTCTGGTGACATAATTAC+CGG | + | chr5.4:10290183-10290202 | None:intergenic | 40.0% | |
GGTAATTATGTCACCAGAAG+CGG | - | chr5.4:10290182-10290201 | MS.gene010339:CDS | 40.0% | |
TCTATCGTCCATCTTCTCAA+AGG | + | chr5.4:10290414-10290433 | None:intergenic | 40.0% | |
ACACTATCATTCACCGCTTC+TGG | + | chr5.4:10290198-10290217 | None:intergenic | 45.0% | |
AGAATCCGCATGGAATGTGT+CGG | - | chr5.4:10290278-10290297 | MS.gene010339:CDS | 45.0% | |
ATGAATCGCCGACGGATATA+TGG | - | chr5.4:10290220-10290239 | MS.gene010339:CDS | 45.0% | |
CAGTCTTGCGAAAGAGACAA+GGG | - | chr5.4:10290122-10290141 | MS.gene010339:CDS | 45.0% | |
CATATCCGACACATTCCATG+CGG | + | chr5.4:10290286-10290305 | None:intergenic | 45.0% | |
GGGTTGAACAAGGTGAAAAG+TGG | - | chr5.4:10290142-10290161 | MS.gene010339:CDS | 45.0% | |
TAGTGTGTATGAATCGCCGA+CGG | - | chr5.4:10290212-10290231 | MS.gene010339:CDS | 45.0% | |
TATACGAGGTCGGTTGTTGA+AGG | - | chr5.4:10289999-10290018 | MS.gene010339:CDS | 45.0% | |
TCAGTCTTGCGAAAGAGACA+AGG | - | chr5.4:10290121-10290140 | MS.gene010339:CDS | 45.0% | |
TGAATCGCCGACGGATATAT+GGG | - | chr5.4:10290221-10290240 | MS.gene010339:CDS | 45.0% | |
TGGTTGCGCTATTGTGGAAA+TGG | - | chr5.4:10290248-10290267 | MS.gene010339:CDS | 45.0% | |
TTGACGATTCGAATTGGGGT+TGG | - | chr5.4:10290312-10290331 | MS.gene010339:intron | 45.0% | |
!! | ACTGTCGTTCTCGAGTTGAT+CGG | + | chr5.4:10289949-10289968 | None:intergenic | 45.0% |
CCAAGAGCCCATATATCCGT+CGG | + | chr5.4:10290231-10290250 | None:intergenic | 50.0% | |
GATCAACTCGAGAACGACAG+TGG | - | chr5.4:10289948-10289967 | MS.gene010339:CDS | 50.0% | |
GGTGAAAAGTGGCGATCAAG+AGG | - | chr5.4:10290153-10290172 | MS.gene010339:CDS | 50.0% | |
TGGTTACTGGAGAATCCGCA+TGG | - | chr5.4:10290268-10290287 | MS.gene010339:CDS | 50.0% | |
CCGACGGATATATGGGCTCT+TGG | - | chr5.4:10290228-10290247 | MS.gene010339:CDS | 55.0% | |
GAACGACAGTGGTGAGCTCT+CGG | - | chr5.4:10289959-10289978 | MS.gene010339:CDS | 55.0% | |
GGCTCTTGGTTGCGCTATTG+TGG | - | chr5.4:10290242-10290261 | MS.gene010339:CDS | 55.0% | |
GTGGCGATCAAGAGGAACTC+CGG | - | chr5.4:10290161-10290180 | MS.gene010339:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 10289925 | 10290500 | 10289925 | ID=MS.gene010339 |
chr5.4 | mRNA | 10289925 | 10290500 | 10289925 | ID=MS.gene010339.t1;Parent=MS.gene010339 |
chr5.4 | exon | 10290419 | 10290500 | 10290419 | ID=MS.gene010339.t1.exon1;Parent=MS.gene010339.t1 |
chr5.4 | CDS | 10290419 | 10290500 | 10290419 | ID=cds.MS.gene010339.t1;Parent=MS.gene010339.t1 |
chr5.4 | exon | 10289925 | 10290307 | 10289925 | ID=MS.gene010339.t1.exon2;Parent=MS.gene010339.t1 |
chr5.4 | CDS | 10289925 | 10290307 | 10289925 | ID=cds.MS.gene010339.t1;Parent=MS.gene010339.t1 |
Gene Sequence |
Protein sequence |