AlfalfaGEDB | MS.gene010347

M. sativa cultivar XinJiangDaYe / MS.gene010347

KEGG: -
GO: GO:0003674 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene010347.t1	GAU22574.1	49.1	232	117	1	226	457	539	769	1.20E-55	227.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene010347.t1	Q9SZL8	39.1	92	53	2	153	241	77	168	2.0e-08	62.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene010347.t1	A0A2Z6LT40	49.1	232	117	1	226	457	539	769	8.4e-56	227.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene010347.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene010347.t1	MTR_1g070355	40.881	159	84	3	78	235	12	161	8.98e-28	116
MS.gene010347.t1	MTR_3g448650	32.593	135	83	3	90	223	30	157	2.48e-19	85.9
MS.gene010347.t1	MTR_0060s0090	40.000	100	56	2	152	250	59	155	3.44e-18	82.0
MS.gene010347.t1	MTR_2g101460	31.875	160	92	5	90	248	3	146	2.17e-16	78.2
MS.gene010347.t1	MTR_2g101460	35.000	140	79	4	110	248	8	136	1.26e-15	75.9
MS.gene010347.t1	MTR_5g076070	29.353	201	115	6	102	296	18	197	9.57e-14	72.0
MS.gene010347.t1	MTR_1g052260	36.735	98	61	1	129	225	56	153	2.15e-13	68.2
MS.gene010347.t1	MTR_6g463250	32.787	122	65	2	129	250	68	172	7.84e-13	67.0
MS.gene010347.t1	MTR_4g035820	38.144	97	58	2	149	245	76	170	3.96e-12	68.9
MS.gene010347.t1	MTR_6g053140	32.381	105	65	2	131	235	85	183	3.72e-11	63.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Find 130 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATGTTTGCGAAGAAC+GGG	0.439020	5.4:+10359702	MS.gene010347:CDS
AAACCTTGAAGAGGACGTGG+TGG	0.680606	5.4:+10359551	MS.gene010347:CDS
AAAGGTAGAGGTGGTGGTGT+TGG	0.526034	5.4:+10359609	MS.gene010347:CDS
AAATCCTATGGAAGAGCGAA+TGG	0.535778	5.4:+10357731	MS.gene010347:CDS
AAATGGTCGTCCGACATATT+GGG	0.404889	5.4:+10359365	MS.gene010347:CDS
AACACCACCACCTCTACCTT+TGG	0.419400	5.4:-10359607	None:intergenic
AACATGGAAAATGATGGAAG+TGG	0.670459	5.4:+10357341	MS.gene010347:CDS
AAGAATGCTAAGGATGTATT+AGG	0.335664	5.4:+10359333	MS.gene010347:CDS
AAGATGGAAGTGAGGCAGAA+GGG	0.440842	5.4:+10357546	MS.gene010347:CDS
AAGATGTTAGGCTTGAAGAG+GGG	0.541806	5.4:+10357306	MS.gene010347:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAATGCTAAGGATGTATT+AGG	+	chr5.4:10359333-10359352	MS.gene010347:CDS	30.0%
AAGTTGCTATATTGCAAATC+AGG	+	chr5.4:10357773-10357792	MS.gene010347:CDS	30.0%
AATGAAGCATATATGCGATT+AGG	-	chr5.4:10358088-10358107	None:intergenic	30.0%
AATGGTAACATGGAAAATGA+TGG	+	chr5.4:10357335-10357354	MS.gene010347:CDS	30.0%
ACCTGAAAATTTCTTCTGAA+GGG	-	chr5.4:10359200-10359219	None:intergenic	30.0%
ATAATCAATTAGCGAGACAA+CGG	+	chr5.4:10358161-10358180	MS.gene010347:intron	30.0%
CGTCTTGATTACCAAATTTA+TGG	+	chr5.4:10358322-10358341	MS.gene010347:intron	30.0%
CTAAATTCATTCACAAATGC+AGG	-	chr5.4:10358658-10358677	None:intergenic	30.0%
GATGAAGAAGTAGTAAACTA+TGG	+	chr5.4:10357467-10357486	MS.gene010347:CDS	30.0%
TCTAAATTAGTCGTTGACAA+CGG	+	chr5.4:10359441-10359460	MS.gene010347:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	10357236	10359883	10357236	ID=MS.gene010347
chr5.4	mRNA	10357236	10359883	10357236	ID=MS.gene010347.t1;Parent=MS.gene010347
chr5.4	exon	10357236	10357919	10357236	ID=MS.gene010347.t1.exon1;Parent=MS.gene010347.t1
chr5.4	CDS	10357236	10357919	10357236	ID=cds.MS.gene010347.t1;Parent=MS.gene010347.t1
chr5.4	exon	10359078	10359758	10359078	ID=MS.gene010347.t1.exon2;Parent=MS.gene010347.t1
chr5.4	CDS	10359078	10359758	10359078	ID=cds.MS.gene010347.t1;Parent=MS.gene010347.t1
chr5.4	exon	10359848	10359883	10359848	ID=MS.gene010347.t1.exon3;Parent=MS.gene010347.t1
chr5.4	CDS	10359848	10359883	10359848	ID=cds.MS.gene010347.t1;Parent=MS.gene010347.t1

Gene Sequence

>MS.gene010347

ATGGAATACAGAGCTTTTGATTGTAGTCAATTTATTGATGGAAGTCATGAAGAAGGGGCAGACATTGGAGAAGATGTTAGGCTTGAAGAGGGGGAATACAATGGTAACATGGAAAATGATGGAAGTGGTTACGAAAGCGGAGACAATGGTGAGTTTGAAGAAGATGGAGGTAGTGGTCAACCCGGAGATGATGAAGGGGTGAACTATGGTGACATGGAAGAAGATGGAAGCGATGAAGAAGTAGTAAACTATGGTGACATGGAAGAAGATGGAAGTGATGAAGAAGTGGTAGACTCTGGTGACTTGGAAGAAGATGGAAGTGAGGCAGAAGGGGTAGACTATGGTGACATGGAAGAAGATGGAAGTGACGATGAAAACCAACATATCCAAGTTGATAGTGCTGATGACATTGCGGCATTGGACCTGACTGGTTTAGGGGCTCTATTTGTAAGGAGAATTGAGTTTGGAAGCCTAGAGATTGCATATGAGTTCTATAAATCCTATGGAAGAGCGAATGGATTCACAGTTCGCAAAGGCAAGTTGCTATATTGCAAATCAGGAGAAGTAGTGCAACGCACATTTGTTTGCCATAGAGAAGGATATAGGAAAATGAAAATAACTGAGGCGAATAGAAAGCGTCGGCCAAGACCTTATACTCGATGTGGATGTCAAGCTATGTTTCGGGTACACATAAACAGTTTCACAAATCGCTGGTCTGCTACAGTTTTTAATAACCAGCACAACCATGAGCTAGTATCGCAGGAACATTGTGGACTGCTATCTTCACACTGCGTAATGACAGATTCAGACATAATGCAAATGAACAATATGTTAAAAAGTGGTATTTTACCTAATCGCATATATGCTTCATTTGCAAATCAAGCAGGAGGATATGATAAAATTGGTTTCCGGAGGAAAGATCTGTATAATCAATTAGCGAGACAACGGCGTTTGCGAAAGTCAGATGCAATTTCTGCATTAAATTATCTTCGTGGATTGGGTTCAAATGATCCCATGATGTTTTTCAAGCACACTACTGATTCTACAGGTAGACTACAACACCTGTTTTGGTGTGACGGAAAAAGTCGTCTTGATTACCAAATTTATGGCGACGTAGTCGCATTTGATGCAACATATGGTAAGAACAAATACCATTGCCCTTTAGTTGTGTTTGCTGGTGTGAATAATCATAACTCTACTATTGTTTTTGGTGGAGCTATTGTTGCTGATGAGAAGGAAGAAACTTATGTCTGGGTGCTTTCACGGTTCTTGGAAGCAATGTCTGGAAAGTCGCCAACTGCTGTAATCACTGATGGTGATTTATCAATGAAGAATGCCATAAAACAAGTGTTTCCAAATGCTTATCATAGACTGTGTGCGTGGCACTTGATTCGCAATGCATCGTCCAACATAGGCGATCCTGCATTTGTGAATGAATTTAGAAAGTGTATGTTGGGTGACTATGAGATTGGAGAATTTTCCAGGAAGTGGGCTGAAAATGTTGATTCATTTGGATTGCATGACAACAATTGGATCAAAGAAACATATATGAAGAGAAAGGCATGGGCAACAGCACATATACGTGGCCACTTTTTTGCAGGCTTCAGAACTACATCTCGATGCGAGGGGTTGCATTCAGAGATGGGGAAGTTTGTTCATTCTCGTTACAACTTGGCAGATTTTTTACTACACTATCACCGTTGTCTCAACTTCATGCGGTATAGAGAGGTCCAAGCAGACTTTGAAAGTGATTATGGTGATCCTGCTCTCATTACAAGATTCCCTAAACTTGAGGCCTCTGGTGCGAAGGTATTTACGAAAGAGATATTTTGTAAATATCAGATGTTAATCAACCGATCTTCTGCCATGGTCGTAACTGGATCGAAAGAAACATGTGGGTACCACATTTATACTGTTAGTAAGTACAGGAGACCGGACCGGGAGTGGCGTGTATCATTTAACCCTTCAGAAGAAATTTTCAGGTGTGCTTGTCGGAGGATGGAGTCATTTGGAATTCCATGTGAGCATATCATTGCAGTTTTGGTTTTTACTGATTTTGCTGAGTTGCCTGAATCCCTTGTATTGAGTAGATGGACAAAGAATGCTAAGGATGTATTAGGTAGCATCTCAAATGGTCGTCCGACATATTGGGACTCGCACCATGCAACAAGATACGGAGCATTGATGTTTAGATGGGGGAGATTGTCTAAATTAGTCGTTGACAACGGTAATGACTACAAAGAGCACATGGACATTGCGGCTGCAGCTATTTTGAAAGCCGAACAAAAGAGAGGCATAATAAGTGATAACACGACAAACCTTGAAGAGGACGTGGTGGAAGAAAATTTGCAAAATCCTGTTTCTGTCAGAACCAAAGGTAGAGGTGGTGGTGTTGGCTCCACTAGTGGAACAAACAATAGGCGTGTCGCCCATTGTTCTGCATGTGGTGATCCTGGTCATAATAAGAAAACATGTTTGCGAAGAACGGGTGGCACTCAAAATGTGAACAATGTTGATGAACATGTAAGTATATTTTAAGCGGATTTTTTTTTTTTTTTATAATATTATGAGTGATGATTCTGAATTTATGTTGTTAAAATGTTGTATTTCAGGAACATGCGCCGGCGGAGTTTATGCAGTTTATGTAG

Protein sequence

>MS.gene010347.t1

MEYRAFDCSQFIDGSHEEGADIGEDVRLEEGEYNGNMENDGSGYESGDNGEFEEDGGSGQPGDDEGVNYGDMEEDGSDEEVVNYGDMEEDGSDEEVVDSGDLEEDGSEAEGVDYGDMEEDGSDDENQHIQVDSADDIAALDLTGLGALFVRRIEFGSLEIAYEFYKSYGRANGFTVRKGKLLYCKSGEVVQRTFVCHREGYRKMKITEANRKRRPRPYTRCGCQAMFRMLINRSSAMVVTGSKETCGYHIYTVSKYRRPDREWRVSFNPSEEIFRCACRRMESFGIPCEHIIAVLVFTDFAELPESLVLSRWTKNAKDVLGSISNGRPTYWDSHHATRYGALMFRWGRLSKLVVDNGNDYKEHMDIAAAAILKAEQKRGIISDNTTNLEEDVVEENLQNPVSVRTKGRGGGVGSTSGTNNRRVAHCSACGDPGHNKKTCLRRTGGTQNVNNVDEHEHAPAEFMQFM