Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010353.t1 | PNX80761.1 | 72.8 | 268 | 66 | 1 | 86 | 353 | 34 | 294 | 2.50E-110 | 409.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010353.t1 | Q9SZL8 | 34.6 | 254 | 155 | 6 | 105 | 351 | 77 | 326 | 4.4e-31 | 137.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010353.t1 | A0A2K3LQE0 | 72.8 | 268 | 66 | 1 | 86 | 353 | 34 | 294 | 1.8e-110 | 409.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene010353.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010353.t1 | MTR_3g080590 | 84.516 | 155 | 20 | 1 | 1 | 151 | 1 | 155 | 3.39e-79 | 241 |
| MS.gene010353.t1 | MTR_7g446520 | 47.521 | 242 | 112 | 2 | 94 | 335 | 81 | 307 | 2.74e-67 | 217 |
| MS.gene010353.t1 | MTR_7g446480 | 55.429 | 175 | 78 | 0 | 175 | 349 | 140 | 314 | 1.78e-60 | 199 |
| MS.gene010353.t1 | MTR_7g446510 | 54.190 | 179 | 82 | 0 | 175 | 353 | 155 | 333 | 8.51e-58 | 192 |
| MS.gene010353.t1 | MTR_1g070355 | 34.454 | 238 | 151 | 3 | 101 | 335 | 74 | 309 | 1.73e-37 | 143 |
| MS.gene010353.t1 | MTR_6g051425 | 32.000 | 250 | 159 | 5 | 108 | 349 | 24 | 270 | 6.80e-33 | 127 |
| MS.gene010353.t1 | MTR_5g076070 | 27.778 | 252 | 165 | 4 | 81 | 329 | 45 | 282 | 1.43e-30 | 119 |
| MS.gene010353.t1 | MTR_7g028855 | 42.384 | 151 | 84 | 1 | 94 | 241 | 113 | 263 | 4.06e-30 | 121 |
| MS.gene010353.t1 | MTR_4g035820 | 33.603 | 247 | 153 | 6 | 107 | 345 | 81 | 324 | 2.09e-29 | 120 |
| MS.gene010353.t1 | MTR_3g450850 | 30.769 | 247 | 158 | 5 | 107 | 341 | 53 | 298 | 4.68e-24 | 102 |
| MS.gene010353.t1 | MTR_0558s0020 | 26.007 | 273 | 180 | 5 | 89 | 340 | 24 | 295 | 9.66e-21 | 92.0 |
| MS.gene010353.t1 | MTR_6g022080 | 27.439 | 164 | 116 | 1 | 100 | 260 | 84 | 247 | 4.03e-18 | 84.0 |
| MS.gene010353.t1 | MTR_8g446020 | 28.488 | 172 | 121 | 2 | 170 | 340 | 85 | 255 | 5.44e-16 | 77.8 |
| MS.gene010353.t1 | MTR_8g035530 | 44.156 | 77 | 41 | 1 | 88 | 164 | 1 | 75 | 1.24e-14 | 68.9 |
| MS.gene010353.t1 | MTR_6g090505 | 27.358 | 212 | 133 | 5 | 147 | 340 | 22 | 230 | 1.25e-14 | 75.1 |
| MS.gene010353.t1 | MTR_1g008290 | 31.200 | 125 | 81 | 2 | 169 | 293 | 21 | 140 | 1.74e-13 | 68.2 |
| MS.gene010353.t1 | MTR_0402s0040 | 29.310 | 174 | 118 | 5 | 104 | 274 | 29 | 200 | 4.82e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010353.t1 | AT4G38180 | 32.588 | 313 | 198 | 7 | 46 | 351 | 20 | 326 | 1.15e-34 | 136 |
| MS.gene010353.t1 | AT5G28530 | 33.333 | 261 | 158 | 5 | 107 | 352 | 61 | 320 | 5.29e-32 | 128 |
| MS.gene010353.t1 | AT5G28530 | 33.333 | 261 | 158 | 5 | 107 | 352 | 61 | 320 | 6.31e-32 | 128 |
| MS.gene010353.t1 | AT5G28530 | 33.333 | 261 | 158 | 5 | 107 | 352 | 61 | 320 | 6.31e-32 | 128 |
| MS.gene010353.t1 | AT1G10240 | 32.308 | 260 | 158 | 8 | 107 | 355 | 54 | 306 | 1.87e-27 | 115 |
| MS.gene010353.t1 | AT1G10240 | 32.308 | 260 | 158 | 8 | 107 | 355 | 54 | 306 | 1.87e-27 | 115 |
| MS.gene010353.t1 | AT4G15090 | 28.896 | 308 | 203 | 8 | 53 | 351 | 2 | 302 | 2.81e-25 | 108 |
| MS.gene010353.t1 | AT4G15090 | 28.896 | 308 | 203 | 8 | 53 | 351 | 2 | 302 | 2.81e-25 | 108 |
| MS.gene010353.t1 | AT4G15090 | 28.896 | 308 | 203 | 8 | 53 | 351 | 2 | 302 | 2.81e-25 | 108 |
| MS.gene010353.t1 | AT4G15090 | 28.896 | 308 | 203 | 8 | 53 | 351 | 2 | 302 | 2.81e-25 | 108 |
| MS.gene010353.t1 | AT4G15090 | 28.896 | 308 | 203 | 8 | 53 | 351 | 2 | 302 | 2.81e-25 | 108 |
| MS.gene010353.t1 | AT3G06250 | 29.675 | 246 | 133 | 5 | 105 | 349 | 194 | 400 | 2.20e-20 | 94.0 |
| MS.gene010353.t1 | AT3G06250 | 29.675 | 246 | 133 | 5 | 105 | 349 | 194 | 400 | 2.20e-20 | 94.0 |
| MS.gene010353.t1 | AT3G06250 | 29.675 | 246 | 133 | 5 | 105 | 349 | 194 | 400 | 2.20e-20 | 94.0 |
| MS.gene010353.t1 | AT4G19990 | 29.054 | 296 | 149 | 10 | 79 | 351 | 6 | 263 | 2.22e-20 | 94.0 |
| MS.gene010353.t1 | AT4G19990 | 29.502 | 261 | 132 | 8 | 106 | 351 | 26 | 249 | 4.63e-20 | 93.2 |
| MS.gene010353.t1 | AT4G19990 | 29.502 | 261 | 132 | 8 | 106 | 351 | 26 | 249 | 4.63e-20 | 93.2 |
| MS.gene010353.t1 | AT4G19990 | 29.502 | 261 | 132 | 8 | 106 | 351 | 26 | 249 | 5.55e-20 | 92.8 |
| MS.gene010353.t1 | AT4G19990 | 29.502 | 261 | 132 | 8 | 106 | 351 | 26 | 249 | 5.70e-20 | 92.8 |
| MS.gene010353.t1 | AT4G19990 | 29.502 | 261 | 132 | 8 | 106 | 351 | 26 | 249 | 5.70e-20 | 92.8 |
| MS.gene010353.t1 | AT1G52520 | 29.457 | 258 | 153 | 8 | 105 | 353 | 89 | 326 | 1.59e-18 | 88.2 |
| MS.gene010353.t1 | AT1G76320 | 28.405 | 257 | 152 | 7 | 105 | 349 | 1 | 237 | 1.86e-18 | 88.2 |
| MS.gene010353.t1 | AT1G76320 | 28.405 | 257 | 152 | 7 | 105 | 349 | 1 | 237 | 1.86e-18 | 88.2 |
| MS.gene010353.t1 | AT1G76320 | 28.405 | 257 | 152 | 7 | 105 | 349 | 1 | 237 | 1.90e-18 | 88.2 |
| MS.gene010353.t1 | AT1G76320 | 28.405 | 257 | 152 | 7 | 105 | 349 | 1 | 237 | 2.15e-18 | 87.8 |
| MS.gene010353.t1 | AT5G28530 | 32.768 | 177 | 113 | 4 | 107 | 278 | 61 | 236 | 2.90e-18 | 87.4 |
| MS.gene010353.t1 | AT5G28530 | 32.768 | 177 | 113 | 4 | 107 | 278 | 61 | 236 | 3.02e-18 | 87.4 |
| MS.gene010353.t1 | AT4G19990 | 45.783 | 83 | 45 | 0 | 269 | 351 | 110 | 192 | 8.96e-18 | 85.9 |
| MS.gene010353.t1 | AT3G22170 | 24.151 | 265 | 162 | 5 | 100 | 349 | 69 | 309 | 1.67e-17 | 85.5 |
| MS.gene010353.t1 | AT3G22170 | 24.151 | 265 | 162 | 5 | 100 | 349 | 69 | 309 | 1.67e-17 | 85.5 |
| MS.gene010353.t1 | AT2G27110 | 24.901 | 253 | 154 | 5 | 105 | 352 | 53 | 274 | 2.69e-17 | 84.7 |
| MS.gene010353.t1 | AT2G27110 | 24.901 | 253 | 154 | 5 | 105 | 352 | 53 | 274 | 2.69e-17 | 84.7 |
| MS.gene010353.t1 | AT1G80010 | 28.669 | 293 | 167 | 13 | 80 | 352 | 79 | 349 | 4.58e-17 | 84.0 |
| MS.gene010353.t1 | AT5G18960 | 27.935 | 247 | 139 | 7 | 105 | 349 | 215 | 424 | 1.07e-16 | 82.8 |
| MS.gene010353.t1 | AT5G18960 | 27.935 | 247 | 139 | 7 | 105 | 349 | 215 | 424 | 1.07e-16 | 82.8 |
| MS.gene010353.t1 | AT2G27110 | 40.506 | 79 | 47 | 0 | 274 | 352 | 51 | 129 | 4.59e-13 | 71.6 |
| MS.gene010353.t1 | AT2G32250 | 26.136 | 264 | 132 | 8 | 97 | 349 | 33 | 244 | 2.41e-11 | 66.2 |
| MS.gene010353.t1 | AT2G32250 | 26.136 | 264 | 132 | 8 | 97 | 349 | 33 | 244 | 2.47e-11 | 66.2 |
| MS.gene010353.t1 | AT2G32250 | 26.136 | 264 | 132 | 8 | 97 | 349 | 33 | 244 | 2.47e-11 | 66.2 |
| MS.gene010353.t1 | AT2G32250 | 26.136 | 264 | 132 | 8 | 97 | 349 | 33 | 244 | 2.72e-11 | 65.9 |
| MS.gene010353.t1 | AT2G32250 | 26.136 | 264 | 132 | 8 | 97 | 349 | 33 | 244 | 2.72e-11 | 65.9 |
| MS.gene010353.t1 | AT2G32250 | 26.136 | 264 | 132 | 8 | 97 | 349 | 33 | 244 | 2.72e-11 | 65.9 |
| MS.gene010353.t1 | AT2G32250 | 25.882 | 255 | 127 | 7 | 105 | 349 | 1 | 203 | 3.50e-11 | 65.5 |
| MS.gene010353.t1 | AT2G32250 | 26.275 | 255 | 126 | 7 | 105 | 349 | 1 | 203 | 3.53e-11 | 65.5 |
| MS.gene010353.t1 | AT4G38170 | 55.319 | 47 | 20 | 1 | 306 | 351 | 45 | 91 | 5.40e-11 | 64.7 |
Find 89 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTACTTTGAGTTACTTCC+AGG | 0.237219 | 5.4:+10438159 | MS.gene010353:CDS |
| TCACTCAATTTGCGGTAATT+AGG | 0.258248 | 5.4:-10437962 | None:intergenic |
| ATCATCAGCAATAGGGCTTT+TGG | 0.276381 | 5.4:-10439274 | None:intergenic |
| TCCATACTTGTTCTTTCTAT+AGG | 0.305560 | 5.4:-10438320 | None:intergenic |
| AGGACTTGGGTTTATCAAAA+AGG | 0.326599 | 5.4:+10438078 | MS.gene010353:CDS |
| TGATAAACCCAAGTCCTTCA+TGG | 0.346028 | 5.4:-10438072 | None:intergenic |
| AGATGATGATATAAGGGATA+TGG | 0.347376 | 5.4:+10437625 | MS.gene010353:CDS |
| ACCTATAGAAAGAACAAGTA+TGG | 0.349144 | 5.4:+10438319 | MS.gene010353:CDS |
| GAAGATTCATCATCAGCAAT+AGG | 0.352394 | 5.4:-10439282 | None:intergenic |
| ACGACTTTGTTCGTACGATT+TGG | 0.356788 | 5.4:+10437873 | MS.gene010353:CDS |
| TATTGCTGATGGCGGCTCGC+TGG | 0.361638 | 5.4:+10439325 | MS.gene010353:CDS |
| ATGTGACAGATGATGATATA+AGG | 0.367162 | 5.4:+10437618 | MS.gene010353:CDS |
| GAGTTTACATTTACAGATGA+TGG | 0.367609 | 5.4:+10438214 | MS.gene010353:CDS |
| AGGTTTGACTATGAGTGTTT+TGG | 0.377109 | 5.4:+10438274 | MS.gene010353:CDS |
| TGTAAGAACATGTCATATCT+TGG | 0.384991 | 5.4:+10438024 | MS.gene010353:CDS |
| TGGGTATAACACGACACTTT+TGG | 0.385145 | 5.4:-10439348 | None:intergenic |
| ATATAATTTCACGGATCATC+AGG | 0.409639 | 5.4:+10438105 | MS.gene010353:CDS |
| TTTGGGCAGATTCTACTAGT+AGG | 0.409763 | 5.4:+10438254 | MS.gene010353:CDS |
| TGCGGTAATTAGGCATCAAA+TGG | 0.435720 | 5.4:-10437952 | None:intergenic |
| AATAGCGTGCTATAGGAGTA+TGG | 0.437326 | 5.4:-10439388 | None:intergenic |
| CGCAGAACAATTAGTTCGAA+TGG | 0.445789 | 5.4:-10437834 | None:intergenic |
| TATCAACTTCACTCAATTTG+CGG | 0.446828 | 5.4:-10437970 | None:intergenic |
| AAGGGTGGCCATGAAGGACT+TGG | 0.449428 | 5.4:+10438064 | MS.gene010353:CDS |
| GCAAGGGTTAAAATAAAAGA+TGG | 0.464290 | 5.4:+10438127 | MS.gene010353:CDS |
| AAGATTCATCATCAGCAATA+GGG | 0.464525 | 5.4:-10439281 | None:intergenic |
| ATACTTGTTCTTTCTATAGG+TGG | 0.464692 | 5.4:-10438317 | None:intergenic |
| GTAAGAACATGTCATATCTT+GGG | 0.467321 | 5.4:+10438025 | MS.gene010353:CDS |
| GCGTCAATTAGTATGCAATA+AGG | 0.467578 | 5.4:+10437760 | MS.gene010353:CDS |
| AACGCAAAGGAGCTAATTCA+TGG | 0.469712 | 5.4:-10437925 | None:intergenic |
| TTCGAATGGTTAGCGTAGAT+CGG | 0.471186 | 5.4:-10437820 | None:intergenic |
| CCCCTTTACCCCTATGGCAA+GGG | 0.471821 | 5.4:-10438390 | None:intergenic |
| AGGACTGAGTCCAAGATGAT+AGG | 0.475000 | 5.4:+10439240 | MS.gene010353:CDS |
| TTTGAGTTACTTCCAGGGTA+AGG | 0.478060 | 5.4:+10438165 | MS.gene010353:CDS |
| CAAGGGAAAGAGAACTTTGA+TGG | 0.478759 | 5.4:+10437578 | MS.gene010353:CDS |
| GGCAAGGGGTTGTTTCTCCA+TGG | 0.482176 | 5.4:-10438375 | None:intergenic |
| ATGTGAAACGTGATTCTAAT+GGG | 0.492055 | 5.4:+10437726 | MS.gene010353:CDS |
| AAAGGACTTATATAATTTCA+CGG | 0.493961 | 5.4:+10438096 | MS.gene010353:CDS |
| CTACGAGTTTGAAGTAAGAA+AGG | 0.503537 | 5.4:+10437700 | MS.gene010353:CDS |
| ATATAACCCCTTTACCCCTA+TGG | 0.505461 | 5.4:-10438396 | None:intergenic |
| GTATCACTATATACATCAAA+AGG | 0.509968 | 5.4:-10437359 | None:intergenic |
| CAAGGGTTAAAATAAAAGAT+GGG | 0.510385 | 5.4:+10438128 | MS.gene010353:CDS |
| GGTCAAAAGGGTGGCCATGA+AGG | 0.510809 | 5.4:+10438058 | MS.gene010353:CDS |
| GATGTGAAACGTGATTCTAA+TGG | 0.514927 | 5.4:+10437725 | MS.gene010353:CDS |
| GTTTGCTAAGCTCAGCAAGA+AGG | 0.520099 | 5.4:+10439220 | MS.gene010353:intron |
| GAGAAACAACCCCTTGCCAT+AGG | 0.525206 | 5.4:+10438380 | MS.gene010353:CDS |
| TTGCAAGCCGCCTATCATCT+TGG | 0.527236 | 5.4:-10439250 | None:intergenic |
| AGAAACAACCCCTTGCCATA+GGG | 0.527759 | 5.4:+10438381 | MS.gene010353:CDS |
| AATAAGGAGGGTATTAATGA+TGG | 0.529187 | 5.4:+10437776 | MS.gene010353:CDS |
| AGCTAATTCATGGTTGTGAG+AGG | 0.545517 | 5.4:-10437915 | None:intergenic |
| AGCAACGATGTTTGTACTGA+CGG | 0.549220 | 5.4:+10437506 | MS.gene010353:CDS |
| TGGTAGCGACTAGCAGTGGT+TGG | 0.553705 | 5.4:-10439368 | None:intergenic |
| AAGGGGTTGTTTCTCCATGG+TGG | 0.566504 | 5.4:-10438372 | None:intergenic |
| ACCCCTTTACCCCTATGGCA+AGG | 0.568144 | 5.4:-10438391 | None:intergenic |
| CGAGCCGCCATCAGCAATAG+CGG | 0.571864 | 5.4:-10439321 | None:intergenic |
| GTGGAATTTAACCATGGTAA+TGG | 0.576772 | 5.4:+10437542 | MS.gene010353:CDS |
| TCAATTAGTATGCAATAAGG+AGG | 0.578737 | 5.4:+10437763 | MS.gene010353:CDS |
| CCCTTTACCCCTATGGCAAG+GGG | 0.579715 | 5.4:-10438389 | None:intergenic |
| TGTGACAGATGATGATATAA+GGG | 0.581249 | 5.4:+10437619 | MS.gene010353:CDS |
| GCTAATTCATGGTTGTGAGA+GGG | 0.581523 | 5.4:-10437914 | None:intergenic |
| TATCAGTATCAGCCTTACCC+TGG | 0.582368 | 5.4:-10438177 | None:intergenic |
| AGGGTGGCCATGAAGGACTT+GGG | 0.586883 | 5.4:+10438065 | MS.gene010353:CDS |
| TGTGCAACCGCTATTGCTGA+TGG | 0.589432 | 5.4:+10439314 | MS.gene010353:CDS |
| GGTAGCGACTAGCAGTGGTT+GGG | 0.589687 | 5.4:-10439367 | None:intergenic |
| ATTTCACGGATCATCAGGCA+AGG | 0.592596 | 5.4:+10438110 | MS.gene010353:CDS |
| ATATAGTGATACAGATGAGG+TGG | 0.607738 | 5.4:+10437370 | MS.gene010353:CDS |
| GCTACTTTGAGTTACTTCCA+GGG | 0.608783 | 5.4:+10438160 | MS.gene010353:CDS |
| GACACTGATAGTGATACAGA+TGG | 0.614810 | 5.4:+10437416 | MS.gene010353:CDS |
| GTTGATAAACAAGTTGCTAG+TGG | 0.617676 | 5.4:+10437986 | MS.gene010353:CDS |
| TGATAGTGATACAGATGGGG+TGG | 0.618742 | 5.4:+10437421 | MS.gene010353:CDS |
| AAGGGTTAAAATAAAAGATG+GGG | 0.619179 | 5.4:+10438129 | MS.gene010353:CDS |
| GAAACAACCCCTTGCCATAG+GGG | 0.626017 | 5.4:+10438382 | MS.gene010353:CDS |
| TTTCACGGATCATCAGGCAA+GGG | 0.637022 | 5.4:+10438111 | MS.gene010353:CDS |
| TTTAGTGGATATAACCACCA+TGG | 0.638528 | 5.4:+10438358 | MS.gene010353:CDS |
| CATTGCAAACACCATTACCA+TGG | 0.642035 | 5.4:-10437553 | None:intergenic |
| TGACGGAGATGCAGACGGTG+TGG | 0.643271 | 5.4:+10437523 | MS.gene010353:CDS |
| AATGGTGTTTGCAATGAGCA+AGG | 0.648235 | 5.4:+10437560 | MS.gene010353:CDS |
| GCTAGTGGTCTACATTCGCA+AGG | 0.649023 | 5.4:+10438001 | MS.gene010353:CDS |
| ATCAAATGGACAAAACGCAA+AGG | 0.651947 | 5.4:-10437938 | None:intergenic |
| ATGGTGTTTGCAATGAGCAA+GGG | 0.657603 | 5.4:+10437561 | MS.gene010353:CDS |
| ACACTGATAGTGATACAGAT+GGG | 0.663559 | 5.4:+10437417 | MS.gene010353:CDS |
| CAATTAGTATGCAATAAGGA+GGG | 0.667584 | 5.4:+10437764 | MS.gene010353:CDS |
| AGTATGGTAGCGACTAGCAG+TGG | 0.667677 | 5.4:-10439372 | None:intergenic |
| GACGGTGTGGAATTTAACCA+TGG | 0.688761 | 5.4:+10437536 | MS.gene010353:CDS |
| GCAACCGCTATTGCTGATGG+CGG | 0.689020 | 5.4:+10439317 | MS.gene010353:CDS |
| ACTGAGTCCAAGATGATAGG+CGG | 0.689094 | 5.4:+10439243 | MS.gene010353:CDS |
| TGTATATAGTGATACAGATG+AGG | 0.703043 | 5.4:+10437367 | MS.gene010353:CDS |
| TGTACTGACGGAGATGCAGA+CGG | 0.719254 | 5.4:+10437518 | MS.gene010353:CDS |
| CACTGATAGTGATACAGATG+GGG | 0.724418 | 5.4:+10437418 | MS.gene010353:CDS |
| GGATATGGAATTCAACACAG+AGG | 0.763384 | 5.4:+10437640 | MS.gene010353:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATGTTTTTTTTTTTGAAT+CGG | - | chr5.4:10438540-10438559 | None:intergenic | 10.0% |
| !!! | CAATTTTATTTATGTTTTTA+GGG | - | chr5.4:10438750-10438769 | None:intergenic | 10.0% |
| !!! | TCAATTTTATTTATGTTTTT+AGG | - | chr5.4:10438751-10438770 | None:intergenic | 10.0% |
| !! | AAAGGACTTATATAATTTCA+CGG | + | chr5.4:10438096-10438115 | MS.gene010353:CDS | 20.0% |
| !! | GAGTTTAAATCATATTAAAG+TGG | - | chr5.4:10439195-10439214 | None:intergenic | 20.0% |
| !!! | ATTTTATTAAAACGAGTTCA+AGG | + | chr5.4:10438868-10438887 | MS.gene010353:intron | 20.0% |
| !!! | CATAAATTTTATACAAGATC+AGG | + | chr5.4:10438602-10438621 | MS.gene010353:intron | 20.0% |
| !!! | TTTTATTAAAACGAGTTCAA+GGG | + | chr5.4:10438869-10438888 | MS.gene010353:intron | 20.0% |
| ! | AAGGGTTAAAATAAAAGATG+GGG | + | chr5.4:10438129-10438148 | MS.gene010353:CDS | 25.0% |
| ! | ATATCCACTAAAAATGACAA+GGG | - | chr5.4:10438350-10438369 | None:intergenic | 25.0% |
| ! | CAAAATTTATTAAGCTAAGG+AGG | - | chr5.4:10438517-10438536 | None:intergenic | 25.0% |
| ! | CAAGGGTTAAAATAAAAGAT+GGG | + | chr5.4:10438128-10438147 | MS.gene010353:CDS | 25.0% |
| ! | GACATATGAGTATACTTAAA+TGG | + | chr5.4:10438624-10438643 | MS.gene010353:intron | 25.0% |
| ! | GATGGAAAAAATAAGAAGAA+TGG | + | chr5.4:10437794-10437813 | MS.gene010353:CDS | 25.0% |
| ! | GTATCACTATATACATCAAA+AGG | - | chr5.4:10437362-10437381 | None:intergenic | 25.0% |
| ! | TATATCCACTAAAAATGACA+AGG | - | chr5.4:10438351-10438370 | None:intergenic | 25.0% |
| ! | TCATGTAATTTCATCGTAAT+AGG | - | chr5.4:10438905-10438924 | None:intergenic | 25.0% |
| ! | TTTATTAAAACGAGTTCAAG+GGG | + | chr5.4:10438870-10438889 | MS.gene010353:intron | 25.0% |
| !! | ATATAGCATGATTTTACAGA+AGG | + | chr5.4:10438966-10438985 | MS.gene010353:intron | 25.0% |
| !! | CTTTTGTATTTATCTCTTTG+TGG | + | chr5.4:10438469-10438488 | MS.gene010353:intron | 25.0% |
| AAGATTCATCATCAGCAATA+GGG | - | chr5.4:10439284-10439303 | None:intergenic | 30.0% | |
| ACCTATAGAAAGAACAAGTA+TGG | + | chr5.4:10438319-10438338 | MS.gene010353:CDS | 30.0% | |
| ACTTAATTGAAGCTACTCTT+TGG | - | chr5.4:10438825-10438844 | None:intergenic | 30.0% | |
| AGATGATGATATAAGGGATA+TGG | + | chr5.4:10437625-10437644 | MS.gene010353:CDS | 30.0% | |
| ATACTTGTTCTTTCTATAGG+TGG | - | chr5.4:10438320-10438339 | None:intergenic | 30.0% | |
| ATATAATTTCACGGATCATC+AGG | + | chr5.4:10438105-10438124 | MS.gene010353:CDS | 30.0% | |
| ATGTGAAACGTGATTCTAAT+GGG | + | chr5.4:10437726-10437745 | MS.gene010353:CDS | 30.0% | |
| ATGTGACAGATGATGATATA+AGG | + | chr5.4:10437618-10437637 | MS.gene010353:CDS | 30.0% | |
| CAATTAGTATGCAATAAGGA+GGG | + | chr5.4:10437764-10437783 | MS.gene010353:CDS | 30.0% | |
| CGGCAAAATTTATTAAGCTA+AGG | - | chr5.4:10438520-10438539 | None:intergenic | 30.0% | |
| GAGTTTACATTTACAGATGA+TGG | + | chr5.4:10438214-10438233 | MS.gene010353:CDS | 30.0% | |
| GCAAGGGTTAAAATAAAAGA+TGG | + | chr5.4:10438127-10438146 | MS.gene010353:CDS | 30.0% | |
| GTAAGAACATGTCATATCTT+GGG | + | chr5.4:10438025-10438044 | MS.gene010353:CDS | 30.0% | |
| TATCAACTTCACTCAATTTG+CGG | - | chr5.4:10437973-10437992 | None:intergenic | 30.0% | |
| TATCCACTAAAAATGACAAG+GGG | - | chr5.4:10438349-10438368 | None:intergenic | 30.0% | |
| TCAATTAGTATGCAATAAGG+AGG | + | chr5.4:10437763-10437782 | MS.gene010353:CDS | 30.0% | |
| TCCATACTTGTTCTTTCTAT+AGG | - | chr5.4:10438323-10438342 | None:intergenic | 30.0% | |
| TGTAAGAACATGTCATATCT+TGG | + | chr5.4:10438024-10438043 | MS.gene010353:CDS | 30.0% | |
| TGTATATAGTGATACAGATG+AGG | + | chr5.4:10437367-10437386 | MS.gene010353:CDS | 30.0% | |
| TGTGACAGATGATGATATAA+GGG | + | chr5.4:10437619-10437638 | MS.gene010353:CDS | 30.0% | |
| ! | ATGTGGTTGATTCATGTAAT+TGG | - | chr5.4:10439021-10439040 | None:intergenic | 30.0% |
| !! | AATAAGGAGGGTATTAATGA+TGG | + | chr5.4:10437776-10437795 | MS.gene010353:CDS | 30.0% |
| !!! | ACGCCTAGAAAACATTTTTT+GGG | + | chr5.4:10438237-10438256 | MS.gene010353:CDS | 30.0% |
| !!! | GGGTTATATATGGAGTTTTT+TGG | + | chr5.4:10438410-10438429 | MS.gene010353:intron | 30.0% |
| AAAAAAAAGTCCCCCGAATT+CGG | + | chr5.4:10438992-10439011 | MS.gene010353:intron | 35.0% | |
| AGGACTTGGGTTTATCAAAA+AGG | + | chr5.4:10438078-10438097 | MS.gene010353:CDS | 35.0% | |
| ATATAGTGATACAGATGAGG+TGG | + | chr5.4:10437370-10437389 | MS.gene010353:CDS | 35.0% | |
| ATATATGCAGAACACCTCAA+TGG | - | chr5.4:10438443-10438462 | None:intergenic | 35.0% | |
| ATCAAATGGACAAAACGCAA+AGG | - | chr5.4:10437941-10437960 | None:intergenic | 35.0% | |
| ATGTAATTGGTTGCCGAATT+CGG | - | chr5.4:10439008-10439027 | None:intergenic | 35.0% | |
| ATTTATCTCTTTGTGGTCCA+AGG | + | chr5.4:10438476-10438495 | MS.gene010353:intron | 35.0% | |
| GAAGATTCATCATCAGCAAT+AGG | - | chr5.4:10439285-10439304 | None:intergenic | 35.0% | |
| GATGTGAAACGTGATTCTAA+TGG | + | chr5.4:10437725-10437744 | MS.gene010353:CDS | 35.0% | |
| GCGTCAATTAGTATGCAATA+AGG | + | chr5.4:10437760-10437779 | MS.gene010353:CDS | 35.0% | |
| GTGGAATTTAACCATGGTAA+TGG | + | chr5.4:10437542-10437561 | MS.gene010353:CDS | 35.0% | |
| TATAGAAGACGAAATCTGCA+AGG | - | chr5.4:10438568-10438587 | None:intergenic | 35.0% | |
| TCACTCAATTTGCGGTAATT+AGG | - | chr5.4:10437965-10437984 | None:intergenic | 35.0% | |
| TTACATGAATCAACCACATC+AGG | + | chr5.4:10439022-10439041 | MS.gene010353:intron | 35.0% | |
| ! | ACACTGATAGTGATACAGAT+GGG | + | chr5.4:10437417-10437436 | MS.gene010353:CDS | 35.0% |
| ! | AGGTTTGACTATGAGTGTTT+TGG | + | chr5.4:10438274-10438293 | MS.gene010353:CDS | 35.0% |
| ! | CATATCTTGGGCTTTTTGAT+GGG | + | chr5.4:10438037-10438056 | MS.gene010353:CDS | 35.0% |
| ! | CTACGAGTTTGAAGTAAGAA+AGG | + | chr5.4:10437700-10437719 | MS.gene010353:CDS | 35.0% |
| ! | CTGCCCAAAAAATGTTTTCT+AGG | - | chr5.4:10438243-10438262 | None:intergenic | 35.0% |
| ! | GTTGATAAACAAGTTGCTAG+TGG | + | chr5.4:10437986-10438005 | MS.gene010353:CDS | 35.0% |
| ! | TCATATCTTGGGCTTTTTGA+TGG | + | chr5.4:10438036-10438055 | MS.gene010353:CDS | 35.0% |
| ! | TTTAGTGGATATAACCACCA+TGG | + | chr5.4:10438358-10438377 | MS.gene010353:CDS | 35.0% |
| !! | TTGCTGTAGAGTAACTTGTT+TGG | - | chr5.4:10439083-10439102 | None:intergenic | 35.0% |
| !!! | AAACCCCTTGTCATTTTTAG+TGG | + | chr5.4:10438343-10438362 | MS.gene010353:CDS | 35.0% |
| !!! | GACGCCTAGAAAACATTTTT+TGG | + | chr5.4:10438236-10438255 | MS.gene010353:CDS | 35.0% |
| AACGCAAAGGAGCTAATTCA+TGG | - | chr5.4:10437928-10437947 | None:intergenic | 40.0% | |
| AATGGTGTTTGCAATGAGCA+AGG | + | chr5.4:10437560-10437579 | MS.gene010353:CDS | 40.0% | |
| ACGACTTTGTTCGTACGATT+TGG | + | chr5.4:10437873-10437892 | MS.gene010353:CDS | 40.0% | |
| AGCAACGATGTTTGTACTGA+CGG | + | chr5.4:10437506-10437525 | MS.gene010353:CDS | 40.0% | |
| AGCTAATTCATGGTTGTGAG+AGG | - | chr5.4:10437918-10437937 | None:intergenic | 40.0% | |
| AGGGGTAAAGGGGTTATATA+TGG | + | chr5.4:10438400-10438419 | MS.gene010353:intron | 40.0% | |
| ATATAACCCCTTTACCCCTA+TGG | - | chr5.4:10438399-10438418 | None:intergenic | 40.0% | |
| ATGGTGTTTGCAATGAGCAA+GGG | + | chr5.4:10437561-10437580 | MS.gene010353:CDS | 40.0% | |
| CAAGGGAAAGAGAACTTTGA+TGG | + | chr5.4:10437578-10437597 | MS.gene010353:CDS | 40.0% | |
| CATTGCAAACACCATTACCA+TGG | - | chr5.4:10437556-10437575 | None:intergenic | 40.0% | |
| CGCAGAACAATTAGTTCGAA+TGG | - | chr5.4:10437837-10437856 | None:intergenic | 40.0% | |
| GCTAATTCATGGTTGTGAGA+GGG | - | chr5.4:10437917-10437936 | None:intergenic | 40.0% | |
| GGATATGGAATTCAACACAG+AGG | + | chr5.4:10437640-10437659 | MS.gene010353:CDS | 40.0% | |
| TGATAAACCCAAGTCCTTCA+TGG | - | chr5.4:10438075-10438094 | None:intergenic | 40.0% | |
| TGCGGTAATTAGGCATCAAA+TGG | - | chr5.4:10437955-10437974 | None:intergenic | 40.0% | |
| TGTAATTGGTTGCCGAATTC+GGG | - | chr5.4:10439007-10439026 | None:intergenic | 40.0% | |
| TTCGAATGGTTAGCGTAGAT+CGG | - | chr5.4:10437823-10437842 | None:intergenic | 40.0% | |
| TTTGGGCAGATTCTACTAGT+AGG | + | chr5.4:10438254-10438273 | MS.gene010353:CDS | 40.0% | |
| ! | ATCATCAGCAATAGGGCTTT+TGG | - | chr5.4:10439277-10439296 | None:intergenic | 40.0% |
| ! | CACTGATAGTGATACAGATG+GGG | + | chr5.4:10437418-10437437 | MS.gene010353:CDS | 40.0% |
| ! | GACACTGATAGTGATACAGA+TGG | + | chr5.4:10437416-10437435 | MS.gene010353:CDS | 40.0% |
| ! | GCTACTTTGAGTTACTTCCA+GGG | + | chr5.4:10438160-10438179 | MS.gene010353:CDS | 40.0% |
| ! | TGGGTATAACACGACACTTT+TGG | - | chr5.4:10439351-10439370 | None:intergenic | 40.0% |
| ! | TTTGAGTTACTTCCAGGGTA+AGG | + | chr5.4:10438165-10438184 | MS.gene010353:CDS | 40.0% |
| !! | GGCTTTTTGATGGGTCAAAA+GGG | + | chr5.4:10438046-10438065 | MS.gene010353:CDS | 40.0% |
| !! | TGCTACTTTGAGTTACTTCC+AGG | + | chr5.4:10438159-10438178 | MS.gene010353:CDS | 40.0% |
| !! | TTTTTGATGGGTCAAAAGGG+TGG | + | chr5.4:10438049-10438068 | MS.gene010353:CDS | 40.0% |
| ACTGAGTCCAAGATGATAGG+CGG | + | chr5.4:10439243-10439262 | MS.gene010353:CDS | 45.0% | |
| AGAAACAACCCCTTGCCATA+GGG | + | chr5.4:10438381-10438400 | MS.gene010353:CDS | 45.0% | |
| AGAAGACGAAATCTGCAAGG+AGG | - | chr5.4:10438565-10438584 | None:intergenic | 45.0% | |
| AGGACTGAGTCCAAGATGAT+AGG | + | chr5.4:10439240-10439259 | MS.gene010353:CDS | 45.0% | |
| ATGCAGAACACCTCAATGGT+GGG | - | chr5.4:10438439-10438458 | None:intergenic | 45.0% | |
| ATTTCACGGATCATCAGGCA+AGG | + | chr5.4:10438110-10438129 | MS.gene010353:CDS | 45.0% | |
| CTCTTTGTGGTCCAAGGTTT+GGG | + | chr5.4:10438482-10438501 | MS.gene010353:intron | 45.0% | |
| GACGGTGTGGAATTTAACCA+TGG | + | chr5.4:10437536-10437555 | MS.gene010353:CDS | 45.0% | |
| GGTGAAAGAAACCCAAACCT+TGG | - | chr5.4:10438496-10438515 | None:intergenic | 45.0% | |
| GTAATTGGTTGCCGAATTCG+GGG | - | chr5.4:10439006-10439025 | None:intergenic | 45.0% | |
| TAATTGGTTGCCGAATTCGG+GGG | - | chr5.4:10439005-10439024 | None:intergenic | 45.0% | |
| TATCAGTATCAGCCTTACCC+TGG | - | chr5.4:10438180-10438199 | None:intergenic | 45.0% | |
| TATGCAGAACACCTCAATGG+TGG | - | chr5.4:10438440-10438459 | None:intergenic | 45.0% | |
| TCTCTTTGTGGTCCAAGGTT+TGG | + | chr5.4:10438481-10438500 | MS.gene010353:intron | 45.0% | |
| TTTCACGGATCATCAGGCAA+GGG | + | chr5.4:10438111-10438130 | MS.gene010353:CDS | 45.0% | |
| ! | GTTTGCTAAGCTCAGCAAGA+AGG | + | chr5.4:10439220-10439239 | MS.gene010353:intron | 45.0% |
| ! | TGATAGTGATACAGATGGGG+TGG | + | chr5.4:10437421-10437440 | MS.gene010353:CDS | 45.0% |
| !! | GGGCTTTTTGATGGGTCAAA+AGG | + | chr5.4:10438045-10438064 | MS.gene010353:CDS | 45.0% |
| GAAACAACCCCTTGCCATAG+GGG | + | chr5.4:10438382-10438401 | MS.gene010353:CDS | 50.0% | |
| GAATCAACCACATCAGGCCT+CGG | + | chr5.4:10439028-10439047 | MS.gene010353:intron | 50.0% | |
| GAGAAACAACCCCTTGCCAT+AGG | + | chr5.4:10438380-10438399 | MS.gene010353:CDS | 50.0% | |
| GCTAGTGGTCTACATTCGCA+AGG | + | chr5.4:10438001-10438020 | MS.gene010353:CDS | 50.0% | |
| TGTGCAACCGCTATTGCTGA+TGG | + | chr5.4:10439314-10439333 | MS.gene010353:CDS | 50.0% | |
| TTGCAAGCCGCCTATCATCT+TGG | - | chr5.4:10439253-10439272 | None:intergenic | 50.0% | |
| ! | AGTATGGTAGCGACTAGCAG+TGG | - | chr5.4:10439375-10439394 | None:intergenic | 50.0% |
| ! | TGTACTGACGGAGATGCAGA+CGG | + | chr5.4:10437518-10437537 | MS.gene010353:CDS | 50.0% |
| !! | AAGGGGTTGTTTCTCCATGG+TGG | - | chr5.4:10438375-10438394 | None:intergenic | 50.0% |
| !! | TTTTTGGCGTCCCACCATTG+AGG | + | chr5.4:10438426-10438445 | MS.gene010353:intron | 50.0% |
| AAGGGTGGCCATGAAGGACT+TGG | + | chr5.4:10438064-10438083 | MS.gene010353:CDS | 55.0% | |
| ACCCCTTGCCATAGGGGTAA+AGG | + | chr5.4:10438388-10438407 | MS.gene010353:intron | 55.0% | |
| ACCCCTTTACCCCTATGGCA+AGG | - | chr5.4:10438394-10438413 | None:intergenic | 55.0% | |
| AGGGTGGCCATGAAGGACTT+GGG | + | chr5.4:10438065-10438084 | MS.gene010353:CDS | 55.0% | |
| CCCCTTGCCATAGGGGTAAA+GGG | + | chr5.4:10438389-10438408 | MS.gene010353:intron | 55.0% | |
| CCCCTTTACCCCTATGGCAA+GGG | - | chr5.4:10438393-10438412 | None:intergenic | 55.0% | |
| CCCTTGCCATAGGGGTAAAG+GGG | + | chr5.4:10438390-10438409 | MS.gene010353:intron | 55.0% | |
| CCCTTTACCCCTATGGCAAG+GGG | - | chr5.4:10438392-10438411 | None:intergenic | 55.0% | |
| GCAACCGCTATTGCTGATGG+CGG | + | chr5.4:10439317-10439336 | MS.gene010353:CDS | 55.0% | |
| GGTAGCGACTAGCAGTGGTT+GGG | - | chr5.4:10439370-10439389 | None:intergenic | 55.0% | |
| GGTCAAAAGGGTGGCCATGA+AGG | + | chr5.4:10438058-10438077 | MS.gene010353:CDS | 55.0% | |
| TGATAGTCCGAGGCCTGATG+TGG | - | chr5.4:10439038-10439057 | None:intergenic | 55.0% | |
| ! | TGGTAGCGACTAGCAGTGGT+TGG | - | chr5.4:10439371-10439390 | None:intergenic | 55.0% |
| !! | GGCAAGGGGTTGTTTCTCCA+TGG | - | chr5.4:10438378-10438397 | None:intergenic | 55.0% |
| CGAGCCGCCATCAGCAATAG+CGG | - | chr5.4:10439324-10439343 | None:intergenic | 60.0% | |
| GCCTCGGACTATCAGAGTGC+AGG | + | chr5.4:10439044-10439063 | MS.gene010353:intron | 60.0% | |
| GCCTGCACTCTGATAGTCCG+AGG | - | chr5.4:10439048-10439067 | None:intergenic | 60.0% | |
| TGACGGAGATGCAGACGGTG+TGG | + | chr5.4:10437523-10437542 | MS.gene010353:CDS | 60.0% | |
| !! | TATTGCTGATGGCGGCTCGC+TGG | + | chr5.4:10439325-10439344 | MS.gene010353:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 10437332 | 10439401 | 10437332 | ID=MS.gene010353 |
| chr5.4 | mRNA | 10437332 | 10439401 | 10437332 | ID=MS.gene010353.t1;Parent=MS.gene010353 |
| chr5.4 | exon | 10437332 | 10438403 | 10437332 | ID=MS.gene010353.t1.exon1;Parent=MS.gene010353.t1 |
| chr5.4 | CDS | 10437332 | 10438403 | 10437332 | ID=cds.MS.gene010353.t1;Parent=MS.gene010353.t1 |
| chr5.4 | exon | 10439235 | 10439401 | 10439235 | ID=MS.gene010353.t1.exon2;Parent=MS.gene010353.t1 |
| chr5.4 | CDS | 10439235 | 10439401 | 10439235 | ID=cds.MS.gene010353.t1;Parent=MS.gene010353.t1 |
| Gene Sequence |
| Protein sequence |
