AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene010395

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010395.t1 MTR_5g017950 99.369 317 1 1 1 316 1 317 0.0 636
MS.gene010395.t1 MTR_3g073690 77.236 123 28 0 1 123 2 124 1.01e-66 208
MS.gene010395.t1 MTR_3g452660 43.202 331 121 11 3 313 2 285 1.45e-61 198
MS.gene010395.t1 MTR_3g077240 68.182 110 35 0 2 111 4 113 2.01e-49 163
MS.gene010395.t1 MTR_7g033800 66.364 110 37 0 2 111 5 114 4.14e-49 162
MS.gene010395.t1 MTR_4g105170 69.811 106 32 0 6 111 9 114 4.26e-49 162
MS.gene010395.t1 MTR_6g005070 67.290 107 35 0 2 108 3 109 1.27e-48 159
MS.gene010395.t1 MTR_6g005080 62.727 110 41 0 2 111 4 113 1.26e-46 154
MS.gene010395.t1 MTR_8g040900 73.394 109 29 0 3 111 2 110 1.27e-46 157
MS.gene010395.t1 MTR_5g083230 59.200 125 50 1 6 130 4 127 1.25e-44 150
MS.gene010395.t1 MTR_3g031660 60.952 105 41 0 4 108 3 107 6.13e-43 146
MS.gene010395.t1 MTR_5g083960 60.748 107 42 0 5 111 36 142 5.52e-42 144
MS.gene010395.t1 MTR_3g071590 58.333 108 45 0 1 108 1 108 1.38e-41 142
MS.gene010395.t1 MTR_4g083680 63.366 101 37 0 7 107 14 114 2.89e-41 142
MS.gene010395.t1 MTR_2g068760 61.165 103 40 0 7 109 12 114 1.68e-40 139
MS.gene010395.t1 MTR_3g094690 60.000 105 42 0 7 111 46 150 3.96e-40 140
MS.gene010395.t1 MTR_5g083010 60.952 105 41 0 5 109 8 112 2.06e-39 137
MS.gene010395.t1 MTR_8g079660 46.309 149 63 3 8 153 8 142 4.57e-39 139
MS.gene010395.t1 MTR_2g093310 56.863 102 44 0 7 108 32 133 1.07e-38 135
MS.gene010395.t1 MTR_3g071420 60.784 102 40 0 5 106 11 112 1.85e-38 135
MS.gene010395.t1 MTR_8g079620 53.982 113 52 0 8 120 8 120 9.96e-38 134
MS.gene010395.t1 MTR_3g094690 59.048 105 42 1 7 111 46 149 1.10e-37 134
MS.gene010395.t1 MTR_7g096530 48.889 135 68 1 2 135 8 142 2.50e-36 130
MS.gene010395.t1 MTR_1g095850 56.436 101 44 0 9 109 73 173 3.01e-36 130
MS.gene010395.t1 MTR_4g060950 54.808 104 46 1 7 109 23 126 5.24e-36 128
MS.gene010395.t1 MTR_5g075020 60.000 105 42 0 7 111 42 146 9.19e-36 129
MS.gene010395.t1 MTR_5g075020 60.000 105 42 0 7 111 46 150 1.44e-35 129
MS.gene010395.t1 MTR_1g070220 56.190 105 45 1 4 107 11 115 5.26e-34 124
MS.gene010395.t1 MTR_8g079580 48.760 121 61 1 1 120 1 121 8.45e-34 124
MS.gene010395.t1 MTR_8g036085 55.238 105 46 1 8 111 23 127 4.31e-33 122
MS.gene010395.t1 MTR_8g036105 52.542 118 49 2 8 124 18 129 5.80e-33 121
MS.gene010395.t1 MTR_7g074990 56.863 102 43 1 8 108 20 121 5.90e-33 122
MS.gene010395.t1 MTR_6g027710 52.427 103 48 1 7 108 39 141 1.14e-31 118
MS.gene010395.t1 MTR_7g028905 48.544 103 53 0 7 109 4 106 1.64e-31 114
MS.gene010395.t1 MTR_7g096610 53.922 102 46 1 1 101 1 102 1.67e-30 115
MS.gene010395.t1 MTR_5g093010 46.602 103 55 0 9 111 6 108 3.03e-30 112
MS.gene010395.t1 MTR_5g080470 52.577 97 45 1 7 102 6 102 8.70e-30 112
MS.gene010395.t1 MTR_6g027700 41.259 143 82 2 8 148 7 149 3.92e-29 111
MS.gene010395.t1 MTR_1g070205 51.456 103 49 1 8 109 12 114 5.83e-29 111
MS.gene010395.t1 MTR_6g011200 46.667 105 55 1 6 109 7 111 2.38e-28 110
MS.gene010395.t1 MTR_7g075230 51.887 106 48 2 8 110 12 117 4.07e-27 105
MS.gene010395.t1 MTR_6g011230 42.574 101 58 0 5 105 8 108 1.45e-26 104
MS.gene010395.t1 MTR_6g011250 45.794 107 57 1 5 110 6 112 1.11e-25 101
MS.gene010395.t1 MTR_4g107450 46.000 100 54 0 9 108 11 110 9.10e-25 101
MS.gene010395.t1 MTR_4g099230 37.879 132 77 3 9 139 3 130 9.12e-25 98.2
MS.gene010395.t1 MTR_8g017090 38.835 103 63 0 9 111 13 115 8.75e-22 93.6
MS.gene010395.t1 MTR_5g085390 40.952 105 61 1 6 109 7 111 1.21e-20 89.4
MS.gene010395.t1 MTR_2g100020 35.294 102 66 0 9 110 20 121 9.82e-19 84.7
MS.gene010395.t1 MTR_4g088035 34.884 86 56 0 9 94 7 92 1.84e-14 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010395.t1 AT5G66870 53.689 244 83 7 3 229 2 232 2.71e-69 218
MS.gene010395.t1 AT2G23660 43.226 310 129 12 5 303 2 275 2.69e-65 208
MS.gene010395.t1 AT2G23660 43.226 310 129 12 5 303 2 275 2.69e-65 208
MS.gene010395.t1 AT2G23660 43.226 310 129 12 5 303 2 275 2.69e-65 208
MS.gene010395.t1 AT1G65620 77.273 110 25 0 2 111 3 112 8.78e-50 164
MS.gene010395.t1 AT1G65620 77.273 110 25 0 2 111 3 112 8.78e-50 164
MS.gene010395.t1 AT1G65620 77.273 110 25 0 2 111 3 112 8.78e-50 164
MS.gene010395.t1 AT1G65620 77.273 110 25 0 2 111 3 112 8.78e-50 164
MS.gene010395.t1 AT1G65620 77.273 110 25 0 2 111 3 112 8.78e-50 164
MS.gene010395.t1 AT5G63090 62.400 125 47 0 2 126 5 129 1.31e-49 164
MS.gene010395.t1 AT5G63090 62.400 125 47 0 2 126 5 129 1.31e-49 164
MS.gene010395.t1 AT5G63090 62.400 125 47 0 2 126 5 129 1.31e-49 164
MS.gene010395.t1 AT5G63090 62.400 125 47 0 2 126 5 129 1.31e-49 164
MS.gene010395.t1 AT3G27650 64.602 113 40 0 1 113 32 144 2.39e-49 162
MS.gene010395.t1 AT2G30130 60.185 108 43 0 1 108 1 108 4.19e-43 147
MS.gene010395.t1 AT2G30340 52.381 126 55 1 7 132 52 172 7.04e-40 141
MS.gene010395.t1 AT2G30340 52.381 126 55 1 7 132 51 171 7.08e-40 141
MS.gene010395.t1 AT1G07900 50.388 129 62 1 7 133 32 160 1.09e-39 138
MS.gene010395.t1 AT1G31320 69.318 88 27 0 7 94 12 99 1.81e-39 137
MS.gene010395.t1 AT1G16530 60.194 103 40 1 7 108 13 115 5.05e-38 133
MS.gene010395.t1 AT2G28500 56.311 103 45 0 7 109 54 156 8.90e-38 134
MS.gene010395.t1 AT3G26660 52.941 102 48 0 9 110 6 107 2.40e-37 130
MS.gene010395.t1 AT3G26620 52.941 102 48 0 9 110 6 107 3.17e-37 129
MS.gene010395.t1 AT2G40470 60.000 105 42 0 7 111 19 123 2.17e-36 130
MS.gene010395.t1 AT2G40470 60.000 105 42 0 7 111 44 148 2.82e-36 130
MS.gene010395.t1 AT3G11090 55.963 109 48 0 5 113 8 116 5.43e-36 127
MS.gene010395.t1 AT4G00210 53.719 121 49 2 2 121 5 119 1.49e-35 128
MS.gene010395.t1 AT3G50510 45.455 143 73 3 6 146 10 149 1.80e-34 125
MS.gene010395.t1 AT3G50510 45.455 143 73 3 6 146 10 149 1.80e-34 125
MS.gene010395.t1 AT3G03760 56.311 103 44 1 7 108 50 152 4.68e-34 126
MS.gene010395.t1 AT2G42430 51.376 109 52 1 2 109 9 117 5.36e-32 120
MS.gene010395.t1 AT4G00220 55.446 101 44 1 11 110 20 120 1.85e-30 115
MS.gene010395.t1 AT2G45410 48.872 133 55 3 11 136 19 145 2.36e-30 114
MS.gene010395.t1 AT3G58190 52.427 103 48 1 8 109 11 113 5.46e-30 114
MS.gene010395.t1 AT5G35900 41.912 136 72 3 9 142 6 136 1.01e-29 112
MS.gene010395.t1 AT2G31310 50.000 102 50 1 7 107 6 107 8.18e-29 109
MS.gene010395.t1 AT2G45420 52.475 101 47 1 11 110 40 140 1.93e-28 110
MS.gene010395.t1 AT5G06080 52.000 100 47 1 3 101 2 101 1.87e-27 105
MS.gene010395.t1 AT2G42440 48.113 106 54 1 3 107 2 107 4.56e-27 106
MS.gene010395.t1 AT3G13850 40.777 103 61 0 9 111 37 139 2.43e-25 102
MS.gene010395.t1 AT3G47870 36.937 111 70 0 1 111 29 139 5.31e-24 100
MS.gene010395.t1 AT1G72980 42.056 107 62 0 2 108 7 113 7.25e-24 97.4
MS.gene010395.t1 AT4G22700 38.679 106 63 2 9 113 6 110 1.90e-19 85.1
MS.gene010395.t1 AT1G06280 38.947 95 58 0 9 103 25 119 5.98e-18 81.3
MS.gene010395.t1 AT2G19820 34.021 97 63 1 7 102 11 107 1.63e-13 66.6
MS.gene010395.t1 AT3G27940 27.826 115 83 0 7 121 4 118 6.31e-12 63.2
MS.gene010395.t1 AT3G27940 27.826 115 83 0 7 121 4 118 6.31e-12 63.2
MS.gene010395.t1 AT3G27940 27.826 115 83 0 7 121 4 118 6.31e-12 63.2

Find 74 sgRNAs with CRISPR-Local

Find 82 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATCAATTGTCTCCTTCTT+TGG 0.211819 5.4:+10917539 MS.gene010395:CDS
ATTGTCTCCTTCTTTGGCTT+TGG 0.232947 5.4:+10917545 MS.gene010395:CDS
CGGCTGAGGGATCCGGTTTA+TGG 0.239083 5.4:+10917048 MS.gene010395:CDS
TTGTCTCCTTCTTTGGCTTT+GGG 0.248585 5.4:+10917546 MS.gene010395:CDS
GCGGGAACACCACCATTATA+AGG 0.261368 5.4:-10917246 None:intergenic
AATTCTCTTTACCCTTATAA+TGG 0.295168 5.4:+10917234 MS.gene010395:CDS
GCAACACCAACAGCAGAAAC+TGG 0.315263 5.4:-10917513 None:intergenic
AAGGAACTTGCTACTTATAT+TGG 0.327213 5.4:+10917141 MS.gene010395:CDS
CAGCAGCATAATAACCCTTT+TGG 0.373437 5.4:+10917210 MS.gene010395:CDS
TCATCATCATCTTCCACTTC+AGG 0.390138 5.4:+10917653 MS.gene010395:CDS
TGTACATATGCAAATCTTTG+AGG 0.398921 5.4:-10916925 None:intergenic
TCTAATTCTTCTGCTGGTGG+TGG 0.400810 5.4:+10917474 MS.gene010395:CDS
TCAGTTTCTAATTCTTCTGC+TGG 0.413224 5.4:+10917468 MS.gene010395:CDS
GTCTGTTGTTGATGAGTTTG+TGG 0.423662 5.4:-10917714 None:intergenic
ATGAGGCCGAGGCGCGGCTG+AGG 0.424591 5.4:+10917034 MS.gene010395:CDS
GCCGCAGCAGGCGTCTGCTG+CGG 0.439247 5.4:-10917303 None:intergenic
GGTTAAGTCGTTGGCTTATG+AGG 0.447260 5.4:+10917017 MS.gene010395:CDS
CGAGGCGCGGCTGAGGGATC+CGG 0.449579 5.4:+10917041 MS.gene010395:CDS
ATTGGTCCTCAGGCGCTTCA+AGG 0.451437 5.4:+10917159 MS.gene010395:CDS
CCGCAGCAGGCGTCTGCTGC+GGG 0.454243 5.4:-10917302 None:intergenic
AGTAACCGCGGGTGCACAAA+TGG 0.457040 5.4:+10917269 MS.gene010395:CDS
TGCTACTTATATTGGTCCTC+AGG 0.459742 5.4:+10917149 MS.gene010395:CDS
TTGTGCACCCGCGGTTACTG+CGG 0.462275 5.4:-10917265 None:intergenic
CTAATTCTTCTGCTGGTGGT+GGG 0.463044 5.4:+10917475 MS.gene010395:CDS
CGGGAACACCACCATTATAA+GGG 0.465460 5.4:-10917245 None:intergenic
ATCTGATGTTGAGCCGCAGC+AGG 0.471893 5.4:-10917315 None:intergenic
GATCTTGGAAGCTCAACAAT+TGG 0.474204 5.4:+10917335 MS.gene010395:CDS
CAGCAGAAACTGGGGACACT+TGG 0.475268 5.4:-10917503 None:intergenic
GGCTGTGCTTGCTTCTGTTG+TGG 0.478322 5.4:-10917693 None:intergenic
GCAAATCTTTGAGGATTGTC+CGG 0.480888 5.4:-10916916 None:intergenic
GGGTAAAGAGAATTACCAAA+AGG 0.483287 5.4:-10917225 None:intergenic
TGAACTTAATAATGCTAAGA+AGG 0.486169 5.4:+10917122 MS.gene010395:CDS
CAACACCAACAGCAGAAACT+GGG 0.487780 5.4:-10917512 None:intergenic
TGTGCACCCGCGGTTACTGC+GGG 0.494263 5.4:-10917264 None:intergenic
TGCGGCTCAACATCAGATCT+TGG 0.495170 5.4:+10917320 MS.gene010395:CDS
GATCCGGTTTATGGTTGTGT+TGG 0.495699 5.4:+10917057 MS.gene010395:CDS
AGACCAACACAACCATAAAC+CGG 0.496772 5.4:-10917060 None:intergenic
GTGTCCCCAGTTTCTGCTGT+TGG 0.507305 5.4:+10917507 MS.gene010395:CDS
GTGCGGCGTGTAAGTTTCTC+CGG 0.509242 5.4:+10916851 MS.gene010395:CDS
GGTAAAGAGAATTACCAAAA+GGG 0.512111 5.4:-10917224 None:intergenic
AGCGAGGAGTGTAGGAGTGT+TGG 0.514933 5.4:+10917741 MS.gene010395:CDS
CATAAGCTAAGAGCTATTCA+AGG 0.519225 5.4:+10917099 MS.gene010395:CDS
TGATGACGCGGTTAAGTCGT+TGG 0.519238 5.4:+10917008 MS.gene010395:CDS
GGATTGTCCGGTGGAAAATA+CGG 0.519970 5.4:-10916904 None:intergenic
CGGATCCCTCAGCCGCGCCT+CGG 0.522353 5.4:-10917040 None:intergenic
TGAGGCCGAGGCGCGGCTGA+GGG 0.524798 5.4:+10917035 MS.gene010395:CDS
GGTGTTCCCGCAGTAACCGC+GGG 0.528814 5.4:+10917258 MS.gene010395:CDS
GTTTCTAATTCTTCTGCTGG+TGG 0.536833 5.4:+10917471 MS.gene010395:CDS
GAGTGTAGGAGTGTTGGACT+TGG 0.536956 5.4:+10917747 MS.gene010395:CDS
AGACGGAAAGCGAGGAGTGT+AGG 0.539133 5.4:+10917733 MS.gene010395:CDS
GTTTAGTGGTGGGTTTGATG+TGG 0.541632 5.4:+10917443 MS.gene010395:CDS
AAAGATCCCAAAGCCAAAGA+AGG 0.541675 5.4:-10917552 None:intergenic
TGTTGCTGAAGAATCGTTGT+GGG 0.541846 5.4:-10917186 None:intergenic
CCCGCAGCAGACGCCTGCTG+CGG 0.542542 5.4:+10917302 MS.gene010395:CDS
TCTCTTTACCCTTATAATGG+TGG 0.546514 5.4:+10917237 MS.gene010395:CDS
GTCGTTGGCTTATGAGGCCG+AGG 0.551333 5.4:+10917023 MS.gene010395:CDS
CAACAAGCACAACAAGGACA+AGG 0.557226 5.4:+10917597 MS.gene010395:CDS
CGCGACGCAGCGTGATGACG+CGG 0.567241 5.4:+10916996 MS.gene010395:CDS
ATCATCAAATTCACCGTGTG+CGG 0.568953 5.4:+10916834 MS.gene010395:CDS
AACACCAACAGCAGAAACTG+GGG 0.572504 5.4:-10917511 None:intergenic
TGGTGTTCCCGCAGTAACCG+CGG 0.578875 5.4:+10917257 MS.gene010395:CDS
TGTGCTTGCTTCTGTTGTGG+TGG 0.587755 5.4:-10917690 None:intergenic
AGTAATAGCTGAGCCTGAAG+TGG 0.590089 5.4:-10917666 None:intergenic
TGGCTTATGAGGCCGAGGCG+CGG 0.601042 5.4:+10917028 MS.gene010395:CDS
CTGTTGCTGAAGAATCGTTG+TGG 0.605192 5.4:-10917187 None:intergenic
AAATTTGAAAATCAACAAGA+AGG 0.611014 5.4:-10917771 None:intergenic
ACAAACTCATCAACAACAGA+CGG 0.618822 5.4:+10917716 MS.gene010395:CDS
AATCACCATTTGTGCACCCG+CGG 0.620661 5.4:-10917274 None:intergenic
GGAATACCTTGAAGCGCCTG+AGG 0.633316 5.4:-10917165 None:intergenic
CACATGCAACAAGCACAACA+AGG 0.635119 5.4:+10917591 MS.gene010395:CDS
AGAAACTTACACGCCGCACA+CGG 0.639705 5.4:-10916847 None:intergenic
CAAGCACAACAAGGACAAGG+AGG 0.641075 5.4:+10917600 MS.gene010395:CDS
AATCTTTGAGGATTGTCCGG+TGG 0.653598 5.4:-10916913 None:intergenic
TCAACAACAGACGGAAAGCG+AGG 0.658343 5.4:+10917725 MS.gene010395:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AATTCTCTTTACCCTTATAA+TGG + chr5.4:10917234-10917253 MS.gene010395:CDS 25.0%
! TGAACTTAATAATGCTAAGA+AGG + chr5.4:10917122-10917141 MS.gene010395:CDS 25.0%
GGTAAAGAGAATTACCAAAA+GGG - chr5.4:10917227-10917246 None:intergenic 30.0%
TGTACATATGCAAATCTTTG+AGG - chr5.4:10916928-10916947 None:intergenic 30.0%
! GCATATGTACACAAAGTTTT+TGG + chr5.4:10916937-10916956 MS.gene010395:CDS 30.0%
!! AAGGAACTTGCTACTTATAT+TGG + chr5.4:10917141-10917160 MS.gene010395:CDS 30.0%
ACAAACTCATCAACAACAGA+CGG + chr5.4:10917716-10917735 MS.gene010395:CDS 35.0%
CATAAGCTAAGAGCTATTCA+AGG + chr5.4:10917099-10917118 MS.gene010395:CDS 35.0%
GGGTAAAGAGAATTACCAAA+AGG - chr5.4:10917228-10917247 None:intergenic 35.0%
TCAGTTTCTAATTCTTCTGC+TGG + chr5.4:10917468-10917487 MS.gene010395:CDS 35.0%
TCTCTTTACCCTTATAATGG+TGG + chr5.4:10917237-10917256 MS.gene010395:CDS 35.0%
TGATCAATTGTCTCCTTCTT+TGG + chr5.4:10917539-10917558 MS.gene010395:CDS 35.0%
!!! AGTTTTTGAGGTTTAGTGGT+GGG + chr5.4:10917433-10917452 MS.gene010395:CDS 35.0%
!!! CAAGAGTTTTTGAGGTTTAG+TGG + chr5.4:10917429-10917448 MS.gene010395:CDS 35.0%
AAAGATCCCAAAGCCAAAGA+AGG - chr5.4:10917555-10917574 None:intergenic 40.0%
AGACCAACACAACCATAAAC+CGG - chr5.4:10917063-10917082 None:intergenic 40.0%
ATCATCAAATTCACCGTGTG+CGG + chr5.4:10916834-10916853 MS.gene010395:CDS 40.0%
GATCTTGGAAGCTCAACAAT+TGG + chr5.4:10917335-10917354 MS.gene010395:CDS 40.0%
GTTTCTAATTCTTCTGCTGG+TGG + chr5.4:10917471-10917490 MS.gene010395:CDS 40.0%
TCATCATCATCTTCCACTTC+AGG + chr5.4:10917653-10917672 MS.gene010395:CDS 40.0%
TGTTGCTGAAGAATCGTTGT+GGG - chr5.4:10917189-10917208 None:intergenic 40.0%
! AGCAACAGCAAGAGTTTTTG+AGG + chr5.4:10917421-10917440 MS.gene010395:CDS 40.0%
! ATTGTCTCCTTCTTTGGCTT+TGG + chr5.4:10917545-10917564 MS.gene010395:CDS 40.0%
! CAGCAGCATAATAACCCTTT+TGG + chr5.4:10917210-10917229 MS.gene010395:CDS 40.0%
! GAGAGCAGCAAGAGATTTTT+AGG + chr5.4:10917376-10917395 MS.gene010395:CDS 40.0%
! GCAAATCTTTGAGGATTGTC+CGG - chr5.4:10916919-10916938 None:intergenic 40.0%
! GTCTGTTGTTGATGAGTTTG+TGG - chr5.4:10917717-10917736 None:intergenic 40.0%
! TGCTACTTATATTGGTCCTC+AGG + chr5.4:10917149-10917168 MS.gene010395:CDS 40.0%
! TTTTGCACCGTATTTTCCAC+CGG + chr5.4:10916897-10916916 MS.gene010395:CDS 40.0%
!! TTGTCTCCTTCTTTGGCTTT+GGG + chr5.4:10917546-10917565 MS.gene010395:CDS 40.0%
!!! AGTTTTTGGAGCTAGTAACG+TGG + chr5.4:10916951-10916970 MS.gene010395:CDS 40.0%
!!! GAGTTTTTGAGGTTTAGTGG+TGG + chr5.4:10917432-10917451 MS.gene010395:CDS 40.0%
AACACCAACAGCAGAAACTG+GGG - chr5.4:10917514-10917533 None:intergenic 45.0%
AGTAATAGCTGAGCCTGAAG+TGG - chr5.4:10917669-10917688 None:intergenic 45.0%
CAACAAGCACAACAAGGACA+AGG + chr5.4:10917597-10917616 MS.gene010395:CDS 45.0%
CAACACCAACAGCAGAAACT+GGG - chr5.4:10917515-10917534 None:intergenic 45.0%
CACATGCAACAAGCACAACA+AGG + chr5.4:10917591-10917610 MS.gene010395:CDS 45.0%
CGGGAACACCACCATTATAA+GGG - chr5.4:10917248-10917267 None:intergenic 45.0%
CTAATTCTTCTGCTGGTGGT+GGG + chr5.4:10917475-10917494 MS.gene010395:CDS 45.0%
CTGTTGCTGAAGAATCGTTG+TGG - chr5.4:10917190-10917209 None:intergenic 45.0%
GATCCGGTTTATGGTTGTGT+TGG + chr5.4:10917057-10917076 MS.gene010395:CDS 45.0%
GGATTGTCCGGTGGAAAATA+CGG - chr5.4:10916907-10916926 None:intergenic 45.0%
TCTAATTCTTCTGCTGGTGG+TGG + chr5.4:10917474-10917493 MS.gene010395:CDS 45.0%
! AATCTTTGAGGATTGTCCGG+TGG - chr5.4:10916916-10916935 None:intergenic 45.0%
! ACTCTTGAGTGCATTTTCGC+CGG - chr5.4:10916873-10916892 None:intergenic 45.0%
!! GGTTAAGTCGTTGGCTTATG+AGG + chr5.4:10917017-10917036 MS.gene010395:CDS 45.0%
!! GTTTAGTGGTGGGTTTGATG+TGG + chr5.4:10917443-10917462 MS.gene010395:CDS 45.0%
AATCACCATTTGTGCACCCG+CGG - chr5.4:10917277-10917296 None:intergenic 50.0%
AGAAACTTACACGCCGCACA+CGG - chr5.4:10916850-10916869 None:intergenic 50.0%
CAAGCACAACAAGGACAAGG+AGG + chr5.4:10917600-10917619 MS.gene010395:CDS 50.0%
GCAACACCAACAGCAGAAAC+TGG - chr5.4:10917516-10917535 None:intergenic 50.0%
GCGGGAACACCACCATTATA+AGG - chr5.4:10917249-10917268 None:intergenic 50.0%
TCAACAACAGACGGAAAGCG+AGG + chr5.4:10917725-10917744 MS.gene010395:CDS 50.0%
TGCGGCTCAACATCAGATCT+TGG + chr5.4:10917320-10917339 MS.gene010395:CDS 50.0%
TGTGCTTGCTTCTGTTGTGG+TGG - chr5.4:10917693-10917712 None:intergenic 50.0%
! TGATGACGCGGTTAAGTCGT+TGG + chr5.4:10917008-10917027 MS.gene010395:CDS 50.0%
!! GAGTGTAGGAGTGTTGGACT+TGG + chr5.4:10917747-10917766 MS.gene010395:CDS 50.0%
AGTAACCGCGGGTGCACAAA+TGG + chr5.4:10917269-10917288 MS.gene010395:CDS 55.0%
ATCTGATGTTGAGCCGCAGC+AGG - chr5.4:10917318-10917337 None:intergenic 55.0%
ATTGGTCCTCAGGCGCTTCA+AGG + chr5.4:10917159-10917178 MS.gene010395:CDS 55.0%
CAGCAGAAACTGGGGACACT+TGG - chr5.4:10917506-10917525 None:intergenic 55.0%
GGCTGTGCTTGCTTCTGTTG+TGG - chr5.4:10917696-10917715 None:intergenic 55.0%
GTGCGGCGTGTAAGTTTCTC+CGG + chr5.4:10916851-10916870 MS.gene010395:CDS 55.0%
GTGTCCCCAGTTTCTGCTGT+TGG + chr5.4:10917507-10917526 MS.gene010395:CDS 55.0%
! AGACGGAAAGCGAGGAGTGT+AGG + chr5.4:10917733-10917752 MS.gene010395:CDS 55.0%
! AGCGAGGAGTGTAGGAGTGT+TGG + chr5.4:10917741-10917760 MS.gene010395:CDS 55.0%
! GGAATACCTTGAAGCGCCTG+AGG - chr5.4:10917168-10917187 None:intergenic 55.0%
CGGCTGAGGGATCCGGTTTA+TGG + chr5.4:10917048-10917067 MS.gene010395:CDS 60.0%
TGGTGTTCCCGCAGTAACCG+CGG + chr5.4:10917257-10917276 MS.gene010395:CDS 60.0%
TTGTGCACCCGCGGTTACTG+CGG - chr5.4:10917268-10917287 None:intergenic 60.0%
!! GTCGTTGGCTTATGAGGCCG+AGG + chr5.4:10917023-10917042 MS.gene010395:CDS 60.0%
GGTGTTCCCGCAGTAACCGC+GGG + chr5.4:10917258-10917277 MS.gene010395:CDS 65.0%
TGGCTTATGAGGCCGAGGCG+CGG + chr5.4:10917028-10917047 MS.gene010395:CDS 65.0%
TGTGCACCCGCGGTTACTGC+GGG - chr5.4:10917267-10917286 None:intergenic 65.0%
! CGCGACGCAGCGTGATGACG+CGG + chr5.4:10916996-10917015 MS.gene010395:CDS 70.0%
ATGAGGCCGAGGCGCGGCTG+AGG + chr5.4:10917034-10917053 MS.gene010395:CDS 75.0%
CCCGCAGCAGACGCCTGCTG+CGG + chr5.4:10917302-10917321 MS.gene010395:CDS 75.0%
CCGCAGCAGGCGTCTGCTGC+GGG - chr5.4:10917305-10917324 None:intergenic 75.0%
CGAGGCGCGGCTGAGGGATC+CGG + chr5.4:10917041-10917060 MS.gene010395:CDS 75.0%
CGGATCCCTCAGCCGCGCCT+CGG - chr5.4:10917043-10917062 None:intergenic 75.0%
GCCGCAGCAGGCGTCTGCTG+CGG - chr5.4:10917306-10917325 None:intergenic 75.0%
TGAGGCCGAGGCGCGGCTGA+GGG + chr5.4:10917035-10917054 MS.gene010395:CDS 75.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 10916826 10917782 10916826 ID=MS.gene010395
chr5.4 mRNA 10916826 10917782 10916826 ID=MS.gene010395.t1;Parent=MS.gene010395
chr5.4 exon 10916826 10917782 10916826 ID=MS.gene010395.t1.exon1;Parent=MS.gene010395.t1
chr5.4 CDS 10916826 10917782 10916826 ID=cds.MS.gene010395.t1;Parent=MS.gene010395.t1
Gene Sequence

>MS.gene010395

ATGTCGTCATCATCAAATTCACCGTGTGCGGCGTGTAAGTTTCTCCGGCGAAAATGCACTCAAGAGTGTGTTTTTGCACCGTATTTTCCACCGGACAATCCTCAAAGATTTGCATATGTACACAAAGTTTTTGGAGCTAGTAACGTGGCTAAGCTGTTAAACGAGCTTAACGCGACGCAGCGTGATGACGCGGTTAAGTCGTTGGCTTATGAGGCCGAGGCGCGGCTGAGGGATCCGGTTTATGGTTGTGTTGGTCTTATTTCACTTCTTCAGCATAAGCTAAGAGCTATTCAAGGTGAACTTAATAATGCTAAGAAGGAACTTGCTACTTATATTGGTCCTCAGGCGCTTCAAGGTATTCCCACAACGATTCTTCAGCAACAGCAGCAGCATAATAACCCTTTTGGTAATTCTCTTTACCCTTATAATGGTGGTGTTCCCGCAGTAACCGCGGGTGCACAAATGGTGATTCGTGACCCGCAGCAGACGCCTGCTGCGGCTCAACATCAGATCTTGGAAGCTCAACAATTGGCTGCTGCTGTTGCTGCTAGAGAGCAGCAAGAGATTTTTAGGACTTTTGAGAATCAACAACAGCAGCAACAGCAAGAGTTTTTGAGGTTTAGTGGTGGGTTTGATGTGGATTCAGTTTCTAATTCTTCTGCTGGTGGTGGGTTCAACCAAGTGTCCCCAGTTTCTGCTGTTGGTGTTGCTGCTGATCAATTGTCTCCTTCTTTGGCTTTGGGATCTTTTGATAACACTTATCATCACATGCAACAAGCACAACAAGGACAAGGAGGAGAATCTCATAATCTTCATCATCATCATAATCATCATCATCTTCCACTTCAGGCTCAGCTATTACTTCCACCACAACAGAAGCAAGCACAGCCACAAACTCATCAACAACAGACGGAAAGCGAGGAGTGTAGGAGTGTTGGACTTGGTCCTTCTTGTTGA
Protein sequence

>MS.gene010395.t1

MSSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELNATQRDDAVKSLAYEAEARLRDPVYGCVGLISLLQHKLRAIQGELNNAKKELATYIGPQALQGIPTTILQQQQQHNNPFGNSLYPYNGGVPAVTAGAQMVIRDPQQTPAAAQHQILEAQQLAAAVAAREQQEIFRTFENQQQQQQQEFLRFSGGFDVDSVSNSSAGGGFNQVSPVSAVGVAADQLSPSLALGSFDNTYHHMQQAQQGQGGESHNLHHHHNHHHLPLQAQLLLPPQQKQAQPQTHQQQTESEECRSVGLGPSC