AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene010414

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010414.t1 MTR_5g018380 79.444 180 24 3 1 169 1 178 1.83e-81 239
MS.gene010414.t1 MTR_5g018380 76.531 98 15 2 1 92 1 96 1.49e-32 113
MS.gene010414.t1 MTR_5g018400 60.169 118 38 3 1 113 1 114 2.41e-32 119
MS.gene010414.t1 MTR_5g018470 63.810 105 29 4 1 97 1 104 1.75e-21 90.1
MS.gene010414.t1 MTR_1g009613 61.818 55 18 2 117 168 265 319 6.92e-14 68.6
MS.gene010414.t1 MTR_5g016610 54.545 55 22 2 117 168 202 256 1.55e-12 64.3
MS.gene010414.t1 MTR_4g094908 55.357 56 22 2 116 168 268 323 1.64e-12 64.7
MS.gene010414.t1 MTR_4g127040 53.448 58 24 2 114 168 245 302 3.96e-12 63.2
MS.gene010414.t1 MTR_1g070455 55.357 56 22 2 116 168 295 350 4.58e-12 63.2
MS.gene010414.t1 MTR_0117s0040 49.180 61 28 2 114 171 74 134 4.68e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010414.t1 AT2G23530 41.441 111 52 4 1 103 1 106 3.82e-13 66.6
MS.gene010414.t1 AT4G31550 58.182 55 20 2 117 168 249 303 1.51e-12 64.7
MS.gene010414.t1 AT4G31550 58.182 55 20 2 117 168 248 302 1.54e-12 64.7
MS.gene010414.t1 AT2G23320 55.357 56 22 2 116 168 242 297 2.47e-12 63.9
MS.gene010414.t1 AT2G30590 54.386 57 23 2 116 169 315 371 3.71e-12 63.5
MS.gene010414.t1 AT1G29280 50.847 59 26 2 114 169 74 132 5.67e-12 62.4
MS.gene010414.t1 AT2G24570 58.182 55 20 2 117 168 246 300 6.24e-12 62.8
MS.gene010414.t1 AT4G24240 53.448 58 24 2 114 168 281 338 1.34e-11 62.0

Find 51 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAGGGGATTTGGGGTTCT+TGG 0.229670 5.4:-11107806 None:intergenic
TCGTGAAAGAATGGGAAAAT+TGG 0.231845 5.4:+11107726 MS.gene010414:CDS
GTTGAGAGAAACAGGGGATT+TGG 0.244900 5.4:-11107815 None:intergenic
TTGAGAGAAACAGGGGATTT+GGG 0.251244 5.4:-11107814 None:intergenic
CGAGATGGGTTGAGAGAAAC+AGG 0.313803 5.4:-11107823 None:intergenic
CCGAGAAAATCGTGAAAGAA+TGG 0.405376 5.4:+11107717 MS.gene010414:CDS
CGTGAAAGAATGGGAAAATT+GGG 0.409003 5.4:+11107727 MS.gene010414:CDS
CGATCCTCGTATTTCCTCGC+TGG 0.429693 5.4:-11109920 None:intergenic
GTGAAGGTGGCTTAGGTTTG+AGG 0.436792 5.4:-11107771 None:intergenic
AACTACCCGTGGTGGAAATA+CGG 0.437577 5.4:+11108021 MS.gene010414:CDS
TGTTGAGAATCCTCCTCAAA+TGG 0.445286 5.4:+11107636 MS.gene010414:CDS
TGGTCATCGTAACGTACAAT+GGG 0.449249 5.4:+11109963 MS.gene010414:CDS
GGATTTGGGGTTCTTGGAAA+CGG 0.450649 5.4:-11107800 None:intergenic
GTTGGACGTGAAGGTGGCTT+AGG 0.454037 5.4:-11107778 None:intergenic
GCTTCTTCAGTGTAATGAAT+CGG 0.476213 5.4:-11107949 None:intergenic
CGAGAAAATCGTGAAAGAAT+GGG 0.487151 5.4:+11107718 MS.gene010414:CDS
TTGGGGTTCTTGGAAACGGT+TGG 0.488034 5.4:-11107796 None:intergenic
TGTTTGTGATCTTCCATTTG+AGG 0.497029 5.4:-11107649 None:intergenic
TGAAGGTGGCTTAGGTTTGA+GGG 0.497200 5.4:-11107770 None:intergenic
GCAATTCACCATGCTACACT+TGG 0.505881 5.4:-11109897 None:intergenic
AACCTTGTAGATCGACGAGA+TGG 0.506141 5.4:-11107838 None:intergenic
ATACGGTCGTTATCAGATCA+AGG 0.519956 5.4:+11108038 MS.gene010414:CDS
AGAGAATTTACGTGGAAAAG+AGG 0.527212 5.4:+11107980 MS.gene010414:CDS
GTGGTCATCGTAACGTACAA+TGG 0.534478 5.4:+11109962 MS.gene010414:CDS
ACCCATCTCGTCGATCTACA+AGG 0.540781 5.4:+11107836 MS.gene010414:CDS
GACCACCGTTGGATCATCTC+GGG 0.546450 5.4:-11109945 None:intergenic
CTACTTCGCTTTCGCAGACG+AGG 0.547812 5.4:-11107604 None:intergenic
TTGTGATCTTCCATTTGAGG+AGG 0.549172 5.4:-11107646 None:intergenic
GATCCTCGTATTTCCTCGCT+GGG 0.560555 5.4:-11109919 None:intergenic
TTGGAAACGGTTGGACGTGA+AGG 0.565726 5.4:-11107787 None:intergenic
TGAGAGAAACAGGGGATTTG+GGG 0.572526 5.4:-11107813 None:intergenic
GAGAATTTACGTGGAAAAGA+GGG 0.576655 5.4:+11107981 MS.gene010414:CDS
AACGACCGTATTTCCACCAC+GGG 0.578155 5.4:-11108026 None:intergenic
TGACCACCGTTGGATCATCT+CGG 0.580096 5.4:-11109946 None:intergenic
GAAACGGTTGGACGTGAAGG+TGG 0.592441 5.4:-11107784 None:intergenic
TACGTTACGATGACCACCGT+TGG 0.600577 5.4:-11109956 None:intergenic
TACGGTCGTTATCAGATCAA+GGG 0.616705 5.4:+11108039 MS.gene010414:CDS
AGATTATTCCAAGTGTAGCA+TGG 0.624298 5.4:+11109889 MS.gene010414:CDS
CTTCATCTAACTACCCGTGG+TGG 0.627910 5.4:+11108013 MS.gene010414:CDS
AAACTTCATCTAACTACCCG+TGG 0.659680 5.4:+11108010 MS.gene010414:CDS
ACCTTGTAGATCGACGAGAT+GGG 0.660674 5.4:-11107837 None:intergenic
ATCAGATCAAGGGCTCAACA+AGG 0.679629 5.4:+11108049 MS.gene010414:CDS
TCGTGCCCGAGATGATCCAA+CGG 0.683570 5.4:+11109940 MS.gene010414:CDS
AATTAACAAGAGAATTTACG+TGG 0.685647 5.4:+11107972 MS.gene010414:CDS
TTGCCCAGCGAGGAAATACG+AGG 0.701881 5.4:+11109916 MS.gene010414:CDS
TAACGACCGTATTTCCACCA+CGG 0.705477 5.4:-11108027 None:intergenic
AGATGGGTTGAGAGAAACAG+GGG 0.707457 5.4:-11107821 None:intergenic
TGCCCGAGATGATCCAACGG+TGG 0.715028 5.4:+11109943 MS.gene010414:CDS
GCATGGTGAATTGCCCAGCG+AGG 0.722194 5.4:+11109906 MS.gene010414:CDS
GAGATGGGTTGAGAGAAACA+GGG 0.738727 5.4:-11107822 None:intergenic
GGTCATCGTAACGTACAATG+GGG 0.758559 5.4:+11109964 MS.gene010414:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATTAAAATAAGTTGT+TGG - chr5.4:11108621-11108640 None:intergenic 10.0%
!!! AAAATTTGATTTTCTTTTTT+TGG + chr5.4:11108819-11108838 MS.gene010414:intron 10.0%
!!! TATTTTACTTAAATTTAGTT+TGG + chr5.4:11108561-11108580 MS.gene010414:intron 10.0%
!! AAAAGTTAAAACATAACTAA+CGG - chr5.4:11109822-11109841 None:intergenic 15.0%
!! AATAAAAAATGAGAAAAACA+AGG + chr5.4:11109038-11109057 MS.gene010414:intron 15.0%
!!! ATATTTTGATTAACAAAATG+TGG - chr5.4:11109418-11109437 None:intergenic 15.0%
!!! TAAAAGTAAAGTGTTTTATA+GGG - chr5.4:11108126-11108145 None:intergenic 15.0%
!!! TTGTTTTTCTCATTTTTTAT+TGG - chr5.4:11109039-11109058 None:intergenic 15.0%
!! AAGACCTTCATTAATTATTA+CGG + chr5.4:11108773-11108792 MS.gene010414:intron 20.0%
!!! AATGAAAGATTGAATTTTGA+GGG - chr5.4:11107879-11107898 None:intergenic 20.0%
!!! ACAAAAAAGAAATCAACTTT+TGG - chr5.4:11109860-11109879 None:intergenic 20.0%
!!! ATTTGAAAGTGTTTCTATAA+AGG + chr5.4:11109764-11109783 MS.gene010414:intron 20.0%
!!! GTAAAAGTAAAGTGTTTTAT+AGG - chr5.4:11108127-11108146 None:intergenic 20.0%
!!! TTTCTTTTTTTGGTTCAATT+AGG + chr5.4:11108829-11108848 MS.gene010414:intron 20.0%
!!! TTTTTATTGGTCAAAAACAA+TGG - chr5.4:11109026-11109045 None:intergenic 20.0%
! AAACCAAAGAAAAAGGATTA+TGG - chr5.4:11107909-11107928 None:intergenic 25.0%
! AATCTGAAAACCAAAGAAAA+AGG - chr5.4:11107916-11107935 None:intergenic 25.0%
! AATTAACAAGAGAATTTACG+TGG + chr5.4:11107972-11107991 MS.gene010414:CDS 25.0%
! ATCACCGTAATAATTAATGA+AGG - chr5.4:11108780-11108799 None:intergenic 25.0%
! GCTTATAATATTGACACTAA+CGG - chr5.4:11109251-11109270 None:intergenic 25.0%
! TAAGCAAGTAGTCAAATAAA+AGG + chr5.4:11109648-11109667 MS.gene010414:intron 25.0%
! TATCATTACTCATTGCAAAA+AGG + chr5.4:11109096-11109115 MS.gene010414:intron 25.0%
! TCGAAATACTTGTAATTTCA+TGG + chr5.4:11109706-11109725 MS.gene010414:intron 25.0%
! TTAACAAAATGTGGAACAAA+CGG - chr5.4:11109409-11109428 None:intergenic 25.0%
!! AGTAGATTTGATGTATTGAT+TGG + chr5.4:11108392-11108411 MS.gene010414:intron 25.0%
!! CAATGAAAGATTGAATTTTG+AGG - chr5.4:11107880-11107899 None:intergenic 25.0%
!! GGAAATGTTATTTAACCTAA+GGG - chr5.4:11108484-11108503 None:intergenic 25.0%
!! TGGAAATGTTATTTAACCTA+AGG - chr5.4:11108485-11108504 None:intergenic 25.0%
!!! AACCATTTTTTGACAACTTT+TGG + chr5.4:11108943-11108962 MS.gene010414:intron 25.0%
!!! TTTTTTGGTTCAATTAGGAA+GGG + chr5.4:11108834-11108853 MS.gene010414:intron 25.0%
!!! TTTTTTTGGTTCAATTAGGA+AGG + chr5.4:11108833-11108852 MS.gene010414:intron 25.0%
AAAACAATGGAGAGAGAAAA+AGG - chr5.4:11109013-11109032 None:intergenic 30.0%
AAGAAAGAGAAGAGAAATAG+AGG + chr5.4:11108420-11108439 MS.gene010414:intron 30.0%
CAATTACTCCTTAACTTTCT+GGG + chr5.4:11108092-11108111 MS.gene010414:intron 30.0%
CTATAAAGGAGAGATTAATC+TGG + chr5.4:11109778-11109797 MS.gene010414:intron 30.0%
GAAAGTGAGTGAATAAACTT+TGG + chr5.4:11109577-11109596 MS.gene010414:intron 30.0%
GTCCAAAAGTTGTCAAAAAA+TGG - chr5.4:11108948-11108967 None:intergenic 30.0%
TATATTACCCAGTCATGAAT+CGG + chr5.4:11109552-11109571 MS.gene010414:intron 30.0%
TCAACAAAGTTGTCATCAAA+TGG + chr5.4:11109064-11109083 MS.gene010414:intron 30.0%
TTACTTAGTGTGTGTTTGTT+TGG + chr5.4:11108143-11108162 MS.gene010414:intron 30.0%
! CTACCATAATCCTTTTTCTT+TGG + chr5.4:11107903-11107922 MS.gene010414:intron 30.0%
!! AATGCAATGGAAATTGGTTT+TGG + chr5.4:11108254-11108273 MS.gene010414:intron 30.0%
!! TTGAATTTTGAGGGTGAAAA+TGG - chr5.4:11107870-11107889 None:intergenic 30.0%
!!! ATGCAATGGAAATTGGTTTT+GGG + chr5.4:11108255-11108274 MS.gene010414:intron 30.0%
AAATCACGGTGAAAATGCAA+TGG + chr5.4:11108241-11108260 MS.gene010414:intron 35.0%
AGAGAATTTACGTGGAAAAG+AGG + chr5.4:11107980-11107999 MS.gene010414:CDS 35.0%
AGATTATTCCAAGTGTAGCA+TGG + chr5.4:11109889-11109908 MS.gene010414:CDS 35.0%
AGGATGTTTGGAAACAAGTT+TGG - chr5.4:11108284-11108303 None:intergenic 35.0%
ATTACAAGAGAGAGAAGTTG+AGG - chr5.4:11109195-11109214 None:intergenic 35.0%
CCAATTACTCCTTAACTTTC+TGG + chr5.4:11108091-11108110 MS.gene010414:intron 35.0%
CCAGAAAGTTAAGGAGTAAT+TGG - chr5.4:11108094-11108113 None:intergenic 35.0%
CGAGAAAATCGTGAAAGAAT+GGG + chr5.4:11107718-11107737 MS.gene010414:CDS 35.0%
CGTGAAAGAATGGGAAAATT+GGG + chr5.4:11107727-11107746 MS.gene010414:CDS 35.0%
GACTGGGTAATATAGTCATT+TGG - chr5.4:11109546-11109565 None:intergenic 35.0%
GAGAATTTACGTGGAAAAGA+GGG + chr5.4:11107981-11108000 MS.gene010414:CDS 35.0%
GCTTCTTCAGTGTAATGAAT+CGG - chr5.4:11107952-11107971 None:intergenic 35.0%
GGTGAAAATGCAATGGAAAT+TGG + chr5.4:11108248-11108267 MS.gene010414:intron 35.0%
TAGTGTGTGTTTGTTTGGTA+TGG + chr5.4:11108148-11108167 MS.gene010414:intron 35.0%
TCGACTGTGATTAAGTTTCA+AGG - chr5.4:11108174-11108193 None:intergenic 35.0%
TCGTGAAAGAATGGGAAAAT+TGG + chr5.4:11107726-11107745 MS.gene010414:CDS 35.0%
TGTTTGTGATCTTCCATTTG+AGG - chr5.4:11107652-11107671 None:intergenic 35.0%
TGTTTGTTTGGAGAGAAAGT+GGG - chr5.4:11109226-11109245 None:intergenic 35.0%
TTGTTTCCAAACATCCTCTT+AGG + chr5.4:11108287-11108306 MS.gene010414:intron 35.0%
TTGTTTGTTTGGAGAGAAAG+TGG - chr5.4:11109227-11109246 None:intergenic 35.0%
! AAAAGTACGATAATGCCCTT+AGG + chr5.4:11108466-11108485 MS.gene010414:intron 35.0%
! ATTGCATTTTCACCGTGATT+TGG - chr5.4:11108242-11108261 None:intergenic 35.0%
! CCATTCTTTCACGATTTTCT+CGG - chr5.4:11107720-11107739 None:intergenic 35.0%
! GAAGTACATTTTCTCCAGTT+TGG - chr5.4:11109169-11109188 None:intergenic 35.0%
AAACTTCATCTAACTACCCG+TGG + chr5.4:11108010-11108029 MS.gene010414:CDS 40.0%
ACACAACCTAAGAGGATGTT+TGG - chr5.4:11108296-11108315 None:intergenic 40.0%
ACTTGCATCCCAGAAAGTTA+AGG - chr5.4:11108103-11108122 None:intergenic 40.0%
AGAGAGAAAAAGGAAGAGAG+AGG - chr5.4:11109003-11109022 None:intergenic 40.0%
ATACGGTCGTTATCAGATCA+AGG + chr5.4:11108038-11108057 MS.gene010414:CDS 40.0%
CAATCTTCCCATTTATGCGA+AGG - chr5.4:11108900-11108919 None:intergenic 40.0%
CACAGTCGAAAATCACGTTT+GGG + chr5.4:11108185-11108204 MS.gene010414:intron 40.0%
CCGAGAAAATCGTGAAAGAA+TGG + chr5.4:11107717-11107736 MS.gene010414:CDS 40.0%
GAAACCAAACACAACCTAAG+AGG - chr5.4:11108304-11108323 None:intergenic 40.0%
TACAGATGACCAAAGTAGCA+TGG + chr5.4:11109343-11109362 MS.gene010414:intron 40.0%
TACGGTCGTTATCAGATCAA+GGG + chr5.4:11108039-11108058 MS.gene010414:CDS 40.0%
TCACAGTCGAAAATCACGTT+TGG + chr5.4:11108184-11108203 MS.gene010414:intron 40.0%
TGGTCATCGTAACGTACAAT+GGG + chr5.4:11109963-11109982 MS.gene010414:CDS 40.0%
TGTTGAGAATCCTCCTCAAA+TGG + chr5.4:11107636-11107655 MS.gene010414:CDS 40.0%
TTGAGAGAAACAGGGGATTT+GGG - chr5.4:11107817-11107836 None:intergenic 40.0%
TTGTGATCTTCCATTTGAGG+AGG - chr5.4:11107649-11107668 None:intergenic 40.0%
! ACACTAACGGCTTGTTTGTT+TGG - chr5.4:11109238-11109257 None:intergenic 40.0%
! ACATCCTCTTAGGTTGTGTT+TGG + chr5.4:11108297-11108316 MS.gene010414:intron 40.0%
! ACTTTCAACCGATTCATGAC+TGG - chr5.4:11109563-11109582 None:intergenic 40.0%
! CTTCAGCTTTAGCCAAATCA+CGG + chr5.4:11108227-11108246 MS.gene010414:intron 40.0%
! CTTTCAACCGATTCATGACT+GGG - chr5.4:11109562-11109581 None:intergenic 40.0%
!! CGACTTTTACCATGCTACTT+TGG - chr5.4:11109355-11109374 None:intergenic 40.0%
AACCTTGTAGATCGACGAGA+TGG - chr5.4:11107841-11107860 None:intergenic 45.0%
ACCTTGTAGATCGACGAGAT+GGG - chr5.4:11107840-11107859 None:intergenic 45.0%
AGTTGGAACGAGAGAAGTTG+AGG - chr5.4:11109135-11109154 None:intergenic 45.0%
ATCAGATCAAGGGCTCAACA+AGG + chr5.4:11108049-11108068 MS.gene010414:CDS 45.0%
CCATTTATGCGAAGGAAGAG+GGG - chr5.4:11108892-11108911 None:intergenic 45.0%
CCCATTTATGCGAAGGAAGA+GGG - chr5.4:11108893-11108912 None:intergenic 45.0%
CCCTCTTCCTTCGCATAAAT+GGG + chr5.4:11108890-11108909 MS.gene010414:intron 45.0%
GATTTGGCTAAAGCTGAAGC+TGG - chr5.4:11108226-11108245 None:intergenic 45.0%
GCAATTCACCATGCTACACT+TGG - chr5.4:11109900-11109919 None:intergenic 45.0%
GGTCATCGTAACGTACAATG+GGG + chr5.4:11109964-11109983 MS.gene010414:CDS 45.0%
GTGGTCATCGTAACGTACAA+TGG + chr5.4:11109962-11109981 MS.gene010414:CDS 45.0%
GTTGAGAGAAACAGGGGATT+TGG - chr5.4:11107818-11107837 None:intergenic 45.0%
TAACGACCGTATTTCCACCA+CGG - chr5.4:11108030-11108049 None:intergenic 45.0%
TCCCATTTATGCGAAGGAAG+AGG - chr5.4:11108894-11108913 None:intergenic 45.0%
TGAAGGTGGCTTAGGTTTGA+GGG - chr5.4:11107773-11107792 None:intergenic 45.0%
TGAGAGAAACAGGGGATTTG+GGG - chr5.4:11107816-11107835 None:intergenic 45.0%
! AACTACCCGTGGTGGAAATA+CGG + chr5.4:11108021-11108040 MS.gene010414:CDS 45.0%
! GGATTTGGGGTTCTTGGAAA+CGG - chr5.4:11107803-11107822 None:intergenic 45.0%
! TTTTCTCCAGTTTGGCACAG+AGG - chr5.4:11109161-11109180 None:intergenic 45.0%
!! AGATGGGTTGAGAGAAACAG+GGG - chr5.4:11107824-11107843 None:intergenic 45.0%
!! GAGATGGGTTGAGAGAAACA+GGG - chr5.4:11107825-11107844 None:intergenic 45.0%
!! AATAATTAAATTAATTTCAA+TGG - chr5.4:11108505-11108524 None:intergenic 5.0%
AACGACCGTATTTCCACCAC+GGG - chr5.4:11108029-11108048 None:intergenic 50.0%
ACCCATCTCGTCGATCTACA+AGG + chr5.4:11107836-11107855 MS.gene010414:CDS 50.0%
ACTTCTCCTCTGTGCCAAAC+TGG + chr5.4:11109152-11109171 MS.gene010414:intron 50.0%
CCCCTCTTCCTTCGCATAAA+TGG + chr5.4:11108889-11108908 MS.gene010414:intron 50.0%
CTTCATCTAACTACCCGTGG+TGG + chr5.4:11108013-11108032 MS.gene010414:CDS 50.0%
GATCCTCGTATTTCCTCGCT+GGG - chr5.4:11109922-11109941 None:intergenic 50.0%
GTGAAGGTGGCTTAGGTTTG+AGG - chr5.4:11107774-11107793 None:intergenic 50.0%
GTTTGGCACAGAGGAGAAGT+TGG - chr5.4:11109152-11109171 None:intergenic 50.0%
TACGTTACGATGACCACCGT+TGG - chr5.4:11109959-11109978 None:intergenic 50.0%
TGACCACCGTTGGATCATCT+CGG - chr5.4:11109949-11109968 None:intergenic 50.0%
TTGGAAACGGTTGGACGTGA+AGG - chr5.4:11107790-11107809 None:intergenic 50.0%
TTGGGGTTCTTGGAAACGGT+TGG - chr5.4:11107799-11107818 None:intergenic 50.0%
! AACAGGGGATTTGGGGTTCT+TGG - chr5.4:11107809-11107828 None:intergenic 50.0%
!! CGAGATGGGTTGAGAGAAAC+AGG - chr5.4:11107826-11107845 None:intergenic 50.0%
CGATCCTCGTATTTCCTCGC+TGG - chr5.4:11109923-11109942 None:intergenic 55.0%
CTACTTCGCTTTCGCAGACG+AGG - chr5.4:11107607-11107626 None:intergenic 55.0%
GAAACGGTTGGACGTGAAGG+TGG - chr5.4:11107787-11107806 None:intergenic 55.0%
GACCACCGTTGGATCATCTC+GGG - chr5.4:11109948-11109967 None:intergenic 55.0%
GTTGGACGTGAAGGTGGCTT+AGG - chr5.4:11107781-11107800 None:intergenic 55.0%
TCGTGCCCGAGATGATCCAA+CGG + chr5.4:11109940-11109959 MS.gene010414:CDS 55.0%
TTGCCCAGCGAGGAAATACG+AGG + chr5.4:11109916-11109935 MS.gene010414:CDS 55.0%
GCATGGTGAATTGCCCAGCG+AGG + chr5.4:11109906-11109925 MS.gene010414:CDS 60.0%
TGCCCGAGATGATCCAACGG+TGG + chr5.4:11109943-11109962 MS.gene010414:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 11107601 11110009 11107601 ID=MS.gene010414
chr5.4 mRNA 11107601 11110009 11107601 ID=MS.gene010414.t1;Parent=MS.gene010414
chr5.4 exon 11107601 11107857 11107601 ID=MS.gene010414.t1.exon1;Parent=MS.gene010414.t1
chr5.4 CDS 11107601 11107857 11107601 ID=cds.MS.gene010414.t1;Parent=MS.gene010414.t1
chr5.4 exon 11107933 11108070 11107933 ID=MS.gene010414.t1.exon2;Parent=MS.gene010414.t1
chr5.4 CDS 11107933 11108070 11107933 ID=cds.MS.gene010414.t1;Parent=MS.gene010414.t1
chr5.4 exon 11109889 11110009 11109889 ID=MS.gene010414.t1.exon3;Parent=MS.gene010414.t1
chr5.4 CDS 11109889 11110009 11109889 ID=cds.MS.gene010414.t1;Parent=MS.gene010414.t1
Gene Sequence

>MS.gene010414

ATGCCTCGTCTGCGAAAGCGAAGTAGAAGAGAAATTGTTGAGAATCCTCCTCAAATGGAAGATCACAAACACAACAAGAAGAAGTCTCAATACGAGCTCACAAGAGAAGAAAGAATCCGAGAAAATCGTGAAAGAATGGGAAAATTGGGTCTTTTCAACATTTCACTCTCCCTCAAACCTAAGCCACCTTCACGTCCAACCGTTTCCAAGAACCCCAAATCCCCTGTTTCTCTCAACCCATCTCGTCGATCTACAAGGTTCTTCTTCCATTTTCACCCTCAAAATTCAATCTTTCATTGTATCTACCATAATCCTTTTTCTTTGGTTTTCAGATTGCAGAATGTTGCTCCGATTCATTACACTGAAGAAGCAATTAACAAGAGAATTTACGTGGAAAAGAGGGTGAAGAAAACTTCATCTAACTACCCGTGGTGGAAATACGGTCGTTATCAGATCAAGGGCTCAACAAGGTATCGATGCATCTAACTAACCAATTACTCCTTAACTTTCTGGGATGCAAGTCCCTATAAAACACTTTACTTTTACTTAGTGTGTGTTTGTTTGGTATGGCCTTGAAACTTAATCACAGTCGAAAATCACGTTTGGGTAGAAGCAATGTTTTCCAGCTTCAGCTTTAGCCAAATCACGGTGAAAATGCAATGGAAATTGGTTTTGGGCTTCCAAACTTGTTTCCAAACATCCTCTTAGGTTGTGTTTGGTTTCGAAGAGAAATTGTGAAGAGAGAAATAGATAAGAGAGAGTGAGAGAAGAGAGAAATTGATGAGAAATAGAGTAGATTTGATGTATTGATTGGTAGAAAAGAAAGAGAAGAGAAATAGAGGAGAGAGAAGTGTTATTTGTTTTCAAAAGTACGATAATGCCCTTAGGTTAAATAACATTTCCATTGAAATTAATTTAATTATTTTACTTTTTGAAAGAAATTTAATTTAATTATTTAATTATTTTACTTAAATTTAGTTTGGTTATGATTTATTTAAATTTAGATAGTTAATAAATCCAACAACTTATTTTAATTTAATTAATTAAATTATTTGAAGTGAGATAGCTATTAGTATTTCAATACTTAATCAATAAAAAAATGCTCTCAGTTTTGACTTGAAGAAAAAAGAAACGAAAGATACTAGTGAGATTGTTTCGACATTCAGAATTTGAAGACCTTCATTAATTATTACGGTGATAGTATGAAAAGAATGAAGCAAAATTTGATTTTCTTTTTTTGGTTCAATTAGGAAGGGCGTGAACGTAATTGCAATCAAATAAACAATCTCCCCTCTTCCTTCGCATAAATGGGAAGATTGCAAAAGAGAAATGATATTTTGACAACCATTTTTTGACAACTTTTGGACAACTTTCTCTCATACTCACATGATGTTGTTATCCTCTCTCTTCCTTTTTCTCTCTCCATTGTTTTTGACCAATAAAAAATGAGAAAAACAAGGTTGTCAACAAAGTTGTCATCAAATGGATGTCAAAATATCATTACTCATTGCAAAAAGGTGAAAAGTTGTCACCTCAACTTCTCTCGTTCCAACTTCTCCTCTGTGCCAAACTGGAGAAAATGTACTTCTCTCCTCAACTTCTCTCTCTTGTAATTCTCTCGTCCCACTTTCTCTCCAAACAAACAAGCCGTTAGTGTCAATATTATAAGCAATGACATGTTTTAGATTCATTAAATAAATAATTTATTTTTATTTTATCTATAATATACATCAGTTTTCGCTTACAGATGACCAAAGTAGCATGGTAAAAGTCGTTTTCTTCAATGTATTAAAATTTTAAAATAGCCGTTTGTTCCACATTTTGTTAATCAAAATATTTTAGTATTAGTGACTATTTTGATTTATGAAGTACATAATCAATGACTATTTTGAAATTATGTTACATTAAAAGACTATTGTTATTATTCGTTACACTTTGAGAACCAAATGACTATATTACCCAGTCATGAATCGGTTGAAAGTGAGTGAATAAACTTTGGAATCAAATTGATATAAAATTGTTAAAATAAAATATAGATATTTAACTATAAGCAAGTAGTCAAATAAAAGGATTAACTTGAGAATTTTAATAGAACAGAGTATTTTTCGAAATACTTGTAATTTCATGGATTTATTTGAAATTGTTCTATAAAGTCATCGATTTATTTGAAAGTGTTTCTATAAAGGAGAGATTAATCTGGTCGTTTATTCAATCTTGACCGTTAGTTATGTTTTAACTTTTGTTTAGAACTTGTTTCCAAAAGTTGATTTCTTTTTTGTTTTACTCAGAGATTATTCCAAGTGTAGCATGGTGAATTGCCCAGCGAGGAAATACGAGGATCGTGCCCGAGATGATCCAACGGTGGTCATCGTAACGTACAATGGGGAGCACACACACCCAAGTTTTTGA
Protein sequence

>MS.gene010414.t1

MPRLRKRSRREIVENPPQMEDHKHNKKKSQYELTREERIRENRERMGKLGLFNISLSLKPKPPSRPTVSKNPKSPVSLNPSRRSTRLQNVAPIHYTEEAINKRIYVEKRVKKTSSNYPWWKYGRYQIKGSTRDYSKCSMVNCPARKYEDRARDDPTVVIVTYNGEHTHPSF