Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010437.t1 | XP_003611877.2 | 95.8 | 527 | 20 | 1 | 1 | 527 | 1 | 525 | 3.10E-267 | 930.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010437.t1 | Q8W4F0 | 67.3 | 559 | 144 | 4 | 1 | 526 | 1 | 553 | 3.5e-190 | 666.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010437.t1 | G7KAS2 | 95.8 | 527 | 20 | 1 | 1 | 527 | 1 | 525 | 2.3e-267 | 930.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene010437.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010437.t1 | MTR_5g018900 | 97.154 | 527 | 13 | 1 | 1 | 527 | 1 | 525 | 0.0 | 1064 |
| MS.gene010437.t1 | MTR_8g078410 | 75.188 | 532 | 125 | 5 | 1 | 526 | 1 | 531 | 0.0 | 772 |
| MS.gene010437.t1 | MTR_1g021835 | 58.935 | 526 | 158 | 6 | 1 | 526 | 1 | 468 | 0.0 | 607 |
| MS.gene010437.t1 | MTR_5g081160 | 50.947 | 528 | 201 | 6 | 1 | 526 | 32 | 503 | 2.34e-178 | 511 |
| MS.gene010437.t1 | MTR_1g021835 | 57.692 | 416 | 125 | 5 | 1 | 416 | 1 | 365 | 1.67e-169 | 486 |
| MS.gene010437.t1 | MTR_3g069410 | 56.954 | 453 | 164 | 6 | 101 | 526 | 64 | 512 | 4.25e-169 | 488 |
| MS.gene010437.t1 | MTR_1g021835 | 55.775 | 355 | 110 | 3 | 1 | 355 | 1 | 308 | 2.43e-138 | 402 |
| MS.gene010437.t1 | MTR_5g018910 | 76.404 | 89 | 20 | 1 | 156 | 244 | 496 | 583 | 1.29e-41 | 158 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010437.t1 | AT4G36860 | 66.905 | 559 | 146 | 6 | 1 | 526 | 1 | 553 | 0.0 | 714 |
| MS.gene010437.t1 | AT4G36860 | 64.605 | 582 | 145 | 7 | 1 | 526 | 1 | 577 | 0.0 | 708 |
| MS.gene010437.t1 | AT1G19270 | 52.055 | 584 | 169 | 8 | 1 | 526 | 1 | 531 | 0.0 | 583 |
| MS.gene010437.t1 | AT1G19270 | 52.055 | 584 | 169 | 8 | 1 | 526 | 1 | 531 | 0.0 | 583 |
| MS.gene010437.t1 | AT4G36860 | 64.811 | 449 | 124 | 5 | 1 | 416 | 1 | 448 | 0.0 | 569 |
| MS.gene010437.t1 | AT2G39830 | 57.718 | 447 | 164 | 5 | 102 | 526 | 75 | 518 | 0.0 | 518 |
| MS.gene010437.t1 | AT2G39830 | 56.484 | 455 | 172 | 6 | 94 | 526 | 77 | 527 | 2.95e-180 | 517 |
| MS.gene010437.t1 | AT2G39830 | 56.114 | 458 | 172 | 7 | 94 | 526 | 77 | 530 | 7.57e-178 | 511 |
| MS.gene010437.t1 | AT2G39830 | 53.591 | 362 | 143 | 6 | 94 | 432 | 77 | 436 | 2.24e-135 | 400 |
| MS.gene010437.t1 | AT5G66620 | 46.667 | 480 | 229 | 9 | 47 | 519 | 181 | 640 | 1.22e-134 | 405 |
| MS.gene010437.t1 | AT5G66620 | 46.667 | 480 | 229 | 9 | 47 | 519 | 172 | 631 | 1.42e-134 | 404 |
| MS.gene010437.t1 | AT5G66620 | 46.667 | 480 | 229 | 9 | 47 | 519 | 172 | 631 | 1.42e-134 | 404 |
| MS.gene010437.t1 | AT5G66610 | 45.200 | 500 | 230 | 10 | 40 | 520 | 77 | 551 | 6.18e-129 | 387 |
| MS.gene010437.t1 | AT5G66610 | 45.952 | 457 | 205 | 8 | 66 | 520 | 8 | 424 | 6.79e-126 | 375 |
| MS.gene010437.t1 | AT5G66610 | 42.315 | 527 | 233 | 11 | 40 | 520 | 77 | 578 | 4.09e-123 | 373 |
| MS.gene010437.t1 | AT5G66630 | 48.533 | 375 | 176 | 7 | 148 | 519 | 338 | 698 | 1.97e-111 | 347 |
| MS.gene010437.t1 | AT5G66640 | 43.656 | 465 | 228 | 14 | 71 | 519 | 24 | 470 | 3.24e-107 | 329 |
| MS.gene010437.t1 | AT5G66640 | 43.929 | 453 | 221 | 13 | 81 | 519 | 5 | 438 | 1.18e-106 | 326 |
| MS.gene010437.t1 | AT5G66640 | 43.929 | 453 | 221 | 13 | 81 | 519 | 5 | 438 | 1.18e-106 | 326 |
| MS.gene010437.t1 | AT5G66640 | 43.441 | 465 | 228 | 14 | 71 | 519 | 24 | 469 | 2.18e-106 | 327 |
| MS.gene010437.t1 | AT5G17890 | 50.806 | 372 | 173 | 5 | 153 | 519 | 1235 | 1601 | 2.38e-104 | 343 |
| MS.gene010437.t1 | AT5G66640 | 50.155 | 323 | 152 | 6 | 205 | 519 | 10 | 331 | 2.30e-100 | 306 |
| MS.gene010437.t1 | AT5G66640 | 40.215 | 465 | 240 | 15 | 71 | 519 | 24 | 466 | 6.74e-91 | 286 |
| MS.gene010437.t1 | AT5G66640 | 40.000 | 465 | 240 | 15 | 71 | 519 | 24 | 465 | 3.82e-90 | 285 |
| MS.gene010437.t1 | AT5G66620 | 41.399 | 343 | 174 | 9 | 47 | 382 | 172 | 494 | 2.73e-77 | 252 |
Find 129 sgRNAs with CRISPR-Local
Find 296 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGATTCCTTCTTCAATTTC+TGG | 0.060868 | 5.4:-11439595 | None:intergenic |
| AGTATAGAGCTCATCCTTTC+TGG | 0.166643 | 5.4:+11438529 | MS.gene010437:CDS |
| AACATGGTGATGATAGAATT+TGG | 0.189733 | 5.4:+11435725 | MS.gene010437:CDS |
| GGCTCTAATCATAGAATTTC+AGG | 0.190682 | 5.4:+11435685 | MS.gene010437:CDS |
| TCTCCCTGTAGCAGGATTTA+TGG | 0.233835 | 5.4:-11437529 | None:intergenic |
| CATGCATGGCTCAGGCTTAA+AGG | 0.237169 | 5.4:+11439462 | MS.gene010437:CDS |
| GTCTTCCTCAAGTTGATCTT+TGG | 0.266836 | 5.4:-11436415 | None:intergenic |
| GCAGCAAGTTCCTATGCTTT+TGG | 0.277916 | 5.4:+11438878 | MS.gene010437:CDS |
| CATCGACGGGTCAGTCTATA+AGG | 0.282747 | 5.4:-11439280 | None:intergenic |
| GTGTCTAGACTCAGCAATTA+TGG | 0.285275 | 5.4:+11438785 | MS.gene010437:CDS |
| CATAAAATTCTAGTATTTCA+TGG | 0.285949 | 5.4:-11438833 | None:intergenic |
| GTCCTCTAGTTTCAGGTAAA+TGG | 0.286014 | 5.4:-11439064 | None:intergenic |
| CGGTGTCCTGCCCCTATACT+TGG | 0.286586 | 5.4:-11439235 | None:intergenic |
| TACCAGGCGGTACTTAAGTA+TGG | 0.294982 | 5.4:+11439841 | MS.gene010437:CDS |
| ACCTCTTTCCACCAGGATTC+AGG | 0.345128 | 5.4:+11436526 | MS.gene010437:CDS |
| TTAGAATCAGAGCTCTATTC+TGG | 0.345608 | 5.4:+11439640 | MS.gene010437:CDS |
| TGCTGTCGAGCTCATGCGTT+GGG | 0.363900 | 5.4:-11438566 | None:intergenic |
| TCAGAGCTCTATTCTGGATC+TGG | 0.372505 | 5.4:+11439646 | MS.gene010437:CDS |
| AAGCAGAGTCCTCTAGTTTC+AGG | 0.382892 | 5.4:-11439071 | None:intergenic |
| TAAGTTGCATGGGAGGGGTC+TGG | 0.385209 | 5.4:+11437255 | MS.gene010437:CDS |
| TCAATTTCTGGCCTCAAGTT+GGG | 0.412121 | 5.4:-11439583 | None:intergenic |
| TTCTTGCAAACATCACATCT+TGG | 0.412310 | 5.4:-11437560 | None:intergenic |
| CTTTCAACATGGAAAAGTTC+CGG | 0.413229 | 5.4:-11439896 | None:intergenic |
| TTCAATTTCTGGCCTCAAGT+TGG | 0.417922 | 5.4:-11439584 | None:intergenic |
| ATGGAAAAGTTCCGGTCAAA+TGG | 0.421969 | 5.4:-11439888 | None:intergenic |
| ACATGGTGATGATAGAATTT+GGG | 0.426199 | 5.4:+11435726 | MS.gene010437:CDS |
| CTGAGTGCAGGATGATTTGC+CGG | 0.446222 | 5.4:+11435881 | MS.gene010437:intron |
| TCTTGCAAACATCACATCTT+GGG | 0.448902 | 5.4:-11437559 | None:intergenic |
| GTGATGCTTCTCCCTGTAGC+AGG | 0.451634 | 5.4:-11437537 | None:intergenic |
| TGAAGGTTTAAATATGAAAG+TGG | 0.460205 | 5.4:+11438854 | MS.gene010437:CDS |
| CTAACCTCATAATCAGTGAT+TGG | 0.460726 | 5.4:-11437314 | None:intergenic |
| CGGTCAAATGGATATGATCA+AGG | 0.464591 | 5.4:-11439876 | None:intergenic |
| GGCTGTCACTTCGCATCGAC+GGG | 0.470821 | 5.4:-11439293 | None:intergenic |
| TCTGCCAATCACTGATTATG+AGG | 0.478761 | 5.4:+11437310 | MS.gene010437:CDS |
| TATGTTTATAGATTGTTGAC+AGG | 0.479289 | 5.4:+11439414 | MS.gene010437:intron |
| TTTCTCTGCAGAATCTGTGC+TGG | 0.480650 | 5.4:+11437200 | MS.gene010437:intron |
| TGGTTTACAAAGTTTCTCAA+TGG | 0.483060 | 5.4:+11435664 | MS.gene010437:CDS |
| GCAGATGGCAAGCATGGCAT+TGG | 0.483972 | 5.4:-11437292 | None:intergenic |
| GTGAGGTATCTGACTCAATC+TGG | 0.485020 | 5.4:-11439789 | None:intergenic |
| GCTGGATGCAATGCTGAGAT+TGG | 0.485337 | 5.4:+11437218 | MS.gene010437:CDS |
| TTGTTGTAGCTGCGAAAGAA+TGG | 0.486878 | 5.4:+11438596 | MS.gene010437:CDS |
| GTATTTCATGGTAGAGAGGT+TGG | 0.496331 | 5.4:-11438821 | None:intergenic |
| TCAGATACCTCACCAGCCTA+TGG | 0.497390 | 5.4:+11439799 | MS.gene010437:CDS |
| ATGAGGCCAGCTGAATTAGC+CGG | 0.498369 | 5.4:-11438504 | None:intergenic |
| AGATAATGCATGCATGGCTC+AGG | 0.501774 | 5.4:+11439454 | MS.gene010437:CDS |
| GTGTTCTGCATCATCGAAGA+AGG | 0.503016 | 5.4:+11439720 | MS.gene010437:CDS |
| CAGAGCTCTATTCTGGATCT+GGG | 0.507459 | 5.4:+11439647 | MS.gene010437:CDS |
| TCTCCCCACCTCTTTCCACC+AGG | 0.509167 | 5.4:+11436519 | MS.gene010437:CDS |
| CTTGATCATATCCATTTGAC+CGG | 0.509477 | 5.4:+11439877 | MS.gene010437:CDS |
| CTGAAAGGGAAGAAAGTTGT+TGG | 0.513320 | 5.4:+11435960 | MS.gene010437:CDS |
| ATATATAATTACCTGAATCC+TGG | 0.513713 | 5.4:-11436537 | None:intergenic |
| TGGATTCAGATCGGGTTACC+AGG | 0.515296 | 5.4:+11439825 | MS.gene010437:CDS |
| ATTCAATTAAGTTTGAGCAC+TGG | 0.516076 | 5.4:+11436456 | MS.gene010437:CDS |
| CTTACCATAAATCCTGCTAC+AGG | 0.517147 | 5.4:+11437525 | MS.gene010437:CDS |
| CAGATCCCGGCTAATTCAGC+TGG | 0.521586 | 5.4:+11438498 | MS.gene010437:intron |
| CTGTAGCAGGATTTATGGTA+AGG | 0.522745 | 5.4:-11437524 | None:intergenic |
| GGTGGAAAGAGGTGGGGAGA+AGG | 0.524431 | 5.4:-11436516 | None:intergenic |
| GCACTAAATGAGGCCATTGA+GGG | 0.528915 | 5.4:+11438912 | MS.gene010437:CDS |
| GTGCTGTCGAGCTCATGCGT+TGG | 0.530772 | 5.4:-11438567 | None:intergenic |
| TATGGAGATGGATTCAGATC+GGG | 0.531474 | 5.4:+11439817 | MS.gene010437:CDS |
| ACCTCACCAGCCTATGGAGA+TGG | 0.534287 | 5.4:+11439805 | MS.gene010437:CDS |
| CCTCAAGTTGATCTTTGGCA+CGG | 0.534386 | 5.4:-11436410 | None:intergenic |
| CTGAATCCATCTCCATAGGC+TGG | 0.535577 | 5.4:-11439811 | None:intergenic |
| GACGAGGAAGATGAGAATGT+TGG | 0.536005 | 5.4:+11436327 | MS.gene010437:CDS |
| ACCTGAATCCTGGTGGAAAG+AGG | 0.537281 | 5.4:-11436527 | None:intergenic |
| CGATCTGAATCCATCTCCAT+AGG | 0.537412 | 5.4:-11439815 | None:intergenic |
| TGGCTGTCACTTCGCATCGA+CGG | 0.539258 | 5.4:-11439294 | None:intergenic |
| CTCATGAGATAATGCATGCA+TGG | 0.539682 | 5.4:+11439448 | MS.gene010437:CDS |
| CCTTCTAGCTAAAATTCAGC+AGG | 0.540630 | 5.4:+11436374 | MS.gene010437:CDS |
| AGCACTAAATGAGGCCATTG+AGG | 0.541852 | 5.4:+11438911 | MS.gene010437:CDS |
| TATCAGAGGAGGATCTGAAA+GGG | 0.551935 | 5.4:+11435946 | MS.gene010437:CDS |
| TGTTATATGGTTACCTAGGA+AGG | 0.552829 | 5.4:-11439333 | None:intergenic |
| GAATCCTGGTGGAAAGAGGT+GGG | 0.554764 | 5.4:-11436523 | None:intergenic |
| CATGCATTATCTCATGAGCT+AGG | 0.555420 | 5.4:-11439443 | None:intergenic |
| CTATCAGAGGAGGATCTGAA+AGG | 0.555665 | 5.4:+11435945 | MS.gene010437:CDS |
| AGAAAACCAAGTATAGGGGC+AGG | 0.561310 | 5.4:+11439229 | MS.gene010437:CDS |
| TGAGGCCAGCTGAATTAGCC+GGG | 0.562601 | 5.4:-11438503 | None:intergenic |
| TTGAGGCCAGAAATTGAAGA+AGG | 0.563599 | 5.4:+11439589 | MS.gene010437:CDS |
| TGATTGGCAGATGGCAAGCA+TGG | 0.564914 | 5.4:-11437298 | None:intergenic |
| GGGCAATACAATGGCAAACA+TGG | 0.564946 | 5.4:+11435709 | MS.gene010437:CDS |
| ACGGGTCAGTCTATAAGGCT+TGG | 0.569106 | 5.4:-11439275 | None:intergenic |
| TTTAAGAAAACCAAGTATAG+GGG | 0.569581 | 5.4:+11439225 | MS.gene010437:CDS |
| GTAAGGACGGTTGCTAGACA+TGG | 0.570040 | 5.4:-11437507 | None:intergenic |
| TGAATCCTGGTGGAAAGAGG+TGG | 0.571390 | 5.4:-11436524 | None:intergenic |
| GCCCATACTTAAGTACCGCC+TGG | 0.571618 | 5.4:-11439843 | None:intergenic |
| AGGAAGACGAGCAACTTGCA+AGG | 0.572451 | 5.4:+11436430 | MS.gene010437:CDS |
| AGGAATTCCTACGGTGGTGA+CGG | 0.573043 | 5.4:-11439108 | None:intergenic |
| TCTAGTATTTCATGGTAGAG+AGG | 0.573281 | 5.4:-11438825 | None:intergenic |
| CTATGGAGATGGATTCAGAT+CGG | 0.581389 | 5.4:+11439816 | MS.gene010437:CDS |
| TGCAATGCTGAGATTGGCCA+TGG | 0.581581 | 5.4:+11437224 | MS.gene010437:CDS |
| TGTCTTTCCACCAAAAGCAT+AGG | 0.584605 | 5.4:-11438888 | None:intergenic |
| ACCAGGCGGTACTTAAGTAT+GGG | 0.585146 | 5.4:+11439842 | MS.gene010437:CDS |
| TTATAGGTTATCCCAACTTG+AGG | 0.585861 | 5.4:+11439572 | MS.gene010437:intron |
| TGGTTATCATGTCTGTGACT+CGG | 0.588138 | 5.4:-11439255 | None:intergenic |
| AGAAGGAATCTGTCAAGTGT+TGG | 0.595703 | 5.4:+11439606 | MS.gene010437:CDS |
| GGAAAGACAAGCACTAAATG+AGG | 0.596661 | 5.4:+11438902 | MS.gene010437:CDS |
| AAGGCCATACAAAACAAGAA+TGG | 0.597233 | 5.4:-11439314 | None:intergenic |
| GGAAGACGAGCAACTTGCAA+GGG | 0.598064 | 5.4:+11436431 | MS.gene010437:CDS |
| AGCAGGATTTATGGTAAGGA+CGG | 0.599912 | 5.4:-11437520 | None:intergenic |
| TCCATCTCCATAGGCTGGTG+AGG | 0.600925 | 5.4:-11439806 | None:intergenic |
| CATAATCAGTGATTGGCAGA+TGG | 0.606004 | 5.4:-11437307 | None:intergenic |
| GTCAAGTGTTGGCTCATATG+TGG | 0.608811 | 5.4:+11439617 | MS.gene010437:CDS |
| GGTCAAATGGATATGATCAA+GGG | 0.611026 | 5.4:-11439875 | None:intergenic |
| TGCACTCTCTCTATCAGAGG+AGG | 0.611907 | 5.4:+11435935 | MS.gene010437:CDS |
| ACTGGTTCTCCTCCTCGACA+TGG | 0.617399 | 5.4:+11436474 | MS.gene010437:CDS |
| TTCTTCGATGATGCAGAACA+CGG | 0.620817 | 5.4:-11439718 | None:intergenic |
| TATAATTACCTGAATCCTGG+TGG | 0.627643 | 5.4:-11436534 | None:intergenic |
| AATCCTGGTGGAAAGAGGTG+GGG | 0.630175 | 5.4:-11436522 | None:intergenic |
| TAGCTTTCAAACTTTCAACA+TGG | 0.634802 | 5.4:-11439907 | None:intergenic |
| AGAGAATCTTTGCCATGTCG+AGG | 0.635073 | 5.4:-11436486 | None:intergenic |
| GATGAGCTCTATACTCAATG+AGG | 0.636611 | 5.4:-11438521 | None:intergenic |
| ATTTCAGGAGGGCAATACAA+TGG | 0.636955 | 5.4:+11435700 | MS.gene010437:CDS |
| TTACCATAAATCCTGCTACA+GGG | 0.641135 | 5.4:+11437526 | MS.gene010437:CDS |
| GGATAATCATCATAGTTCAG+TGG | 0.641892 | 5.4:+11435747 | MS.gene010437:CDS |
| GCATGGCATTGGAAGCATTG+TGG | 0.647853 | 5.4:-11437281 | None:intergenic |
| GATGAAGACGAAGACGAAGG+CGG | 0.650656 | 5.4:-11439682 | None:intergenic |
| CACCATTTACCTGAAACTAG+AGG | 0.653687 | 5.4:+11439062 | MS.gene010437:CDS |
| AATTGCACTCTCTCTATCAG+AGG | 0.658444 | 5.4:+11435932 | MS.gene010437:CDS |
| TGTTCTGCATCATCGAAGAA+GGG | 0.659899 | 5.4:+11439721 | MS.gene010437:CDS |
| TCTAATCATAGAATTTCAGG+AGG | 0.660809 | 5.4:+11435688 | MS.gene010437:CDS |
| GAATCTTTGCCATGTCGAGG+AGG | 0.671664 | 5.4:-11436483 | None:intergenic |
| TTGTAGCTGCGAAAGAATGG+AGG | 0.672189 | 5.4:+11438599 | MS.gene010437:CDS |
| GATGATGAAGACGAAGACGA+AGG | 0.677210 | 5.4:-11439685 | None:intergenic |
| CCGTGCCAAAGATCAACTTG+AGG | 0.706058 | 5.4:+11436410 | MS.gene010437:CDS |
| ACAACTTTGTAAAATTGACG+AGG | 0.708039 | 5.4:+11436311 | MS.gene010437:CDS |
| CTAATCATAGAATTTCAGGA+GGG | 0.718623 | 5.4:+11435689 | MS.gene010437:CDS |
| CTTTCGCAGCTACAACAACG+AGG | 0.721804 | 5.4:-11438591 | None:intergenic |
| TTCGATGATGCAGAACACGG+CGG | 0.732822 | 5.4:-11439715 | None:intergenic |
| ATTCAGATCGGGTTACCAGG+CGG | 0.751020 | 5.4:+11439828 | MS.gene010437:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTACTTAATAAGTTAT+AGG | - | chr5.4:11438200-11438219 | None:intergenic | 10.0% |
| !!! | AAGTAAATAATTCAATTTTT+AGG | - | chr5.4:11437091-11437110 | None:intergenic | 10.0% |
| !!! | ATATATGGTTTTTTTTTTAT+AGG | + | chr5.4:11439556-11439575 | MS.gene010437:intron | 10.0% |
| !!! | TTTGAATCATTTTATATAAT+CGG | + | chr5.4:11436832-11436851 | MS.gene010437:intron | 10.0% |
| !!! | TTTTTTTTTATACTAACATA+TGG | + | chr5.4:11437038-11437057 | MS.gene010437:intron | 10.0% |
| !! | AAGATTTGTGAATTATATAA+CGG | + | chr5.4:11439175-11439194 | MS.gene010437:intron | 15.0% |
| !! | ACAATTATTAGATTTCAAAT+AGG | - | chr5.4:11438068-11438087 | None:intergenic | 15.0% |
| !! | TTAATGTGTATAAGAAATAT+GGG | + | chr5.4:11436056-11436075 | MS.gene010437:intron | 15.0% |
| !! | TTATGAAGATTATATCTATA+TGG | - | chr5.4:11436997-11437016 | None:intergenic | 15.0% |
| !!! | GATTTTCATAAAAAAGTATT+TGG | - | chr5.4:11436592-11436611 | None:intergenic | 15.0% |
| !!! | TACTTAGATTTTATTAACTA+AGG | - | chr5.4:11436946-11436965 | None:intergenic | 15.0% |
| !!! | TATTAAGTATTTCTGAATTA+TGG | + | chr5.4:11436707-11436726 | MS.gene010437:intron | 15.0% |
| !!! | TTGAATCATTTTATATAATC+GGG | + | chr5.4:11436833-11436852 | MS.gene010437:intron | 15.0% |
| !! | AAAAAAATCGTGAGATATAA+CGG | - | chr5.4:11437025-11437044 | None:intergenic | 20.0% |
| !! | ATAGTTTGAATATGTAATTG+TGG | + | chr5.4:11435854-11435873 | MS.gene010437:intron | 20.0% |
| !! | CAATACGATTATGAATAATA+CGG | + | chr5.4:11437458-11437477 | MS.gene010437:intron | 20.0% |
| !! | CATAAAATTCTAGTATTTCA+TGG | - | chr5.4:11438836-11438855 | None:intergenic | 20.0% |
| !! | CATAAATTAGAATAGATACT+AGG | - | chr5.4:11438692-11438711 | None:intergenic | 20.0% |
| !! | CTAGTATCTATTCTAATTTA+TGG | + | chr5.4:11438690-11438709 | MS.gene010437:intron | 20.0% |
| !! | GTTAATGTGTATAAGAAATA+TGG | + | chr5.4:11436055-11436074 | MS.gene010437:intron | 20.0% |
| !! | GTTGTTCATTTGTTTAAATA+TGG | - | chr5.4:11437162-11437181 | None:intergenic | 20.0% |
| !! | TAATGTGTATAAGAAATATG+GGG | + | chr5.4:11436057-11436076 | MS.gene010437:intron | 20.0% |
| !! | TTAAAACATTAATAGCAACT+GGG | + | chr5.4:11438355-11438374 | MS.gene010437:intron | 20.0% |
| !! | TTTCAATTTCTTACTAATGA+AGG | - | chr5.4:11435786-11435805 | None:intergenic | 20.0% |
| !!! | AAAAGATATTTTGAATCCTT+TGG | - | chr5.4:11438735-11438754 | None:intergenic | 20.0% |
| !!! | AAATATCTTTTTCTTGATGA+TGG | + | chr5.4:11438744-11438763 | MS.gene010437:CDS | 20.0% |
| !!! | ATTTTAAGAAAACCAAGTAT+AGG | + | chr5.4:11439223-11439242 | MS.gene010437:CDS | 20.0% |
| !!! | GAAATACTAGAATTTTATGA+AGG | + | chr5.4:11438837-11438856 | MS.gene010437:CDS | 20.0% |
| !!! | TTTTAAGAAAACCAAGTATA+GGG | + | chr5.4:11439224-11439243 | MS.gene010437:CDS | 20.0% |
| !!! | TTTTACTTATACTTTGGTAT+GGG | - | chr5.4:11436231-11436250 | None:intergenic | 20.0% |
| ! | AAAGTAACAACTCTTAAGTT+AGG | - | chr5.4:11439017-11439036 | None:intergenic | 25.0% |
| ! | ATAACTATGACTGAAATTTG+AGG | - | chr5.4:11438137-11438156 | None:intergenic | 25.0% |
| ! | ATATATAATTACCTGAATCC+TGG | - | chr5.4:11436540-11436559 | None:intergenic | 25.0% |
| ! | ATCCATGAACATATGAAAAT+AGG | - | chr5.4:11437131-11437150 | None:intergenic | 25.0% |
| ! | ATTATGAGATAAAGAACATG+AGG | - | chr5.4:11436256-11436275 | None:intergenic | 25.0% |
| ! | CATACCAAAGTATAAGTAAA+AGG | + | chr5.4:11436230-11436249 | MS.gene010437:intron | 25.0% |
| ! | CTTTCACTGTATATAATTCA+AGG | + | chr5.4:11439387-11439406 | MS.gene010437:intron | 25.0% |
| ! | GCTAAGTTAGACAAAATATA+TGG | + | chr5.4:11439541-11439560 | MS.gene010437:intron | 25.0% |
| ! | GTTAAAACATTAATAGCAAC+TGG | + | chr5.4:11438354-11438373 | MS.gene010437:intron | 25.0% |
| ! | GTTTATCATGTTTCATATCA+TGG | - | chr5.4:11436889-11436908 | None:intergenic | 25.0% |
| ! | GTTTCATAACATATTCTGTT+TGG | - | chr5.4:11436681-11436700 | None:intergenic | 25.0% |
| ! | TAAAACATTAATAGCAACTG+GGG | + | chr5.4:11438356-11438375 | MS.gene010437:intron | 25.0% |
| ! | TAGTTGTTCATTTCAATAAC+TGG | + | chr5.4:11437971-11437990 | MS.gene010437:intron | 25.0% |
| ! | TATCATATGCTTGAAATATG+AGG | + | chr5.4:11438160-11438179 | MS.gene010437:intron | 25.0% |
| ! | TATGTTTATAGATTGTTGAC+AGG | + | chr5.4:11439414-11439433 | MS.gene010437:intron | 25.0% |
| ! | TCAGAAATACTTAATAACTG+AGG | - | chr5.4:11436703-11436722 | None:intergenic | 25.0% |
| ! | TGAAGGTTTAAATATGAAAG+TGG | + | chr5.4:11438854-11438873 | MS.gene010437:CDS | 25.0% |
| ! | TGTTTCCTAATTAGTAACAA+CGG | - | chr5.4:11438656-11438675 | None:intergenic | 25.0% |
| ! | TTTAAGAAAACCAAGTATAG+GGG | + | chr5.4:11439225-11439244 | MS.gene010437:CDS | 25.0% |
| !! | AAAAAGTGTAAAGGAAAACA+AGG | - | chr5.4:11436788-11436807 | None:intergenic | 25.0% |
| !! | AAAAGTGTAAAGGAAAACAA+GGG | - | chr5.4:11436787-11436806 | None:intergenic | 25.0% |
| !! | ATCCTATTTTCATATGTTCA+TGG | + | chr5.4:11437126-11437145 | MS.gene010437:intron | 25.0% |
| !! | CTTTTACTTATACTTTGGTA+TGG | - | chr5.4:11436232-11436251 | None:intergenic | 25.0% |
| !! | TAAGAAATATGGGGATATTT+TGG | + | chr5.4:11436066-11436085 | MS.gene010437:intron | 25.0% |
| !!! | TACAATTTTTCTGAGACTTA+AGG | + | chr5.4:11435829-11435848 | MS.gene010437:intron | 25.0% |
| !!! | TACTTGGTTTTCTTAAAATC+TGG | - | chr5.4:11439222-11439241 | None:intergenic | 25.0% |
| !!! | TTCTGTTTGGCAATATTTTT+TGG | - | chr5.4:11436668-11436687 | None:intergenic | 25.0% |
| AAACAAATGAACAACATACC+TGG | + | chr5.4:11437167-11437186 | MS.gene010437:intron | 30.0% | |
| AAAGTGTAAAGGAAAACAAG+GGG | - | chr5.4:11436786-11436805 | None:intergenic | 30.0% | |
| AACTATATCCAACTCATGAA+GGG | - | chr5.4:11437956-11437975 | None:intergenic | 30.0% | |
| AATGACTGCTTCATATATTC+TGG | + | chr5.4:11437916-11437935 | MS.gene010437:intron | 30.0% | |
| ACAACTTTGTAAAATTGACG+AGG | + | chr5.4:11436311-11436330 | MS.gene010437:CDS | 30.0% | |
| ACTCAGCAATTCATTAGTTA+GGG | + | chr5.4:11437400-11437419 | MS.gene010437:intron | 30.0% | |
| AGTTTGAAAAGAGTCGAATT+TGG | - | chr5.4:11439139-11439158 | None:intergenic | 30.0% | |
| ATCAAAGTAGTCTCTTATCA+TGG | + | chr5.4:11437647-11437666 | MS.gene010437:intron | 30.0% | |
| ATTCAATTAAGTTTGAGCAC+TGG | + | chr5.4:11436456-11436475 | MS.gene010437:CDS | 30.0% | |
| ATTTACTTTGTCACGAAACA+TGG | + | chr5.4:11437103-11437122 | MS.gene010437:intron | 30.0% | |
| ATTTCTTGCATGATGTTATC+AGG | - | chr5.4:11439502-11439521 | None:intergenic | 30.0% | |
| CTAATCATAGAATTTCAGGA+GGG | + | chr5.4:11435689-11435708 | MS.gene010437:CDS | 30.0% | |
| GAAAACTGTAAAGGAACAAA+TGG | - | chr5.4:11437488-11437507 | None:intergenic | 30.0% | |
| GTTTCCTAATTAGTAACAAC+GGG | - | chr5.4:11438655-11438674 | None:intergenic | 30.0% | |
| TACTCAGCAATTCATTAGTT+AGG | + | chr5.4:11437399-11437418 | MS.gene010437:intron | 30.0% | |
| TCAGAGATTTAGTACATATG+CGG | + | chr5.4:11436740-11436759 | MS.gene010437:intron | 30.0% | |
| TCTAATCATAGAATTTCAGG+AGG | + | chr5.4:11435688-11435707 | MS.gene010437:CDS | 30.0% | |
| TGCAACTTAAAAATCTTCCA+TGG | - | chr5.4:11437244-11437263 | None:intergenic | 30.0% | |
| TGGTTTACAAAGTTTCTCAA+TGG | + | chr5.4:11435664-11435683 | MS.gene010437:CDS | 30.0% | |
| TTGCTTCACTATTGAATGTA+GGG | + | chr5.4:11439035-11439054 | MS.gene010437:intron | 30.0% | |
| TTGTGAAAGCAGATGTTATA+TGG | - | chr5.4:11439349-11439368 | None:intergenic | 30.0% | |
| TTTATCTCATAATGTCTCAG+AGG | + | chr5.4:11436263-11436282 | MS.gene010437:intron | 30.0% | |
| TTTCTTGCATGATGTTATCA+GGG | - | chr5.4:11439501-11439520 | None:intergenic | 30.0% | |
| TTTGCTTCACTATTGAATGT+AGG | + | chr5.4:11439034-11439053 | MS.gene010437:intron | 30.0% | |
| ! | AACATGGTGATGATAGAATT+TGG | + | chr5.4:11435725-11435744 | MS.gene010437:CDS | 30.0% |
| ! | AAGAGGACAAAAAAGTGTAA+AGG | - | chr5.4:11436797-11436816 | None:intergenic | 30.0% |
| ! | ACATGGTGATGATAGAATTT+GGG | + | chr5.4:11435726-11435745 | MS.gene010437:CDS | 30.0% |
| ! | ACTGAAATTTGAGGTTAATC+AGG | - | chr5.4:11438128-11438147 | None:intergenic | 30.0% |
| ! | TCATGTTAGTTTCTCTTTAC+AGG | - | chr5.4:11438091-11438110 | None:intergenic | 30.0% |
| ! | TGATAGACATGTCATTGTTT+TGG | - | chr5.4:11438412-11438431 | None:intergenic | 30.0% |
| ! | TGGGTAACATATGTTTCTAA+TGG | + | chr5.4:11436126-11436145 | MS.gene010437:intron | 30.0% |
| !! | CAGTATTTTTGTATCCAGAA+AGG | - | chr5.4:11438546-11438565 | None:intergenic | 30.0% |
| !! | TCTGATTTTGAGAAGAAACT+TGG | + | chr5.4:11439751-11439770 | MS.gene010437:CDS | 30.0% |
| !! | TTGGATTTGCTAATCAGATA+AGG | - | chr5.4:11436573-11436592 | None:intergenic | 30.0% |
| !!! | GGAAGATTTTTAAGTTGCAT+GGG | + | chr5.4:11437245-11437264 | MS.gene010437:CDS | 30.0% |
| !!! | TGGAAGATTTTTAAGTTGCA+TGG | + | chr5.4:11437244-11437263 | MS.gene010437:CDS | 30.0% |
| AACAGTATTGCCATTGTGAA+AGG | + | chr5.4:11436906-11436925 | MS.gene010437:intron | 35.0% | |
| AAGGCCATACAAAACAAGAA+TGG | - | chr5.4:11439317-11439336 | None:intergenic | 35.0% | |
| AAGTGTAAAGGAAAACAAGG+GGG | - | chr5.4:11436785-11436804 | None:intergenic | 35.0% | |
| ACAGTATTGCCATTGTGAAA+GGG | + | chr5.4:11436907-11436926 | MS.gene010437:intron | 35.0% | |
| ACCTAATAAAGTGGACGATA+AGG | + | chr5.4:11436631-11436650 | MS.gene010437:intron | 35.0% | |
| AGCTTCTTAAACATTGAGGT+TGG | - | chr5.4:11437834-11437853 | None:intergenic | 35.0% | |
| AGTTAAGTTCCAACTCAAAG+TGG | + | chr5.4:11436106-11436125 | MS.gene010437:intron | 35.0% | |
| ATAACAGAAAGACAGAAGGA+GGG | - | chr5.4:11438994-11439013 | None:intergenic | 35.0% | |
| ATATGTTACCCACTTTGAGT+TGG | - | chr5.4:11436118-11436137 | None:intergenic | 35.0% | |
| CAACTATATCCAACTCATGA+AGG | - | chr5.4:11437957-11437976 | None:intergenic | 35.0% | |
| CAGATGTTATATGGTTACCT+AGG | - | chr5.4:11439340-11439359 | None:intergenic | 35.0% | |
| CAGATTCCTTCTTCAATTTC+TGG | - | chr5.4:11439598-11439617 | None:intergenic | 35.0% | |
| CTAACCTCATAATCAGTGAT+TGG | - | chr5.4:11437317-11437336 | None:intergenic | 35.0% | |
| CTAATGGTTAGAGATCATTG+AGG | + | chr5.4:11436142-11436161 | MS.gene010437:intron | 35.0% | |
| CTAGACATGGAAAACTGTAA+AGG | - | chr5.4:11437497-11437516 | None:intergenic | 35.0% | |
| CTTGATCATATCCATTTGAC+CGG | + | chr5.4:11439877-11439896 | MS.gene010437:CDS | 35.0% | |
| GAACAGCTTCTTAAACATTG+AGG | - | chr5.4:11437838-11437857 | None:intergenic | 35.0% | |
| GCATATGTACTAAATCTCTG+AGG | - | chr5.4:11436741-11436760 | None:intergenic | 35.0% | |
| GCTTCATATATTCTGGTAAC+CGG | + | chr5.4:11437923-11437942 | MS.gene010437:intron | 35.0% | |
| GCTTCTTAAACATTGAGGTT+GGG | - | chr5.4:11437833-11437852 | None:intergenic | 35.0% | |
| GGATAATCATCATAGTTCAG+TGG | + | chr5.4:11435747-11435766 | MS.gene010437:CDS | 35.0% | |
| GGTCAAATGGATATGATCAA+GGG | - | chr5.4:11439878-11439897 | None:intergenic | 35.0% | |
| GTTAAGTTCCAACTCAAAGT+GGG | + | chr5.4:11436107-11436126 | MS.gene010437:intron | 35.0% | |
| GTTCATTTCAATAACTGGTC+TGG | + | chr5.4:11437976-11437995 | MS.gene010437:intron | 35.0% | |
| TAGGATAACAGAAAGACAGA+AGG | - | chr5.4:11438998-11439017 | None:intergenic | 35.0% | |
| TATAATTACCTGAATCCTGG+TGG | - | chr5.4:11436537-11436556 | None:intergenic | 35.0% | |
| TATTCTTCCATTACAGATCC+CGG | + | chr5.4:11438485-11438504 | MS.gene010437:intron | 35.0% | |
| TCTAGTATTTCATGGTAGAG+AGG | - | chr5.4:11438828-11438847 | None:intergenic | 35.0% | |
| TCTCACTTCTCAAAAATGTG+AGG | + | chr5.4:11437856-11437875 | MS.gene010437:intron | 35.0% | |
| TCTTGCAAACATCACATCTT+GGG | - | chr5.4:11437562-11437581 | None:intergenic | 35.0% | |
| TGTTATATGGTTACCTAGGA+AGG | - | chr5.4:11439336-11439355 | None:intergenic | 35.0% | |
| TTACCATAAATCCTGCTACA+GGG | + | chr5.4:11437526-11437545 | MS.gene010437:CDS | 35.0% | |
| TTATAGGTTATCCCAACTTG+AGG | + | chr5.4:11439572-11439591 | MS.gene010437:intron | 35.0% | |
| TTCTTGCAAACATCACATCT+TGG | - | chr5.4:11437563-11437582 | None:intergenic | 35.0% | |
| TTTGGTATGGGATAGATGAT+CGG | - | chr5.4:11436219-11436238 | None:intergenic | 35.0% | |
| ! | ATGAACAACATACCTGGTTT+TGG | + | chr5.4:11437173-11437192 | MS.gene010437:intron | 35.0% |
| ! | CAGAGAAATTTTCCAAAACC+AGG | - | chr5.4:11437188-11437207 | None:intergenic | 35.0% |
| ! | GAGGCCTTTTACTTATACTT+TGG | - | chr5.4:11436237-11436256 | None:intergenic | 35.0% |
| ! | GGCTCTAATCATAGAATTTC+AGG | + | chr5.4:11435685-11435704 | MS.gene010437:CDS | 35.0% |
| !!! | ACAGCCATTCTTGTTTTGTA+TGG | + | chr5.4:11439310-11439329 | MS.gene010437:CDS | 35.0% |
| !!! | AGATTTTTAAGTTGCATGGG+AGG | + | chr5.4:11437248-11437267 | MS.gene010437:CDS | 35.0% |
| !!! | ATGTCTTCTTTTTCGACATC+CGG | - | chr5.4:11435903-11435922 | None:intergenic | 35.0% |
| !!! | ATTTTTAAGTTGCATGGGAG+GGG | + | chr5.4:11437250-11437269 | MS.gene010437:CDS | 35.0% |
| !!! | CATGTCATTGTTTTGGTAAG+AGG | - | chr5.4:11438405-11438424 | None:intergenic | 35.0% |
| !!! | CTTTTTTGTCCTCTTTCTCA+TGG | + | chr5.4:11436802-11436821 | MS.gene010437:intron | 35.0% |
| !!! | GATTTTTAAGTTGCATGGGA+GGG | + | chr5.4:11437249-11437268 | MS.gene010437:CDS | 35.0% |
| !!! | TGAAGGCATTGAATTTTGGA+AGG | - | chr5.4:11438282-11438301 | None:intergenic | 35.0% |
| !!! | TGGTTGAAGGCATTGAATTT+TGG | - | chr5.4:11438286-11438305 | None:intergenic | 35.0% |
| AAATGTCGTCCATGAGAAAG+AGG | - | chr5.4:11436814-11436833 | None:intergenic | 40.0% | |
| AAGAGTCGAATTTGGAAGCA+AGG | - | chr5.4:11439131-11439150 | None:intergenic | 40.0% | |
| AATACTCGAGTATGTTCTGC+TGG | + | chr5.4:11437887-11437906 | MS.gene010437:intron | 40.0% | |
| AATTCAATGCCTTCAACCAC+AGG | + | chr5.4:11438287-11438306 | MS.gene010437:intron | 40.0% | |
| AATTGCACTCTCTCTATCAG+AGG | + | chr5.4:11435932-11435951 | MS.gene010437:CDS | 40.0% | |
| ACACAAAACCCCTTTCACAA+TGG | - | chr5.4:11436919-11436938 | None:intergenic | 40.0% | |
| AGAAGGAATCTGTCAAGTGT+TGG | + | chr5.4:11439606-11439625 | MS.gene010437:CDS | 40.0% | |
| AGCAGGATTTATGGTAAGGA+CGG | - | chr5.4:11437523-11437542 | None:intergenic | 40.0% | |
| AGTATAGAGCTCATCCTTTC+TGG | + | chr5.4:11438529-11438548 | MS.gene010437:CDS | 40.0% | |
| AGTGTAAAGGAAAACAAGGG+GGG | - | chr5.4:11436784-11436803 | None:intergenic | 40.0% | |
| ATACTCGAGTATGTTCTGCT+GGG | + | chr5.4:11437888-11437907 | MS.gene010437:intron | 40.0% | |
| ATCTCATAATGTCTCAGAGG+AGG | + | chr5.4:11436266-11436285 | MS.gene010437:intron | 40.0% | |
| ATGGAAAAGTTCCGGTCAAA+TGG | - | chr5.4:11439891-11439910 | None:intergenic | 40.0% | |
| ATTCAATGCCTTCAACCACA+GGG | + | chr5.4:11438288-11438307 | MS.gene010437:intron | 40.0% | |
| ATTTCAGGAGGGCAATACAA+TGG | + | chr5.4:11435700-11435719 | MS.gene010437:CDS | 40.0% | |
| CACCATTTACCTGAAACTAG+AGG | + | chr5.4:11439062-11439081 | MS.gene010437:CDS | 40.0% | |
| CAGTATTGCCATTGTGAAAG+GGG | + | chr5.4:11436908-11436927 | MS.gene010437:intron | 40.0% | |
| CATAATCAGTGATTGGCAGA+TGG | - | chr5.4:11437310-11437329 | None:intergenic | 40.0% | |
| CATGCATTATCTCATGAGCT+AGG | - | chr5.4:11439446-11439465 | None:intergenic | 40.0% | |
| CCATCCCGTTGTTACTAATT+AGG | + | chr5.4:11438648-11438667 | MS.gene010437:intron | 40.0% | |
| CCTAATTAGTAACAACGGGA+TGG | - | chr5.4:11438651-11438670 | None:intergenic | 40.0% | |
| CGGTCAAATGGATATGATCA+AGG | - | chr5.4:11439879-11439898 | None:intergenic | 40.0% | |
| CTCATGAGATAATGCATGCA+TGG | + | chr5.4:11439448-11439467 | MS.gene010437:CDS | 40.0% | |
| CTGAAAGGGAAGAAAGTTGT+TGG | + | chr5.4:11435960-11435979 | MS.gene010437:CDS | 40.0% | |
| CTGTAGCAGGATTTATGGTA+AGG | - | chr5.4:11437527-11437546 | None:intergenic | 40.0% | |
| CTTACCATAAATCCTGCTAC+AGG | + | chr5.4:11437525-11437544 | MS.gene010437:CDS | 40.0% | |
| GATAACAGAAAGACAGAAGG+AGG | - | chr5.4:11438995-11439014 | None:intergenic | 40.0% | |
| GATGAGCTCTATACTCAATG+AGG | - | chr5.4:11438524-11438543 | None:intergenic | 40.0% | |
| GCCTTATCGTCCACTTTATT+AGG | - | chr5.4:11436635-11436654 | None:intergenic | 40.0% | |
| GCTAGTTGCACCTAATAAAG+TGG | + | chr5.4:11436622-11436641 | MS.gene010437:intron | 40.0% | |
| GGAAAGACAAGCACTAAATG+AGG | + | chr5.4:11438902-11438921 | MS.gene010437:CDS | 40.0% | |
| GTATTTCATGGTAGAGAGGT+TGG | - | chr5.4:11438824-11438843 | None:intergenic | 40.0% | |
| GTCCCACATTGGATAACAAA+TGG | + | chr5.4:11437740-11437759 | MS.gene010437:intron | 40.0% | |
| GTGTCTAGACTCAGCAATTA+TGG | + | chr5.4:11438785-11438804 | MS.gene010437:CDS | 40.0% | |
| TATCAGAGGAGGATCTGAAA+GGG | + | chr5.4:11435946-11435965 | MS.gene010437:CDS | 40.0% | |
| TGCATGATGTTATCAGGGAA+CGG | - | chr5.4:11439496-11439515 | None:intergenic | 40.0% | |
| TGGTTATCATGTCTGTGACT+CGG | - | chr5.4:11439258-11439277 | None:intergenic | 40.0% | |
| TGTGTAAAAGAGTCCCACAT+TGG | + | chr5.4:11437729-11437748 | MS.gene010437:intron | 40.0% | |
| TGTTCTGCATCATCGAAGAA+GGG | + | chr5.4:11439721-11439740 | MS.gene010437:CDS | 40.0% | |
| TTCTTCGATGATGCAGAACA+CGG | - | chr5.4:11439721-11439740 | None:intergenic | 40.0% | |
| TTGAGGCCAGAAATTGAAGA+AGG | + | chr5.4:11439589-11439608 | MS.gene010437:CDS | 40.0% | |
| TTGGAAGCAAGGAATTCCTA+CGG | - | chr5.4:11439120-11439139 | None:intergenic | 40.0% | |
| TTGTTGTAGCTGCGAAAGAA+TGG | + | chr5.4:11438596-11438615 | MS.gene010437:CDS | 40.0% | |
| TTTCTAATCTGTGCAGCCAA+AGG | + | chr5.4:11438716-11438735 | MS.gene010437:intron | 40.0% | |
| ! | AACAACGGGATGGAATGTTT+TGG | - | chr5.4:11438641-11438660 | None:intergenic | 40.0% |
| ! | ACAACGGGATGGAATGTTTT+GGG | - | chr5.4:11438640-11438659 | None:intergenic | 40.0% |
| ! | CACATTCTTTTCTCCCTCAA+TGG | - | chr5.4:11438928-11438947 | None:intergenic | 40.0% |
| ! | CCTGAACATGTGTTTAGAGT+GGG | + | chr5.4:11437763-11437782 | MS.gene010437:intron | 40.0% |
| ! | CCTTCTAGCTAAAATTCAGC+AGG | + | chr5.4:11436374-11436393 | MS.gene010437:CDS | 40.0% |
| ! | CTATGGAGATGGATTCAGAT+CGG | + | chr5.4:11439816-11439835 | MS.gene010437:CDS | 40.0% |
| ! | CTGAACATGTGTTTAGAGTG+GGG | + | chr5.4:11437764-11437783 | MS.gene010437:intron | 40.0% |
| ! | GTCCTCTAGTTTCAGGTAAA+TGG | - | chr5.4:11439067-11439086 | None:intergenic | 40.0% |
| ! | TATGGAGATGGATTCAGATC+GGG | + | chr5.4:11439817-11439836 | MS.gene010437:CDS | 40.0% |
| ! | TCTGCCAATCACTGATTATG+AGG | + | chr5.4:11437310-11437329 | MS.gene010437:CDS | 40.0% |
| ! | TGAACATGTGTTTAGAGTGG+GGG | + | chr5.4:11437765-11437784 | MS.gene010437:intron | 40.0% |
| ! | TGTCTTTCCACCAAAAGCAT+AGG | - | chr5.4:11438891-11438910 | None:intergenic | 40.0% |
| !! | AGGCCATTTGTTATCCAATG+TGG | - | chr5.4:11437746-11437765 | None:intergenic | 40.0% |
| !! | GGCATTGAATTTTGGAAGGA+AGG | - | chr5.4:11438278-11438297 | None:intergenic | 40.0% |
| !! | GGCCATTTGTTATCCAATGT+GGG | - | chr5.4:11437745-11437764 | None:intergenic | 40.0% |
| !! | GTCTTCCTCAAGTTGATCTT+TGG | - | chr5.4:11436418-11436437 | None:intergenic | 40.0% |
| !! | TCAATTTCTGGCCTCAAGTT+GGG | - | chr5.4:11439586-11439605 | None:intergenic | 40.0% |
| !! | TTCAATTTCTGGCCTCAAGT+TGG | - | chr5.4:11439587-11439606 | None:intergenic | 40.0% |
| !! | TTGTTTTGTATGGCCTTCCT+AGG | + | chr5.4:11439320-11439339 | MS.gene010437:CDS | 40.0% |
| !!! | CCTGCTGAATTTTAGCTAGA+AGG | - | chr5.4:11436377-11436396 | None:intergenic | 40.0% |
| AATTGTGGTGAACTGAGTGC+AGG | + | chr5.4:11435869-11435888 | MS.gene010437:intron | 45.0% | |
| ACCAGGCGGTACTTAAGTAT+GGG | + | chr5.4:11439842-11439861 | MS.gene010437:CDS | 45.0% | |
| AGAAAACCAAGTATAGGGGC+AGG | + | chr5.4:11439229-11439248 | MS.gene010437:CDS | 45.0% | |
| AGAGAATCTTTGCCATGTCG+AGG | - | chr5.4:11436489-11436508 | None:intergenic | 45.0% | |
| AGATAATGCATGCATGGCTC+AGG | + | chr5.4:11439454-11439473 | MS.gene010437:CDS | 45.0% | |
| AGCACTAAATGAGGCCATTG+AGG | + | chr5.4:11438911-11438930 | MS.gene010437:CDS | 45.0% | |
| ATATATTCTGGTAACCGGCC+TGG | + | chr5.4:11437928-11437947 | MS.gene010437:intron | 45.0% | |
| CCCACTCTAAACACATGTTC+AGG | - | chr5.4:11437766-11437785 | None:intergenic | 45.0% | |
| CGATCTGAATCCATCTCCAT+AGG | - | chr5.4:11439818-11439837 | None:intergenic | 45.0% | |
| CTAACACAACCCCACAAAAC+CGG | - | chr5.4:11437809-11437828 | None:intergenic | 45.0% | |
| CTATCAGAGGAGGATCTGAA+AGG | + | chr5.4:11435945-11435964 | MS.gene010437:CDS | 45.0% | |
| GAATTAGCCGGGATCTGTAA+TGG | - | chr5.4:11438495-11438514 | None:intergenic | 45.0% | |
| GACGAGGAAGATGAGAATGT+TGG | + | chr5.4:11436327-11436346 | MS.gene010437:CDS | 45.0% | |
| GATGATGAAGACGAAGACGA+AGG | - | chr5.4:11439688-11439707 | None:intergenic | 45.0% | |
| GCACTAAATGAGGCCATTGA+GGG | + | chr5.4:11438912-11438931 | MS.gene010437:CDS | 45.0% | |
| GCCTGAACATGTGTTTAGAG+TGG | + | chr5.4:11437762-11437781 | MS.gene010437:intron | 45.0% | |
| GCTGCAATGTACATATGCTC+TGG | + | chr5.4:11437688-11437707 | MS.gene010437:intron | 45.0% | |
| GGGCAATACAATGGCAAACA+TGG | + | chr5.4:11435709-11435728 | MS.gene010437:CDS | 45.0% | |
| GTGTTCTGCATCATCGAAGA+AGG | + | chr5.4:11439720-11439739 | MS.gene010437:CDS | 45.0% | |
| TACCAGGCGGTACTTAAGTA+TGG | + | chr5.4:11439841-11439860 | MS.gene010437:CDS | 45.0% | |
| TCTCCCTGTAGCAGGATTTA+TGG | - | chr5.4:11437532-11437551 | None:intergenic | 45.0% | |
| TGCTTTCACAATCTAGCGCT+TGG | + | chr5.4:11439358-11439377 | MS.gene010437:intron | 45.0% | |
| TGGTACTGTGGAACAGATCA+TGG | + | chr5.4:11437996-11438015 | MS.gene010437:intron | 45.0% | |
| TGTTGCATTCATACTCCCTG+TGG | - | chr5.4:11438306-11438325 | None:intergenic | 45.0% | |
| TTCATACTCCCTGTGGTTGA+AGG | - | chr5.4:11438299-11438318 | None:intergenic | 45.0% | |
| TTGTAGCTGCGAAAGAATGG+AGG | + | chr5.4:11438599-11438618 | MS.gene010437:CDS | 45.0% | |
| TTTCTCTGCAGAATCTGTGC+TGG | + | chr5.4:11437200-11437219 | MS.gene010437:intron | 45.0% | |
| ! | AAGCAGAGTCCTCTAGTTTC+AGG | - | chr5.4:11439074-11439093 | None:intergenic | 45.0% |
| ! | CAATAACTGGTCTGGTACTG+TGG | + | chr5.4:11437984-11438003 | MS.gene010437:intron | 45.0% |
| ! | GCAAGTTCCTATGCTTTTGG+TGG | + | chr5.4:11438881-11438900 | MS.gene010437:CDS | 45.0% |
| ! | GCAGCAAGTTCCTATGCTTT+TGG | + | chr5.4:11438878-11438897 | MS.gene010437:CDS | 45.0% |
| ! | GTGAGGTATCTGACTCAATC+TGG | - | chr5.4:11439792-11439811 | None:intergenic | 45.0% |
| ! | TGCAAGCAACAAGTGTTGTG+TGG | + | chr5.4:11438448-11438467 | MS.gene010437:intron | 45.0% |
| !! | CCTCAAGTTGATCTTTGGCA+CGG | - | chr5.4:11436413-11436432 | None:intergenic | 45.0% |
| !! | GTCAAGTGTTGGCTCATATG+TGG | + | chr5.4:11439617-11439636 | MS.gene010437:CDS | 45.0% |
| AATCCTGGTGGAAAGAGGTG+GGG | - | chr5.4:11436525-11436544 | None:intergenic | 50.0% | |
| ACCTCTTTCCACCAGGATTC+AGG | + | chr5.4:11436526-11436545 | MS.gene010437:CDS | 50.0% | |
| ACCTGAATCCTGGTGGAAAG+AGG | - | chr5.4:11436530-11436549 | None:intergenic | 50.0% | |
| ACGGGTCAGTCTATAAGGCT+TGG | - | chr5.4:11439278-11439297 | None:intergenic | 50.0% | |
| AGGAAGACGAGCAACTTGCA+AGG | + | chr5.4:11436430-11436449 | MS.gene010437:CDS | 50.0% | |
| AGGAATTCCTACGGTGGTGA+CGG | - | chr5.4:11439111-11439130 | None:intergenic | 50.0% | |
| ATGAGGCCAGCTGAATTAGC+CGG | - | chr5.4:11438507-11438526 | None:intergenic | 50.0% | |
| ATTCAGATCGGGTTACCAGG+CGG | + | chr5.4:11439828-11439847 | MS.gene010437:CDS | 50.0% | |
| CATCGACGGGTCAGTCTATA+AGG | - | chr5.4:11439283-11439302 | None:intergenic | 50.0% | |
| CATGCATGGCTCAGGCTTAA+AGG | + | chr5.4:11439462-11439481 | MS.gene010437:CDS | 50.0% | |
| CCGTGCCAAAGATCAACTTG+AGG | + | chr5.4:11436410-11436429 | MS.gene010437:CDS | 50.0% | |
| CTGAATCCATCTCCATAGGC+TGG | - | chr5.4:11439814-11439833 | None:intergenic | 50.0% | |
| CTTTCGCAGCTACAACAACG+AGG | - | chr5.4:11438594-11438613 | None:intergenic | 50.0% | |
| GAAGCAAGGAATTCCTACGG+TGG | - | chr5.4:11439117-11439136 | None:intergenic | 50.0% | |
| GAATCCTGGTGGAAAGAGGT+GGG | - | chr5.4:11436526-11436545 | None:intergenic | 50.0% | |
| GAATCTTTGCCATGTCGAGG+AGG | - | chr5.4:11436486-11436505 | None:intergenic | 50.0% | |
| GATGAAGACGAAGACGAAGG+CGG | - | chr5.4:11439685-11439704 | None:intergenic | 50.0% | |
| GCTGGATGCAATGCTGAGAT+TGG | + | chr5.4:11437218-11437237 | MS.gene010437:CDS | 50.0% | |
| GGAAGACGAGCAACTTGCAA+GGG | + | chr5.4:11436431-11436450 | MS.gene010437:CDS | 50.0% | |
| GTAAGGACGGTTGCTAGACA+TGG | - | chr5.4:11437510-11437529 | None:intergenic | 50.0% | |
| TCAGATACCTCACCAGCCTA+TGG | + | chr5.4:11439799-11439818 | MS.gene010437:CDS | 50.0% | |
| TCCAACTCATGAAGGGATCC+AGG | - | chr5.4:11437949-11437968 | None:intergenic | 50.0% | |
| TGAATCCTGGTGGAAAGAGG+TGG | - | chr5.4:11436527-11436546 | None:intergenic | 50.0% | |
| TGATTGGCAGATGGCAAGCA+TGG | - | chr5.4:11437301-11437320 | None:intergenic | 50.0% | |
| TGCACTCTCTCTATCAGAGG+AGG | + | chr5.4:11435935-11435954 | MS.gene010437:CDS | 50.0% | |
| TGGATTCAGATCGGGTTACC+AGG | + | chr5.4:11439825-11439844 | MS.gene010437:CDS | 50.0% | |
| TTCGATGATGCAGAACACGG+CGG | - | chr5.4:11439718-11439737 | None:intergenic | 50.0% | |
| ! | CTGAGTGCAGGATGATTTGC+CGG | + | chr5.4:11435881-11435900 | MS.gene010437:intron | 50.0% |
| ! | TGCAATGCTGAGATTGGCCA+TGG | + | chr5.4:11437224-11437243 | MS.gene010437:CDS | 50.0% |
| !! | ACCTCACAAGCCGGTTTTGT+GGG | + | chr5.4:11437796-11437815 | MS.gene010437:intron | 50.0% |
| !! | CGGTTTTGTGGGGTTGTGTT+AGG | + | chr5.4:11437807-11437826 | MS.gene010437:intron | 50.0% |
| !! | GCATGGCATTGGAAGCATTG+TGG | - | chr5.4:11437284-11437303 | None:intergenic | 50.0% |
| ACCTCACCAGCCTATGGAGA+TGG | + | chr5.4:11439805-11439824 | MS.gene010437:CDS | 55.0% | |
| ACTCATGAAGGGATCCAGGC+CGG | - | chr5.4:11437945-11437964 | None:intergenic | 55.0% | |
| CAGATCCCGGCTAATTCAGC+TGG | + | chr5.4:11438498-11438517 | MS.gene010437:intron | 55.0% | |
| GAACAAACCGTCACCACCGT+AGG | + | chr5.4:11439101-11439120 | MS.gene010437:intron | 55.0% | |
| GCAATCCTCACCTCACAAGC+CGG | + | chr5.4:11437787-11437806 | MS.gene010437:intron | 55.0% | |
| GCAGATGGCAAGCATGGCAT+TGG | - | chr5.4:11437295-11437314 | None:intergenic | 55.0% | |
| GCCTGGATCCCTTCATGAGT+TGG | + | chr5.4:11437945-11437964 | MS.gene010437:intron | 55.0% | |
| GTGATGCTTCTCCCTGTAGC+AGG | - | chr5.4:11437540-11437559 | None:intergenic | 55.0% | |
| TAAGTTGCATGGGAGGGGTC+TGG | + | chr5.4:11437255-11437274 | MS.gene010437:CDS | 55.0% | |
| TCCATCTCCATAGGCTGGTG+AGG | - | chr5.4:11439809-11439828 | None:intergenic | 55.0% | |
| TGAGGCCAGCTGAATTAGCC+GGG | - | chr5.4:11438506-11438525 | None:intergenic | 55.0% | |
| TGCTGTCGAGCTCATGCGTT+GGG | - | chr5.4:11438569-11438588 | None:intergenic | 55.0% | |
| ! | ACTGGTTCTCCTCCTCGACA+TGG | + | chr5.4:11436474-11436493 | MS.gene010437:CDS | 55.0% |
| ! | GCCCATACTTAAGTACCGCC+TGG | - | chr5.4:11439846-11439865 | None:intergenic | 55.0% |
| ! | TGGCTGTCACTTCGCATCGA+CGG | - | chr5.4:11439297-11439316 | None:intergenic | 55.0% |
| !! | CAAAACCGGCTTGTGAGGTG+AGG | - | chr5.4:11437795-11437814 | None:intergenic | 55.0% |
| !! | CACCTCACAAGCCGGTTTTG+TGG | + | chr5.4:11437795-11437814 | MS.gene010437:intron | 55.0% |
| !! | CCTCACAAGCCGGTTTTGTG+GGG | + | chr5.4:11437797-11437816 | MS.gene010437:intron | 55.0% |
| CGGTGTCCTGCCCCTATACT+TGG | - | chr5.4:11439238-11439257 | None:intergenic | 60.0% | |
| GGTGGAAAGAGGTGGGGAGA+AGG | - | chr5.4:11436519-11436538 | None:intergenic | 60.0% | |
| GTGCTGTCGAGCTCATGCGT+TGG | - | chr5.4:11438570-11438589 | None:intergenic | 60.0% | |
| TCTCCCCACCTCTTTCCACC+AGG | + | chr5.4:11436519-11436538 | MS.gene010437:CDS | 60.0% | |
| ! | GGCTGTCACTTCGCATCGAC+GGG | - | chr5.4:11439296-11439315 | None:intergenic | 60.0% |
| !! | CCCCACAAAACCGGCTTGTG+AGG | - | chr5.4:11437800-11437819 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 11435658 | 11439915 | 11435658 | ID=MS.gene010437 |
| chr5.4 | mRNA | 11435658 | 11439915 | 11435658 | ID=MS.gene010437.t1;Parent=MS.gene010437 |
| chr5.4 | exon | 11435658 | 11435768 | 11435658 | ID=MS.gene010437.t1.exon1;Parent=MS.gene010437.t1 |
| chr5.4 | CDS | 11435658 | 11435768 | 11435658 | ID=cds.MS.gene010437.t1;Parent=MS.gene010437.t1 |
| chr5.4 | exon | 11435891 | 11435981 | 11435891 | ID=MS.gene010437.t1.exon2;Parent=MS.gene010437.t1 |
| chr5.4 | CDS | 11435891 | 11435981 | 11435891 | ID=cds.MS.gene010437.t1;Parent=MS.gene010437.t1 |
| chr5.4 | exon | 11436283 | 11436547 | 11436283 | ID=MS.gene010437.t1.exon3;Parent=MS.gene010437.t1 |
| chr5.4 | CDS | 11436283 | 11436547 | 11436283 | ID=cds.MS.gene010437.t1;Parent=MS.gene010437.t1 |
| chr5.4 | exon | 11437211 | 11437331 | 11437211 | ID=MS.gene010437.t1.exon4;Parent=MS.gene010437.t1 |
| chr5.4 | CDS | 11437211 | 11437331 | 11437211 | ID=cds.MS.gene010437.t1;Parent=MS.gene010437.t1 |
| chr5.4 | exon | 11437503 | 11437586 | 11437503 | ID=MS.gene010437.t1.exon5;Parent=MS.gene010437.t1 |
| chr5.4 | CDS | 11437503 | 11437586 | 11437503 | ID=cds.MS.gene010437.t1;Parent=MS.gene010437.t1 |
| chr5.4 | exon | 11438501 | 11438620 | 11438501 | ID=MS.gene010437.t1.exon6;Parent=MS.gene010437.t1 |
| chr5.4 | CDS | 11438501 | 11438620 | 11438501 | ID=cds.MS.gene010437.t1;Parent=MS.gene010437.t1 |
| chr5.4 | exon | 11438732 | 11438944 | 11438732 | ID=MS.gene010437.t1.exon7;Parent=MS.gene010437.t1 |
| chr5.4 | CDS | 11438732 | 11438944 | 11438732 | ID=cds.MS.gene010437.t1;Parent=MS.gene010437.t1 |
| chr5.4 | exon | 11439056 | 11439118 | 11439056 | ID=MS.gene010437.t1.exon8;Parent=MS.gene010437.t1 |
| chr5.4 | CDS | 11439056 | 11439118 | 11439056 | ID=cds.MS.gene010437.t1;Parent=MS.gene010437.t1 |
| chr5.4 | exon | 11439223 | 11439341 | 11439223 | ID=MS.gene010437.t1.exon9;Parent=MS.gene010437.t1 |
| chr5.4 | CDS | 11439223 | 11439341 | 11439223 | ID=cds.MS.gene010437.t1;Parent=MS.gene010437.t1 |
| chr5.4 | exon | 11439425 | 11439483 | 11439425 | ID=MS.gene010437.t1.exon10;Parent=MS.gene010437.t1 |
| chr5.4 | CDS | 11439425 | 11439483 | 11439425 | ID=cds.MS.gene010437.t1;Parent=MS.gene010437.t1 |
| chr5.4 | exon | 11439578 | 11439915 | 11439578 | ID=MS.gene010437.t1.exon11;Parent=MS.gene010437.t1 |
| chr5.4 | CDS | 11439578 | 11439915 | 11439578 | ID=cds.MS.gene010437.t1;Parent=MS.gene010437.t1 |
| Gene Sequence |
| Protein sequence |
