AlfalfaGEDB | MS.gene010447

M. sativa cultivar XinJiangDaYe / MS.gene010447

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF01476.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene010447.t1	XP_003611890.1	93.4	632	37	4	3	630	7	637	5.3e-310	1073.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene010447.t1	O64825	43.1	629	320	8	13	631	10	610	4.7e-125	449.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene010447.t1	G7KAT5	93.4	632	37	4	3	630	7	637	3.8e-310	1073.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene010447.t1	MTR_5g019050	92.071	618	45	3	17	630	20	637	0.0	1099
MS.gene010447.t1	MTR_5g085790	42.180	633	337	12	26	636	24	649	3.17e-149	447
MS.gene010447.t1	MTR_3g080170	41.967	610	324	16	43	631	41	641	3.37e-143	431
MS.gene010447.t1	MTR_1g021845	39.807	623	347	12	7	618	5	610	3.92e-141	425
MS.gene010447.t1	MTR_7g079350	32.540	630	375	17	12	614	22	628	9.05e-96	311
MS.gene010447.t1	MTR_7g079320	31.402	656	405	16	3	631	1	638	3.13e-94	305
MS.gene010447.t1	MTR_5g019040	32.201	618	316	18	49	631	37	586	1.24e-89	290
MS.gene010447.t1	MTR_5g042440	32.520	615	347	17	48	626	35	617	4.19e-86	282
MS.gene010447.t1	MTR_7g029650	32.201	618	369	20	49	620	26	639	5.96e-84	277
MS.gene010447.t1	MTR_4g058570	29.841	630	376	21	14	622	19	603	7.46e-72	243

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene010447.t1	AT2G23770	41.456	632	330	10	11	631	8	610	6.96e-166	488
MS.gene010447.t1	AT2G33580	40.120	668	341	17	9	637	12	659	3.08e-142	429
MS.gene010447.t1	AT3G21630	31.194	561	324	17	97	630	77	602	9.76e-67	230
MS.gene010447.t1	AT3G01840	27.840	625	345	20	48	620	47	617	5.91e-61	215
MS.gene010447.t1	AT1G51940	36.392	316	175	9	337	632	328	637	1.33e-52	192
MS.gene010447.t1	AT4G02010	30.734	436	248	15	210	615	241	652	3.80e-46	174
MS.gene010447.t1	AT2G05940	32.723	382	211	12	262	618	4	364	4.55e-46	170
MS.gene010447.t1	AT1G61860	31.818	352	194	12	284	618	37	359	5.96e-46	167
MS.gene010447.t1	AT3G07070	34.268	321	184	10	313	619	47	354	1.25e-45	167
MS.gene010447.t1	AT3G58690	34.783	299	173	8	335	618	72	363	5.82e-44	162

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Find 97 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTGTCTGAGATTATATG+TGG	0.643861	5.2:+24320843	MS.gene010447:CDS
AACATTCGAAACAAACAAAA+TGG	0.315890	5.2:+24320167	MS.gene010447:CDS
AAGAGAGTGAAAATGAAGAA+AGG	0.443177	5.2:-24319886	None:intergenic
AAGCAAAGGTTGCAAATTTA+AGG	0.146239	5.2:+24321312	MS.gene010447:CDS
AAGCTTGATGTGTATGCATT+TGG	0.462731	5.2:+24321452	MS.gene010447:CDS
AAGTGGTGATGAGAAGTTGA+AGG	0.524555	5.2:+24321577	MS.gene010447:CDS
AAGTGTATTAGCTTCAAGAG+TGG	0.640165	5.2:-24320505	None:intergenic
AATCCTGGTGATGTATATCC+TGG	0.541264	5.2:+24320339	MS.gene010447:CDS
ACAAACATAGCAAGTTCAAA+TGG	0.452941	5.2:-24321632	None:intergenic
ACCGGAAAGGCGAATAACAT+TGG	0.544674	5.2:-24321051	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAGAGTGAAAATGAAGAA+AGG	-	chr5.2:24319889-24319908	None:intergenic	30.0%
AAGCAAAGGTTGCAAATTTA+AGG	+	chr5.2:24321312-24321331	MS.gene010447:CDS	30.0%
ACAAACATAGCAAGTTCAAA+TGG	-	chr5.2:24321635-24321654	None:intergenic	30.0%
ACTTGGGTTTATGTTATTGT+TGG	+	chr5.2:24320672-24320691	MS.gene010447:CDS	30.0%
AGAGAGTGAAAATGAAGAAA+GGG	-	chr5.2:24319888-24319907	None:intergenic	30.0%
ATGCATGAAAATCATAATCC+TGG	+	chr5.2:24320324-24320343	MS.gene010447:CDS	30.0%
ATTATTACAGGAAAAGAGGT+TGG	+	chr5.2:24321491-24321510	MS.gene010447:CDS	30.0%
ATTGCATTAGATGTAGCAAT+AGG	+	chr5.2:24321203-24321222	MS.gene010447:CDS	30.0%
CATTGAATTCTTCATTCAGT+TGG	+	chr5.2:24321738-24321757	MS.gene010447:CDS	30.0%
CTAATGGAACATTAAGTGAT+TGG	+	chr5.2:24321120-24321139	MS.gene010447:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	24319877	24321790	24319877	ID=MS.gene010447
chr5.2	mRNA	24319877	24321790	24319877	ID=MS.gene010447.t1;Parent=MS.gene010447
chr5.2	exon	24319877	24321790	24319877	ID=MS.gene010447.t1.exon1;Parent=MS.gene010447.t1
chr5.2	CDS	24319877	24321790	24319877	ID=cds.MS.gene010447.t1;Parent=MS.gene010447.t1

Gene Sequence

>MS.gene010447

ATGCATCTCCCTTTCTTCATTTTCACTCTCTTCTTCTTATTCATCTTCATCAGCAACATCTCCATCATCCTAGGACAACAACCTTACATTGGTTTAGCAACGAATGCATGTCCACGAAAAGGCGATTCAAAATCAATCCGAGGTTACACATGTAACGGCGAAAGTCACAATTGCCAAGCATACCTCACCTTCAGAACTCAACCAATTTACTCCTCAATTTCAACAATATCTTCATTACTTGGCTCAAATCCATCTCAACTCGCCGAAATAAACTCCGTTTCTTTAAACGAAACATTCGAAACAAACAAAATGGTAATCGTTCCTGTCAATTGTTCTTGTTCTGGTAACTATTATCAAGCAAACACATCCTATGTTTTTCAAAACACAGACACTTATTTTATAGTTGCTAACAACACTTTTGAAGGTCTTTCAACATGTCAAGCTTTGATGCATGAAAATCATAATCCTGGTGATGTATATCCTGGTAGAAAACTACTTGTTCCTCTTAGATGTGCTTGTCCTACAAAGAATCAAACTGAGAAAAACATAAAGTATCTTTTGAGTTATTTGGTTGATTGGGGTGATTCTGTTTCATTCATTAGTGATAAATTTGGTGTTAACTTTAGAACCACTCTTGAAGCTAATACACTTTCTTTAACACAATCTATGATTTATCCTTTTACAACACTTCTTGTTCCTCTTTTTGATAAGCCTTCAAGTTCTCAAATTCAAACACATCATTCTCCTTCATCATCCCCACCTTCATCTTCTTCGACCGATAAAAAATCGAAAAAAACTTGGGTTTATGTTATTGTTGGAGTACTTGGAGGAGTTGTAATTGTAGTTTTTATATTAGTTCTATATGCTTTCATTTCCTTCAAAAAGGGTAAAAAGAAAAATGATTTTTTGAGTGTTTCTGAAAGTACTATTTTTGAGGAAAAAGAGAAGCCAGTGAAGGAAGATGAAAAATTGTCTGAGATTATATGTGGTATAGCTCAATCTTTCAAAGTGTATGATTTTGAGGAAATTAAGGTTGCAACTGATAATTTTAGTCCAAGCTGTCGGATTAAAGGAACTGTTTATCGCGCTGTTATAAAAGGCGATTTGGCTGCGATTAAGAAAACAGAAGGAGATGTTTCAAAAGAGATACAAATTCTTAACAAAGTTAATCATTCCAATGTTATTCGCCTTTCCGGTGTTAGCTTCAATGAAGGACATTGGTACCTTGTTTATGAGTATGCTGCTAATGGAACATTAAGTGATTGGTTATTTTCTAACAACAAAATGGATGATGGAAATTTTCTGAGTTGGATTCAGAGAATAAAGATTGCATTAGATGTAGCAATAGGAGTTGAATATCTTCATAGTTTCACTTCTCCTCCACATATTCATAAGGATCTAAAGTGTAGTAACATTCTTCTTGATAGTGATTTTAAAGCAAAGGTTGCAAATTTAAGGCATGTAAGGTGTGTGGAAGGAGTTGAAAATGATGAAGAATTTGTTGCTACAAGGCATATTGTTGGGACAAGAGGTTACATGGCACCAGAGTATTTGGAAAATGGTATTGTTTCTACAAAGCTTGATGTGTATGCATTTGGTGTGTTGATGTTGGAAATTATTACAGGAAAAGAGGTTGGTTTTATTTTATCAGAAGATAATGAGAATTTGTTGGATGTTTTGAGTGGAATACTTGGTGAGGAAAGTGGTGATGAGAAGTTGAAGGAAATTATGGATCCTTCATTGCAAGGAAATTATCCATTTGAACTTGCTATGTTTGTGATTGAAATTATTGAGAATTGTTTGAGTAAGGATCCAGCAAATCGTCCTGCTATGGATGAAATTGTGCCAGTTTTGTCAAGAACATTGAATTCTTCATTCAGTTGGGAAATGTCATTGAATGTTCCTAGAAACTAA

Protein sequence

>MS.gene010447.t1

MHLPFFIFTLFFLFIFISNISIILGQQPYIGLATNACPRKGDSKSIRGYTCNGESHNCQAYLTFRTQPIYSSISTISSLLGSNPSQLAEINSVSLNETFETNKMVIVPVNCSCSGNYYQANTSYVFQNTDTYFIVANNTFEGLSTCQALMHENHNPGDVYPGRKLLVPLRCACPTKNQTEKNIKYLLSYLVDWGDSVSFISDKFGVNFRTTLEANTLSLTQSMIYPFTTLLVPLFDKPSSSQIQTHHSPSSSPPSSSSTDKKSKKTWVYVIVGVLGGVVIVVFILVLYAFISFKKGKKKNDFLSVSESTIFEEKEKPVKEDEKLSEIICGIAQSFKVYDFEEIKVATDNFSPSCRIKGTVYRAVIKGDLAAIKKTEGDVSKEIQILNKVNHSNVIRLSGVSFNEGHWYLVYEYAANGTLSDWLFSNNKMDDGNFLSWIQRIKIALDVAIGVEYLHSFTSPPHIHKDLKCSNILLDSDFKAKVANLRHVRCVEGVENDEEFVATRHIVGTRGYMAPEYLENGIVSTKLDVYAFGVLMLEIITGKEVGFILSEDNENLLDVLSGILGEESGDEKLKEIMDPSLQGNYPFELAMFVIEIIENCLSKDPANRPAMDEIVPVLSRTLNSSFSWEMSLNVPRN