AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene010465

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010465.t1 MTR_5g019550 98.762 323 4 0 1 323 1 323 0.0 650
MS.gene010465.t1 MTR_5g019550 98.326 239 4 0 85 323 1 239 2.45e-170 472
MS.gene010465.t1 MTR_3g111680 54.242 330 119 8 2 323 8 313 1.63e-80 247
MS.gene010465.t1 MTR_1g021990 37.855 317 112 8 9 323 14 247 3.77e-49 164
MS.gene010465.t1 MTR_2g075410 43.305 351 133 12 6 322 3 321 1.53e-36 134
MS.gene010465.t1 MTR_2g075400 42.197 346 137 12 6 322 3 314 1.09e-32 127
MS.gene010465.t1 MTR_5g026210 60.714 56 22 0 20 75 61 116 1.90e-14 73.9
MS.gene010465.t1 MTR_5g026210 60.714 56 22 0 20 75 61 116 1.95e-14 74.3
MS.gene010465.t1 MTR_5g026210 60.714 56 22 0 20 75 61 116 2.16e-14 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010465.t1 AT1G75080 54.438 338 105 12 9 323 23 334 1.93e-93 281
MS.gene010465.t1 AT1G75080 54.438 338 105 12 9 323 23 334 1.93e-93 281
MS.gene010465.t1 AT1G19350 54.438 338 105 12 9 323 44 355 1.10e-91 277
MS.gene010465.t1 AT1G19350 54.438 338 105 12 9 323 22 333 1.24e-91 276
MS.gene010465.t1 AT1G19350 54.438 338 105 12 9 323 22 333 1.24e-91 276
MS.gene010465.t1 AT1G19350 54.438 338 105 12 9 323 22 333 1.24e-91 276
MS.gene010465.t1 AT1G19350 54.438 338 105 12 9 323 22 333 1.24e-91 276
MS.gene010465.t1 AT3G50750 51.863 322 95 8 2 319 4 269 1.31e-76 236
MS.gene010465.t1 AT4G36780 71.859 199 49 5 9 203 16 211 1.68e-61 197
MS.gene010465.t1 AT1G78700 41.193 352 135 13 6 319 3 320 1.51e-44 155
MS.gene010465.t1 AT4G18890 40.625 320 141 11 6 319 3 279 9.82e-33 123
MS.gene010465.t1 AT2G45880 38.686 137 75 3 3 136 63 193 7.28e-15 75.9
MS.gene010465.t1 AT5G45300 52.113 71 31 1 20 90 111 178 3.55e-14 73.6
MS.gene010465.t1 AT5G45300 52.113 71 31 1 20 90 97 164 3.65e-14 73.6
MS.gene010465.t1 AT5G45300 55.932 59 26 0 20 78 97 155 1.36e-13 72.0

Find 109 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGCTGCTAAGATCTATTC+AGG 0.302180 5.2:+10976237 MS.gene010465:CDS
TGGGGAGTGATCTGCATTGC+TGG 0.307829 5.2:-10977646 None:intergenic
GAAGAAAGAGGTGGCGTAAC+AGG 0.321873 5.2:-10977370 None:intergenic
GCATCTGACTCATCGCATTC+TGG 0.328895 5.2:-10977532 None:intergenic
GGAGTTCCTCCCATTTCATT+TGG 0.346161 5.2:-10977127 None:intergenic
GTGGCGAAACGTGGAGTTAA+AGG 0.352130 5.2:-10977443 None:intergenic
GAGACCATTACCAAATGAAA+TGG 0.372705 5.2:+10977117 MS.gene010465:CDS
TTGGAGCTTACTCTAGGGTT+TGG 0.376143 5.2:+10977823 MS.gene010465:CDS
TCATTATTATCACAGTGTTT+AGG 0.379828 5.2:-10976288 None:intergenic
GAACAAGCACTCATATTTGT+TGG 0.400165 5.2:-10977148 None:intergenic
CCTCCCATTTCATTTGGTAA+TGG 0.409966 5.2:-10977121 None:intergenic
AACGAAGAAGACTGTGGACT+TGG 0.429225 5.2:-10977205 None:intergenic
CTCTTTGTTCTGAAGCTGGT+TGG 0.433313 5.2:+10976322 MS.gene010465:CDS
CTAAGGGGTGGAAGATTTGT+TGG 0.437346 5.2:-10977331 None:intergenic
TTACGTCGCGAAGGGCTTGA+TGG 0.441756 5.2:-10977487 None:intergenic
ATGACCGGCGGTGGATCCTC+CGG 0.444774 5.2:+10976153 MS.gene010465:CDS
AAAGCTCTTTGTTCTGAAGC+TGG 0.450319 5.2:+10976318 MS.gene010465:CDS
GTTTCATAAGATTAAAAGTA+GGG 0.465742 5.2:-10977624 None:intergenic
GAGAATTCATGAGGTAGGAA+TGG 0.471286 5.2:+10977795 MS.gene010465:CDS
GAATGGTAGGAGAAAGGAAG+AGG 0.471644 5.2:-10977287 None:intergenic
CTCGTAGGGTATGATGGTAT+TGG 0.473170 5.2:-10977235 None:intergenic
TGGTGCAGAGGTAGCGAAAA+GGG 0.473562 5.2:-10977467 None:intergenic
GGTGAGAGAATTCATGAGGT+AGG 0.475725 5.2:+10977790 MS.gene010465:CDS
GGAAGGAGGAGCTGCACCAT+GGG 0.477201 5.2:-10977602 None:intergenic
CTCTTCGCCGGAACGATGAC+CGG 0.477263 5.2:+10976138 None:intergenic
CAACAAATCTTCCACCCCTT+AGG 0.481611 5.2:+10977332 MS.gene010465:CDS
TAAGGGGTGGAAGATTTGTT+GGG 0.482571 5.2:-10977330 None:intergenic
GAAGAGTTGGAGCTTACTCT+AGG 0.484349 5.2:+10977817 MS.gene010465:CDS
AATGAGGAAGATTGTGGACT+TGG 0.485039 5.2:-10977181 None:intergenic
GTATCATATCCATCGAACTC+TGG 0.485353 5.2:-10977666 None:intergenic
TATCATATCCATCGAACTCT+GGG 0.486116 5.2:-10977665 None:intergenic
CGCATTCTGGAATGGTGGAA+GGG 0.492428 5.2:-10977519 None:intergenic
CGATGAGTCAGATGCTTCTA+CGG 0.496132 5.2:+10977540 MS.gene010465:CDS
GCCGGAACGATGACCGGCGG+TGG 0.500980 5.2:+10976144 None:intergenic
GGGTATGATGGTATTGGACT+CGG 0.506930 5.2:-10977229 None:intergenic
TCAGCTACTGAGAGAGGTAG+AGG 0.507163 5.2:+10977721 MS.gene010465:CDS
GAGCACTGTTGGAAATCCTA+AGG 0.507516 5.2:-10977348 None:intergenic
GAACTTCTCGGAGAAGAAAG+AGG 0.507602 5.2:-10977382 None:intergenic
GTTAAAGGAAGCATTACAAA+GGG 0.511164 5.2:-10977428 None:intergenic
GAAGTTATGTTGCGGATGAA+TGG 0.514169 5.2:-10977304 None:intergenic
AGACCATTACCAAATGAAAT+GGG 0.515078 5.2:+10977118 MS.gene010465:CDS
AATGGTAGGAGAAAGGAAGA+GGG 0.515787 5.2:-10977286 None:intergenic
GAAGCCATGCAATGGAGTGC+AGG 0.519451 5.2:+10977697 MS.gene010465:CDS
TTTCCATGTTGGTAATCTCC+CGG 0.520653 5.2:-10976172 None:intergenic
CTTCTACGGTGGACTCTGGT+AGG 0.522842 5.2:+10977554 MS.gene010465:CDS
GCGGATGAATGGTAGGAGAA+AGG 0.522930 5.2:-10977293 None:intergenic
ATGGTGCAGAGGTAGCGAAA+AGG 0.528695 5.2:-10977468 None:intergenic
TGAGGTAGGAATGGAAGAGT+TGG 0.534793 5.2:+10977804 MS.gene010465:CDS
TGACCGGCGGTGGATCCTCC+GGG 0.535108 5.2:+10976154 MS.gene010465:CDS
GGTAAGTGGTTACGTCGCGA+AGG 0.535768 5.2:-10977496 None:intergenic
TGACTCATCGCATTCTGGAA+TGG 0.535852 5.2:-10977527 None:intergenic
GTTGGACTCGTAGGGTATGA+TGG 0.536021 5.2:-10977241 None:intergenic
TCGCATTCTGGAATGGTGGA+AGG 0.536086 5.2:-10977520 None:intergenic
GGTTGGATCGTTGAAGAAGA+TGG 0.537404 5.2:+10976339 MS.gene010465:CDS
AGACTGTGGACTTGGGAATG+AGG 0.539676 5.2:-10977197 None:intergenic
GCATTCTGGAATGGTGGAAG+GGG 0.540873 5.2:-10977518 None:intergenic
CTACGGTGGACTCTGGTAGG+TGG 0.546694 5.2:+10977557 MS.gene010465:CDS
ATAAGATTAAAAGTAGGGGA+AGG 0.548784 5.2:-10977619 None:intergenic
TGGCGTAACAGGAGCACTGT+TGG 0.550863 5.2:-10977359 None:intergenic
ACGAGTCCAACTCGCATGGA+TGG 0.553802 5.2:+10977253 MS.gene010465:CDS
ATGGCAGAGTCGTGAAGCCG+TGG 0.556658 5.2:+10977764 MS.gene010465:CDS
TACGGTGGACTCTGGTAGGT+GGG 0.563236 5.2:+10977558 MS.gene010465:CDS
GGTTTCATAAGATTAAAAGT+AGG 0.565689 5.2:-10977625 None:intergenic
AAGAGTTGGAGCTTACTCTA+GGG 0.569146 5.2:+10977818 MS.gene010465:CDS
GGGAAGGAGGAGCTGCACCA+TGG 0.569302 5.2:-10977603 None:intergenic
TATTCAGGTTTACGAGCTCA+AGG 0.569731 5.2:+10976252 MS.gene010465:CDS
TGAATTCTCTCACCTTCCCA+CGG 0.573723 5.2:-10977781 None:intergenic
GATCACTCCCCAGAGTTCGA+TGG 0.577805 5.2:+10977657 MS.gene010465:CDS
CCCTACGAGTCCAACTCGCA+TGG 0.578171 5.2:+10977249 MS.gene010465:CDS
TTATGTTGCGGATGAATGGT+AGG 0.578326 5.2:-10977300 None:intergenic
GATGCTTCTACGGTGGACTC+TGG 0.578522 5.2:+10977550 MS.gene010465:CDS
GTAAGTGGTTACGTCGCGAA+GGG 0.578993 5.2:-10977495 None:intergenic
AGAGTCGTGAAGCCGTGGGA+AGG 0.580925 5.2:+10977769 MS.gene010465:CDS
GTAATTCCATCCATGCGAGT+TGG 0.581360 5.2:-10977259 None:intergenic
ACGAAGAAGACTGTGGACTT+GGG 0.581874 5.2:-10977204 None:intergenic
CTCATCGCATTCTGGAATGG+TGG 0.583351 5.2:-10977524 None:intergenic
AGATTAAAAGTAGGGGAAGG+AGG 0.584415 5.2:-10977616 None:intergenic
AGCACTGTTGGAAATCCTAA+GGG 0.585276 5.2:-10977347 None:intergenic
CCTCCGGGAGATTACCAACA+TGG 0.594081 5.2:+10976169 MS.gene010465:CDS
GGTATGATGGTATTGGACTC+GGG 0.595404 5.2:-10977228 None:intergenic
TCCATGCGAGTTGGACTCGT+AGG 0.595405 5.2:-10977250 None:intergenic
TTTCAGACAACAACTGCCCA+TGG 0.605613 5.2:+10977586 MS.gene010465:CDS
GTATGAATGAAGCCATGCAA+TGG 0.607575 5.2:+10977689 MS.gene010465:CDS
TGAACCTGCACTCCATTGCA+TGG 0.609662 5.2:-10977701 None:intergenic
ATGGTAGGAGAAAGGAAGAG+GGG 0.614566 5.2:-10977285 None:intergenic
CCATGCGAGTTGGACTCGTA+GGG 0.617530 5.2:-10977249 None:intergenic
GTGCAGAGGTAGCGAAAAGG+GGG 0.619204 5.2:-10977465 None:intergenic
CTTGGGAATGAGGAAGATTG+TGG 0.619428 5.2:-10977187 None:intergenic
GCAGGTTCAGCTACTGAGAG+AGG 0.625141 5.2:+10977715 MS.gene010465:CDS
CATTCTGGAATGGTGGAAGG+GGG 0.627664 5.2:-10977517 None:intergenic
AGATGGTACTACTTATCGAA+AGG 0.630271 5.2:+10976356 MS.gene010465:CDS
TTGGGATTGAAGTTATGTTG+CGG 0.631769 5.2:-10977312 None:intergenic
AGTTAAAGGAAGCATTACAA+AGG 0.631880 5.2:-10977429 None:intergenic
GGTGCAGAGGTAGCGAAAAG+GGG 0.633761 5.2:-10977466 None:intergenic
CTGTTGGAAATCCTAAGGGG+TGG 0.634143 5.2:-10977343 None:intergenic
TGAGTCAGATGCTTCTACGG+TGG 0.636061 5.2:+10977543 MS.gene010465:CDS
CGAAGGGCTTGATGGTGCAG+AGG 0.637998 5.2:-10977479 None:intergenic
GCTTACTCTAGGGTTTGGAA+AGG 0.640157 5.2:+10977828 MS.gene010465:CDS
TTTCATAAGATTAAAAGTAG+GGG 0.644722 5.2:-10977623 None:intergenic
TCTCCCGGAGGATCCACCGC+CGG 0.650116 5.2:-10976157 None:intergenic
TGGCAGAGTCGTGAAGCCGT+GGG 0.659403 5.2:+10977765 MS.gene010465:CDS
TTCGCCGGAACGATGACCGG+CGG 0.661466 5.2:+10976141 None:intergenic
CTCGGGAACGAAGAAGACTG+TGG 0.666027 5.2:-10977211 None:intergenic
CCATTACCAAATGAAATGGG+AGG 0.683902 5.2:+10977121 MS.gene010465:CDS
GGAAGGTGAGAGAATTCATG+AGG 0.688457 5.2:+10977786 MS.gene010465:CDS
CCATGTTGGTAATCTCCCGG+AGG 0.694898 5.2:-10976169 None:intergenic
GCACTGTTGGAAATCCTAAG+GGG 0.712978 5.2:-10977346 None:intergenic
CTTCTCGGAGAAGAAAGAGG+TGG 0.713886 5.2:-10977379 None:intergenic
ATCATATCCATCGAACTCTG+GGG 0.720256 5.2:-10977664 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTTCATAAAATTGATT+CGG - chr5.2:10976683-10976702 None:intergenic 10.0%
!!! TTTTCCAATTTAATAGTTTA+TGG - chr5.2:10977003-10977022 None:intergenic 15.0%
!! AACACCATAAACTATTAAAT+TGG + chr5.2:10976996-10977015 MS.gene010465:intron 20.0%
!! ATTTAATAGTTTATGGTGTT+TGG - chr5.2:10976996-10977015 None:intergenic 20.0%
!! GTTTCATAAGATTAAAAGTA+GGG - chr5.2:10977627-10977646 None:intergenic 20.0%
!! TTTCATAAGATTAAAAGTAG+GGG - chr5.2:10977626-10977645 None:intergenic 20.0%
! AAGCAAGTTAGTTAAAAAAG+TGG - chr5.2:10976395-10976414 None:intergenic 25.0%
! AATCGAAGTTAAATCAATTC+TGG - chr5.2:10976584-10976603 None:intergenic 25.0%
! AATCGATCTTATAAGAAACT+TGG + chr5.2:10976477-10976496 MS.gene010465:intron 25.0%
! GAGTAAATGAATTTGAATCA+GGG + chr5.2:10977088-10977107 MS.gene010465:intron 25.0%
! GGTTTCATAAGATTAAAAGT+AGG - chr5.2:10977628-10977647 None:intergenic 25.0%
! TCATTATTATCACAGTGTTT+AGG - chr5.2:10976291-10976310 None:intergenic 25.0%
! TGAGTAAATGAATTTGAATC+AGG + chr5.2:10977087-10977106 MS.gene010465:intron 25.0%
!! AGAATTGATTTAACTTCGAT+TGG + chr5.2:10976583-10976602 MS.gene010465:intron 25.0%
AGACCATTACCAAATGAAAT+GGG + chr5.2:10977118-10977137 MS.gene010465:CDS 30.0%
ATAAGATTAAAAGTAGGGGA+AGG - chr5.2:10977622-10977641 None:intergenic 30.0%
CTGTTTAAGTCACATTAAGT+CGG + chr5.2:10976819-10976838 MS.gene010465:intron 30.0%
TTTAGTAGCTTATGTGTGTT+TGG - chr5.2:10976723-10976742 None:intergenic 30.0%
! TCGAAATCAATTTTTGTCAG+AGG + chr5.2:10976966-10976985 MS.gene010465:intron 30.0%
!! AGTTAAAGGAAGCATTACAA+AGG - chr5.2:10977432-10977451 None:intergenic 30.0%
!! GTTAAAGGAAGCATTACAAA+GGG - chr5.2:10977431-10977450 None:intergenic 30.0%
!!! TCAGATTTTGACTTTGAGAA+TGG + chr5.2:10977745-10977764 MS.gene010465:CDS 30.0%
AGATGGTACTACTTATCGAA+AGG + chr5.2:10976356-10976375 MS.gene010465:CDS 35.0%
ATTGCTGCTAAGATCTATTC+AGG + chr5.2:10976237-10976256 MS.gene010465:CDS 35.0%
GAACAAGCACTCATATTTGT+TGG - chr5.2:10977151-10977170 None:intergenic 35.0%
GAGACCATTACCAAATGAAA+TGG + chr5.2:10977117-10977136 MS.gene010465:CDS 35.0%
TATCATATCCATCGAACTCT+GGG - chr5.2:10977668-10977687 None:intergenic 35.0%
TTGGGATTGAAGTTATGTTG+CGG - chr5.2:10977315-10977334 None:intergenic 35.0%
! TTTTCTCTCTCTTTCCATGT+TGG - chr5.2:10976186-10976205 None:intergenic 35.0%
!! CTTGGTTTTTGTGATCTAAG+TGG + chr5.2:10976495-10976514 MS.gene010465:intron 35.0%
AAGAGTTGGAGCTTACTCTA+GGG + chr5.2:10977818-10977837 MS.gene010465:CDS 40.0%
AATGAGGAAGATTGTGGACT+TGG - chr5.2:10977184-10977203 None:intergenic 40.0%
AATGGTAGGAGAAAGGAAGA+GGG - chr5.2:10977289-10977308 None:intergenic 40.0%
AGATTAAAAGTAGGGGAAGG+AGG - chr5.2:10977619-10977638 None:intergenic 40.0%
AGCACTGTTGGAAATCCTAA+GGG - chr5.2:10977350-10977369 None:intergenic 40.0%
ATCATATCCATCGAACTCTG+GGG - chr5.2:10977667-10977686 None:intergenic 40.0%
CCATTACCAAATGAAATGGG+AGG + chr5.2:10977121-10977140 MS.gene010465:CDS 40.0%
CCTCCCATTTCATTTGGTAA+TGG - chr5.2:10977124-10977143 None:intergenic 40.0%
GAAGTTATGTTGCGGATGAA+TGG - chr5.2:10977307-10977326 None:intergenic 40.0%
GAGAATTCATGAGGTAGGAA+TGG + chr5.2:10977795-10977814 MS.gene010465:CDS 40.0%
GTATCATATCCATCGAACTC+TGG - chr5.2:10977669-10977688 None:intergenic 40.0%
GTATGAATGAAGCCATGCAA+TGG + chr5.2:10977689-10977708 MS.gene010465:CDS 40.0%
TTATGTTGCGGATGAATGGT+AGG - chr5.2:10977303-10977322 None:intergenic 40.0%
! TAAGGGGTGGAAGATTTGTT+GGG - chr5.2:10977333-10977352 None:intergenic 40.0%
! TATTCAGGTTTACGAGCTCA+AGG + chr5.2:10976252-10976271 MS.gene010465:CDS 40.0%
! TTCATGTGCGTTTAGTTCAG+CGG - chr5.2:10976874-10976893 None:intergenic 40.0%
!! AAAGCTCTTTGTTCTGAAGC+TGG + chr5.2:10976318-10976337 MS.gene010465:CDS 40.0%
!! GCTTTTCGCTTTGAACTTCT+CGG - chr5.2:10977397-10977416 None:intergenic 40.0%
!! TTTCCATGTTGGTAATCTCC+CGG - chr5.2:10976175-10976194 None:intergenic 40.0%
AACGAAGAAGACTGTGGACT+TGG - chr5.2:10977208-10977227 None:intergenic 45.0%
ACGAAGAAGACTGTGGACTT+GGG - chr5.2:10977207-10977226 None:intergenic 45.0%
ATGGTAGGAGAAAGGAAGAG+GGG - chr5.2:10977288-10977307 None:intergenic 45.0%
CAACAAATCTTCCACCCCTT+AGG + chr5.2:10977332-10977351 MS.gene010465:CDS 45.0%
CGATGAGTCAGATGCTTCTA+CGG + chr5.2:10977540-10977559 MS.gene010465:CDS 45.0%
CTAAGGGGTGGAAGATTTGT+TGG - chr5.2:10977334-10977353 None:intergenic 45.0%
CTCGTAGGGTATGATGGTAT+TGG - chr5.2:10977238-10977257 None:intergenic 45.0%
CTTGGGAATGAGGAAGATTG+TGG - chr5.2:10977190-10977209 None:intergenic 45.0%
GAACTTCTCGGAGAAGAAAG+AGG - chr5.2:10977385-10977404 None:intergenic 45.0%
GAAGAGTTGGAGCTTACTCT+AGG + chr5.2:10977817-10977836 MS.gene010465:CDS 45.0%
GAATGGTAGGAGAAAGGAAG+AGG - chr5.2:10977290-10977309 None:intergenic 45.0%
GCACTGTTGGAAATCCTAAG+GGG - chr5.2:10977349-10977368 None:intergenic 45.0%
GGAAGGTGAGAGAATTCATG+AGG + chr5.2:10977786-10977805 MS.gene010465:CDS 45.0%
GGAGTTCCTCCCATTTCATT+TGG - chr5.2:10977130-10977149 None:intergenic 45.0%
GGTGAGAGAATTCATGAGGT+AGG + chr5.2:10977790-10977809 MS.gene010465:CDS 45.0%
GGTTGGATCGTTGAAGAAGA+TGG + chr5.2:10976339-10976358 MS.gene010465:CDS 45.0%
GTAATTCCATCCATGCGAGT+TGG - chr5.2:10977262-10977281 None:intergenic 45.0%
TGAATTCTCTCACCTTCCCA+CGG - chr5.2:10977784-10977803 None:intergenic 45.0%
TGAGGTAGGAATGGAAGAGT+TGG + chr5.2:10977804-10977823 MS.gene010465:CDS 45.0%
TTTCAGACAACAACTGCCCA+TGG + chr5.2:10977586-10977605 MS.gene010465:CDS 45.0%
! GAGCACTGTTGGAAATCCTA+AGG - chr5.2:10977351-10977370 None:intergenic 45.0%
! GGGTATGATGGTATTGGACT+CGG - chr5.2:10977232-10977251 None:intergenic 45.0%
! GGTATGATGGTATTGGACTC+GGG - chr5.2:10977231-10977250 None:intergenic 45.0%
! TGACTCATCGCATTCTGGAA+TGG - chr5.2:10977530-10977549 None:intergenic 45.0%
!! CTCTTTGTTCTGAAGCTGGT+TGG + chr5.2:10976322-10976341 MS.gene010465:CDS 45.0%
!! GCTTACTCTAGGGTTTGGAA+AGG + chr5.2:10977828-10977847 MS.gene010465:CDS 45.0%
!! TTGGAGCTTACTCTAGGGTT+TGG + chr5.2:10977823-10977842 MS.gene010465:CDS 45.0%
AGACTGTGGACTTGGGAATG+AGG - chr5.2:10977200-10977219 None:intergenic 50.0%
ATGGTGCAGAGGTAGCGAAA+AGG - chr5.2:10977471-10977490 None:intergenic 50.0%
CTGTTGGAAATCCTAAGGGG+TGG - chr5.2:10977346-10977365 None:intergenic 50.0%
CTTCTCGGAGAAGAAAGAGG+TGG - chr5.2:10977382-10977401 None:intergenic 50.0%
GAAGAAAGAGGTGGCGTAAC+AGG - chr5.2:10977373-10977392 None:intergenic 50.0%
GCATCTGACTCATCGCATTC+TGG - chr5.2:10977535-10977554 None:intergenic 50.0%
GCGGATGAATGGTAGGAGAA+AGG - chr5.2:10977296-10977315 None:intergenic 50.0%
GTAAGTGGTTACGTCGCGAA+GGG - chr5.2:10977498-10977517 None:intergenic 50.0%
GTGGCGAAACGTGGAGTTAA+AGG - chr5.2:10977446-10977465 None:intergenic 50.0%
GTTGGACTCGTAGGGTATGA+TGG - chr5.2:10977244-10977263 None:intergenic 50.0%
TCAGCTACTGAGAGAGGTAG+AGG + chr5.2:10977721-10977740 MS.gene010465:CDS 50.0%
TGAACCTGCACTCCATTGCA+TGG - chr5.2:10977704-10977723 None:intergenic 50.0%
TGAGTCAGATGCTTCTACGG+TGG + chr5.2:10977543-10977562 MS.gene010465:CDS 50.0%
TGGTGCAGAGGTAGCGAAAA+GGG - chr5.2:10977470-10977489 None:intergenic 50.0%
!! CATTCTGGAATGGTGGAAGG+GGG - chr5.2:10977520-10977539 None:intergenic 50.0%
!! CGCATTCTGGAATGGTGGAA+GGG - chr5.2:10977522-10977541 None:intergenic 50.0%
!! CTCATCGCATTCTGGAATGG+TGG - chr5.2:10977527-10977546 None:intergenic 50.0%
!! GCATTCTGGAATGGTGGAAG+GGG - chr5.2:10977521-10977540 None:intergenic 50.0%
!! TCGCATTCTGGAATGGTGGA+AGG - chr5.2:10977523-10977542 None:intergenic 50.0%
ACGAGTCCAACTCGCATGGA+TGG + chr5.2:10977253-10977272 MS.gene010465:CDS 55.0%
CCTCCGGGAGATTACCAACA+TGG + chr5.2:10976169-10976188 MS.gene010465:CDS 55.0%
CTCGGGAACGAAGAAGACTG+TGG - chr5.2:10977214-10977233 None:intergenic 55.0%
GAAGCCATGCAATGGAGTGC+AGG + chr5.2:10977697-10977716 MS.gene010465:CDS 55.0%
GATCACTCCCCAGAGTTCGA+TGG + chr5.2:10977657-10977676 MS.gene010465:CDS 55.0%
GCAGGTTCAGCTACTGAGAG+AGG + chr5.2:10977715-10977734 MS.gene010465:CDS 55.0%
GGTAAGTGGTTACGTCGCGA+AGG - chr5.2:10977499-10977518 None:intergenic 55.0%
GGTGCAGAGGTAGCGAAAAG+GGG - chr5.2:10977469-10977488 None:intergenic 55.0%
GTGCAGAGGTAGCGAAAAGG+GGG - chr5.2:10977468-10977487 None:intergenic 55.0%
TGGGGAGTGATCTGCATTGC+TGG - chr5.2:10977649-10977668 None:intergenic 55.0%
TTACGTCGCGAAGGGCTTGA+TGG - chr5.2:10977490-10977509 None:intergenic 55.0%
! CCATGCGAGTTGGACTCGTA+GGG - chr5.2:10977252-10977271 None:intergenic 55.0%
! CTTCTACGGTGGACTCTGGT+AGG + chr5.2:10977554-10977573 MS.gene010465:CDS 55.0%
! GAATGGTGGAAGGGGGTAAG+TGG - chr5.2:10977513-10977532 None:intergenic 55.0%
! GATGCTTCTACGGTGGACTC+TGG + chr5.2:10977550-10977569 MS.gene010465:CDS 55.0%
! TACGGTGGACTCTGGTAGGT+GGG + chr5.2:10977558-10977577 MS.gene010465:CDS 55.0%
! TCCATGCGAGTTGGACTCGT+AGG - chr5.2:10977253-10977272 None:intergenic 55.0%
!! CCATGTTGGTAATCTCCCGG+AGG - chr5.2:10976172-10976191 None:intergenic 55.0%
!! TGGCGTAACAGGAGCACTGT+TGG - chr5.2:10977362-10977381 None:intergenic 55.0%
AGAGTCGTGAAGCCGTGGGA+AGG + chr5.2:10977769-10977788 MS.gene010465:CDS 60.0%
ATGGCAGAGTCGTGAAGCCG+TGG + chr5.2:10977764-10977783 MS.gene010465:CDS 60.0%
CAGAGGTAGCGAAAAGGGGG+TGG - chr5.2:10977465-10977484 None:intergenic 60.0%
CCCTACGAGTCCAACTCGCA+TGG + chr5.2:10977249-10977268 MS.gene010465:CDS 60.0%
GAAAAGGGGGTGGCGAAACG+TGG - chr5.2:10977455-10977474 None:intergenic 60.0%
GGAAGGAGGAGCTGCACCAT+GGG - chr5.2:10977605-10977624 None:intergenic 60.0%
TGGCAGAGTCGTGAAGCCGT+GGG + chr5.2:10977765-10977784 MS.gene010465:CDS 60.0%
! CTACGGTGGACTCTGGTAGG+TGG + chr5.2:10977557-10977576 MS.gene010465:CDS 60.0%
!! CGAAGGGCTTGATGGTGCAG+AGG - chr5.2:10977482-10977501 None:intergenic 60.0%
ATGACCGGCGGTGGATCCTC+CGG + chr5.2:10976153-10976172 MS.gene010465:CDS 65.0%
GGGAAGGAGGAGCTGCACCA+TGG - chr5.2:10977606-10977625 None:intergenic 65.0%
TCTCCCGGAGGATCCACCGC+CGG - chr5.2:10976160-10976179 None:intergenic 70.0%
TGACCGGCGGTGGATCCTCC+GGG + chr5.2:10976154-10976173 MS.gene010465:CDS 70.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 10976153 10977855 10976153 ID=MS.gene010465
chr5.2 mRNA 10976153 10977855 10976153 ID=MS.gene010465.t1;Parent=MS.gene010465
chr5.2 exon 10976153 10976377 10976153 ID=MS.gene010465.t1.exon1;Parent=MS.gene010465.t1
chr5.2 CDS 10976153 10976377 10976153 ID=cds.MS.gene010465.t1;Parent=MS.gene010465.t1
chr5.2 exon 10977109 10977855 10977109 ID=MS.gene010465.t1.exon2;Parent=MS.gene010465.t1
chr5.2 CDS 10977109 10977855 10977109 ID=cds.MS.gene010465.t1;Parent=MS.gene010465.t1
Gene Sequence

>MS.gene010465

ATGACCGGCGGTGGATCCTCCGGGAGATTACCAACATGGAAAGAGAGAGAAAACAACAAAAGAAGAGAGAGAAGAAGAAGAGCTATTGCTGCTAAGATCTATTCAGGTTTACGAGCTCAAGGTAATTTTAAGCTTCCTAAACACTGTGATAATAATGAAGTCTTGAAAGCTCTTTGTTCTGAAGCTGGTTGGATCGTTGAAGAAGATGGTACTACTTATCGAAAGGTTCAGATCTCGTTCCACTTTTTTAACTAACTTGCTTTTTATCTTGATCTGCTTCAATTTCACTCAATTCTTGTTCTGTTAATTGAAATTGAACTTTTAAATCGATCTTATAAGAAACTTGGTTTTTGTGATCTAAGTGGTGAAGCTGATTTCTGCATGATATAGTGTATTTTTTGTTCTAACTTTGAATAGTGATTTTGTCTCCAGAATTGATTTAACTTCGATTGGAAGTTAAATCATATTTATTGTTCAACATATTTTTACATTGAATGTATGTCAACATAAATTAACTTACATTTAGTCCGAATCAATTTTATGAAATTAATTTTTCTAGATGTTGAACCAAACACACATAAGCTACTAAATTGAAAAAGATTAATGATGCGTCGAAGAATTGTTTTGAGTCATTTTACGTGAATGTATACAGACACGAGTCGTTTTCTGTTTAAGTCACATTAAGTCGGAATCAATTTTACAAACTCAAATTTTCTTACCGCTGAACTAAACGCACATGAACTACTACATTGAAATGAGTTAATATTGTGTTAAAGACTTGTTGAAGTCATTTTATGTTTAAGTTGTATTTAGTCGAAATCAATTTTTGTCAGAGGTGAACCAAACACCATAAACTATTAAATTGGAAAAAATTAATAATGAGTTGAAGAATTGTTGATATAAAGTATGATTTTGATTGTTGCATAGACTAATATGAGTAAATGAATTTGAATCAGGGAAGTAAGAGACCATTACCAAATGAAATGGGAGGAACTCCAACAAATATGAGTGCTTGTTCTTCAATGCAACCAAGTCCACAATCTTCCTCATTCCCAAGTCCACAGTCTTCTTCGTTCCCGAGTCCAATACCATCATACCCTACGAGTCCAACTCGCATGGATGGAATTACAAACCCCTCTTCCTTTCTCCTACCATTCATCCGCAACATAACTTCAATCCCAACAAATCTTCCACCCCTTAGGATTTCCAACAGTGCTCCTGTTACGCCACCTCTTTCTTCTCCGAGAAGTTCAAAGCGAAAAGCAGATTTTGAATCCCTTTGTAATGCTTCCTTTAACTCCACGTTTCGCCACCCCCTTTTCGCTACCTCTGCACCATCAAGCCCTTCGCGACGTAACCACTTACCCCCTTCCACCATTCCAGAATGCGATGAGTCAGATGCTTCTACGGTGGACTCTGGTAGGTGGGTTAGTTTTCAGACAACAACTGCCCATGGTGCAGCTCCTCCTTCCCCTACTTTTAATCTTATGAAACCAGCAATGCAGATCACTCCCCAGAGTTCGATGGATATGATACGTATGAATGAAGCCATGCAATGGAGTGCAGGTTCAGCTACTGAGAGAGGTAGAGGCTCAGATTTTGACTTTGAGAATGGCAGAGTCGTGAAGCCGTGGGAAGGTGAGAGAATTCATGAGGTAGGAATGGAAGAGTTGGAGCTTACTCTAGGGTTTGGAAAGGCCTGA
Protein sequence

>MS.gene010465.t1

MTGGGSSGRLPTWKERENNKRRERRRRAIAAKIYSGLRAQGNFKLPKHCDNNEVLKALCSEAGWIVEEDGTTYRKGSKRPLPNEMGGTPTNMSACSSMQPSPQSSSFPSPQSSSFPSPIPSYPTSPTRMDGITNPSSFLLPFIRNITSIPTNLPPLRISNSAPVTPPLSSPRSSKRKADFESLCNASFNSTFRHPLFATSAPSSPSRRNHLPPSTIPECDESDASTVDSGRWVSFQTTTAHGAAPPSPTFNLMKPAMQITPQSSMDMIRMNEAMQWSAGSATERGRGSDFDFENGRVVKPWEGERIHEVGMEELELTLGFGKA