Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010569.t1 | XP_003612086.1 | 77.5 | 329 | 55 | 5 | 1 | 316 | 1 | 323 | 4.10E-113 | 417.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010569.t1 | Q9XGX0 | 44.5 | 274 | 103 | 9 | 68 | 316 | 82 | 331 | 6.3e-46 | 186.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010569.t1 | G7KGA2 | 77.5 | 329 | 55 | 5 | 1 | 316 | 1 | 323 | 3.0e-113 | 417.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene010569.t1 | TF | SRS |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010569.t1 | MTR_5g021130 | 88.146 | 329 | 20 | 6 | 1 | 316 | 1 | 323 | 0.0 | 529 |
| MS.gene010569.t1 | MTR_8g076620 | 54.335 | 346 | 113 | 12 | 1 | 316 | 1 | 331 | 9.14e-94 | 281 |
| MS.gene010569.t1 | MTR_3g112510 | 42.901 | 324 | 136 | 14 | 1 | 311 | 1 | 288 | 1.37e-62 | 200 |
| MS.gene010569.t1 | MTR_5g089750 | 50.314 | 159 | 55 | 4 | 103 | 243 | 249 | 401 | 3.68e-39 | 144 |
| MS.gene010569.t1 | MTR_4g071110 | 45.890 | 146 | 59 | 1 | 100 | 245 | 14 | 139 | 1.80e-38 | 137 |
| MS.gene010569.t1 | MTR_3g014660 | 43.750 | 160 | 74 | 3 | 103 | 248 | 134 | 291 | 3.10e-38 | 138 |
| MS.gene010569.t1 | MTR_8g039110 | 42.857 | 168 | 76 | 3 | 103 | 251 | 124 | 290 | 4.18e-34 | 127 |
| MS.gene010569.t1 | MTR_1g023230 | 55.556 | 117 | 33 | 4 | 101 | 205 | 120 | 229 | 8.30e-28 | 108 |
| MS.gene010569.t1 | MTR_0363s0040 | 77.778 | 45 | 10 | 0 | 103 | 147 | 124 | 168 | 6.69e-21 | 90.1 |
| MS.gene010569.t1 | MTR_0105s0070 | 63.636 | 33 | 12 | 0 | 105 | 137 | 44 | 76 | 1.10e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010569.t1 | AT3G51060 | 42.894 | 387 | 133 | 13 | 1 | 316 | 1 | 370 | 2.52e-75 | 236 |
| MS.gene010569.t1 | AT5G66350 | 47.011 | 368 | 106 | 20 | 1 | 316 | 1 | 331 | 5.63e-72 | 226 |
| MS.gene010569.t1 | AT5G66350 | 47.042 | 355 | 101 | 19 | 1 | 303 | 1 | 320 | 2.58e-69 | 219 |
| MS.gene010569.t1 | AT5G66350 | 47.042 | 355 | 101 | 19 | 1 | 303 | 1 | 320 | 3.79e-69 | 218 |
| MS.gene010569.t1 | AT1G19790 | 40.710 | 366 | 144 | 14 | 1 | 315 | 1 | 344 | 1.72e-65 | 209 |
| MS.gene010569.t1 | AT1G19790 | 40.710 | 366 | 144 | 14 | 1 | 315 | 1 | 344 | 1.72e-65 | 209 |
| MS.gene010569.t1 | AT1G75520 | 50.813 | 246 | 85 | 9 | 93 | 316 | 115 | 346 | 2.68e-65 | 209 |
| MS.gene010569.t1 | AT4G36260 | 38.393 | 336 | 168 | 13 | 1 | 314 | 1 | 319 | 5.41e-49 | 166 |
| MS.gene010569.t1 | AT2G18120 | 41.667 | 252 | 89 | 8 | 1 | 245 | 6 | 206 | 1.38e-47 | 159 |
| MS.gene010569.t1 | AT2G18120 | 41.036 | 251 | 90 | 8 | 1 | 245 | 6 | 204 | 1.25e-45 | 154 |
| MS.gene010569.t1 | AT2G21400 | 52.055 | 146 | 55 | 3 | 100 | 243 | 7 | 139 | 2.84e-44 | 150 |
| MS.gene010569.t1 | AT2G21400 | 52.055 | 146 | 55 | 3 | 100 | 243 | 6 | 138 | 3.17e-44 | 150 |
| MS.gene010569.t1 | AT2G21400 | 50.676 | 148 | 39 | 3 | 100 | 243 | 7 | 124 | 2.01e-43 | 147 |
| MS.gene010569.t1 | AT2G21400 | 50.676 | 148 | 39 | 3 | 100 | 243 | 6 | 123 | 2.41e-43 | 147 |
| MS.gene010569.t1 | AT5G12330 | 45.570 | 158 | 69 | 2 | 103 | 243 | 112 | 269 | 5.36e-37 | 135 |
| MS.gene010569.t1 | AT5G12330 | 45.570 | 158 | 69 | 2 | 103 | 243 | 112 | 269 | 5.36e-37 | 135 |
| MS.gene010569.t1 | AT5G12330 | 45.570 | 158 | 69 | 2 | 103 | 243 | 199 | 356 | 1.05e-36 | 136 |
| MS.gene010569.t1 | AT5G33210 | 60.920 | 87 | 26 | 1 | 101 | 179 | 15 | 101 | 7.16e-29 | 107 |
| MS.gene010569.t1 | AT5G33210 | 60.920 | 87 | 26 | 1 | 101 | 179 | 50 | 136 | 2.42e-28 | 108 |
| MS.gene010569.t1 | AT3G54430 | 39.597 | 149 | 77 | 4 | 99 | 246 | 37 | 173 | 2.03e-27 | 105 |
| MS.gene010569.t1 | AT5G12330 | 86.957 | 46 | 6 | 0 | 103 | 148 | 112 | 157 | 6.83e-23 | 95.1 |
Find 75 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAGAAGAGATAAGGTTTA+AGG | 0.199519 | 5.1:-12391675 | None:intergenic |
| CCATGTTGTTGAGATGATTT+AGG | 0.214641 | 5.1:-12390735 | None:intergenic |
| TACTCCTCTGGTGTTGTGTT+AGG | 0.305453 | 5.1:+12390477 | MS.gene010569:CDS |
| ATAATCCAACAACAGAATTC+TGG | 0.358326 | 5.1:+12390325 | MS.gene010569:CDS |
| ACTAGAATTAGAGGCGTTTC+CGG | 0.373528 | 5.1:-12391624 | None:intergenic |
| TCCCTGATGCTACTGCTGTT+GGG | 0.375712 | 5.1:+12391696 | MS.gene010569:CDS |
| AATAGATCTACTGTGTTTGT+AGG | 0.376062 | 5.1:+12390534 | MS.gene010569:CDS |
| TGGGAATAATAGTTACAATA+TGG | 0.377378 | 5.1:+12391598 | MS.gene010569:CDS |
| AGAGTGAGTGAAGGGTTTGT+AGG | 0.387801 | 5.1:-12390807 | None:intergenic |
| TTATACCAGAATTCTGTTGT+TGG | 0.398181 | 5.1:-12390330 | None:intergenic |
| TAACTATTATTCCCATGATC+TGG | 0.405584 | 5.1:-12391590 | None:intergenic |
| TGAATTCTCCAGCAGAGTTC+AGG | 0.409422 | 5.1:+12391462 | MS.gene010569:CDS |
| TATGATTATGGTCCAGATCA+TGG | 0.413474 | 5.1:+12391578 | MS.gene010569:CDS |
| TGAATGATGAATCAAGATCT+TGG | 0.413551 | 5.1:-12391800 | None:intergenic |
| CTTTCTCTTCTTCTAGCAGC+AGG | 0.421698 | 5.1:-12390690 | None:intergenic |
| GTCCCTGATGCTACTGCTGT+TGG | 0.422352 | 5.1:+12391695 | MS.gene010569:CDS |
| AAACTCATGTTAAGAGTACT+TGG | 0.425175 | 5.1:+12390664 | MS.gene010569:CDS |
| ACAGAAGAGATAAGGTTTAA+GGG | 0.430955 | 5.1:-12391674 | None:intergenic |
| TCCCCAACAGCAGTAGCATC+AGG | 0.439192 | 5.1:-12391698 | None:intergenic |
| TGTTAGGAGTGGGACCTACT+AGG | 0.445348 | 5.1:+12390493 | MS.gene010569:CDS |
| GAGTGTACCACTAGAATTAG+AGG | 0.455284 | 5.1:-12391633 | None:intergenic |
| GCTGGAGAATTCACCACAGC+TGG | 0.457156 | 5.1:-12391452 | None:intergenic |
| GGTATAAGTTGTCAAGATTG+TGG | 0.462555 | 5.1:+12390570 | MS.gene010569:CDS |
| TGGAATAGTAGTAGTATGGC+TGG | 0.464468 | 5.1:+12390258 | None:intergenic |
| CAACAAGATCTTTACTCCTC+TGG | 0.470648 | 5.1:+12390465 | MS.gene010569:CDS |
| AAGAATTGCGTACCACTAGA+AGG | 0.471301 | 5.1:-12391770 | None:intergenic |
| TCTAGTGGTACACTCCTTGA+AGG | 0.471939 | 5.1:+12391641 | MS.gene010569:CDS |
| TCTACTGTGTTTGTAGGAAG+TGG | 0.474128 | 5.1:+12390540 | MS.gene010569:CDS |
| GAATGATGAATCAAGATCTT+GGG | 0.474567 | 5.1:-12391799 | None:intergenic |
| TTGTTGGATTATTATTCTGT+TGG | 0.477389 | 5.1:-12390314 | None:intergenic |
| AAAACAAGTGTTGTTGATGT+TGG | 0.482819 | 5.1:-12390407 | None:intergenic |
| CCCTGATGCTACTGCTGTTG+GGG | 0.488129 | 5.1:+12391697 | MS.gene010569:CDS |
| CTCACGCACCTGAACTCTGC+TGG | 0.492218 | 5.1:-12391470 | None:intergenic |
| GTTAGGAGTGGGACCTACTA+GGG | 0.499651 | 5.1:+12390494 | MS.gene010569:CDS |
| AGGGCTGAGCCACCCCTTCA+AGG | 0.501243 | 5.1:-12391655 | None:intergenic |
| CATCAGGGACAGAAGAGATA+AGG | 0.508932 | 5.1:-12391682 | None:intergenic |
| TCAGAAGAACAAACCCTAGT+AGG | 0.513659 | 5.1:-12390507 | None:intergenic |
| TCACTCACTCTCCCTTCAGC+AGG | 0.521572 | 5.1:+12390819 | MS.gene010569:CDS |
| GTATAAGTTGTCAAGATTGT+GGG | 0.521679 | 5.1:+12390571 | MS.gene010569:CDS |
| CTCTGGTGTTGTGTTAGGAG+TGG | 0.527736 | 5.1:+12390482 | MS.gene010569:CDS |
| TAAACGAGTGCAAGCTAAAG+AGG | 0.530926 | 5.1:-12390784 | None:intergenic |
| TCTGGTGTTGTGTTAGGAGT+GGG | 0.532211 | 5.1:+12390483 | MS.gene010569:CDS |
| CTAGTGGTACACTCCTTGAA+GGG | 0.532650 | 5.1:+12391642 | MS.gene010569:CDS |
| ATGAAGGAATTAAGTGGAGC+TGG | 0.538890 | 5.1:-12391746 | None:intergenic |
| AGAACTTGTTGTAAAAGTAG+AGG | 0.550532 | 5.1:+12390630 | MS.gene010569:CDS |
| AATAGTTACAATATGGCTAC+CGG | 0.553111 | 5.1:+12391605 | MS.gene010569:CDS |
| GGAGCTGGATACAAAGAAGA+AGG | 0.554978 | 5.1:-12391731 | None:intergenic |
| TCAACAGCTGTAAACATTGG+AGG | 0.560848 | 5.1:+12391533 | MS.gene010569:CDS |
| CAAGTTCTACATCTCATATG+AGG | 0.561087 | 5.1:-12390615 | None:intergenic |
| GAAGGCATGAAGGAATTAAG+TGG | 0.562752 | 5.1:-12391752 | None:intergenic |
| ATGATTATGGTCCAGATCAT+GGG | 0.563960 | 5.1:+12391579 | MS.gene010569:CDS |
| GTTGTTTCTAATTCATACCG+TGG | 0.564425 | 5.1:+12390369 | MS.gene010569:CDS |
| GTGTTTGTAGGAAGTGGAAG+TGG | 0.568208 | 5.1:+12390546 | MS.gene010569:CDS |
| ATGAATCAAGATCTTGGGTG+GGG | 0.569684 | 5.1:-12391794 | None:intergenic |
| AATTCCTTCATGCCTTCTAG+TGG | 0.576741 | 5.1:+12391758 | MS.gene010569:CDS |
| TGGTACACTCCTTGAAGGGG+TGG | 0.576962 | 5.1:+12391646 | MS.gene010569:CDS |
| ATATATAATATACCTGCTGA+AGG | 0.587423 | 5.1:-12390831 | None:intergenic |
| TGATGAATCAAGATCTTGGG+TGG | 0.587902 | 5.1:-12391796 | None:intergenic |
| TATTCAACAGCTGTAAACAT+TGG | 0.588034 | 5.1:+12391530 | MS.gene010569:CDS |
| CTGAAGGGAGAGTGAGTGAA+GGG | 0.593490 | 5.1:-12390815 | None:intergenic |
| CCTAAATCATCTCAACAACA+TGG | 0.595265 | 5.1:+12390735 | MS.gene010569:CDS |
| CAACAGCTGTAAACATTGGA+GGG | 0.602052 | 5.1:+12391534 | MS.gene010569:CDS |
| GATGAATCAAGATCTTGGGT+GGG | 0.609126 | 5.1:-12391795 | None:intergenic |
| CCCCAACAGCAGTAGCATCA+GGG | 0.616436 | 5.1:-12391697 | None:intergenic |
| CTCAGTTGATGAGAACGAAG+AGG | 0.617435 | 5.1:+12391499 | MS.gene010569:CDS |
| CGTACCACTAGAAGGCATGA+AGG | 0.617919 | 5.1:-12391762 | None:intergenic |
| AACTCATGTTAAGAGTACTT+GGG | 0.622414 | 5.1:+12390665 | MS.gene010569:CDS |
| TGAATCAAGATCTTGGGTGG+GGG | 0.629021 | 5.1:-12391793 | None:intergenic |
| TATATAATATACCTGCTGAA+GGG | 0.636400 | 5.1:-12390830 | None:intergenic |
| TAGTGGTACACTCCTTGAAG+GGG | 0.649565 | 5.1:+12391643 | MS.gene010569:CDS |
| GCTGAAGGGAGAGTGAGTGA+AGG | 0.652710 | 5.1:-12390816 | None:intergenic |
| CACTCCTAACACAACACCAG+AGG | 0.667381 | 5.1:-12390481 | None:intergenic |
| TTTGTAGGAAGTGGAAGTGG+AGG | 0.673100 | 5.1:+12390549 | MS.gene010569:CDS |
| GGAAACGCCTCTAATTCTAG+TGG | 0.698556 | 5.1:+12391626 | MS.gene010569:CDS |
| GGTTCCAAATCTCAAAACCA+CGG | 0.709690 | 5.1:-12390386 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTTAATTATCATAAAAAAA+GGG | + | chr5.1:12391408-12391427 | MS.gene010569:intron | 10.0% |
| !! | TTGTTAATTATCATAAAAAA+AGG | + | chr5.1:12391407-12391426 | MS.gene010569:intron | 10.0% |
| !! | TAAATATGTATATATCATCA+TGG | - | chr5.1:12391352-12391371 | None:intergenic | 15.0% |
| !! | AAACAAACAAACTATAAGTT+AGG | - | chr5.1:12391375-12391394 | None:intergenic | 20.0% |
| ! | ATATATAATATACCTGCTGA+AGG | - | chr5.1:12390834-12390853 | None:intergenic | 25.0% |
| ! | GACATATATGAACAAAGAAA+AGG | - | chr5.1:12391187-12391206 | None:intergenic | 25.0% |
| ! | TATATAATATACCTGCTGAA+GGG | - | chr5.1:12390833-12390852 | None:intergenic | 25.0% |
| ! | TGGGAATAATAGTTACAATA+TGG | + | chr5.1:12391598-12391617 | MS.gene010569:CDS | 25.0% |
| ! | TTGTTGGATTATTATTCTGT+TGG | - | chr5.1:12390317-12390336 | None:intergenic | 25.0% |
| !! | AGAGGAATTTTGTATGATTA+TGG | + | chr5.1:12391566-12391585 | MS.gene010569:CDS | 25.0% |
| AATAGATCTACTGTGTTTGT+AGG | + | chr5.1:12390534-12390553 | MS.gene010569:CDS | 30.0% | |
| AATAGTTACAATATGGCTAC+CGG | + | chr5.1:12391605-12391624 | MS.gene010569:CDS | 30.0% | |
| ACAGAAGAGATAAGGTTTAA+GGG | - | chr5.1:12391677-12391696 | None:intergenic | 30.0% | |
| ATAATCCAACAACAGAATTC+TGG | + | chr5.1:12390325-12390344 | MS.gene010569:CDS | 30.0% | |
| ATTCTCTTCCAAAACTTTCT+CGG | - | chr5.1:12390972-12390991 | None:intergenic | 30.0% | |
| CATAAAAAAAGGGCTATTAG+AGG | + | chr5.1:12391418-12391437 | MS.gene010569:intron | 30.0% | |
| CATTGAATAACTCATGTATC+TGG | - | chr5.1:12391257-12391276 | None:intergenic | 30.0% | |
| GTATAAGTTGTCAAGATTGT+GGG | + | chr5.1:12390571-12390590 | MS.gene010569:CDS | 30.0% | |
| TAACTATTATTCCCATGATC+TGG | - | chr5.1:12391593-12391612 | None:intergenic | 30.0% | |
| TATTCAACAGCTGTAAACAT+TGG | + | chr5.1:12391530-12391549 | MS.gene010569:CDS | 30.0% | |
| TTATACCAGAATTCTGTTGT+TGG | - | chr5.1:12390333-12390352 | None:intergenic | 30.0% | |
| ! | AAAACAAGTGTTGTTGATGT+TGG | - | chr5.1:12390410-12390429 | None:intergenic | 30.0% |
| ! | CTTCTGAAAAAGATAAGTGA+AGG | + | chr5.1:12390944-12390963 | MS.gene010569:intron | 30.0% |
| !! | AAACTCATGTTAAGAGTACT+TGG | + | chr5.1:12390664-12390683 | MS.gene010569:CDS | 30.0% |
| !! | AACTCATGTTAAGAGTACTT+GGG | + | chr5.1:12390665-12390684 | MS.gene010569:CDS | 30.0% |
| !! | AGAACTTGTTGTAAAAGTAG+AGG | + | chr5.1:12390630-12390649 | MS.gene010569:CDS | 30.0% |
| !!! | ATGGCTGGTTTATTTTCATT+AGG | + | chr5.1:12390273-12390292 | MS.gene010569:CDS | 30.0% |
| AATGAATGGGATCAATGACA+GGG | + | chr5.1:12391060-12391079 | MS.gene010569:intron | 35.0% | |
| ATGATTATGGTCCAGATCAT+GGG | + | chr5.1:12391579-12391598 | MS.gene010569:CDS | 35.0% | |
| CAAGTTCTACATCTCATATG+AGG | - | chr5.1:12390618-12390637 | None:intergenic | 35.0% | |
| CCATGTTGTTGAGATGATTT+AGG | - | chr5.1:12390738-12390757 | None:intergenic | 35.0% | |
| CCTAAATCATCTCAACAACA+TGG | + | chr5.1:12390735-12390754 | MS.gene010569:CDS | 35.0% | |
| GACAGAAGAGATAAGGTTTA+AGG | - | chr5.1:12391678-12391697 | None:intergenic | 35.0% | |
| GGTATAAGTTGTCAAGATTG+TGG | + | chr5.1:12390570-12390589 | MS.gene010569:CDS | 35.0% | |
| TATGATTATGGTCCAGATCA+TGG | + | chr5.1:12391578-12391597 | MS.gene010569:CDS | 35.0% | |
| TGTTGTTCTGACGAATGAAT+GGG | + | chr5.1:12391047-12391066 | MS.gene010569:intron | 35.0% | |
| !! | AAAGTAGTGTTGTTGGTTTG+TGG | - | chr5.1:12391153-12391172 | None:intergenic | 35.0% |
| !! | GTTGTTTCTAATTCATACCG+TGG | + | chr5.1:12390369-12390388 | MS.gene010569:CDS | 35.0% |
| AAGAATTGCGTACCACTAGA+AGG | - | chr5.1:12391773-12391792 | None:intergenic | 40.0% | |
| AATTCCTTCATGCCTTCTAG+TGG | + | chr5.1:12391758-12391777 | MS.gene010569:CDS | 40.0% | |
| AGCTGTGAAAGTAGTGTTGT+TGG | - | chr5.1:12391160-12391179 | None:intergenic | 40.0% | |
| ATGAAGGAATTAAGTGGAGC+TGG | - | chr5.1:12391749-12391768 | None:intergenic | 40.0% | |
| CAACAAGATCTTTACTCCTC+TGG | + | chr5.1:12390465-12390484 | MS.gene010569:CDS | 40.0% | |
| CAACAGCTGTAAACATTGGA+GGG | + | chr5.1:12391534-12391553 | MS.gene010569:CDS | 40.0% | |
| GAATGAATGGGATCAATGAC+AGG | + | chr5.1:12391059-12391078 | MS.gene010569:intron | 40.0% | |
| GAGTGTACCACTAGAATTAG+AGG | - | chr5.1:12391636-12391655 | None:intergenic | 40.0% | |
| GGTTCCAAATCTCAAAACCA+CGG | - | chr5.1:12390389-12390408 | None:intergenic | 40.0% | |
| TAAACGAGTGCAAGCTAAAG+AGG | - | chr5.1:12390787-12390806 | None:intergenic | 40.0% | |
| TCAACAGCTGTAAACATTGG+AGG | + | chr5.1:12391533-12391552 | MS.gene010569:CDS | 40.0% | |
| TCAGAAGAACAAACCCTAGT+AGG | - | chr5.1:12390510-12390529 | None:intergenic | 40.0% | |
| TCTACTGTGTTTGTAGGAAG+TGG | + | chr5.1:12390540-12390559 | MS.gene010569:CDS | 40.0% | |
| ! | GAAGGCATGAAGGAATTAAG+TGG | - | chr5.1:12391755-12391774 | None:intergenic | 40.0% |
| ! | GTGTTGTTCTGACGAATGAA+TGG | + | chr5.1:12391046-12391065 | MS.gene010569:intron | 40.0% |
| ! | TCGTCAGAACAACACTGTTT+TGG | - | chr5.1:12391041-12391060 | None:intergenic | 40.0% |
| !! | ACTAGAATTAGAGGCGTTTC+CGG | - | chr5.1:12391627-12391646 | None:intergenic | 40.0% |
| !!! | ATTGGAGGGCATGTTTTTAG+AGG | + | chr5.1:12391548-12391567 | MS.gene010569:CDS | 40.0% |
| !!! | CATACCGTGGTTTTGAGATT+TGG | + | chr5.1:12390382-12390401 | MS.gene010569:CDS | 40.0% |
| !!! | TGAAGGTACCGAGAAAGTTT+TGG | + | chr5.1:12390961-12390980 | MS.gene010569:intron | 40.0% |
| AGAGTGAGTGAAGGGTTTGT+AGG | - | chr5.1:12390810-12390829 | None:intergenic | 45.0% | |
| CATCAGGGACAGAAGAGATA+AGG | - | chr5.1:12391685-12391704 | None:intergenic | 45.0% | |
| CTAGTGGTACACTCCTTGAA+GGG | + | chr5.1:12391642-12391661 | MS.gene010569:CDS | 45.0% | |
| CTTTCTCTTCTTCTAGCAGC+AGG | - | chr5.1:12390693-12390712 | None:intergenic | 45.0% | |
| GGAAACGCCTCTAATTCTAG+TGG | + | chr5.1:12391626-12391645 | MS.gene010569:CDS | 45.0% | |
| GGAGCTGGATACAAAGAAGA+AGG | - | chr5.1:12391734-12391753 | None:intergenic | 45.0% | |
| GTGTTTGTAGGAAGTGGAAG+TGG | + | chr5.1:12390546-12390565 | MS.gene010569:CDS | 45.0% | |
| TAGTGGTACACTCCTTGAAG+GGG | + | chr5.1:12391643-12391662 | MS.gene010569:CDS | 45.0% | |
| TCTAGTGGTACACTCCTTGA+AGG | + | chr5.1:12391641-12391660 | MS.gene010569:CDS | 45.0% | |
| TGAATTCTCCAGCAGAGTTC+AGG | + | chr5.1:12391462-12391481 | MS.gene010569:CDS | 45.0% | |
| TTTGTAGGAAGTGGAAGTGG+AGG | + | chr5.1:12390549-12390568 | MS.gene010569:CDS | 45.0% | |
| ! | GGAGATGAATTTTCCAGCTG+TGG | + | chr5.1:12391439-12391458 | MS.gene010569:CDS | 45.0% |
| ! | TGTGGAAGAGTGAGTGTTGT+TGG | - | chr5.1:12391135-12391154 | None:intergenic | 45.0% |
| !! | CTCAGTTGATGAGAACGAAG+AGG | + | chr5.1:12391499-12391518 | MS.gene010569:CDS | 45.0% |
| !! | TACTCCTCTGGTGTTGTGTT+AGG | + | chr5.1:12390477-12390496 | MS.gene010569:CDS | 45.0% |
| !! | TCTGGTGTTGTGTTAGGAGT+GGG | + | chr5.1:12390483-12390502 | MS.gene010569:CDS | 45.0% |
| CACTCCTAACACAACACCAG+AGG | - | chr5.1:12390484-12390503 | None:intergenic | 50.0% | |
| CTGAAGGGAGAGTGAGTGAA+GGG | - | chr5.1:12390818-12390837 | None:intergenic | 50.0% | |
| GTTAGGAGTGGGACCTACTA+GGG | + | chr5.1:12390494-12390513 | MS.gene010569:CDS | 50.0% | |
| TCCCTGATGCTACTGCTGTT+GGG | + | chr5.1:12391696-12391715 | MS.gene010569:CDS | 50.0% | |
| TGTTAGGAGTGGGACCTACT+AGG | + | chr5.1:12390493-12390512 | MS.gene010569:CDS | 50.0% | |
| ! | CGTACCACTAGAAGGCATGA+AGG | - | chr5.1:12391765-12391784 | None:intergenic | 50.0% |
| !! | CTCTGGTGTTGTGTTAGGAG+TGG | + | chr5.1:12390482-12390501 | MS.gene010569:CDS | 50.0% |
| CCCCAACAGCAGTAGCATCA+GGG | - | chr5.1:12391700-12391719 | None:intergenic | 55.0% | |
| CCCTGATGCTACTGCTGTTG+GGG | + | chr5.1:12391697-12391716 | MS.gene010569:CDS | 55.0% | |
| GCTGAAGGGAGAGTGAGTGA+AGG | - | chr5.1:12390819-12390838 | None:intergenic | 55.0% | |
| GCTGGAGAATTCACCACAGC+TGG | - | chr5.1:12391455-12391474 | None:intergenic | 55.0% | |
| GTCCCTGATGCTACTGCTGT+TGG | + | chr5.1:12391695-12391714 | MS.gene010569:CDS | 55.0% | |
| TCACTCACTCTCCCTTCAGC+AGG | + | chr5.1:12390819-12390838 | MS.gene010569:CDS | 55.0% | |
| TCCCCAACAGCAGTAGCATC+AGG | - | chr5.1:12391701-12391720 | None:intergenic | 55.0% | |
| TGGTACACTCCTTGAAGGGG+TGG | + | chr5.1:12391646-12391665 | MS.gene010569:CDS | 55.0% | |
| CTCACGCACCTGAACTCTGC+TGG | - | chr5.1:12391473-12391492 | None:intergenic | 60.0% | |
| AGGGCTGAGCCACCCCTTCA+AGG | - | chr5.1:12391658-12391677 | None:intergenic | 65.0% | |
| TGCTGCTGCTGCTGCTGCTG+AGG | - | chr5.1:12390444-12390463 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 12390273 | 12391811 | 12390273 | ID=MS.gene010569 |
| chr5.1 | mRNA | 12390273 | 12391811 | 12390273 | ID=MS.gene010569.t1;Parent=MS.gene010569 |
| chr5.1 | exon | 12390273 | 12390840 | 12390273 | ID=MS.gene010569.t1.exon1;Parent=MS.gene010569.t1 |
| chr5.1 | CDS | 12390273 | 12390840 | 12390273 | ID=cds.MS.gene010569.t1;Parent=MS.gene010569.t1 |
| chr5.1 | exon | 12391429 | 12391811 | 12391429 | ID=MS.gene010569.t1.exon2;Parent=MS.gene010569.t1 |
| chr5.1 | CDS | 12391429 | 12391811 | 12391429 | ID=cds.MS.gene010569.t1;Parent=MS.gene010569.t1 |
| Gene Sequence |
| Protein sequence |
