Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01061.t1 | XP_003593614.1 | 80.8 | 297 | 39 | 5 | 1 | 295 | 29 | 309 | 1.90E-83 | 319.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01061.t1 | Q9FZA4 | 46.0 | 300 | 121 | 12 | 20 | 295 | 29 | 311 | 3.3e-28 | 127.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01061.t1 | G7ISD2 | 80.8 | 297 | 39 | 5 | 1 | 295 | 29 | 309 | 1.3e-83 | 319.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene01061.t1 | TF | C2C2-Dof |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01061.t1 | MTR_2g014170 | 87.544 | 281 | 18 | 4 | 17 | 295 | 44 | 309 | 1.48e-140 | 399 |
MS.gene01061.t1 | MTR_4g088580 | 45.983 | 361 | 113 | 18 | 1 | 295 | 40 | 384 | 1.53e-57 | 189 |
MS.gene01061.t1 | MTR_4g063780 | 43.353 | 173 | 70 | 5 | 15 | 184 | 72 | 219 | 3.43e-32 | 122 |
MS.gene01061.t1 | MTR_8g479350 | 71.429 | 70 | 20 | 0 | 13 | 82 | 63 | 132 | 1.24e-31 | 120 |
MS.gene01061.t1 | MTR_2g096740 | 64.286 | 84 | 15 | 1 | 18 | 101 | 62 | 130 | 1.29e-31 | 119 |
MS.gene01061.t1 | MTR_2g096740 | 64.286 | 84 | 15 | 1 | 18 | 101 | 77 | 145 | 1.33e-31 | 119 |
MS.gene01061.t1 | MTR_4g022370 | 68.132 | 91 | 26 | 2 | 15 | 102 | 79 | 169 | 2.43e-31 | 120 |
MS.gene01061.t1 | MTR_1g077600 | 65.753 | 73 | 25 | 0 | 2 | 74 | 27 | 99 | 2.74e-31 | 118 |
MS.gene01061.t1 | MTR_1g077600 | 65.753 | 73 | 25 | 0 | 2 | 74 | 27 | 99 | 2.96e-31 | 118 |
MS.gene01061.t1 | MTR_2g093220 | 53.153 | 111 | 46 | 2 | 3 | 113 | 25 | 129 | 3.96e-31 | 118 |
MS.gene01061.t1 | MTR_8g079060 | 57.303 | 89 | 29 | 1 | 14 | 102 | 25 | 104 | 6.48e-31 | 115 |
MS.gene01061.t1 | MTR_4g461080 | 73.529 | 68 | 18 | 0 | 3 | 70 | 14 | 81 | 6.78e-31 | 117 |
MS.gene01061.t1 | MTR_1g056810 | 46.923 | 130 | 64 | 2 | 10 | 137 | 4 | 130 | 3.12e-30 | 115 |
MS.gene01061.t1 | MTR_7g024670 | 67.606 | 71 | 23 | 0 | 10 | 80 | 69 | 139 | 4.13e-30 | 117 |
MS.gene01061.t1 | MTR_3g091820 | 71.429 | 70 | 17 | 1 | 7 | 76 | 32 | 98 | 1.07e-29 | 114 |
MS.gene01061.t1 | MTR_8g068210 | 67.143 | 70 | 23 | 0 | 7 | 76 | 21 | 90 | 1.22e-29 | 115 |
MS.gene01061.t1 | MTR_8g015840 | 72.727 | 66 | 16 | 1 | 14 | 79 | 16 | 79 | 1.48e-29 | 112 |
MS.gene01061.t1 | MTR_2g013370 | 68.919 | 74 | 18 | 2 | 1 | 74 | 33 | 101 | 1.70e-29 | 113 |
MS.gene01061.t1 | MTR_8g027295 | 54.945 | 91 | 30 | 1 | 6 | 96 | 12 | 91 | 3.35e-29 | 112 |
MS.gene01061.t1 | MTR_7g059400 | 80.702 | 57 | 11 | 0 | 14 | 70 | 72 | 128 | 3.68e-29 | 114 |
MS.gene01061.t1 | MTR_5g031440 | 79.630 | 54 | 11 | 0 | 15 | 68 | 40 | 93 | 2.30e-28 | 111 |
MS.gene01061.t1 | MTR_2g014060 | 68.657 | 67 | 21 | 0 | 3 | 69 | 10 | 76 | 7.32e-28 | 110 |
MS.gene01061.t1 | MTR_3g090430 | 73.016 | 63 | 17 | 0 | 17 | 79 | 50 | 112 | 1.08e-27 | 109 |
MS.gene01061.t1 | MTR_4g109980 | 81.132 | 53 | 10 | 0 | 16 | 68 | 38 | 90 | 1.34e-27 | 109 |
MS.gene01061.t1 | MTR_2g059540 | 86.000 | 50 | 7 | 0 | 17 | 66 | 30 | 79 | 1.43e-27 | 106 |
MS.gene01061.t1 | MTR_3g077750 | 70.968 | 62 | 18 | 0 | 7 | 68 | 50 | 111 | 2.15e-27 | 108 |
MS.gene01061.t1 | MTR_4g089095 | 75.000 | 60 | 14 | 1 | 16 | 75 | 48 | 106 | 2.42e-27 | 108 |
MS.gene01061.t1 | MTR_4g089095 | 75.000 | 60 | 14 | 1 | 16 | 75 | 14 | 72 | 2.81e-27 | 107 |
MS.gene01061.t1 | MTR_3g435480 | 64.516 | 62 | 22 | 0 | 12 | 73 | 130 | 191 | 1.67e-25 | 105 |
MS.gene01061.t1 | MTR_4g082060 | 51.852 | 81 | 39 | 0 | 2 | 82 | 106 | 186 | 1.00e-24 | 103 |
MS.gene01061.t1 | MTR_7g010950 | 63.934 | 61 | 22 | 0 | 12 | 72 | 129 | 189 | 1.54e-24 | 103 |
MS.gene01061.t1 | MTR_8g044220 | 51.250 | 80 | 35 | 1 | 12 | 91 | 112 | 187 | 3.28e-24 | 101 |
MS.gene01061.t1 | MTR_6g012450 | 64.407 | 59 | 21 | 0 | 12 | 70 | 130 | 188 | 5.48e-24 | 101 |
MS.gene01061.t1 | MTR_7g086780 | 50.000 | 96 | 47 | 1 | 12 | 107 | 93 | 187 | 6.14e-24 | 100 |
MS.gene01061.t1 | MTR_2g016030 | 61.017 | 59 | 23 | 0 | 11 | 69 | 40 | 98 | 6.96e-24 | 95.5 |
MS.gene01061.t1 | MTR_6g027450 | 50.562 | 89 | 43 | 1 | 12 | 100 | 83 | 170 | 2.35e-23 | 98.2 |
MS.gene01061.t1 | MTR_5g041420 | 61.017 | 59 | 23 | 0 | 12 | 70 | 132 | 190 | 8.14e-23 | 96.3 |
MS.gene01061.t1 | MTR_6g027460 | 59.322 | 59 | 24 | 0 | 12 | 70 | 90 | 148 | 2.03e-22 | 95.9 |
MS.gene01061.t1 | MTR_5g041400 | 48.315 | 89 | 46 | 0 | 7 | 95 | 108 | 196 | 6.14e-22 | 94.7 |
MS.gene01061.t1 | MTR_5g041380 | 43.519 | 108 | 56 | 1 | 7 | 114 | 116 | 218 | 9.81e-22 | 94.0 |
MS.gene01061.t1 | MTR_5g041530 | 60.656 | 61 | 24 | 0 | 13 | 73 | 135 | 195 | 1.74e-21 | 93.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01061.t1 | AT1G28310 | 41.883 | 308 | 126 | 13 | 18 | 295 | 27 | 311 | 9.33e-45 | 154 |
MS.gene01061.t1 | AT1G28310 | 41.883 | 308 | 126 | 13 | 18 | 295 | 51 | 335 | 1.54e-44 | 154 |
MS.gene01061.t1 | AT1G51700 | 42.208 | 154 | 84 | 3 | 9 | 160 | 24 | 174 | 2.82e-33 | 121 |
MS.gene01061.t1 | AT3G55370 | 70.588 | 68 | 20 | 0 | 15 | 82 | 73 | 140 | 5.10e-32 | 121 |
MS.gene01061.t1 | AT3G55370 | 70.588 | 68 | 20 | 0 | 15 | 82 | 73 | 140 | 6.16e-32 | 121 |
MS.gene01061.t1 | AT3G55370 | 70.588 | 68 | 20 | 0 | 15 | 82 | 118 | 185 | 7.66e-32 | 121 |
MS.gene01061.t1 | AT5G60200 | 41.071 | 168 | 69 | 4 | 8 | 175 | 45 | 182 | 1.09e-31 | 119 |
MS.gene01061.t1 | AT3G45610 | 41.463 | 164 | 75 | 5 | 15 | 176 | 37 | 181 | 3.63e-31 | 117 |
MS.gene01061.t1 | AT3G50410 | 65.789 | 76 | 25 | 1 | 1 | 76 | 14 | 88 | 5.63e-31 | 117 |
MS.gene01061.t1 | AT1G07640 | 78.689 | 61 | 13 | 0 | 18 | 78 | 21 | 81 | 6.25e-31 | 117 |
MS.gene01061.t1 | AT2G28810 | 81.034 | 58 | 11 | 0 | 12 | 69 | 71 | 128 | 6.49e-31 | 118 |
MS.gene01061.t1 | AT1G07640 | 78.689 | 61 | 13 | 0 | 18 | 78 | 77 | 137 | 9.17e-31 | 118 |
MS.gene01061.t1 | AT2G28810 | 81.034 | 58 | 11 | 0 | 12 | 69 | 88 | 145 | 9.33e-31 | 118 |
MS.gene01061.t1 | AT1G07640 | 78.689 | 61 | 13 | 0 | 18 | 78 | 85 | 145 | 1.07e-30 | 118 |
MS.gene01061.t1 | AT5G65590 | 73.846 | 65 | 17 | 0 | 13 | 77 | 36 | 100 | 1.57e-30 | 117 |
MS.gene01061.t1 | AT2G37590 | 78.333 | 60 | 13 | 0 | 15 | 74 | 86 | 145 | 3.83e-30 | 116 |
MS.gene01061.t1 | AT3G21270 | 50.962 | 104 | 50 | 1 | 18 | 121 | 29 | 131 | 1.02e-29 | 112 |
MS.gene01061.t1 | AT5G02460 | 87.037 | 54 | 7 | 0 | 17 | 70 | 94 | 147 | 1.56e-29 | 116 |
MS.gene01061.t1 | AT5G66940 | 46.774 | 124 | 60 | 3 | 4 | 123 | 18 | 139 | 6.22e-29 | 110 |
MS.gene01061.t1 | AT4G38000 | 78.947 | 57 | 12 | 0 | 15 | 71 | 38 | 94 | 1.51e-28 | 110 |
MS.gene01061.t1 | AT2G28510 | 72.727 | 66 | 15 | 1 | 16 | 81 | 46 | 108 | 3.03e-28 | 110 |
MS.gene01061.t1 | AT5G60850 | 73.770 | 61 | 16 | 0 | 14 | 74 | 47 | 107 | 5.08e-28 | 110 |
MS.gene01061.t1 | AT1G21340 | 66.216 | 74 | 20 | 1 | 7 | 75 | 27 | 100 | 5.52e-28 | 108 |
MS.gene01061.t1 | AT3G61850 | 65.672 | 67 | 20 | 1 | 10 | 76 | 54 | 117 | 6.58e-27 | 106 |
MS.gene01061.t1 | AT3G61850 | 65.672 | 67 | 20 | 1 | 10 | 76 | 54 | 117 | 6.58e-27 | 106 |
MS.gene01061.t1 | AT3G61850 | 65.672 | 67 | 20 | 1 | 10 | 76 | 54 | 117 | 8.50e-27 | 107 |
MS.gene01061.t1 | AT3G61850 | 65.672 | 67 | 20 | 1 | 10 | 76 | 66 | 129 | 9.63e-27 | 106 |
MS.gene01061.t1 | AT3G61850 | 65.672 | 67 | 20 | 1 | 10 | 76 | 66 | 129 | 1.14e-26 | 107 |
MS.gene01061.t1 | AT3G52440 | 74.194 | 62 | 14 | 1 | 20 | 79 | 27 | 88 | 1.82e-26 | 104 |
MS.gene01061.t1 | AT3G52440 | 74.194 | 62 | 14 | 1 | 20 | 79 | 46 | 107 | 2.94e-26 | 104 |
MS.gene01061.t1 | AT1G64620 | 70.000 | 60 | 18 | 0 | 7 | 66 | 38 | 97 | 4.18e-26 | 105 |
MS.gene01061.t1 | AT5G62940 | 68.750 | 64 | 18 | 1 | 5 | 68 | 62 | 123 | 5.77e-26 | 105 |
MS.gene01061.t1 | AT4G00940 | 75.000 | 56 | 14 | 0 | 15 | 70 | 65 | 120 | 7.57e-26 | 104 |
MS.gene01061.t1 | AT4G00940 | 75.000 | 56 | 14 | 0 | 15 | 70 | 65 | 120 | 7.57e-26 | 104 |
MS.gene01061.t1 | AT4G00940 | 75.000 | 56 | 14 | 0 | 15 | 70 | 65 | 120 | 7.57e-26 | 104 |
MS.gene01061.t1 | AT2G46590 | 70.175 | 57 | 17 | 0 | 9 | 65 | 59 | 115 | 9.58e-26 | 105 |
MS.gene01061.t1 | AT2G46590 | 70.175 | 57 | 17 | 0 | 9 | 65 | 71 | 127 | 1.24e-25 | 105 |
MS.gene01061.t1 | AT3G47500 | 71.930 | 57 | 16 | 0 | 16 | 72 | 108 | 164 | 1.40e-25 | 105 |
MS.gene01061.t1 | AT5G62430 | 55.844 | 77 | 27 | 1 | 4 | 73 | 33 | 109 | 1.57e-25 | 103 |
MS.gene01061.t1 | AT5G39660 | 65.574 | 61 | 21 | 0 | 12 | 72 | 132 | 192 | 7.33e-25 | 103 |
MS.gene01061.t1 | AT5G39660 | 65.574 | 61 | 21 | 0 | 12 | 72 | 132 | 192 | 7.33e-25 | 103 |
MS.gene01061.t1 | AT5G39660 | 65.574 | 61 | 21 | 0 | 12 | 72 | 132 | 192 | 7.33e-25 | 103 |
MS.gene01061.t1 | AT1G29160 | 55.072 | 69 | 31 | 0 | 7 | 75 | 51 | 119 | 2.36e-24 | 97.1 |
MS.gene01061.t1 | AT4G24060 | 38.235 | 204 | 83 | 7 | 5 | 200 | 40 | 208 | 2.39e-24 | 100 |
MS.gene01061.t1 | AT2G34140 | 55.072 | 69 | 31 | 0 | 7 | 75 | 47 | 115 | 3.30e-24 | 96.7 |
MS.gene01061.t1 | AT1G47655 | 72.549 | 51 | 14 | 0 | 16 | 66 | 27 | 77 | 4.30e-24 | 97.4 |
MS.gene01061.t1 | AT1G26790 | 50.526 | 95 | 43 | 2 | 2 | 96 | 98 | 188 | 8.73e-24 | 99.8 |
MS.gene01061.t1 | AT4G21050 | 76.000 | 50 | 12 | 0 | 20 | 69 | 26 | 75 | 1.12e-23 | 96.3 |
MS.gene01061.t1 | AT1G69570 | 52.703 | 74 | 35 | 0 | 5 | 78 | 119 | 192 | 3.16e-23 | 98.6 |
MS.gene01061.t1 | AT4G21040 | 56.250 | 80 | 27 | 2 | 20 | 99 | 27 | 98 | 3.33e-22 | 92.8 |
MS.gene01061.t1 | AT4G21080 | 50.000 | 80 | 37 | 1 | 20 | 99 | 27 | 103 | 2.67e-21 | 90.9 |
MS.gene01061.t1 | AT4G21030 | 60.870 | 46 | 18 | 0 | 20 | 65 | 23 | 68 | 5.94e-13 | 66.6 |
Find 52 sgRNAs with CRISPR-Local
Find 58 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGGCTTGGAATTTAACAATT+TGG | 0.140338 | 2.4:+70732852 | MS.gene01061:CDS |
GCAAAGCTTGCAAACGTTAT+TGG | 0.143992 | 2.4:+70732293 | MS.gene01061:CDS |
AGGACTAATATTATGATTTA+AGG | 0.162696 | 2.4:-70732485 | None:intergenic |
CACCAGCTTCTTCACTTTAC+TGG | 0.188996 | 2.4:+70732944 | MS.gene01061:CDS |
GGCTTGGAATTTAACAATTT+GGG | 0.228469 | 2.4:+70732853 | MS.gene01061:CDS |
AATGATCAAGGTTCTAATAT+TGG | 0.267697 | 2.4:+70733000 | MS.gene01061:CDS |
TGTATAACCATTATGATCAT+TGG | 0.338919 | 2.4:-70732668 | None:intergenic |
GGACAAGAGGTGGTACTCTT+AGG | 0.348242 | 2.4:+70732314 | MS.gene01061:CDS |
CAGATGAATACCATTGGATT+AGG | 0.360977 | 2.4:+70732616 | MS.gene01061:CDS |
CATCATCAGCTATTGGTGTT+TGG | 0.379698 | 2.4:+70732977 | MS.gene01061:CDS |
TCTAGAATCTCAACAAGTTC+AGG | 0.387293 | 2.4:+70732577 | MS.gene01061:CDS |
GATCATAATGGTTATACAAA+TGG | 0.418978 | 2.4:+70732673 | MS.gene01061:CDS |
ATTATGATCATTGGCTTCGC+TGG | 0.424556 | 2.4:-70732659 | None:intergenic |
CTTAGGAATGTTCCTGTTGG+TGG | 0.434008 | 2.4:+70732331 | MS.gene01061:CDS |
GAATTTGAAGAAGTGGTGTT+TGG | 0.453066 | 2.4:-70732460 | None:intergenic |
ACAGCATCATCATCAGCTAT+TGG | 0.454258 | 2.4:+70732970 | MS.gene01061:CDS |
TTGGGGAATGGAAGTGAGAA+AGG | 0.465690 | 2.4:+70732871 | MS.gene01061:CDS |
CTTCTGTAACCACCACCAAC+AGG | 0.474357 | 2.4:-70732343 | None:intergenic |
ATTGGTGTTTGGAATGATCA+AGG | 0.474683 | 2.4:+70732988 | MS.gene01061:CDS |
GAATTTAACAATTTGGGGAA+TGG | 0.481892 | 2.4:+70732859 | MS.gene01061:CDS |
TAAGGTTGAATTTGAAGAAG+TGG | 0.481982 | 2.4:-70732467 | None:intergenic |
CAACATAAATTCATGAATGA+TGG | 0.486443 | 2.4:+70732814 | MS.gene01061:CDS |
CAAGCTTTGCAGAAATGTCT+TGG | 0.496012 | 2.4:-70732280 | None:intergenic |
CAGCCTCAGATGAATACCAT+TGG | 0.500398 | 2.4:+70732610 | MS.gene01061:CDS |
AAAGGAATGAAGAAAGATGA+AGG | 0.500974 | 2.4:+70732889 | MS.gene01061:CDS |
GAAGAAAGATGAAGGAGAGA+TGG | 0.502257 | 2.4:+70732897 | MS.gene01061:CDS |
GGCATAACTGATGCATTACT+TGG | 0.503446 | 2.4:-70732766 | None:intergenic |
GAGATATTGAACCTTGAGAA+TGG | 0.505952 | 2.4:-70732556 | None:intergenic |
AGAAGAATTAGTAGTATCAA+TGG | 0.516034 | 2.4:-70732419 | None:intergenic |
AGGAATGTTCCTGTTGGTGG+TGG | 0.516563 | 2.4:+70732334 | MS.gene01061:CDS |
AGCGAAGCCAATGATCATAA+TGG | 0.521310 | 2.4:+70732661 | MS.gene01061:CDS |
ATGTGAATCTTCCATTCTCA+AGG | 0.533312 | 2.4:+70732545 | MS.gene01061:CDS |
CTTGATAAACCATAAAACAT+AGG | 0.540160 | 2.4:-70732505 | None:intergenic |
GGCTTCGCTGGACGTAAACC+CGG | 0.542853 | 2.4:-70732647 | None:intergenic |
GTGGTGTTTGGTGTGGAACT+AGG | 0.543791 | 2.4:-70732448 | None:intergenic |
GCTTGGAATTTAACAATTTG+GGG | 0.544684 | 2.4:+70732854 | MS.gene01061:CDS |
ATTAGTAGTATCAATGGTGG+AGG | 0.545112 | 2.4:-70732413 | None:intergenic |
AGAATTAGTAGTATCAATGG+TGG | 0.550623 | 2.4:-70732416 | None:intergenic |
TGAAGAAGTGGTGTTTGGTG+TGG | 0.550717 | 2.4:-70732455 | None:intergenic |
TGCAAACGTTATTGGACAAG+AGG | 0.578125 | 2.4:+70732301 | MS.gene01061:CDS |
ACTCTTAGGAATGTTCCTGT+TGG | 0.582456 | 2.4:+70732328 | MS.gene01061:CDS |
TTCCAGTAAAGTGAAGAAGC+TGG | 0.599918 | 2.4:-70732946 | None:intergenic |
TGAAGGAGAGATGGAACATG+TGG | 0.611078 | 2.4:+70732906 | MS.gene01061:CDS |
AGAGCAGAACTCAACAGAGA+AGG | 0.622062 | 2.4:-70732787 | None:intergenic |
AATCCAATGGTATTCATCTG+AGG | 0.625381 | 2.4:-70732613 | None:intergenic |
GGATGAAAAGCCTAATCCAA+TGG | 0.636487 | 2.4:-70732626 | None:intergenic |
AAACGTTATTGGACAAGAGG+TGG | 0.639210 | 2.4:+70732304 | MS.gene01061:CDS |
CAGTAAAGTGAAGAAGCTGG+TGG | 0.648703 | 2.4:-70732943 | None:intergenic |
GAAGGAGAGATGGAACATGT+GGG | 0.678274 | 2.4:+70732907 | MS.gene01061:CDS |
TTAGTAGTATCAATGGTGGA+GGG | 0.679047 | 2.4:-70732412 | None:intergenic |
GGAGAGATGGAACATGTGGG+TGG | 0.710445 | 2.4:+70732910 | MS.gene01061:CDS |
GTGTTTGATGAGTCACAACG+TGG | 0.749573 | 2.4:-70732220 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGGACTAATATTATGATTTA+AGG | - | chr2.4:70732488-70732507 | None:intergenic | 20.0% |
!!! | AATATTAGTCCTATGTTTTA+TGG | + | chr2.4:70732496-70732515 | MS.gene01061:CDS | 20.0% |
! | AGAAGAATTAGTAGTATCAA+TGG | - | chr2.4:70732422-70732441 | None:intergenic | 25.0% |
! | CAACATAAATTCATGAATGA+TGG | + | chr2.4:70732814-70732833 | MS.gene01061:CDS | 25.0% |
! | CTTGATAAACCATAAAACAT+AGG | - | chr2.4:70732508-70732527 | None:intergenic | 25.0% |
! | GATCATAATGGTTATACAAA+TGG | + | chr2.4:70732673-70732692 | MS.gene01061:CDS | 25.0% |
! | TGTATAACCATTATGATCAT+TGG | - | chr2.4:70732671-70732690 | None:intergenic | 25.0% |
!! | AATGATCAAGGTTCTAATAT+TGG | + | chr2.4:70733000-70733019 | MS.gene01061:CDS | 25.0% |
AAAGGAATGAAGAAAGATGA+AGG | + | chr2.4:70732889-70732908 | MS.gene01061:CDS | 30.0% | |
AGAATTAGTAGTATCAATGG+TGG | - | chr2.4:70732419-70732438 | None:intergenic | 30.0% | |
GAATTTAACAATTTGGGGAA+TGG | + | chr2.4:70732859-70732878 | MS.gene01061:CDS | 30.0% | |
GCTTGGAATTTAACAATTTG+GGG | + | chr2.4:70732854-70732873 | MS.gene01061:CDS | 30.0% | |
GGCTTGGAATTTAACAATTT+GGG | + | chr2.4:70732853-70732872 | MS.gene01061:CDS | 30.0% | |
TAAGGTTGAATTTGAAGAAG+TGG | - | chr2.4:70732470-70732489 | None:intergenic | 30.0% | |
AATCCAATGGTATTCATCTG+AGG | - | chr2.4:70732616-70732635 | None:intergenic | 35.0% | |
ATGTGAATCTTCCATTCTCA+AGG | + | chr2.4:70732545-70732564 | MS.gene01061:CDS | 35.0% | |
ATTAGTAGTATCAATGGTGG+AGG | - | chr2.4:70732416-70732435 | None:intergenic | 35.0% | |
CAGATGAATACCATTGGATT+AGG | + | chr2.4:70732616-70732635 | MS.gene01061:CDS | 35.0% | |
GAATTTGAAGAAGTGGTGTT+TGG | - | chr2.4:70732463-70732482 | None:intergenic | 35.0% | |
GAGATATTGAACCTTGAGAA+TGG | - | chr2.4:70732559-70732578 | None:intergenic | 35.0% | |
GGGCTTGGAATTTAACAATT+TGG | + | chr2.4:70732852-70732871 | MS.gene01061:CDS | 35.0% | |
! | ATTGGTGTTTGGAATGATCA+AGG | + | chr2.4:70732988-70733007 | MS.gene01061:CDS | 35.0% |
! | TCTAGAATCTCAACAAGTTC+AGG | + | chr2.4:70732577-70732596 | MS.gene01061:CDS | 35.0% |
! | TTAGTAGTATCAATGGTGGA+GGG | - | chr2.4:70732415-70732434 | None:intergenic | 35.0% |
!! | ATTGGATTAGGCTTTTCATC+CGG | + | chr2.4:70732628-70732647 | MS.gene01061:CDS | 35.0% |
AAACGTTATTGGACAAGAGG+TGG | + | chr2.4:70732304-70732323 | MS.gene01061:CDS | 40.0% | |
ACAGCATCATCATCAGCTAT+TGG | + | chr2.4:70732970-70732989 | MS.gene01061:CDS | 40.0% | |
ACTCTTAGGAATGTTCCTGT+TGG | + | chr2.4:70732328-70732347 | MS.gene01061:CDS | 40.0% | |
AGCGAAGCCAATGATCATAA+TGG | + | chr2.4:70732661-70732680 | MS.gene01061:CDS | 40.0% | |
CAAGCTTTGCAGAAATGTCT+TGG | - | chr2.4:70732283-70732302 | None:intergenic | 40.0% | |
GAAGAAAGATGAAGGAGAGA+TGG | + | chr2.4:70732897-70732916 | MS.gene01061:CDS | 40.0% | |
GCAAAGCTTGCAAACGTTAT+TGG | + | chr2.4:70732293-70732312 | MS.gene01061:CDS | 40.0% | |
GGATGAAAAGCCTAATCCAA+TGG | - | chr2.4:70732629-70732648 | None:intergenic | 40.0% | |
GGCATAACTGATGCATTACT+TGG | - | chr2.4:70732769-70732788 | None:intergenic | 40.0% | |
TGCAAACGTTATTGGACAAG+AGG | + | chr2.4:70732301-70732320 | MS.gene01061:CDS | 40.0% | |
TTCCAGTAAAGTGAAGAAGC+TGG | - | chr2.4:70732949-70732968 | None:intergenic | 40.0% | |
! | CATCATCAGCTATTGGTGTT+TGG | + | chr2.4:70732977-70732996 | MS.gene01061:CDS | 40.0% |
! | GATGGTAGCAACACTTTTCA+GGG | + | chr2.4:70732832-70732851 | MS.gene01061:CDS | 40.0% |
! | TGATGGTAGCAACACTTTTC+AGG | + | chr2.4:70732831-70732850 | MS.gene01061:CDS | 40.0% |
!! | ATTATGATCATTGGCTTCGC+TGG | - | chr2.4:70732662-70732681 | None:intergenic | 40.0% |
!! | TTGGATTAGGCTTTTCATCC+GGG | + | chr2.4:70732629-70732648 | MS.gene01061:CDS | 40.0% |
AGAGCAGAACTCAACAGAGA+AGG | - | chr2.4:70732790-70732809 | None:intergenic | 45.0% | |
CACCAGCTTCTTCACTTTAC+TGG | + | chr2.4:70732944-70732963 | MS.gene01061:CDS | 45.0% | |
CAGCCTCAGATGAATACCAT+TGG | + | chr2.4:70732610-70732629 | MS.gene01061:CDS | 45.0% | |
CAGTAAAGTGAAGAAGCTGG+TGG | - | chr2.4:70732946-70732965 | None:intergenic | 45.0% | |
CTTAGGAATGTTCCTGTTGG+TGG | + | chr2.4:70732331-70732350 | MS.gene01061:CDS | 45.0% | |
GAAGGAGAGATGGAACATGT+GGG | + | chr2.4:70732907-70732926 | MS.gene01061:CDS | 45.0% | |
GTGTTTGATGAGTCACAACG+TGG | - | chr2.4:70732223-70732242 | None:intergenic | 45.0% | |
TGAAGGAGAGATGGAACATG+TGG | + | chr2.4:70732906-70732925 | MS.gene01061:CDS | 45.0% | |
TTGGGGAATGGAAGTGAGAA+AGG | + | chr2.4:70732871-70732890 | MS.gene01061:CDS | 45.0% | |
! | TGAAGAAGTGGTGTTTGGTG+TGG | - | chr2.4:70732458-70732477 | None:intergenic | 45.0% |
!! | TAGCAACACTTTTCAGGGCT+TGG | + | chr2.4:70732837-70732856 | MS.gene01061:CDS | 45.0% |
CTTCTGTAACCACCACCAAC+AGG | - | chr2.4:70732346-70732365 | None:intergenic | 50.0% | |
GGACAAGAGGTGGTACTCTT+AGG | + | chr2.4:70732314-70732333 | MS.gene01061:CDS | 50.0% | |
! | AGGAATGTTCCTGTTGGTGG+TGG | + | chr2.4:70732334-70732353 | MS.gene01061:CDS | 50.0% |
!! | GTGGTGTTTGGTGTGGAACT+AGG | - | chr2.4:70732451-70732470 | None:intergenic | 50.0% |
GGAGAGATGGAACATGTGGG+TGG | + | chr2.4:70732910-70732929 | MS.gene01061:CDS | 55.0% | |
GGCTTCGCTGGACGTAAACC+CGG | - | chr2.4:70732650-70732669 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 70732160 | 70733047 | 70732160 | ID=MS.gene01061 |
chr2.4 | mRNA | 70732160 | 70733047 | 70732160 | ID=MS.gene01061.t1;Parent=MS.gene01061 |
chr2.4 | exon | 70732160 | 70733047 | 70732160 | ID=MS.gene01061.t1.exon1;Parent=MS.gene01061.t1 |
chr2.4 | CDS | 70732160 | 70733047 | 70732160 | ID=cds.MS.gene01061.t1;Parent=MS.gene01061.t1 |
Gene Sequence |
Protein sequence |